Pregenerated sensors for TRIM61 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000109718Ensembl transcript IDs: ENSMUST00000078409.5, ENSMUST00000211310.2
Found 55 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR GCA 90 bp | ACCCCCATTATCCTATCCACTGCCCACGCCAGCCACCTCCTGCCCTGTCCACCGACCGTTCGGCATACCTaGTCCTGGGAAAAGGCTCCC | + |
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Preference number: 4 (lower is better) Translates to: TPIILSTAHASHLLPCPPTVRHT*SWEKAP Trigger: GGGAGCCTTTTCCCAGGAGCAGGTATGCCGAACGGT...CGGTGGACAGGGCAGGAGGTGGCTGGCGTGGGCAGTGGATAGGATAATGGGGGT 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000078409.5 |
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| CDS-3UTR TCA 90 bp | ACCCCCATTATCCTATCCACTGCCCACGCCAGCCACCTCCTGCCCTGTCCACCGCCTGGACAGTTCAAATaGCAAGAGGGGCAGGGGACA | + |
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Preference number: 4 (lower is better) Translates to: TPIILSTAHASHLLPCPPPGQFK*QEGQGT Trigger: TGTCCCCTGCCCCTCTTGTCATTTGAACTGTCCAGG...CGGTGGACAGGGCAGGAGGTGGCTGGCGTGGGCAGTGGATAGGATAATGGGGGT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000078409.5 |
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| CDS-3UTR CCA 90 bp | CCACTGCCCACGCCAGCCACCTCCTGCCCTGTCCACCGGCTGTTCTGTCTTGTTCCTCCCAGAACACACTaGTGCAGGACAGACAGACTT | + |
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Preference number: 4 (lower is better) Translates to: PLPTPATSCPVHRLFCLVPPRTH*CRTDRL Trigger: AAGTCTGTCTGTCCTGCACCAGTGTGTTCTGGGAGG...AACAAGACAGAACAGCCGGTGGACAGGGCAGGAGGTGGCTGGCGTGGGCAGTGG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078409.5 |
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| CDS-3UTR TCA 90 bp | CCATTATCCTATCCACTGCCCACGCCAGCCACCTCCTGCCCTGTCCACCGGCTGCAGCAATGCCAGCTCTaGCTTTTCACACTGGCTCTT | + |
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Preference number: 4 (lower is better) Translates to: PLSYPLPTPATSCPVHRLQQCQL*LFTLAL Trigger: AAGAGCCAGTGTGAAAAGTCAGAGCTGGCATTGCTG...CAGCCGGTGGACAGGGCAGGAGGTGGCTGGCGTGGGCAGTGGATAGGATAATGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078409.5 |
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| CDS-3UTR GCA 90 bp | ATCCACTGCCCACGCCAGCCACCTCCTGCCCTGTCCACCGGCTGTTCTGTCTTGGGATGCTCTCCTTCTTaGCTTCCACTCCTGCTAGTT | + |
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Preference number: 4 (lower is better) Translates to: IHCPRQPPPALSTGCSVLGCSPS*LPLLLV Trigger: AACTAGCAGGAGTGGAAGGCAAGAAGGAGAGCATCC...CAAGACAGAACAGCCGGTGGACAGGGCAGGAGGTGGCTGGCGTGGGCAGTGGAT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078409.5 |
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| CDS-3UTR CCA 90 bp | TCCTATCCACTGCCCACGCCAGCCACCTCCTGCCCTGTCCACCGGCTGTTCTGTGACAGACAGACTTTATaGCCACACTCCATGGTCCCT | + |
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Preference number: 4 (lower is better) Translates to: SYPLPTPATSCPVHRLFCDRQTL*PHSMVP Trigger: AGGGACCATGGAGTGTGGCCATAAAGTCTGTCTGTC...ACAGAACAGCCGGTGGACAGGGCAGGAGGTGGCTGGCGTGGGCAGTGGATAGGA 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078409.5 |
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| CDS-3UTR CCA 90 bp | AAAAACCCCCATTATCCTATCCACTGCCCACGCCAGCCACCTCCTGCCCTGTCCGGGGAAGCTGCGCAGTaGACAGGAAACCTGTTGTGG | + |
