RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for TRIM56 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000043279

Ensembl transcript IDs: ENSMUST00000054384.6, ENSMUST00000152207.2

Found 346 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp CTAGGCAGGGGCTCTACCACTGAGCCACGCCCCCACCCTCATTGGTaGATTCTAGACAAGCCCTCTACAGTGAGCCATGCCCAGACTCCT +
Preference number: 1 (lower is better)
Translates to: LGRGSTTEPRPHPHW*ILDKPSTVSHAQTP
Trigger: AGGAGTCTGGGCATGGCTCACTGTAGAGGGCTTGTCTAGAATGCACCAATGAGGGTGGGGGCGTGGCTCAGTGGTAGAGCCCCTGCCTAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR GCA 90 bp TGGCGTGTAGTCCATGCACTTGGTGAAACACTCAAGGACGGTCACTaGCGAGGCAACCCTGCCCTCTGGACAGGACCCACGAGTGTGGAT +
Preference number: 1 (lower is better)
Translates to: WRVVHALGETLKDGH*RGNPALWTGPTSVD
Trigger: ATCCACACTCGTGGGTCCTGTCCAGAGGGCAGGGTTGCCTCGGCAGTGACCGTCCTTGAGTGTTTCACCAAGTGCATGGACTACACGCCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR CCA 90 bp GTCACTGCCGAGGCAACCCTGCCCTCTGGACAGGACCCACGAGTGTaGATGCTGACACCTTTCAACCACCATCTGGAAGAGTTCGACTCC +
Preference number: 1 (lower is better)
Translates to: VTAEATLPSGQDPRV*MLTPFNHHLEEFDS
Trigger: GGAGTCGAACTCTTCCAGATGGTGGTTGAAAGGTGTCAGCATCCACACTCGTGGGTCCTGTCCAGAGGGCAGGGTTGCCTCGGCAGTGAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR TCA 90 bp GAGTTTTATGCCTCCTCCCGCCTTAGGTCCCCCATCCATCACTGCTaGCTTCCCAGATTCTCCCATGCTGGCCTTTGGGCTTCAGCGCCT +
Preference number: 1 (lower is better)
Translates to: EFYASSRLRSPIHHC*LPRFSHAGLWASAP
Trigger: AGGCGCTGAAGCCCAAAGGCCAGCATGGGAGAATCTGGGAAGTCAGCAGTGATGGATGGGGGACCTAAGGCGGGAGGAGGCATAAAACTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR GCA 90 bp CTCTTCAATTCCCACTTAGAGGACTGCTTCCACCTTCAACTTCCCTaGCAAAGAGAGATGGCCAGGCACCTTGGCCCCTGCCACCCGTCA +
Preference number: 1 (lower is better)
Translates to: LFNSHLEDCFHLQLP*QREMARHLGPCHPS
Trigger: TGACGGGTGGCAGGGGCCAAGGTGCCTGGCCATCTCTCTTTGGCAGGGAAGTTGAAGGTGGAAGCAGTCCTCTAAGTGGGAATTGAAGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR CCA 90 bp CTTCCACCTTCAACTTCCCTGCCAAAGAGAGATGGCCAGGCACCTTaGCCCCTGCCACCCGTCAATCAAATTCCATCTAGCTCAGCTCGC +
Preference number: 1 (lower is better)
Translates to: LPPSTSLPKRDGQAP*PLPPVNQIPSSSAR
Trigger: GCGAGCTGAGCTAGATGGAATTTGATTGACGGGTGGCAGGGGCCAAGGTGCCTGGCCATCTCTCTTTGGCAGGGAAGTTGAAGGTGGAAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR GCA 90 bp CACATTACGCAATCAGAATCTGCCCGGTCAGTCTTTCCTTGTGCGTaGATGCATGAGTGCACGTGTGCGCACCTGCACAAGGTCCACAGG +
