Pregenerated sensors for TRIM60 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000053490Ensembl transcript IDs: ENSMUST00000048565.9
Found 59 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | TTTATTGTGTATGGCATGAGGGGAAGTGTGTGTGCAGGCAGAGGCTaGGGACAACCTCAGCTGCCATCCCAGGGTCACATATTGGCTTGG | + |
|
Preference number: 1 (lower is better) Translates to: FIVYGMRGSVCAGRG*GQPQLPSQGHILAW Trigger: CCAAGCCAATATGTGACCCTGGGATGGCAGCTGAGGTTGTCCTCAGCCTCTGCCTGCACACACACTTCCCCTCATGCCATACACAATAAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048565.9 |
||
| 3UTR TCA 90 bp | TGCATGAGGTCTCCTATCTTAACATACAGTGGTTACTTCAATGAATaGAATGTCCACTCACACAGGTCAAGCCGGTTCATCTTCAGTTTG | + |
|
Preference number: 1 (lower is better) Translates to: CMRSPILTYSGYFNE*NVHSHRSSRFIFSL Trigger: CAAACTGAAGATGAACCGGCTTGACCTGTGTGAGTGGACATTTCATTCATTGAAGTAACCACTGTATGTTAAGATAGGAGACCTCATGCA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048565.9 |
||
| 3UTR GCA 90 bp | ATTTTTAAATTGTTGGTGTGCTTATATGATATGTGTGTGTTCTTGTaGGTGAGGATGGACATGACAAGCTATAGGGTACATGCTCAGGGT | + |
|
Preference number: 1 (lower is better) Translates to: IFKLLVCLYDMCVFL*VRMDMTSYRVHAQG Trigger: ACCCTGAGCATGTACCCTATAGCTTGTCATGTCCATCCTCACGCACAAGAACACACACATATCATATAAGCACACCAACAATTTAAAAAT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000048565.9 |
||
| 3UTR-3UTR CCA 90 bp | TCTGTTGTTAGACATAGCGTCCTGAGGGCTGGGATGCCACCTAGCCCAACAAAACTGGGGGTGCTAGGATaGGGCAGGCATGTGTCACAC | + |
|
Preference number: 2 (lower is better) Translates to: SVVRHSVLRAGMPPSPTKLGVLG*GRHVSH Trigger: GTGTGACACATGCCTGCCCCATCCTAGCACCCCCAG...TTTTGTTGGGCTAGGTGGCATCCCAGCCCTCAGGACGCTATGTCTAACAACAGA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000048565.9 |
||
| 3UTR-3UTR CCA 90 bp | CAGCAGCTCTTCCTTAAATCACTGCCAATTCGGTGCCTCTTCCCCAATATTCTAGGGCTGCCTTACTCTTaGTACCTAAATCTCTGGGGG | + |
|
Preference number: 2 (lower is better) Translates to: QQLFLKSLPIRCLFPNILGLPYS*YLNLWG Trigger: CCCCCAGAGATTTAGGTACCAAGAGTAAGGCAGCCC...TAGAATATTGGGGAAGAGGCACCGAATTGGCAGTGATTTAAGGAAGAGCTGCTG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048565.9 |
||
| 3UTR-3UTR CCA 90 bp | ACCCTACCTCCTATTGGCTGTTCTAACCCATCTTCTCAGTCACTAATCCTTCACCCCAGGGTCACATATTaGCTTGGGCTGCCTTACTCT | + |
|
Preference number: 2 (lower is better) Translates to: TLPPIGCSNPSSQSLILHPRVTY*LGLPYS Trigger: AGAGTAAGGCAGCCCAAGCCAATATGTGACCCTGGG...GTGAAGGATTAGTGACTGAGAAGATGGGTTAGAACAGCCAATAGGAGGTAGGGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048565.9 |
||
| 3UTR-3UTR TCA 90 bp | TCTGTTGTTAGACATAGCGTCCTGAGGGCTGGGATGCCACCTAGCCCAACAAAAGGTTACTTCAATGAATaGAATGTCCACTCACACAGG | + |
|
Preference number: 2 (lower is better) Translates to: SVVRHSVLRAGMPPSPTKGYFNE*NVHSHR Trigger: CCTGTGTGAGTGGACATTTCATTCATTGAAGTAACC...TTTTGTTGGGCTAGGTGGCATCCCAGCCCTCAGGACGCTATGTCTAACAACAGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048565.9 |