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Preference number: 4 (lower is better) Translates to: KNPHYPIHCPRQPPPALSGEAAQ*TGNLLW Trigger: CCACAACAGGTTTCCTGTCCACTGCGCAGCTTCCCC...GGACAGGGCAGGAGGTGGCTGGCGTGGGCAGTGGATAGGATAATGGGGGTTTTT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000078409.5 |
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| CDS-3UTR GCA 90 bp | ACCCCCATTATCCTATCCACTGCCCACGCCAGCCACCTCCTGCCCTGTCCACCGCCCAGAACACACTGGTaGAGGACAGACAGACTTTAT | + |
|
Preference number: 4 (lower is better) Translates to: TPIILSTAHASHLLPCPPPRTHW*RTDRLY Trigger: ATAAAGTCTGTCTGTCCTGCACCAGTGTGTTCTGGG...CGGTGGACAGGGCAGGAGGTGGCTGGCGTGGGCAGTGGATAGGATAATGGGGGT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000078409.5 |
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| CDS-3UTR CCA 90 bp | CCCATTATCCTATCCACTGCCCACGCCAGCCACCTCCTGCCCTGTCCACCGGCTACACTCCATGGTCCCTaGGTTCTTGAGGTATTCCTT | + |
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Preference number: 4 (lower is better) Translates to: PIILSTAHASHLLPCPPATLHGP*VLEVFL Trigger: AAGGAATACCTCAAGAACCCAGGGACCATGGAGTGT...AGCCGGTGGACAGGGCAGGAGGTGGCTGGCGTGGGCAGTGGATAGGATAATGGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078409.5 |
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| CDS-3UTR CCA 90 bp | ACCCCCATTATCCTATCCACTGCCCACGCCAGCCACCTCCTGCCCTGTCCACCGAATTGCTTTCTGGATTaGCTCCACCATCTCCCTCCA | + |
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Preference number: 4 (lower is better) Translates to: TPIILSTAHASHLLPCPPNCFLD*LHHLPP Trigger: TGGAGGGAGATGGTGGAGCCAATCCAGAAAGCAATT...CGGTGGACAGGGCAGGAGGTGGCTGGCGTGGGCAGTGGATAGGATAATGGGGGT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000078409.5 |
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| CDS-3UTR CCA 90 bp | AAAAACCCCCATTATCCTATCCACTGCCCACGCCAGCCACCTCCTGCCCTGTCCCGGCATACCTGCTCCTaGGAAAAGGCTCCCTACAGA | + |
|
Preference number: 4 (lower is better) Translates to: KNPHYPIHCPRQPPPALSRHTCS*EKAPYR Trigger: TCTGTAGGGAGCCTTTTCCCAGGAGCAGGTATGCCG...GGACAGGGCAGGAGGTGGCTGGCGTGGGCAGTGGATAGGATAATGGGGGTTTTT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000078409.5 |
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| CDS-3UTR TCA 90 bp | ATCCACTGCCCACGCCAGCCACCTCCTGCCCTGTCCACCGGCTGTTCTGTCTTGCCCAATCCTAGTAGGTaGTACTTTGGGAAGAAGATG | + |
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Preference number: 4 (lower is better) Translates to: IHCPRQPPPALSTGCSVLPNPSR*YFGKKM Trigger: CATCTTCTTCCCAAAGTATCACCTACTAGGATTGGG...CAAGACAGAACAGCCGGTGGACAGGGCAGGAGGTGGCTGGCGTGGGCAGTGGAT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078409.5 |
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| CDS-3UTR GCA 90 bp | ACCCCCATTATCCTATCCACTGCCCACGCCAGCCACCTCCTGCCCTGTCCACCGCCTTTGTGTGCTAATTaGTTTCTGGATTGGCTCCAC | + |
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Preference number: 4 (lower is better) Translates to: TPIILSTAHASHLLPCPPPLCAN*FLDWLH Trigger: GTGGAGCCAATCCAGAAAGCAATTAGCACACAAAGG...CGGTGGACAGGGCAGGAGGTGGCTGGCGTGGGCAGTGGATAGGATAATGGGGGT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000078409.5 |