Preference number: 1 (lower is better)
Translates to: HITQSESARSVFPCA*MHECTCAHLHKVHR
Trigger: CCTGTGGACCTTGTGCAGGTGCGCACACGTGCACTCATGCATGCACGCACAAGGAAAGACTGACCGGGCAGATTCTGATTGCGTAATGTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR GCA 90 bp AGTCACGCCCAAACAGTGCCATCGAGATCTCCAGCCTTCGTAGCCTaGAAGGATGTCAGGGAGTCCTTCAGACCCACTCTTATCATCAGC +
Preference number: 1 (lower is better)
Translates to: SHAQTVPSRSPAFVA*KDVRESFRPTLIIS
Trigger: GCTGATGATAAGAGTGGGTCTGAAGGACTCCCTGACATCCTTGCAGGCTACGAAGGCTGGAGATCTCGATGGCACTGTTTGGGCGTGACT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR GCA 90 bp CACGTGTGCGCACCTGCACAAGGTCCACAGGACACCAAGGGTCCATaGTGTTACTCTCCTATTACTTGGAGTCAGGGTCTCTCGATGAAC +
Preference number: 1 (lower is better)
Translates to: HVCAPAQGPQDTKGP*CYSPITWSQGLSMN
Trigger: GTTCATCGAGAGACCCTGACTCCAAGTAATAGGAGAGTAACAGCATGGACCCTTGGTGTCCTGTGGACCTTGTGCAGGTGCGCACACGTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR TCA 90 bp TACCTCCACTTCTGCTTGTGCCTGCACTCTCTGACCCCTGACCTCTaGCCCCATACTTCATTGAGGGAGTTTCTACTCCGATGGATTGGC +
Preference number: 1 (lower is better)
Translates to: YLHFCLCLHSLTPDL*PHTSLREFLLRWIG
Trigger: GCCAATCCATCGGAGTAGAAACTCCCTCAATGAAGTATGGGGTCAGAGGTCAGGGGTCAGAGAGTGCAGGCACAAGCAGAAGTGGAGGTA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR TCA 90 bp TCCTGCAGGCCCAGGAAGTCAGCAGGATATTCCTTTGCCATACGCTaGCATACCCTGTTCACCAACACTTCTGACCCTGTCTCCTGCAGA +
Preference number: 1 (lower is better)
Translates to: SCRPRKSAGYSFAIR*HTLFTNTSDPVSCR
Trigger: TCTGCAGGAGACAGGGTCAGAAGTGTTGGTGAACAGGGTATGTCAGCGTATGGCAAAGGAATATCCTGCTGACTTCCTGGGCCTGCAGGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR TCA 90 bp AGAACTATAAGGCTTCACAGCATAGGCACTTGGTCCCATGACAACTaGGAAGTGGGCAGGGCTGACCCTCAGGATCTCTCCTCAACCCAC +
Preference number: 1 (lower is better)
Translates to: RTIRLHSIGTWSHDN*EVGRADPQDLSSTH
Trigger: GTGGGTTGAGGAGAGATCCTGAGGGTCAGCCCTGCCCACTTCTCAGTTGTCATGGGACCAAGTGCCTATGCTGTGAAGCCTTATAGTTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR GCA 90 bp CTTCTCAGGTCTGCACCTCCTCTCTTCAATTCCCACTTAGAGGACTaGTTCCACCTTCAACTTCCCTGCCAAAGAGAGATGGCCAGGCAC +
Preference number: 1 (lower is better)
Translates to: LLRSAPPLFNSHLED*FHLQLPCQREMARH
Trigger: GTGCCTGGCCATCTCTCTTTGGCAGGGAAGTTGAAGGTGGAAGCAGTCCTCTAAGTGGGAATTGAAGAGAGGAGGTGCAGACCTGAGAAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR TCA 90 bp GATCTCATACCTCCACTTCTGCTTGTGCCTGCACTCTCTGACCCCTaGCCTCTGACCCCATACTTCATTGAGGGAGTTTCTACTCCGATG +