||
| 3UTR-3UTR CCA 90 bp | AGCAGCAGCTCTTCCTTAAATCACTGCCAATTCGGTGCCTCTTCCCCAATATTCGGGTCTTGTGGGTGGTaGATTTTGTTGTTTGTTTGC | + |
|
Preference number: 2 (lower is better) Translates to: SSSSSLNHCQFGASSPIFGSCGW*ILLFVC Trigger: GCAAACAAACAACAAAATCCACCACCCACAAGACCC...GAATATTGGGGAAGAGGCACCGAATTGGCAGTGATTTAAGGAAGAGCTGCTGCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048565.9 |
||
| 3UTR-3UTR CCA 90 bp | AGCAGCAGCTCTTCCTTAAATCACTGCCAATTCGGTGCCTCTTCCCCAATATTCCAGTCTGGTTTTCAGTaGTTAAATTTAGAAGACTTG | + |
|
Preference number: 2 (lower is better) Translates to: SSSSSLNHCQFGASSPIFQSGFQ*LNLEDL Trigger: CAAGTCTTCTAAATTTAACCACTGAAAACCAGACTG...GAATATTGGGGAAGAGGCACCGAATTGGCAGTGATTTAAGGAAGAGCTGCTGCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048565.9 |
||
| 3UTR CAA 90 bp | CTCATTTTTAAATTGTTGGTGTGCTTATATGATATGTGTGTGTTCTaGTGCGTGAGGATGGACATGACAAGCTATAGGGTACATGCTCAG | + |
|
Preference number: 2 (lower is better) Translates to: LIFKLLVCLYDMCVF*CVRMDMTSYRVHAQ Trigger: CTGAGCATGTACCCTATAGCTTGTCATGTCCATCCTCACGCACAAGAACACACACATATCATATAAGCACACCAACAATTTAAAAATGAG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000048565.9 |
||
| 3UTR TCA 72 bp | TATGGCATGAGGGGAAGTGTGTGTGCAGGCAGAGGCTaGGGACAACCTCAGCTGCCATCCCAGGGTCACATA | + |
|
Preference number: 3 (lower is better) Translates to: YGMRGSVCAGRG*GQPQLPSQGHI Trigger: TATGTGACCCTGGGATGGCAGCTGAGGTTGTCCTCAGCCTCTGCCTGCACACACACTTCCCCTCATGCCATA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048565.9 |
||
| 3UTR CCA 72 bp | TTACTCTTGGTACCTAAATCTCTGGGGGTGCTAGGATaGGGCAGGCATGTGTCACACTTGTGGCAGCCATCA | + |
|
Preference number: 3 (lower is better) Translates to: LLLVPKSLGVLG*GRHVSHLWQPS Trigger: TGATGGCTGCCACAAGTGTGACACATGCCTGCCCCATCCTAGCACCCCCAGAGATTTAGGTACCAAGAGTAA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000048565.9 |
||
| 3UTR-3UTR CAA 90 bp | ACAGGTCAAGCCGGTTCATCTTCAGTTTGTCTCCTAAATAGGGCAGCAGCAGCTTGGGCTGCCTTACTCTaGGTACCTAAATCTCTGGGG | + |
|
Preference number: 3 (lower is better) Translates to: TGQAGSSSVCLLNRAAAAWAALL*VPKSLG Trigger: CCCCAGAGATTTAGGTACCAAGAGTAAGGCAGCCCA...AGCTGCTGCTGCCCTATTTAGGAGACAAACTGAAGATGAACCGGCTTGACCTGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048565.9 |
||
| 3UTR-3UTR CAA 90 bp | TCAGCTGCCATCCCAGGGTCACATATTGGCTTGGGCTGCCTTACTCTTGGTACCGGGTGGTGGATTTTGTaGTTTGTTTGCTTGCTGAAT | + |
|
Preference number: 3 (lower is better) Translates to: SAAIPGSHIGLGCLTLGTGWWIL*FVCLLN Trigger: ATTCAGCAAGCAAACAAACAACAAAATCCACCACCC...GGTACCAAGAGTAAGGCAGCCCAAGCCAATATGTGACCCTGGGATGGCAGCTGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048565.9 |
||
| 3UTR CCA 72 bp | ACCTTGTGTTCGATTTCCCAACCCAGTACTGAGGATTaGACCCTGGGCATAAGGCAGTCATACATTCTACCT | + |