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| CDS-3UTR GCA 90 bp | TCCTATCCACTGCCCACGCCAGCCACCTCCTGCCCTGTCCACCGGCTGTTCTGTCAAGATCTGCAACTGTaGAAATCTTCAGAGGCTCGT | + |
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Preference number: 4 (lower is better) Translates to: SYPLPTPATSCPVHRLFCQDLQL*KSSEAR Trigger: ACGAGCCTCTGAAGATTTGCACAGTTGCAGATCTTG...ACAGAACAGCCGGTGGACAGGGCAGGAGGTGGCTGGCGTGGGCAGTGGATAGGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078409.5 |
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| CDS-3UTR TCA 90 bp | ACCCCCATTATCCTATCCACTGCCCACGCCAGCCACCTCCTGCCCTGTCCACCGAACTCACCTGGTGGCTaGTTACTCAAAAAGTTCCTT | + |
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Preference number: 4 (lower is better) Translates to: TPIILSTAHASHLLPCPPNSPGG*LLKKFL Trigger: AAGGAACTTTTTGAGTAATCAGCCACCAGGTGAGTT...CGGTGGACAGGGCAGGAGGTGGCTGGCGTGGGCAGTGGATAGGATAATGGGGGT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000078409.5 |
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| CDS-3UTR GCA 90 bp | AAAACCCCCATTATCCTATCCACTGCCCACGCCAGCCACCTCCTGCCCTGTCCAGGCTTTTCCCATGGATaGTCTCCTTCTTGCCTTCCA | + |
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Preference number: 4 (lower is better) Translates to: KTPIILSTAHASHLLPCPGFSHG*SPSCLP Trigger: TGGAAGGCAAGAAGGAGAGCATCCATGGGAAAAGCC...TGGACAGGGCAGGAGGTGGCTGGCGTGGGCAGTGGATAGGATAATGGGGGTTTT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000078409.5 |
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| CDS-3UTR GCA 90 bp | ATCCACTGCCCACGCCAGCCACCTCCTGCCCTGTCCACCGGCTGTTCTGTCTTGTCTTCACTTTGTAAGTaGCCAAGAATCTTCTTCCGT | + |
|
Preference number: 4 (lower is better) Translates to: IHCPRQPPPALSTGCSVLSSLCK*PRIFFR Trigger: ACGGAAGAAGATTCTTGGGCACTTACAAAGTGAAGA...CAAGACAGAACAGCCGGTGGACAGGGCAGGAGGTGGCTGGCGTGGGCAGTGGAT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078409.5 |
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| CDS-3UTR CCA 90 bp | CCACTGCCCACGCCAGCCACCTCCTGCCCTGTCCACCGGCTGTTCTGTCTTGTTTCAATTTGTTTCCTGTaGCAGACGATAGCATTTTCC | + |
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Preference number: 4 (lower is better) Translates to: PLPTPATSCPVHRLFCLVSICFL*QTIAFS Trigger: GGAAAATGCTATCGTCTGCCACAGGAAACAAATTGA...AACAAGACAGAACAGCCGGTGGACAGGGCAGGAGGTGGCTGGCGTGGGCAGTGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078409.5 |
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| CDS-3UTR CCA 90 bp | CCACTGCCCACGCCAGCCACCTCCTGCCCTGTCCACCGGCTGTTCTGTCTTGTTACTTTGGGAAGAAGATaGATTTTCTCACCACCCAAT | + |
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Preference number: 4 (lower is better) Translates to: PLPTPATSCPVHRLFCLVTLGRR*IFSPPN Trigger: ATTGGGTGGTGAGAAAATCCATCTTCTTCCCAAAGT...AACAAGACAGAACAGCCGGTGGACAGGGCAGGAGGTGGCTGGCGTGGGCAGTGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078409.5 |
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| CDS-3UTR GCA 90 bp | ATCCACTGCCCACGCCAGCCACCTCCTGCCCTGTCCACCGGCTGTTCTGTCTTGTGTAAGCTTATAGTTTaGTGTTTCGGGATCCAGAAT | + |
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Preference number: 4 (lower is better) Translates to: IHCPRQPPPALSTGCSVLCKLIV*CFGIQN Trigger: ATTCTGGATCCCGAAACAGCAAACTATAAGCTTACA...CAAGACAGAACAGCCGGTGGACAGGGCAGGAGGTGGCTGGCGTGGGCAGTGGAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078409.5 |