Preference number: 1 (lower is better)
Translates to: DLIPPLLLVPALSDP*PLTPYFIEGVSTPM
Trigger: CATCGGAGTAGAAACTCCCTCAATGAAGTATGGGGTCAGAGGTCAGGGGTCAGAGAGTGCAGGCACAAGCAGAAGTGGAGGTATGAGATC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR TCA 90 bp GTCCATGCTGTTACTCTCCTATTACTTGGAGTCAGGGTCTCTCGATaGACCTGTAAGCCTGGCAGTAAACAGATCTCAGACTCTGCCCCC +
Preference number: 1 (lower is better)
Translates to: VHAVTLLLLGVRVSR*TCKPGSKQISDSAP
Trigger: GGGGGCAGAGTCTGAGATCTGTTTACTGCCAGGCTTACAGGTTCATCGAGAGACCCTGACTCCAAGTAATAGGAGAGTAACAGCATGGAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR CCA 90 bp ACAGCAGCAGCCTTAGCTGCAGGAATTGTTCCAAAGCAAGCAGTTTaGTTGACTGCTGGCATCTGCTGTGTGCTCAAAGCTATTGCCAGC +
Preference number: 1 (lower is better)
Translates to: TAAALAAGIVPKQAV*LTAGICCVLKAIAS
Trigger: GCTGGCAATAGCTTTGAGCACACAGCAGATGCCAGCAGTCAACCAAACTGCTTGCTTTGGAACAATTCCTGCAGCTAAGGCTGCTGCTGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR TCA 90 bp CACGTGGATCTTATCATCATGGCTTCTGAGGGCTTCGATGCCTTCTaGAAACTCGAGAGATGTCTGGTTTGTGGGTACCGAAGGGAGGAT +
Preference number: 1 (lower is better)
Translates to: HVDLIIMASEGFDAF*KLERCLVCGYRRED
Trigger: ATCCTCCCTTCGGTACCCACAAACCAGACATCTCTCGAGTTTTCAGAAGGCATCGAAGCCCTCAGAAGCCATGATGATAAGATCCACGTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR GCA 90 bp CTCTCTGCTTTTGAAGTCTATCTTGAGAGGCACAATAGTGCCCCCTaGTGGAGACTTCCCACAAGTCAAGATTTCTGCAGTTTGGCTGGC +
Preference number: 1 (lower is better)
Translates to: LSAFEVYLERHNSAP*WRLPTSQDFCSLAG
Trigger: GCCAGCCAAACTGCAGAAATCTTGACTTGTGGGAAGTCTCCAGCAGGGGGCACTATTGTGCCTCTCAAGATAGACTTCAAAAGCAGAGAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR GCA 90 bp ACGTGCACTCCCAATACAGGTTCCCGAGAACCTCTGCATCTTTGCTaGTACACAAAATACCGGCAAGAAGCCCCTACAGTCTTGTCTCTT +
Preference number: 1 (lower is better)
Translates to: TCTPNTGSREPLHLC*YTKYRQEAPTVLSL
Trigger: AAGAGACAAGACTGTAGGGGCTTCTTGCCGGTATTTTGTGTAGCAGCAAAGATGCAGAGGTTCTCGGGAACCTGTATTGGGAGTGCACGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR CCA 90 bp TCTGGCTGGCAAGCCTTAATCAGCACCACGTGGATCTTATCATCATaGCTTCTGAGGGCTTCGATGCCTTCTGAAAACTCGAGAGATGTC +
Preference number: 1 (lower is better)
Translates to: SGWQALISTTWILSS*LLRASMPSENSRDV
