RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for TRIM59 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000034317

Ensembl transcript IDs: ENSMUST00000107802.8, ENSMUST00000136512.3

Found 35 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR-3UTR CCA 90 bp TTTGTGGTGCTAGAGCCAGCAGTCCAGACACTTTCTGATGGGTTTTTGAGACCTTCTCCATCTGTGCATTaGAAAGCTTCAAATCATCAA +
Preference number: 2 (lower is better)
Translates to: FVVLEPAVQTLSDGFLRPSPSVH*KASNHQ
Trigger: TTGATGATTTGAAGCTTTCCAATGCACAGATGGAGA...AGGTCTCAAAAACCCATCAGAAAGTGTCTGGACTGCTGGCTCTAGCACCACAAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000107802.8
3UTR-3UTR GCA 90 bp TTTGTGGTGCTAGAGCCAGCAGTCCAGACACTTTCTGATGGGTTTTTGAGACCTACATATACAAAGAACTaGCAAGTTAGCCACTATAAC +
Preference number: 2 (lower is better)
Translates to: FVVLEPAVQTLSDGFLRPTYTKN*QVSHYN
Trigger: GTTATAGTGGCTAACTTGGCAGTTCTTTGTATATGT...AGGTCTCAAAAACCCATCAGAAAGTGTCTGGACTGCTGGCTCTAGCACCACAAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000107802.8
3UTR-3UTR GCA 90 bp AATCCTCTCCATCTGTGCATTGGAAAGCTTCAAATCATCAAAATAGGCTTGTGGTTGATGTGCTGTTTATaGCACCCTGACTTTCCATCT +
Preference number: 2 (lower is better)
Translates to: NPLHLCIGKLQIIKIGLWLMCCL*HPDFPS
Trigger: AGATGGAAAGTCAGGGTGGCATAAACAGCACATCAA...CCACAAGCCTATTTTGATGATTTGAAGCTTTCCAATGCACAGATGGAGAGGATT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107802.8
3UTR-3UTR CCA 90 bp TCAATGGCTGTGAACCAAAAGTTCTACCACATGCATCATGGTAGTCCATGTCAAATCAAAATAGGCTTGTaGACCTCAAGGATCTTGTCA +
Preference number: 2 (lower is better)
Translates to: SMAVNQKFYHMHHGSPCQIKIGL*TSRILS
Trigger: TGACAAGATCCTTGAGGTCCACAAGCCTATTTTGAT...TTGACATGGACTACCATGATGCATGTGGTAGAACTTTTGGTTCACAGCCATTGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000107802.8
3UTR-3UTR CAA 90 bp TCAATGGCTGTGAACCAAAAGTTCTACCACATGCATCATGGTAGTCCATGTCAAATCATCAAAATAGGCTaGTGGACCTCAAGGATCTTG +
Preference number: 3 (lower is better)
Translates to: SMAVNQKFYHMHHGSPCQIIKIG*WTSRIL
Trigger: CAAGATCCTTGAGGTCCACAAGCCTATTTTGATGAT...TTGACATGGACTACCATGATGCATGTGGTAGAACTTTTGGTTCACAGCCATTGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000107802.8
3UTR-3UTR CAA 90 bp TGGACTTTAGTGATAAAACTTGTCAGCATTGTTCTGACCTTAAGAAACACAGCTCTCTCCATCTGTGCATaGGAAAGCTTCAAATCATCA +
Preference number: 3 (lower is better)
Translates to: WTLVIKLVSIVLTLRNTALSICA*ESFKSS
Trigger: TGATGATTTGAAGCTTTCCAATGCACAGATGGAGAG...AGCTGTGTTTCTTAAGGTCAGAACAATGCTGACAAGTTTTATCACTAAAGTCCA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107802.8
3UTR CCA 72 bp TTTAAAACAACTTATAAATCCTCTCCATCTGTGCATTaGAAAGCTTCAAATCATCAAAATAGGCTTGTGGAC +