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| CDS-3UTR GCA 90 bp | ACCCCCATTATCCTATCCACTGCCCACGCCAGCCACCTCCTGCCCTGTCCACCGTTTCTCACCACCCAATaGAACATAAGTTTGGGAATT | + |
|
Preference number: 4 (lower is better) Translates to: TPIILSTAHASHLLPCPPFLTTQ*NISLGI Trigger: AATTCCCAAACTTATGTTGCATTGGGTGGTGAGAAA...CGGTGGACAGGGCAGGAGGTGGCTGGCGTGGGCAGTGGATAGGATAATGGGGGT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000078409.5 |
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| CDS-3UTR CCA 90 bp | CCCATTATCCTATCCACTGCCCACGCCAGCCACCTCCTGCCCTGTCCACCGGCTCAAAAAGTTCCTTCCTaGACAGTTCAAATGACAAGA | + |
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Preference number: 4 (lower is better) Translates to: PIILSTAHASHLLPCPPAQKVPS*TVQMTR Trigger: TCTTGTCATTTGAACTGTCCAGGAAGGAACTTTTTG...AGCCGGTGGACAGGGCAGGAGGTGGCTGGCGTGGGCAGTGGATAGGATAATGGG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000078409.5 |
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| CDS-3UTR CCA 90 bp | ATCCACTGCCCACGCCAGCCACCTCCTGCCCTGTCCACCGGCTGTTCTGTCTTGTCTGACTTTTCACACTaGCTCTTTAGATCTTTCAAC | + |
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Preference number: 4 (lower is better) Translates to: IHCPRQPPPALSTGCSVLSDFSH*LFRSFN Trigger: GTTGAAAGATCTAAAGAGCCAGTGTGAAAAGTCAGA...CAAGACAGAACAGCCGGTGGACAGGGCAGGAGGTGGCTGGCGTGGGCAGTGGAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078409.5 |
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| CDS GCA 90 bp | GCCCACGCCAGCCACCTCCTGCCCTGTTGTGGCTTTTCCCATGGATaGTCTCCTTCTTGCCTTCCACTCCTGCTAGTTCTTTCAGGGGGC | + |
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Preference number: 5 (lower is better) Translates to: AHASHLLPCCGFSHG*SPSCLPLLLVLSGG Trigger: GCCCCCTGAAAGAACTAGCAGGAGTGGAAGGCAAGAAGGAGAGCATCCATGGGAAAAGCCACAACAGGGCAGGAGGTGGCTGGCGTGGGC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000211310.2 |
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| CDS GCA 90 bp | CACCTCCTGCCCTGTTGTGGCTTTTCCCATGGATGCTCTCCTTCTTaGCTTCCACTCCTGCTAGTTCTTTCAGGGGGCAAGATGGCAACT | + |
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Preference number: 5 (lower is better) Translates to: HLLPCCGFSHGCSPS*LPLLLVLSGGKMAT Trigger: AGTTGCCATCTTGCCCCCTGAAAGAACTAGCAGGAGTGGAAGGCAAGAAGGAGAGCATCCATGGGAAAAGCCACAACAGGGCAGGAGGTG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000211310.2 |
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| CDS CCA 90 bp | GGGGAAGCTGCGCAGTGGACAGGAAACCTGTTGTGGCTTTTCCCATaGATGCTCTCCTTCTTGCCTTCCACTCCTGCTAGTTCTTTCAGG | + |
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Preference number: 5 (lower is better) Translates to: GEAAQWTGNLLWLFP*MLSFLPSTPASSFR Trigger: CCTGAAAGAACTAGCAGGAGTGGAAGGCAAGAAGGAGAGCATCCATGGGAAAAGCCACAACAGGTTTCCTGTCCACTGCGCAGCTTCCCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000078409.5 |
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| CDS-3UTR CAA 90 bp | ACCCCCATTATCCTATCCACTGCCCACGCCAGCCACCTCCTGCCCTGTCCACCGAATTTCGCTAGGTTTTaGTTTAGTTTGGATAGCCCA | + |