Trigger: GACATCTCTCGAGTTTTCAGAAGGCATCGAAGCCCTCAGAAGCCATGATGATAAGATCCACGTGGTGCTGATTAAGGCTTGCCAGCCAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR CCA 90 bp GCAAGGGTCCCCAAGAAGCGCTTGGTTCTCTGTCTCTTTAGCATTTaGGGGATTCGCTTTCAGAATCAGGAGATTCCTCCCTCTTTCTGT +
Preference number: 1 (lower is better)
Translates to: ARVPKKRLVLCLFSI*GIRFQNQEIPPSFC
Trigger: ACAGAAAGAGGGAGGAATCTCCTGATTCTGAAAGCGAATCCCCCAAATGCTAAAGAGACAGAGAACCAAGCGCTTCTTGGGGACCCTTGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR TCA 90 bp ATATTCCTTTGCCATACGCTGACATACCCTGTTCACCAACACTTCTaGCCCTGTCTCCTGCAGACACTGGACATCTTCTTTGTGAGGGGA +
Preference number: 1 (lower is better)
Translates to: IFLCHTLTYPVHQHF*PCLLQTLDIFFVRG
Trigger: TCCCCTCACAAAGAAGATGTCCAGTGTCTGCAGGAGACAGGGTCAGAAGTGTTGGTGAACAGGGTATGTCAGCGTATGGCAAAGGAATAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR CCA 90 bp AACAACTATAAGCATCCCTCCCCCATCATCTGCTGTGTCTCTGGCTaGCAAGCCTTAATCAGCACCACGTGGATCTTATCATCATGGCTT +
Preference number: 1 (lower is better)
Translates to: NNYKHPSPIICCVSG*QALISTTWILSSWL
Trigger: AAGCCATGATGATAAGATCCACGTGGTGCTGATTAAGGCTTGCCAGCCAGAGACACAGCAGATGATGGGGGAGGGATGCTTATAGTTGTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR CCA 90 bp AGTTTAGCATCTCCCTTCATCTTGCAAGGGTCCCCAAGAAGCGCTTaGTTCTCTGTCTCTTTAGCATTTGGGGGATTCGCTTTCAGAATC +
Preference number: 1 (lower is better)
Translates to: SLASPFILQGSPRSA*FSVSLAFGGFAFRI
Trigger: GATTCTGAAAGCGAATCCCCCAAATGCTAAAGAGACAGAGAACCAAGCGCTTCTTGGGGACCCTTGCAAGATGAAGGGAGATGCTAAACT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR TCA 90 bp CAGCCTACACTACCATGCCTGGCTTCATTTCTGAAGATCTCTCACTaGAATACCACACACACACACACACACACACACACAAACACACAC +
Preference number: 1 (lower is better)
Translates to: QPTLPCLASFLKISH*NTTHTHTHTHTNTH
Trigger: GTGTGTGTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGGTATTTCAGTGAGAGATCTTCAGAAATGAAGCCAGGCATGGTAGTGTAGGCTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR GCA 90 bp TGTCTTCCCAAAGTTCCACCTTCTTCTGGTCTTCTTCCCTGTATATaGCCACCCTCTTCTACTTGGTCACCAAGATACTTCGCCCAATAT +
Preference number: 1 (lower is better)
Translates to: CLPKVPPSSGLLPCI*PPSSTWSPRYFAQY
Trigger: ATATTGGGCGAAGTATCTTGGTGACCAAGTAGAAGAGGGTGGGCATATACAGGGAAGAAGACCAGAAGAAGGTGGAACTTTGGGAAGACA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR CCA 90 bp CTTCCCACAAGTCAAGATTTCTGCAGTTTGGCTGGCTTAAGGTTGTaGCATACTGAGTGTCAGAGCCCTCTCTACACATTAAGTCACTTC +
Preference number: 1 (lower is better)
Translates to: LPTSQDFCSLAGLRL*HTECQSPLYTLSHF