|
Preference number: 3 (lower is better) Translates to: TLCSISQPSTED*TLGIRQSYILP Trigger: AGGTAGAATGTATGACTGCCTTATGCCCAGGGTCCAATCCTCAGTACTGGGTTGGGAAATCGAACACAAGGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048565.9 |
||
| 3UTR-3UTR CAA 90 bp | CAGCAGCTCTTCCTTAAATCACTGCCAATTCGGTGCCTCTTCCCCAATATTCTATGTGGGTGGTGGATTTaGTTGTTTGTTTGCTTGCTG | + |
|
Preference number: 3 (lower is better) Translates to: QQLFLKSLPIRCLFPNILCGWWI*LFVCLL Trigger: CAGCAAGCAAACAAACAACAAAATCCACCACCCACA...TAGAATATTGGGGAAGAGGCACCGAATTGGCAGTGATTTAAGGAAGAGCTGCTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048565.9 |
||
| 3UTR-3UTR CAA 90 bp | TGCTTATATGATATGTGTGTGTTCTTGTGCGTGAGGATGGACATGACAAGCTATAGGCATGTGTCACACTaGTGGCAGCCATCATGTTCT | + |
|
Preference number: 3 (lower is better) Translates to: CLYDMCVFLCVRMDMTSYRHVSH*WQPSCS Trigger: AGAACATGATGGCTGCCACAAGTGTGACACATGCCT...ATAGCTTGTCATGTCCATCCTCACGCACAAGAACACACACATATCATATAAGCA 44% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048565.9 |
||
| 3UTR GCA 72 bp | CAGCAGCAGCTCTTCCTTAAATCACTGCCAATTCGGTaGCTCTTCCCCAATATTCTATTTTCTGACATGCAT | + |
|
Preference number: 3 (lower is better) Translates to: QQQLFLKSLPIR*LFPNILFSDMH Trigger: ATGCATGTCAGAAAATAGAATATTGGGGAAGAGGCACCGAATTGGCAGTGATTTAAGGAAGAGCTGCTGCTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048565.9 |
||
| 3UTR TCA 72 bp | GAGGTCTCCTATCTTAACATACAGTGGTTACTTCAATaGATGAAATGTCCACTCACACAGGTCAAGCCGGTT | + |
|
Preference number: 3 (lower is better) Translates to: EVSYLNIQWLLQ*MKCPLTQVKPV Trigger: AACCGGCTTGACCTGTGTGAGTGGACATTTCATTCATTGAAGTAACCACTGTATGTTAAGATAGGAGACCTC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048565.9 |
||
| 3UTR TCA 72 bp | TCTCCTATCTTAACATACAGTGGTTACTTCAATGAATaGAATGTCCACTCACACAGGTCAAGCCGGTTCATC | + |
|
Preference number: 3 (lower is better) Translates to: SPILTYSGYFNE*NVHSHRSSRFI Trigger: GATGAACCGGCTTGACCTGTGTGAGTGGACATTTCATTCATTGAAGTAACCACTGTATGTTAAGATAGGAGA 42% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048565.9 |
||
| 3UTR CAA 72 bp | TCCCAGGGTCACATATTGGCTTGGGCTGCCTTACTCTaGGTACCTAAATCTCTGGGGGTGCTAGGATGGGGC | + |
|
Preference number: 4 (lower is better) Translates to: SQGHILAWAALL*VPKSLGVLGWG Trigger: GCCCCATCCTAGCACCCCCAGAGATTTAGGTACCAAGAGTAAGGCAGCCCAAGCCAATATGTGACCCTGGGA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000048565.9 |
||
| CDS-3UTR TCA 90 bp | TCTGTTGTTAGACATAGCGTCCTGAGGGCTGGGATGCCACCTAGCCCAACAAAACCAGAAAAGTGGGCTTaGCACACACCCAGTGTCCAT | + |
|
Preference number: 4 (lower is better) Translates to: SVVRHSVLRAGMPPSPTKPEKWA*HTPSVH Trigger: ATGGACACTGGGTGTGTGTCAAGCCCACTTTTCTGG...TTTTGTTGGGCTAGGTGGCATCCCAGCCCTCAGGACGCTATGTCTAACAACAGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048565.9 |