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Preference number: 5 (lower is better) Translates to: TPIILSTAHASHLLPCPPNFARF*FSLDSP Trigger: TGGGCTATCCAAACTAAACAAAAACCTAGCGAAATT...CGGTGGACAGGGCAGGAGGTGGCTGGCGTGGGCAGTGGATAGGATAATGGGGGT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000078409.5 |
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| CDS GCA 90 bp | GGACAGGAAACCTGTTGTGGCTTTTCCCATGGATGCTCTCCTTCTTaGCTTCCACTCCTGCTAGTTCTTTCAGGGGGCAAGATGGCAACT | + |
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Preference number: 5 (lower is better) Translates to: GQETCCGFSHGCSPS*LPLLLVLSGGKMAT Trigger: AGTTGCCATCTTGCCCCCTGAAAGAACTAGCAGGAGTGGAAGGCAAGAAGGAGAGCATCCATGGGAAAAGCCACAACAGGTTTCCTGTCC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000078409.5 |
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| CDS-3UTR CAA 90 bp | AAAAACCCCCATTATCCTATCCACTGCCCACGCCAGCCACCTCCTGCCCTGTCCATCAACCTCCCAGTATaGTCTGTCAGAACTATATCC | + |
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Preference number: 5 (lower is better) Translates to: KNPHYPIHCPRQPPPALSINLPV*SVRTIS Trigger: GGATATAGTTCTGACAGACAATACTGGGAGGTTGAT...GGACAGGGCAGGAGGTGGCTGGCGTGGGCAGTGGATAGGATAATGGGGGTTTTT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000078409.5 |
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| CDS-3UTR CAA 90 bp | AAAACCCCCATTATCCTATCCACTGCCCACGCCAGCCACCTCCTGCCCTGTCCAAATGTAACAGTCAATTaGTTTCCTGTGGCAGACGAT | + |
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Preference number: 5 (lower is better) Translates to: KTPIILSTAHASHLLPCPNVTVN*FPVADD Trigger: ATCGTCTGCCACAGGAAACAAATTGACTGTTACATT...TGGACAGGGCAGGAGGTGGCTGGCGTGGGCAGTGGATAGGATAATGGGGGTTTT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000078409.5 |
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| CDS-3UTR CAA 90 bp | AAAACCCCCATTATCCTATCCACTGCCCACGCCAGCCACCTCCTGCCCTGTCCACCTATTCTGTTCATATaGAGACCTCACTCTTTCTCT | + |
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Preference number: 5 (lower is better) Translates to: KTPIILSTAHASHLLPCPPILFI*RPHSFS Trigger: AGAGAAAGAGTGAGGTCTCAATATGAACAGAATAGG...TGGACAGGGCAGGAGGTGGCTGGCGTGGGCAGTGGATAGGATAATGGGGGTTTT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000078409.5 |
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| CDS CAA 72 bp | CCTATCCACTGCCCACGCCAGCCACCTCCTGCCCTGTaGTGGCTTTTCCCATGGATGCTCTCCTTCTTGCCT | + |
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Preference number: 6 (lower is better) Translates to: PIHCPRQPPPAL*WLFPWMLSFLP Trigger: AGGCAAGAAGGAGAGCATCCATGGGAAAAGCCACAACAGGGCAGGAGGTGGCTGGCGTGGGCAGTGGATAGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000211310.2 |
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| CDS CAA 90 bp | CCCCATTATCCTATCCACTGCCCACGCCAGCCACCTCCTGCCCTGTaGTGGCTTTTCCCATGGATGCTCTCCTTCTTGCCTTCCACTCCT | + |
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Preference number: 6 (lower is better) Translates to: PHYPIHCPRQPPPAL*WLFPWMLSFLPSTP Trigger: AGGAGTGGAAGGCAAGAAGGAGAGCATCCATGGGAAAAGCCACAACAGGGCAGGAGGTGGCTGGCGTGGGCAGTGGATAGGATAATGGGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000211310.2 |
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| CDS GCA 72 bp | CCATTATCCTATCCACTGCCCACGCCAGCCACCTCCTaGCCTGTTGTGGCTTTTCCCATGGATGCTCTCCTT | + |