Trigger: GAAGTGACTTAATGTGTAGAGAGGGCTCTGACACTCAGTATGCCACAACCTTAAGCCAGCCAAACTGCAGAAATCTTGACTTGTGGGAAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR CCA 90 bp CCTTCTTCTGGTCTTCTTCCCTGTATATGCCCACCCTCTTCTACTTaGTCACCAAGATACTTCGCCCAATATGTGAGGAGAGGAATATCT +
Preference number: 1 (lower is better)
Translates to: PSSGLLPCICPPSST*SPRYFAQYVRRGIS
Trigger: AGATATTCCTCTCCTCACATATTGGGCGAAGTATCTTGGTGACCAAGTAGAAGAGGGTGGGCATATACAGGGAAGAAGACCAGAAGAAGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR TCA 90 bp AAGTCAAGATTTCTGCAGTTTGGCTGGCTTAAGGTTGTGGCATACTaGGTGTCAGAGCCCTCTCTACACATTAAGTCACTTCACAGACGT +
Preference number: 1 (lower is better)
Translates to: KSRFLQFGWLKVVAY*VSEPSLHIKSLHRR
Trigger: ACGTCTGTGAAGTGACTTAATGTGTAGAGAGGGCTCTGACACTCAGTATGCCACAACCTTAAGCCAGCCAAACTGCAGAAATCTTGACTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR TCA 90 bp CAGCCCAAAATAACTCAAAAAGATGTAACCTCCGAAACAAATCATTaGCTATTTACAGATTGGGAATCCATTGTCTGCCTGGCAACTATT +
Preference number: 1 (lower is better)
Translates to: QPKITQKDVTSETNH*LFTDWESIVCLATI
Trigger: AATAGTTGCCAGGCAGACAATGGATTCCCAATCTGTAAATAGTCAATGATTTGTTTCGGAGGTTACATCTTTTTGAGTTATTTTGGGCTG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR-3UTR GCA 90 bp GCCAAAGAGAGATGGCCAGGCACCTTGGCCCCTGCCACCCGTCAATCAAATTCCGCGTGCATGCATGAGTaGACGTGTGCGCACCTGCAC +
Preference number: 2 (lower is better)
Translates to: AKERWPGTLAPATRQSNSACMHE*TCAHLH
Trigger: GTGCAGGTGCGCACACGTGCACTCATGCATGCACGC...GGAATTTGATTGACGGGTGGCAGGGGCCAAGGTGCCTGGCCATCTCTCTTTGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR-3UTR CCA 90 bp TCACTGGGGAAACCTAAGCAAGCCCTCTGTGCCCGACCAGCTCAAACCCTCTTTAGGTGGGGTGAGGAGTaGGGGCAGGTCAGTGGGCAG +
Preference number: 2 (lower is better)
Translates to: SLGKPKQALCARPAQTLFRWGEE*GQVSGQ
Trigger: CTGCCCACTGACCTGCCCCCACTCCTCACCCCACCT...AAAGAGGGTTTGAGCTGGTCGGGCACAGAGGGCTTGCTTAGGTTTCCCCAGTGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR-3UTR CCA 90 bp TCACTGGGGAAACCTAAGCAAGCCCTCTGTGCCCGACCAGCTCAAACCCTCTTTGGGCAGGTGCAGCGATaGTGGGAGGGAAGAGCCAGC +
Preference number: 2 (lower is better)
Translates to: SLGKPKQALCARPAQTLFGQVQR*WEGRAS
Trigger: GCTGGCTCTTCCCTCCCACCATCGCTGCACCTGCCC...AAAGAGGGTTTGAGCTGGTCGGGCACAGAGGGCTTGCTTAGGTTTCCCCAGTGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR-3UTR TCA 90 bp GCCAAAGAGAGATGGCCAGGCACCTTGGCCCCTGCCACCCGTCAATCAAATTCCCATGTGTGTCTCTGCTaGGAAGGTGGGGTGAGGAGT +
Preference number: 2 (lower is better)