||
| CDS-3UTR CCA 90 bp | GTGTGCAGGCAGAGGCTGAGGACAACCTCAGCTGCCATCCCAGGGTCACATATTCTGACCTTTCATGTATaGCCTCCACTTCCTTCAACA | + |
|
Preference number: 4 (lower is better) Translates to: VCRQRLRTTSAAIPGSHILTFHV*PPLPST Trigger: TGTTGAAGGAAGTGGAGGCCATACATGAAAGGTCAG...AATATGTGACCCTGGGATGGCAGCTGAGGTTGTCCTCAGCCTCTGCCTGCACAC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048565.9 |
||
| CDS-3UTR GCA 90 bp | AGCAGCAGCTCTTCCTTAAATCACTGCCAATTCGGTGCCTCTTCCCCAATATTCCTCAAGCCAGAATACTaGGCTGGGAGACTGAGGCCA | + |
|
Preference number: 4 (lower is better) Translates to: SSSSSLNHCQFGASSPIFLKPEY*AGRLRP Trigger: TGGCCTCAGTCTCCCAGCGCAGTATTCTGGCTTGAG...GAATATTGGGGAAGAGGCACCGAATTGGCAGTGATTTAAGGAAGAGCTGCTGCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048565.9 |
||
| CDS-3UTR TCA 90 bp | CAGCAGCTCTTCCTTAAATCACTGCCAATTCGGTGCCTCTTCCCCAATATTCTAACTGCGCTGGGAGACTaGGGCCATATTGCTTTGTCC | + |
|
Preference number: 4 (lower is better) Translates to: QQLFLKSLPIRCLFPNILTALGD*GHIALS Trigger: GGACAAAGCAATATGGCCTCAGTCTCCCAGCGCAGT...TAGAATATTGGGGAAGAGGCACCGAATTGGCAGTGATTTAAGGAAGAGCTGCTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048565.9 |
||
| CDS-3UTR CCA 90 bp | AGCAGCAGCTCTTCCTTAAATCACTGCCAATTCGGTGCCTCTTCCCCAATATTCGCCAGAATACTGCGCTaGGAGACTGAGGCCATATTG | + |
|
Preference number: 4 (lower is better) Translates to: SSSSSLNHCQFGASSPIFARILR*ETEAIL Trigger: CAATATGGCCTCAGTCTCCCAGCGCAGTATTCTGGC...GAATATTGGGGAAGAGGCACCGAATTGGCAGTGATTTAAGGAAGAGCTGCTGCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048565.9 |
||
| CDS-3UTR TCA 90 bp | AGCAGCAGCTCTTCCTTAAATCACTGCCAATTCGGTGCCTCTTCCCCAATATTCCAGGAGTGTGACATCTaGCCTTTCATGTATGGCCTC | + |
|
Preference number: 4 (lower is better) Translates to: SSSSSLNHCQFGASSPIFQECDI*PFMYGL Trigger: GAGGCCATACATGAAAGGTCAGATGTCACACTCCTG...GAATATTGGGGAAGAGGCACCGAATTGGCAGTGATTTAAGGAAGAGCTGCTGCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048565.9 |
||
| CDS-3UTR TCA 90 bp | AGCAGCAGCTCTTCCTTAAATCACTGCCAATTCGGTGCCTCTTCCCCAATATTCATATCCATTCAGTTCTaGGAAACTCCGCAGCTCCTC | + |
|
Preference number: 4 (lower is better) Translates to: SSSSSLNHCQFGASSPIFISIQF*ETPQLL Trigger: GAGGAGCTGCGGAGTTTCTCAGAACTGAATGGATAT...GAATATTGGGGAAGAGGCACCGAATTGGCAGTGATTTAAGGAAGAGCTGCTGCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048565.9 |
||
| CDS-3UTR TCA 90 bp | CAGCAGCTCTTCCTTAAATCACTGCCAATTCGGTGCCTCTTCCCCAATATTCTATCAGAAATAACCAGCTaGGGGTGTGCTGTGTCACGA | + |
|
Preference number: 4 (lower is better) Translates to: QQLFLKSLPIRCLFPNILSEITS*GCAVSR Trigger: TCGTGACACAGCACACCCTCAGCTGGTTATTTCTGA...TAGAATATTGGGGAAGAGGCACCGAATTGGCAGTGATTTAAGGAAGAGCTGCTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048565.9 |
||