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Preference number: 6 (lower is better) Translates to: PLSYPLPTPATS*PVVAFPMDALL Trigger: AAGGAGAGCATCCATGGGAAAAGCCACAACAGGGCAGGAGGTGGCTGGCGTGGGCAGTGGATAGGATAATGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000211310.2 |
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| CDS GCA 72 bp | CTTGAGGTATTCCTTACAGACAGAACAGCGAGCCTCTaGTTGGAGATCGGCCAGCCCTGCAGCAAGCTCCAT | + |
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Preference number: 6 (lower is better) Translates to: LEVFLTDRTASL*LEIGQPCSKLH Trigger: ATGGAGCTTGCTGCAGGGCTGGCCGATCTCCAAGCAGAGGCTCGCTGTTCTGTCTGTAAGGAATACCTCAAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078409.5 |
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| CDS GCA 72 bp | CCCTGTTGTGGCTTTTCCCATGGATGCTCTCCTTCTTaGCTTCCACTCCTGCTAGTTCTTTCAGGGGGCAAG | + |
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Preference number: 6 (lower is better) Translates to: PCCGFSHGCSPS*LPLLLVLSGGK Trigger: CTTGCCCCCTGAAAGAACTAGCAGGAGTGGAAGGCAAGAAGGAGAGCATCCATGGGAAAAGCCACAACAGGG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000211310.2 |
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| CDS GCA 72 bp | AGCCACCTCCTGCCCTGTTGTGGCTTTTCCCATGGATaGTCTCCTTCTTGCCTTCCACTCCTGCTAGTTCTT | + |
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Preference number: 6 (lower is better) Translates to: SHLLPCCGFSHG*SPSCLPLLLVL Trigger: AAGAACTAGCAGGAGTGGAAGGCAAGAAGGAGAGCATCCATGGGAAAAGCCACAACAGGGCAGGAGGTGGCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000211310.2 |
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| CDS CCA 72 bp | GCGCAGTGGACAGGAAACCTGTTGTGGCTTTTCCCATaGATGCTCTCCTTCTTGCCTTCCACTCCTGCTAGT | + |
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Preference number: 6 (lower is better) Translates to: AQWTGNLLWLFP*MLSFLPSTPAS Trigger: ACTAGCAGGAGTGGAAGGCAAGAAGGAGAGCATCCATGGGAAAAGCCACAACAGGTTTCCTGTCCACTGCGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078409.5 |
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| CDS CAA 72 bp | GCCCTGTTGTGGCTTTTCCCATGGATGCTCTCCTTCTaGCCTTCCACTCCTGCTAGTTCTTTCAGGGGGCAA | + |
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Preference number: 6 (lower is better) Translates to: ALLWLFPWMLSF*PSTPASSFRGQ Trigger: TTGCCCCCTGAAAGAACTAGCAGGAGTGGAAGGCAAGAAGGAGAGCATCCATGGGAAAAGCCACAACAGGGC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000211310.2 |
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| CDS GCA 72 bp | ACCTGTTGTGGCTTTTCCCATGGATGCTCTCCTTCTTaGCTTCCACTCCTGCTAGTTCTTTCAGGGGGCAAG | + |
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Preference number: 6 (lower is better) Translates to: TCCGFSHGCSPS*LPLLLVLSGGK Trigger: CTTGCCCCCTGAAAGAACTAGCAGGAGTGGAAGGCAAGAAGGAGAGCATCCATGGGAAAAGCCACAACAGGT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000078409.5 |
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| CDS GCA 72 bp | CTGAGAACTGTTCATCAGAGAACCGTTCGGCATACCTaGTCCTGGGAAAAGGCTCCCTACAGACCCCTAGAA | + |