Translates to: AKERWPGTLAPATRQSNSHVCLC*EGGVRS
Trigger: ACTCCTCACCCCACCTTCTCAGCAGAGACACACATG...GGAATTTGATTGACGGGTGGCAGGGGCCAAGGTGCCTGGCCATCTCTCTTTGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR-3UTR CCA 90 bp GCCAAAGAGAGATGGCCAGGCACCTTGGCCCCTGCCACCCGTCAATCAAATTCCCTGTGGGACAGAAGCTaGTGCCTGAGAGTTGGGAGA +
Preference number: 2 (lower is better)
Translates to: AKERWPGTLAPATRQSNSLWDRS*CLRVGR
Trigger: TCTCCCAACTCTCAGGCACCAGCTTCTGTCCCACAG...GGAATTTGATTGACGGGTGGCAGGGGCCAAGGTGCCTGGCCATCTCTCTTTGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR-3UTR TCA 90 bp CTGCTTTTGAAGTCTATCTTGAGAGGCACAATAGTGCCCCCTGCTGGAGACTTCTGTGCCTGCACTCTCTaGCCCCTGACCTCTGACCCC +
Preference number: 2 (lower is better)
Translates to: LLLKSILRGTIVPPAGDFCACTL*PLTSDP
Trigger: GGGGTCAGAGGTCAGGGGTCAGAGAGTGCAGGCACA...GAAGTCTCCAGCAGGGGGCACTATTGTGCCTCTCAAGATAGACTTCAAAAGCAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR-3UTR TCA 90 bp TCACTGGGGAAACCTAAGCAAGCCCTCTGTGCCCGACCAGCTCAAACCCTCTTTACAGAAGCTGGTGCCTaGGAGTTGGGAGAGAGTCCA +
Preference number: 2 (lower is better)
Translates to: SLGKPKQALCARPAQTLFTEAGA*ELGESP
Trigger: TGGACTCTCTCCCAACTCTCAGGCACCAGCTTCTGT...AAAGAGGGTTTGAGCTGGTCGGGCACAGAGGGCTTGCTTAGGTTTCCCCAGTGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR-3UTR TCA 90 bp AAGAGAGATGGCCAGGCACCTTGGCCCCTGCCACCCGTCAATCAAATTCCATCTACGCCCGAGTCTCGCTaGTATCCTAGAGACCCAAGA +
Preference number: 2 (lower is better)
Translates to: KRDGQAPWPLPPVNQIPSTPESR*YPRDPR
Trigger: TCTTGGGTCTCTAGGATATCAGCGAGACTCGGGCGT...AGATGGAATTTGATTGACGGGTGGCAGGGGCCAAGGTGCCTGGCCATCTCTCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR-3UTR GCA 90 bp GCCAAAGAGAGATGGCCAGGCACCTTGGCCCCTGCCACCCGTCAATCAAATTCCGTCTTTCCTTGTGCGTaGATGCATGAGTGCACGTGT +
Preference number: 2 (lower is better)
Translates to: AKERWPGTLAPATRQSNSVFPCA*MHECTC
Trigger: ACACGTGCACTCATGCATGCACGCACAAGGAAAGAC...GGAATTTGATTGACGGGTGGCAGGGGCCAAGGTGCCTGGCCATCTCTCTTTGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR-3UTR TCA 90 bp GCTATGAGTTTAGCATCTCCCTTCATCTTGCAAGGGTCCCCAAGAAGCGCTTGGAAGCACTCTACCAACTaGGAGCCAGAGCCCCACTTG +
Preference number: 2 (lower is better)
Translates to: AMSLASPFILQGSPRSAWKHSTN*EPEPHL
Trigger: CAAGTGGGGCTCTGGCTCTCAGTTGGTAGAGTGCTT...CCAAGCGCTTCTTGGGGACCCTTGCAAGATGAAGGGAGATGCTAAACTCATAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR-3UTR CCA 90 bp TCACTGGGGAAACCTAAGCAAGCCCTCTGTGCCCGACCAGCTCAAACCCTCTTTACATGCGGCCAAAGATaGAGTCTCTGTGGGACAGAA +