Preference number: 3 (lower is better)
Translates to: FKTTYKSSPSVH*KASNHQNRLVD
Trigger: GTCCACAAGCCTATTTTGATGATTTGAAGCTTTCCAATGCACAGATGGAGAGGATTTATAAGTTGTTTTAAA
35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000107802.8
CDS-3UTR TCA 90 bp TTTGTGGTGCTAGAGCCAGCAGTCCAGACACTTTCTGATGGGTTTTTGAGACCTAGTGTTCAGGGCAGGTaGCAACATCTGGGTGGTCTT +
Preference number: 4 (lower is better)
Translates to: FVVLEPAVQTLSDGFLRPSVQGR*QHLGGL
Trigger: AAGACCACCCAGATGTTGTCACCTGCCCTGAACACT...AGGTCTCAAAAACCCATCAGAAAGTGTCTGGACTGCTGGCTCTAGCACCACAAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000107802.8
CDS-3UTR CCA 90 bp AATCCTCTCCATCTGTGCATTGGAAAGCTTCAAATCATCAAAATAGGCTTGTGGGCAGGTGACAACATCTaGGTGGTCTTCTTGCTGGTA +
Preference number: 4 (lower is better)
Translates to: NPLHLCIGKLQIIKIGLWAGDNI*VVFLLV
Trigger: TACCAGCAAGAAGACCACCCAGATGTTGTCACCTGC...CCACAAGCCTATTTTGATGATTTGAAGCTTTCCAATGCACAGATGGAGAGGATT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107802.8
CDS-3UTR CCA 90 bp TCAATGGCTGTGAACCAAAAGTTCTACCACATGCATCATGGTAGTCCATGTCAACTGGACCTCAGGAAGTaGTCTCTGTTTCAACATCTG +
Preference number: 4 (lower is better)
Translates to: SMAVNQKFYHMHHGSPCQLDLRK*SLFQHL
Trigger: CAGATGTTGAAACAGAGACCACTTCCTGAGGTCCAG...TTGACATGGACTACCATGATGCATGTGGTAGAACTTTTGGTTCACAGCCATTGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107802.8
CDS-3UTR TCA 90 bp TTTGTGGTGCTAGAGCCAGCAGTCCAGACACTTTCTGATGGGTTTTTGAGACCTTGTTTCAACAACTTCTaGGGTGTATCCTTTTCTTTC +
Preference number: 4 (lower is better)
Translates to: FVVLEPAVQTLSDGFLRPCFNNF*GVSFSF
Trigger: GAAAGAAAAGGATACACCTCAGAAGTTGTTGAAACA...AGGTCTCAAAAACCCATCAGAAAGTGTCTGGACTGCTGGCTCTAGCACCACAAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000107802.8
CDS-3UTR GCA 90 bp TTTGTGGTGCTAGAGCCAGCAGTCCAGACACTTTCTGATGGGTTTTTGAGACCTTCTGGGTGGTCTTCTTaGTGGTACTTTTCAATAATT +
Preference number: 4 (lower is better)
Translates to: FVVLEPAVQTLSDGFLRPSGWSS*WYFSII
Trigger: AATTATTGAAAAGTACCAGCAAGAAGACCACCCAGA...AGGTCTCAAAAACCCATCAGAAAGTGTCTGGACTGCTGGCTCTAGCACCACAAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000107802.8
CDS-3UTR CCA 90 bp TCCTCTCCATCTGTGCATTGGAAAGCTTCAAATCATCAAAATAGGCTTGTGGACAGATGCTGTAACAGATaGGACACGTTAACTCCTCCT +
Preference number: 4 (lower is better)
Translates to: SSPSVHWKASNHQNRLVDRCCNR*DTLTPP
Trigger: AGGAGGAGTTAACGTGTCCCATCTGTTACAGCATCT...GTCCACAAGCCTATTTTGATGATTTGAAGCTTTCCAATGCACAGATGGAGAGGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107802.8
CDS-3UTR CCA 90 bp TTTGTGGTGCTAGAGCCAGCAGTCCAGACACTTTCTGATGGGTTTTTGAGACCTAGCTCCTTAAAATACTaGAGAACAACTTCCTTATCA +
Preference number: 4 (lower is better)