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Preference number: 6 (lower is better) Translates to: LRTVHQRTVRHT*SWEKAPYRPLE Trigger: TTCTAGGGGTCTGTAGGGAGCCTTTTCCCAGGAGCAGGTATGCCGAACGGTTCTCTGATGAACAGTTCTCAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000078409.5 |
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| CDS CCA 72 bp | TCCCAGAACACACTGGTGCAGGACAGACAGACTTTATaGCCACACTCCATGGTCCCTGGGTTCTTGAGGTAT | + |
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Preference number: 6 (lower is better) Translates to: SQNTLVQDRQTL*PHSMVPGFLRY Trigger: ATACCTCAAGAACCCAGGGACCATGGAGTGTGGCCATAAAGTCTGTCTGTCCTGCACCAGTGTGTTCTGGGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078409.5 |
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| CDS CCA 72 bp | ACTGTTCATCAGAGAACCGTTCGGCATACCTGCTCCTaGGAAAAGGCTCCCTACAGACCCCTAGAACCCATT | + |
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Preference number: 6 (lower is better) Translates to: TVHQRTVRHTCS*EKAPYRPLEPI Trigger: AATGGGTTCTAGGGGTCTGTAGGGAGCCTTTTCCCAGGAGCAGGTATGCCGAACGGTTCTCTGATGAACAGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000078409.5 |
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| CDS TCA 72 bp | AGACTTTATGGCCACACTCCATGGTCCCTGGGTTCTTaGGGTATTCCTTACAGACAGAACAGCGAGCCTCTG | + |
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Preference number: 6 (lower is better) Translates to: RLYGHTPWSLGS*GIPYRQNSEPL Trigger: CAGAGGCTCGCTGTTCTGTCTGTAAGGAATACCTCAAGAACCCAGGGACCATGGAGTGTGGCCATAAAGTCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078409.5 |
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| CDS CAA 72 bp | CAGACTTTATGGCCACACTCCATGGTCCCTGGGTTCTaGAGGTATTCCTTACAGACAGAACAGCGAGCCTCT | + |
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Preference number: 6 (lower is better) Translates to: QTLWPHSMVPGF*RYSLQTEQRAS Trigger: AGAGGCTCGCTGTTCTGTCTGTAAGGAATACCTCAAGAACCCAGGGACCATGGAGTGTGGCCATAAAGTCTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078409.5 |
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| CDS CAA 72 bp | AACCTGTTGTGGCTTTTCCCATGGATGCTCTCCTTCTaGCCTTCCACTCCTGCTAGTTCTTTCAGGGGGCAA | + |
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Preference number: 6 (lower is better) Translates to: NLLWLFPWMLSF*PSTPASSFRGQ Trigger: TTGCCCCCTGAAAGAACTAGCAGGAGTGGAAGGCAAGAAGGAGAGCATCCATGGGAAAAGCCACAACAGGTT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000078409.5 |
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| CDS GCA 72 bp | AGTGGACAGGAAACCTGTTGTGGCTTTTCCCATGGATaGTCTCCTTCTTGCCTTCCACTCCTGCTAGTTCTT | + |
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Preference number: 6 (lower is better) Translates to: SGQETCCGFSHG*SPSCLPLLLVL Trigger: AAGAACTAGCAGGAGTGGAAGGCAAGAAGGAGAGCATCCATGGGAAAAGCCACAACAGGTTTCCTGTCCACT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078409.5 |
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| CDS CAA 90 bp | GATTGGCTCCACCATCTCCCTCCACAGCTTAATGTAACAGTCAATTaGTTTCCTGTGGCAGACGATAGCATTTTCCACGGGCCAAACAAA | + |
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Preference number: 6 (lower is better) Translates to: DWLHHLPPQLNVTVN*FPVADDSIFHGPNK Trigger: TTTGTTTGGCCCGTGGAAAATGCTATCGTCTGCCACAGGAAACAAATTGACTGTTACATTAAGCTGTGGAGGGAGATGGTGGAGCCAATC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078409.5 |