Preference number: 2 (lower is better)
Translates to: SLGKPKQALCARPAQTLFTCGQR*SLCGTE
Trigger: TTCTGTCCCACAGAGACTCCATCTTTGGCCGCATGT...AAAGAGGGTTTGAGCTGGTCGGGCACAGAGGGCTTGCTTAGGTTTCCCCAGTGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR CAA 90 bp ATCCCTGCATTTCCTGCAGGCCCAGGAAGTCAGCAGGATATTCCTTaGCCATACGCTGACATACCCTGTTCACCAACACTTCTGACCCTG +
Preference number: 2 (lower is better)
Translates to: IPAFPAGPGSQQDIP*PYADIPCSPTLLTL
Trigger: CAGGGTCAGAAGTGTTGGTGAACAGGGTATGTCAGCGTATGGCAAAGGAATATCCTGCTGACTTCCTGGGCCTGCAGGAAATGCAGGGAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR-3UTR TCA 90 bp TTCTCTGGCAGTTTGCCACCAGCTAAGGTAAGGGAGTTTTCTCCCTACTTCTCAATCTCTGGCCTCCTCTaGCCCCATGTTCCCCTTGAG +
Preference number: 2 (lower is better)
Translates to: FSGSLPPAKVREFSPYFSISGLL*PHVPLE
Trigger: CTCAAGGGGAACATGGGGTCAGAGGAGGCCAGAGAT...TGAGAAGTAGGGAGAAAACTCCCTTACCTTAGCTGGTGGCAAACTGCCAGAGAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR-3UTR TCA 90 bp TGTCTCTTTAGCATTTGGGGGATTCGCTTTCAGAATCAGGAGATTCCTCCCTCTTGGACATCTTCTTTGTaGGGGGACCCCGGCCAGCCT +
Preference number: 2 (lower is better)
Translates to: CLFSIWGIRFQNQEIPPSWTSSL*GDPGQP
Trigger: AGGCTGGCCGGGGTCCCCTCACAAAGAAGATGTCCA...AGAGGGAGGAATCTCCTGATTCTGAAAGCGAATCCCCCAAATGCTAAAGAGACA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR-3UTR CCA 90 bp GCCAAAGAGAGATGGCCAGGCACCTTGGCCCCTGCCACCCGTCAATCAAATTCCTTCCCTGTGCTTCTGTaGTCACTTGTATGTTTTGCT +
Preference number: 2 (lower is better)
Translates to: AKERWPGTLAPATRQSNSFPVLL*SLVCFA
Trigger: AGCAAAACATACAAGTGACCACAGAAGCACAGGGAA...GGAATTTGATTGACGGGTGGCAGGGGCCAAGGTGCCTGGCCATCTCTCTTTGGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR CAA 90 bp AGGTCCACAGGACACCAAGGGTCCATGCTGTTACTCTCCTATTACTaGGAGTCAGGGTCTCTCGATGAACCTGTAAGCCTGGCAGTAAAC +
Preference number: 2 (lower is better)
Translates to: RSTGHQGSMLLLSYY*ESGSLDEPVSLAVN
Trigger: GTTTACTGCCAGGCTTACAGGTTCATCGAGAGACCCTGACTCCAAGTAATAGGAGAGTAACAGCATGGACCCTTGGTGTCCTGTGGACCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR CAA 90 bp GCGGACACCTCAATCATCTCTCTCTCTCTGCTTTTGAAGTCTATCTaGAGAGGCACAATAGTGCCCCCTGCTGGAGACTTCCCACAAGTC +
Preference number: 2 (lower is better)
Translates to: ADTSIISLSLLLKSI*RGTIVPPAGDFPQV