| CDS-3UTR TCA 90 bp | CAGCAGCTCTTCCTTAAATCACTGCCAATTCGGTGCCTCTTCCCCAATATTCTAAATTGCCCAGAAACCTaGGGACTGATTGCTCCAGTC | + |
|
Preference number: 4 (lower is better) Translates to: QQLFLKSLPIRCLFPNILNCPET*GLIAPV Trigger: GACTGGAGCAATCAGTCCTCAGGTTTCTGGGCAATT...TAGAATATTGGGGAAGAGGCACCGAATTGGCAGTGATTTAAGGAAGAGCTGCTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048565.9 |
||
| CDS-3UTR GCA 90 bp | AGCAGCAGCTCTTCCTTAAATCACTGCCAATTCGGTGCCTCTTCCCCAATATTCCGGGACAGAAGATGTTaGCTTGTAGATCATCCCAGA | + |
|
Preference number: 4 (lower is better) Translates to: SSSSSLNHCQFGASSPIFRDRRC*LVDHPR Trigger: TCTGGGATGATCTACAAGGCAACATCTTCTGTCCCG...GAATATTGGGGAAGAGGCACCGAATTGGCAGTGATTTAAGGAAGAGCTGCTGCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048565.9 |
||
| CDS-3UTR GCA 90 bp | AGCAGCAGCTCTTCCTTAAATCACTGCCAATTCGGTGCCTCTTCCCCAATATTCAACCTGAGGACTGATTaGTCCAGTCCCCAGAAAAGT | + |
|
Preference number: 4 (lower is better) Translates to: SSSSSLNHCQFGASSPIFNLRTD*SSPQKS Trigger: ACTTTTCTGGGGACTGGAGCAATCAGTCCTCAGGTT...GAATATTGGGGAAGAGGCACCGAATTGGCAGTGATTTAAGGAAGAGCTGCTGCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000048565.9 |
||
| CDS-3UTR CCA 90 bp | TCTGTTGTTAGACATAGCGTCCTGAGGGCTGGGATGCCACCTAGCCCAACAAAAACAGATCTTTTGCTGTaGAAACATGGTCTAACAGGG | + |
|
Preference number: 4 (lower is better) Translates to: SVVRHSVLRAGMPPSPTKTDLLL*KHGLTG Trigger: CCCTGTTAGACCATGTTTCCACAGCAAAAGATCTGT...TTTTGTTGGGCTAGGTGGCATCCCAGCCCTCAGGACGCTATGTCTAACAACAGA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000048565.9 |
||
| CDS-3UTR CCA 90 bp | ACCCTACCTCCTATTGGCTGTTCTAACCCATCTTCTCAGTCACTAATCCTTCACACCCTGTGTCTGGGGTaGGGTGGGTTAAGATTTCAA | + |
|
Preference number: 4 (lower is better) Translates to: TLPPIGCSNPSSQSLILHTLCLG*GGLRFQ Trigger: TTGAAATCTTAACCCACCCCACCCCAGACACAGGGT...GTGAAGGATTAGTGACTGAGAAGATGGGTTAGAACAGCCAATAGGAGGTAGGGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048565.9 |
||
| CDS-3UTR CCA 90 bp | TCTGTTGTTAGACATAGCGTCCTGAGGGCTGGGATGCCACCTAGCCCAACAAAAGCTAGCACACACACATaGCCATGCTTCTTTATAAAA | + |
|
Preference number: 4 (lower is better) Translates to: SVVRHSVLRAGMPPSPTKASTHT*PCFFIK Trigger: TTTTATAAAGAAGCATGGCCATGTGTGTGTGCTAGC...TTTTGTTGGGCTAGGTGGCATCCCAGCCCTCAGGACGCTATGTCTAACAACAGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048565.9 |
||
| CDS-3UTR CCA 90 bp | ACCCTACCTCCTATTGGCTGTTCTAACCCATCTTCTCAGTCACTAATCCTTCACGTGTCTGGGGTGGGGTaGGTTAAGATTTCAAGAGAT | + |
|
Preference number: 4 (lower is better) Translates to: TLPPIGCSNPSSQSLILHVSGVG*VKISRD Trigger: ATCTCTTGAAATCTTAACCCACCCCACCCCAGACAC...GTGAAGGATTAGTGACTGAGAAGATGGGTTAGAACAGCCAATAGGAGGTAGGGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048565.9 |
||
| CDS-3UTR TCA 90 bp | TGCTTATATGATATGTGTGTGTTCTTGTGCGTGAGGATGGACATGACAAGCTATGCTTGTCTCCCACTTTaGCTTCCCAGTACTGTCGAC | + |
|