Translates to: FVVLEPAVQTLSDGFLRPSSLKY*RTTSLS
Trigger: TGATAAGGAAGTTGTTCTCCAGTATTTTAAGGAGCT...AGGTCTCAAAAACCCATCAGAAAGTGTCTGGACTGCTGGCTCTAGCACCACAAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000107802.8
3UTR CAA 72 bp CCCTCACCTTCATTGCATCTTCAAAATGACCTCATTTaGTTACCATGCCTAGATTTTGCGTCTGATAAGTGG +
Preference number: 4 (lower is better)
Translates to: PSPSLHLQNDLI*LPCLDFASDKW
Trigger: CCACTTATCAGACGCAAAATCTAGGCATGGTAACAAAATGAGGTCATTTTGAAGATGCAATGAAGGTGAGGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000107802.8
CDS-3UTR TCA 90 bp AATCCTCTCCATCTGTGCATTGGAAAGCTTCAAATCATCAAAATAGGCTTGTGGTCTATAGGATGGCCATaGTGTTGGCCTATAGTAAGA +
Preference number: 4 (lower is better)
Translates to: NPLHLCIGKLQIIKIGLWSIGWP*CWPIVR
Trigger: TCTTACTATAGGCCAACATCATGGCCATCCTATAGA...CCACAAGCCTATTTTGATGATTTGAAGCTTTCCAATGCACAGATGGAGAGGATT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107802.8
CDS-3UTR TCA 90 bp TCCTCTCCATCTGTGCATTGGAAAGCTTCAAATCATCAAAATAGGCTTGTGGACACATGGCGTTCTTTTTaGAGAAACTCTCATTTCAGG +
Preference number: 4 (lower is better)
Translates to: SSPSVHWKASNHQNRLVDTWRSF*RNSHFR
Trigger: CCTGAAATGAGAGTTTCTTCAAAAAGAACGCCATGT...GTCCACAAGCCTATTTTGATGATTTGAAGCTTTCCAATGCACAGATGGAGAGGA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000107802.8
CDS-3UTR CCA 90 bp TGGACTTTAGTGATAAAACTTGTCAGCATTGTTCTGACCTTAAGAAACACAGCTGTGACAACATCTGGGTaGTCTTCTTGCTGGTACTTT +
Preference number: 4 (lower is better)
Translates to: WTLVIKLVSIVLTLRNTAVTTSG*SSCWYF
Trigger: AAAGTACCAGCAAGAAGACCACCCAGATGTTGTCAC...AGCTGTGTTTCTTAAGGTCAGAACAATGCTGACAAGTTTTATCACTAAAGTCCA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107802.8
CDS-3UTR GCA 90 bp TCAATGGCTGTGAACCAAAAGTTCTACCACATGCATCATGGTAGTCCATGTCAAGTAAAAGTTACCAGATaGCTGAAGAACATTTTCCAA +
Preference number: 4 (lower is better)
Translates to: SMAVNQKFYHMHHGSPCQVKVTR*LKNIFQ
Trigger: TTGGAAAATGTTCTTCAGGCATCTGGTAACTTTTAC...TTGACATGGACTACCATGATGCATGTGGTAGAACTTTTGGTTCACAGCCATTGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000107802.8
CDS-3UTR TCA 90 bp TGGACTTTAGTGATAAAACTTGTCAGCATTGTTCTGACCTTAAGAAACACAGCTTTTCTACAAAATGTATaGGAGCATGGTAGTACACGG +
Preference number: 4 (lower is better)
Translates to: WTLVIKLVSIVLTLRNTAFLQNV*EHGSTR
Trigger: CCGTGTACTACCATGCTCTCATACATTTTGTAGAAA...AGCTGTGTTTCTTAAGGTCAGAACAATGCTGACAAGTTTTATCACTAAAGTCCA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000107802.8
CDS-3UTR TCA 90 bp TGGACTTTAGTGATAAAACTTGTCAGCATTGTTCTGACCTTAAGAAACACAGCTATCTCCTTCATTCCTTaGATCTGTGGAGTGTATTCT +
Preference number: 4 (lower is better)
Translates to: WTLVIKLVSIVLTLRNTAISFIP*ICGVYS