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| CDS CAA 90 bp | TACCCTTTCAATGTTACTAAGGCCATCTCAGGCCATCCCGACTGTTaGTATCTCTCGTACCAATCTTTAACACTTGCCAGCAATGCCAGC | + |
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Preference number: 6 (lower is better) Translates to: YPFNVTKAISGHPDC*YLSYQSLTLASNAS Trigger: GCTGGCATTGCTGGCAAGTGTTAAAGATTGGTACGAGAGATACAAACAGTCGGGATGGCCTGAGATGGCCTTAGTAACATTGAAAGGGTA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078409.5 |
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| CDS TCA 72 bp | GGCAAGATGGCAACTTCGGTGAACTCACCTGGTGGCTaGTTACTCAAAAAGTTCCTTCCTGGACAGTTCAAA | + |
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Preference number: 6 (lower is better) Translates to: GKMATSVNSPGG*LLKKFLPGQFK Trigger: TTTGAACTGTCCAGGAAGGAACTTTTTGAGTAATCAGCCACCAGGTGAGTTCACCGAAGTTGCCATCTTGCC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000078409.5 ENSMUST00000211310.2 |
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| CDS CAA 72 bp | CACCATCTCCCTCCACAGCTTAATGTAACAGTCAATTaGTTTCCTGTGGCAGACGATAGCATTTTCCACGGG | + |
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Preference number: 6 (lower is better) Translates to: HHLPPQLNVTVN*FPVADDSIFHG Trigger: CCCGTGGAAAATGCTATCGTCTGCCACAGGAAACAAATTGACTGTTACATTAAGCTGTGGAGGGAGATGGTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078409.5 |
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| CDS GCA 72 bp | AGTTTGGATAGCCCATCCATCTCTTCACTTTGTAAGTaGCCAAGAATCTTCTTCCGTTCAACCTGGAGGAAC | + |
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Preference number: 6 (lower is better) Translates to: SLDSPSISSLCK*PRIFFRSTWRN Trigger: GTTCCTCCAGGTTGAACGGAAGAAGATTCTTGGGCACTTACAAAGTGAAGAGATGGATGGGCTATCCAAACT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078409.5 |
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| CDS CCA 72 bp | CGATCCTTTCCTTTGTGTGCTAATTGCTTTCTGGATTaGCTCCACCATCTCCCTCCACAGCTTAATGTAACA | + |
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Preference number: 6 (lower is better) Translates to: RSFPLCANCFLD*LHHLPPQLNVT Trigger: TGTTACATTAAGCTGTGGAGGGAGATGGTGGAGCCAATCCAGAAAGCAATTAGCACACAAAGGAAAGGATCG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078409.5 |
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| CDS CAA 72 bp | AATGTTACTAAGGCCATCTCAGGCCATCCCGACTGTTaGTATCTCTCGTACCAATCTTTAACACTTGCCAGC | + |
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Preference number: 6 (lower is better) Translates to: NVTKAISGHPDC*YLSYQSLTLAS Trigger: GCTGGCAAGTGTTAAAGATTGGTACGAGAGATACAAACAGTCGGGATGGCCTGAGATGGCCTTAGTAACATT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078409.5 |
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| CDS CCA 72 bp | ACACTTGCCAGCAATGCCAGCTCTGACTTTTCACACTaGCTCTTTAGATCTTTCAACAGACTCTTTAACAAG | + |
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Preference number: 6 (lower is better) Translates to: TLASNASSDFSH*LFRSFNRLFNK Trigger: CTTGTTAAAGAGTCTGTTGAAAGATCTAAAGAGCCAGTGTGAAAAGTCAGAGCTGGCATTGCTGGCAAGTGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078409.5 |
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