Preference number: 4 (lower is better) Translates to: CLYDMCVFLCVRMDMTSYACLPL*LPSTVD Trigger: GTCGACAGTACTGGGAAGTCAAAGTGGGAGACAAGC...ATAGCTTGTCATGTCCATCCTCACGCACAAGAACACACACATATCATATAAGCA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048565.9 |
||
| CDS-3UTR GCA 90 bp | ACAGGTCAAGCCGGTTCATCTTCAGTTTGTCTCCTAAATAGGGCAGCAGCAGCTACACACACATGGCCATaGTTCTTTATAAAACACAGA | + |
|
Preference number: 4 (lower is better) Translates to: TGQAGSSSVCLLNRAAAATHTWP*FFIKHR Trigger: TCTGTGTTTTATAAAGAAGCATGGCCATGTGTGTGT...AGCTGCTGCTGCCCTATTTAGGAGACAAACTGAAGATGAACCGGCTTGACCTGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048565.9 |
||
| CDS-3UTR GCA 90 bp | AACCCATCTTCTCAGTCACTAATCCTTCACATAGTGCATGAGGTCTCCTATCTTAGAACCCTTCTGTGCTaGACAGCTAGCTTTTCTTCA | + |
|
Preference number: 4 (lower is better) Translates to: NPSSQSLILHIVHEVSYLRTLLC*TASFSS Trigger: TGAAGAAAAGCTAGCTGTGCAGCACAGAAGGGTTCT...AAGATAGGAGACCTCATGCACTATGTGAAGGATTAGTGACTGAGAAGATGGGTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048565.9 |
||
| CDS-3UTR GCA 90 bp | TGCTTATATGATATGTGTGTGTTCTTGTGCGTGAGGATGGACATGACAAGCTATAACCAGCTGAGGGTGTaGTGTGTCACGATCAAAAGT | + |
|
Preference number: 4 (lower is better) Translates to: CLYDMCVFLCVRMDMTSYNQLRV*CVTIKS Trigger: ACTTTTGATCGTGACACAGCACACCCTCAGCTGGTT...ATAGCTTGTCATGTCCATCCTCACGCACAAGAACACACACATATCATATAAGCA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048565.9 |
||
| CDS-3UTR CCA 90 bp | TGCTTATATGATATGTGTGTGTTCTTGTGCGTGAGGATGGACATGACAAGCTATACACCTACTGGTCACTaGGTCTTCCATGAAATCCGA | + |
|
Preference number: 4 (lower is better) Translates to: CLYDMCVFLCVRMDMTSYTPTGH*VFHEIR Trigger: TCGGATTTCATGGAAGACCCAGTGACCAGTAGGTGT...ATAGCTTGTCATGTCCATCCTCACGCACAAGAACACACACATATCATATAAGCA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048565.9 |
||
| CDS-3UTR GCA 90 bp | TGCTTATATGATATGTGTGTGTTCTTGTGCGTGAGGATGGACATGACAAGCTATCAGATACATTTGTCCTaGAAGATTTTTAGGGCTGTG | + |
|
Preference number: 4 (lower is better) Translates to: CLYDMCVFLCVRMDMTSYQIHLS*KIFRAV Trigger: CACAGCCCTAAAAATCTTGCAGGACAAATGTATCTG...ATAGCTTGTCATGTCCATCCTCACGCACAAGAACACACACATATCATATAAGCA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000048565.9 |
||
| CDS-3UTR GCA 90 bp | TGCTTATATGATATGTGTGTGTTCTTGTGCGTGAGGATGGACATGACAAGCTATAGACTGAGGCCATATTaGTTTGTCCTAAATAACCAC | + |
|
Preference number: 4 (lower is better) Translates to: CLYDMCVFLCVRMDMTSYRLRPY*FVLNNH Trigger: GTGGTTATTTAGGACAAAGCAATATGGCCTCAGTCT...ATAGCTTGTCATGTCCATCCTCACGCACAAGAACACACACATATCATATAAGCA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048565.9 |
||
| 3UTR CAA 72 bp | AAATTGTTGGTGTGCTTATATGATATGTGTGTGTTCTaGTGCGTGAGGATGGACATGACAAGCTATAGGGTA | + |
|