Trigger: AGAATACACTCCACAGATTCAAGGAATGAAGGAGAT...AGCTGTGTTTCTTAAGGTCAGAACAATGCTGACAAGTTTTATCACTAAAGTCCA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107802.8
CDS-3UTR CAA 90 bp TTTGTGGTGCTAGAGCCAGCAGTCCAGACACTTTCTGATGGGTTTTTGAGACCTCTGCAGTTAGGACACTaGAGTGGAATTCGCAGAGGC +
Preference number: 5 (lower is better)
Translates to: FVVLEPAVQTLSDGFLRPLQLGH*SGIRRG
Trigger: GCCTCTGCGAATTCCACTCAAGTGTCCTAACTGCAG...AGGTCTCAAAAACCCATCAGAAAGTGTCTGGACTGCTGGCTCTAGCACCACAAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000107802.8
CDS-3UTR CAA 90 bp TCAATGGCTGTGAACCAAAAGTTCTACCACATGCATCATGGTAGTCCATGTCAAAGGATGGCCATGATGTaGGCCTATAGTAAGACAATG +
Preference number: 5 (lower is better)
Translates to: SMAVNQKFYHMHHGSPCQRMAMM*AYSKTM
Trigger: CATTGTCTTACTATAGGCCAACATCATGGCCATCCT...TTGACATGGACTACCATGATGCATGTGGTAGAACTTTTGGTTCACAGCCATTGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107802.8
CDS-3UTR CAA 90 bp TCCTCTCCATCTGTGCATTGGAAAGCTTCAAATCATCAAAATAGGCTTGTGGACTATCTCCTTCATTCCTaGAATCTGTGGAGTGTATTC +
Preference number: 5 (lower is better)
Translates to: SSPSVHWKASNHQNRLVDYLLHS*NLWSVF
Trigger: GAATACACTCCACAGATTCAAGGAATGAAGGAGATA...GTCCACAAGCCTATTTTGATGATTTGAAGCTTTCCAATGCACAGATGGAGAGGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107802.8
CDS-3UTR CAA 90 bp AATCCTCTCCATCTGTGCATTGGAAAGCTTCAAATCATCAAAATAGGCTTGTGGTTTCAGATAGGCACTTaGAAGGTCATCTATAGGATG +
Preference number: 5 (lower is better)
Translates to: NPLHLCIGKLQIIKIGLWFQIGT*KVIYRM
Trigger: CATCCTATAGATGACCTTCAAAGTGCCTATCTGAAA...CCACAAGCCTATTTTGATGATTTGAAGCTTTCCAATGCACAGATGGAGAGGATT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107802.8
CDS-3UTR CAA 90 bp TCAATGGCTGTGAACCAAAAGTTCTACCACATGCATCATGGTAGTCCATGTCAACTGTGGAGTGTATTCTaGATTAATCATTTTGCCAAC +
Preference number: 5 (lower is better)
Translates to: SMAVNQKFYHMHHGSPCQLWSVF*INHFAN
Trigger: GTTGGCAAAATGATTAATCAAGAATACACTCCACAG...TTGACATGGACTACCATGATGCATGTGGTAGAACTTTTGGTTCACAGCCATTGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000107802.8
CDS-3UTR CAA 90 bp TCAATGGCTGTGAACCAAAAGTTCTACCACATGCATCATGGTAGTCCATGTCAAAACATGGCGTTCTTTTaGAAGAAACTCTCATTTCAG +
Preference number: 5 (lower is better)
Translates to: SMAVNQKFYHMHHGSPCQNMAFF*KKLSFQ
Trigger: CTGAAATGAGAGTTTCTTCAAAAAGAACGCCATGTT...TTGACATGGACTACCATGATGCATGTGGTAGAACTTTTGGTTCACAGCCATTGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000107802.8
CDS TCA 90 bp CATTTCTTTTTCATCATTATCAGACCAGGAACATGGCGTTCTTTTTaGAGAAACTCTCATTTCAGGAATAACAGCTTTCTTAATACGTCC +
Preference number: 5 (lower is better)
Translates to: HFFFIIIRPGTWRSF*RNSHFRNNSFLNTS
Trigger: GGACGTATTAAGAAAGCTGTTATTCCTGAAATGAGAGTTTCTTCAAAAAGAACGCCATGTTCCTGGTCTGATAATGATGAAAAAGAAATG
36% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000107802.8
ENSMUST00000136512.3
CDS CCA 72 bp TGGTTGCCTGTAGTGTTCAGGGCAGGTGACAACATCTaGGTGGTCTTCTTGCTGGTACTTTTCAATAATTGC +
Preference number: 6 (lower is better)
Translates to: WLPVVFRAGDNI*VVFLLVLFNNC
Trigger: GCAATTATTGAAAAGTACCAGCAAGAAGACCACCCAGATGTTGTCACCTGCCCTGAACACTACAGGCAACCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107802.8
ENSMUST00000136512.3
CDS TCA 72 bp AAACATTTAATGGTTGCCTGTAGTGTTCAGGGCAGGTaGCAACATCTGGGTGGTCTTCTTGCTGGTACTTTT +
Preference number: 6 (lower is better)
Translates to: KHLMVACSVQGR*QHLGGLLAGTF
Trigger: AAAAGTACCAGCAAGAAGACCACCCAGATGTTGTCACCTGCCCTGAACACTACAGGCAACCATTAAATGTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107802.8
ENSMUST00000136512.3
CDS GCA 72 bp TGTTCAGGGCAGGTGACAACATCTGGGTGGTCTTCTTaGTGGTACTTTTCAATAATTGCTCGTAATGCAAAG +
Preference number: 6 (lower is better)
Translates to: CSGQVTTSGWSS*WYFSIIARNAK
Trigger: CTTTGCATTACGAGCAATTATTGAAAAGTACCAGCAAGAAGACCACCCAGATGTTGTCACCTGCCCTGAACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107802.8
ENSMUST00000136512.3
CDS CAA 72 bp CTTCTGAGGTGTATCCTTTTCTTTCAGATAGGCACTTaGAAGGTCATCTATAGGATGGCCATGATGTTGGCC +
Preference number: 6 (lower is better)
Translates to: LLRCILFFQIGT*KVIYRMAMMLA
Trigger: GGCCAACATCATGGCCATCCTATAGATGACCTTCAAAGTGCCTATCTGAAAGAAAAGGATACACCTCAGAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107802.8
ENSMUST00000136512.3
CDS CAA 90 bp TTTCAACAACTTCTGAGGTGTATCCTTTTCTTTCAGATAGGCACTTaGAAGGTCATCTATAGGATGGCCATGATGTTGGCCTATAGTAAG +
Preference number: 6 (lower is better)
Translates to: FQQLLRCILFFQIGT*KVIYRMAMMLAYSK
Trigger: CTTACTATAGGCCAACATCATGGCCATCCTATAGATGACCTTCAAAGTGCCTATCTGAAAGAAAAGGATACACCTCAGAAGTTGTTGAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107802.8
ENSMUST00000136512.3
CDS CCA 72 bp AATTTCAATAATACTTCTGCAGTTAGGACACTTGAGTaGAATTCGCAGAGGCCTCCATATGTAAAAGTTACC +
Preference number: 6 (lower is better)
Translates to: NFNNTSAVRTLE*NSQRPPYVKVT
Trigger: GGTAACTTTTACATATGGAGGCCTCTGCGAATTCCACTCAAGTGTCCTAACTGCAGAAGTATTATTGAAATT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107802.8
ENSMUST00000136512.3
CDS CAA 72 bp TATCTCCTTCATTCCTTGAATCTGTGGAGTGTATTCTaGATTAATCATTTTGCCAACATCACAAAGAGCTGC +
Preference number: 6 (lower is better)
Translates to: YLLHSLNLWSVF*INHFANITKSC
Trigger: GCAGCTCTTTGTGATGTTGGCAAAATGATTAATCAAGAATACACTCCACAGATTCAAGGAATGAAGGAGATA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107802.8
ENSMUST00000136512.3