Preference number: 4 (lower is better) Translates to: KLLVCLYDMCVF*CVRMDMTSYRV Trigger: TACCCTATAGCTTGTCATGTCCATCCTCACGCACAAGAACACACACATATCATATAAGCACACCAACAATTT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048565.9 |
||
| CDS GCA 90 bp | TATTCTCAGCATACCGCCCAATTGCCCAGAAACCTGAGGACTGATTaGTCCAGTCCCCAGAAAAGTGGGCTTGACACACACCCAGTGTCC | + |
|
Preference number: 5 (lower is better) Translates to: YSQHTAQLPRNLRTD*SSPQKSGLDTHPVS Trigger: GGACACTGGGTGTGTGTCAAGCCCACTTTTCTGGGGACTGGAGCAATCAGTCCTCAGGTTTCTGGGCAATTGGGCGGTATGCTGAGAATA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048565.9 |
||
| CDS TCA 90 bp | TGGGTCGCACCACTGGCAGAAACTCCGTTCTTAGAGGTCCATAGGTaGCATAACTATTCTCAGCATACCGCCCAATTGCCCAGAAACCTG | + |
|
Preference number: 5 (lower is better) Translates to: WVAPLAETPFLEVHR*HNYSQHTAQLPRNL Trigger: CAGGTTTCTGGGCAATTGGGCGGTATGCTGAGAATAGTTATGTCACCTATGGACCTCTAAGAACGGAGTTTCTGCCAGTGGTGCGACCCA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048565.9 |
||
| CDS-3UTR CAA 90 bp | ACAGGTCAAGCCGGTTCATCTTCAGTTTGTCTCCTAAATAGGGCAGCAGCAGCTAGTGTCCATCTGGGCTaGTCTCCCACTTTGACTTCC | + |
|
Preference number: 5 (lower is better) Translates to: TGQAGSSSVCLLNRAAAASVHLG*SPTLTS Trigger: GGAAGTCAAAGTGGGAGACAAGCCCAGATGGACACT...AGCTGCTGCTGCCCTATTTAGGAGACAAACTGAAGATGAACCGGCTTGACCTGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048565.9 |
||
| CDS TCA 90 bp | GTACATAAGACATCCCGATCCCTCACACAGAACAAGACCAGAGGCTaGTCATGCTTCGGACATACTGTGTGTTCTTCCTGCCTCTTCCTC | + |
|
Preference number: 5 (lower is better) Translates to: VHKTSRSLTQNKTRG*SCFGHTVCSSCLFL Trigger: GAGGAAGAGGCAGGAAGAACACACAGTATGTCCGAAGCATGATCAGCCTCTGGTCTTGTTCTGTGTGAGGGATCGGGATGTCTTATGTAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048565.9 |
||
| CDS-3UTR CAA 90 bp | ACAGGTCAAGCCGGTTCATCTTCAGTTTGTCTCCTAAATAGGGCAGCAGCAGCTGGGGGATTTAAGGTTTaGCAACTTGTGGTAGGCTCT | + |
|
Preference number: 5 (lower is better) Translates to: TGQAGSSSVCLLNRAAAAGGFKV*QLVVGS Trigger: AGAGCCTACCACAAGTTGCAAAACCTTAAATCCCCC...AGCTGCTGCTGCCCTATTTAGGAGACAAACTGAAGATGAACCGGCTTGACCTGT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000048565.9 |
||
| CDS TCA 90 bp | TTTAAGGTTTTGCAACTTGTGGTAGGCTCTCAGGAGTGTGACATCTaGCCTTTCATGTATGGCCTCCACTTCCTTCAACAGATCTTTTGC | + |
|
Preference number: 5 (lower is better) Translates to: FKVLQLVVGSQECDI*PFMYGLHFLQQIFC Trigger: GCAAAAGATCTGTTGAAGGAAGTGGAGGCCATACATGAAAGGTCAGATGTCACACTCCTGAGAGCCTACCACAAGTTGCAAAACCTTAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048565.9 |
||
| CDS CCA 90 bp | TGTATGGCCTCCACTTCCTTCAACAGATCTTTTGCTGTGGAAACATaGTCTAACAGGGTCTCAAGATATCCATTCAGTTCTGAGAAACTC | + |
|
Preference number: 5 (lower is better) Translates to: CMASTSFNRSFAVET*SNRVSRYPFSSEKL Trigger: GAGTTTCTCAGAACTGAATGGATATCTTGAGACCCTGTTAGACCATGTTTCCACAGCAAAAGATCTGTTGAAGGAAGTGGAGGCCATACA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048565.9 |
||
| CDS-3UTR CAA 90 bp | TGCTTATATGATATGTGTGTGTTCTTGTGCGTGAGGATGGACATGACAAGCTATACGTATCTCTATTTTTaGATATTGAGCCTCCTCCCT | + |
|
Preference number: 5 (lower is better) Translates to: CLYDMCVFLCVRMDMTSYTYLYF*ILSLLP Trigger: AGGGAGGAGGCTCAATATCAAAAAATAGAGATACGT...ATAGCTTGTCATGTCCATCCTCACGCACAAGAACACACACATATCATATAAGCA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000048565.9 |
||
| CDS GCA 72 bp | CATACCGCCCAATTGCCCAGAAACCTGAGGACTGATTaGTCCAGTCCCCAGAAAAGTGGGCTTGACACACAC | + |
|
Preference number: 6 (lower is better) Translates to: HTAQLPRNLRTD*SSPQKSGLDTH Trigger: GTGTGTGTCAAGCCCACTTTTCTGGGGACTGGAGCAATCAGTCCTCAGGTTTCTGGGCAATTGGGCGGTATG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048565.9 |
||
| CDS CCA 72 bp | GTTACGGAACTGGTAGTTCCTGCTGAAGCTTTTCGGTaGAAAGGGGGTTTGACAGACGGGACAGAAGATGTT | + |
|
Preference number: 6 (lower is better) Translates to: VTELVVPAEAFR*KGGLTDGTEDV Trigger: AACATCTTCTGTCCCGTCTGTCAAACCCCCTTTCCACCGAAAAGCTTCAGCAGGAACTACCAGTTCCGTAAC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000048565.9 |
||
| CDS GCA 72 bp | AAACTCCGCAGCTCCTCCATGTGGCTCTCATTTAGATaGGCTTCGTACTCACTTTGTAGGAACAGTTTGATT | + |
|
Preference number: 6 (lower is better) Translates to: KLRSSSMWLSFR*ASYSLCRNSLI Trigger: AATCAAACTGTTCCTACAAAGTGAGTACGAAGCGCATCTAAATGAGAGCCACATGGAGGAGCTGCGGAGTTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048565.9 |
||
| CDS CCA 72 bp | CTTCAACTTGTTTCACTCCGAACTTTAACGTTGCAATaGCGCTCTCTAGGACTTTCCTGTGATAAGAGCTGG | + |
|
Preference number: 6 (lower is better) Translates to: LQLVSLRTLTLQ*RSLGLSCDKSW Trigger: CCAGCTCTTATCACAGGAAAGTCCTAGAGAGCGCCATTGCAACGTTAAAGTTCGGAGTGAAACAAGTTGAAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048565.9 |
||
| CDS CAA 72 bp | GCTTTTCTTCAACTTGTTTCACTCCGAACTTTAACGTaGCAATGGCGCTCTCTAGGACTTTCCTGTGATAAG | + |
|
Preference number: 6 (lower is better) Translates to: AFLQLVSLRTLT*QWRSLGLSCDK Trigger: CTTATCACAGGAAAGTCCTAGAGAGCGCCATTGCAACGTTAAAGTTCGGAGTGAAACAAGTTGAAGAAAAGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048565.9 |
||
| CDS CCA 72 bp | TCCACTTCCTTCAACAGATCTTTTGCTGTGGAAACATaGTCTAACAGGGTCTCAAGATATCCATTCAGTTCT | + |
|
Preference number: 6 (lower is better) Translates to: STSFNRSFAVET*SNRVSRYPFSS Trigger: AGAACTGAATGGATATCTTGAGACCCTGTTAGACCATGTTTCCACAGCAAAAGATCTGTTGAAGGAAGTGGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048565.9 |
||
| CDS CAA 72 bp | TTTGATTTGCCCAATTTCATAACGTATCTCTATTTTTaGATATTGAGCCTCCTCCCTCAGTCCAAGAACCCT | + |
|
Preference number: 6 (lower is better) Translates to: FDLPNFITYLYF*ILSLLPQSKNP Trigger: AGGGTTCTTGGACTGAGGGAGGAGGCTCAATATCAAAAAATAGAGATACGTTATGAAATTGGGCAAATCAAA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000048565.9 |
||