Trigger: GACTTGTGGGAAGTCTCCAGCAGGGGGCACTATTGTGCCTCTCAAGATAGACTTCAAAAGCAGAGAGAGAGAGATGATTGAGGTGTCCGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR CAA 90 bp CCCAAAAGGAAGGCGGACACCTCAATCATCTCTCTCTCTCTGCTTTaGAAGTCTATCTTGAGAGGCACAATAGTGCCCCCTGCTGGAGAC +
Preference number: 2 (lower is better)
Translates to: PKRKADTSIISLSLL*KSILRGTIVPPAGD
Trigger: GTCTCCAGCAGGGGGCACTATTGTGCCTCTCAAGATAGACTTCAAAAGCAGAGAGAGAGAGATGATTGAGGTGTCCGCCTTCCTTTTGGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR-3UTR TCA 90 bp CAGGTGATGCCATTGGCCAACACTTCATTCACAATGTCCGTCTGGCATCTCGGATCCTTTGCCATACGCTaGCATACCCTGTTCACCAAC +
Preference number: 2 (lower is better)
Translates to: QVMPLANTSFTMSVWHLGSFAIR*HTLFTN
Trigger: GTTGGTGAACAGGGTATGTCAGCGTATGGCAAAGGA...TCCGAGATGCCAGACGGACATTGTGAATGAAGTGTTGGCCAATGGCATCACCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR-3UTR TCA 90 bp GCCAAAGAGAGATGGCCAGGCACCTTGGCCCCTGCCACCCGTCAATCAAATTCCCTGTGCTCTCTCTTATaGCTACATCACATACTTTTC +
Preference number: 2 (lower is better)
Translates to: AKERWPGTLAPATRQSNSLCSLL*LHHILF
Trigger: GAAAAGTATGTGATGTAGTCATAAGAGAGAGCACAG...GGAATTTGATTGACGGGTGGCAGGGGCCAAGGTGCCTGGCCATCTCTCTTTGGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR-3UTR GCA 90 bp CAGGTGATGCCATTGGCCAACACTTCATTCACAATGTCCGTCTGGCATCTCGGATCTGACCCTGTCTCCTaGAGACACTGGACATCTTCT +
Preference number: 2 (lower is better)
Translates to: QVMPLANTSFTMSVWHLGSDPVS*RHWTSS
Trigger: AGAAGATGTCCAGTGTCTGCAGGAGACAGGGTCAGA...TCCGAGATGCCAGACGGACATTGTGAATGAAGTGTTGGCCAATGGCATCACCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR-3UTR GCA 90 bp AAGAGAGATGGCCAGGCACCTTGGCCCCTGCCACCCGTCAATCAAATTCCATCTAGCAGGATATTCCTTTaGCATACGCTGACATACCCT +
Preference number: 2 (lower is better)
Translates to: KRDGQAPWPLPPVNQIPSSRIFL*HTLTYP
Trigger: AGGGTATGTCAGCGTATGGCAAAGGAATATCCTGCT...AGATGGAATTTGATTGACGGGTGGCAGGGGCCAAGGTGCCTGGCCATCTCTCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR-3UTR GCA 90 bp TCACTGGGGAAACCTAAGCAAGCCCTCTGTGCCCGACCAGCTCAAACCCTCTTTCCTCTGCATCTTTGCTaGTACACAAAATACCGGCAA +
Preference number: 2 (lower is better)
Translates to: SLGKPKQALCARPAQTLFPLHLC*YTKYRQ
Trigger: TTGCCGGTATTTTGTGTAGCAGCAAAGATGCAGAGG...AAAGAGGGTTTGAGCTGGTCGGGCACAGAGGGCTTGCTTAGGTTTCCCCAGTGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR-3UTR CCA 90 bp CAGGTGATGCCATTGGCCAACACTTCATTCACAATGTCCGTCTGGCATCTCGGACCAAAGCAAGCAGTTTaGTTGACTGCTGGCATCTGC +
Preference number: 2 (lower is better)
Translates to: QVMPLANTSFTMSVWHLGPKQAV*LTAGIC
Trigger: GCAGATGCCAGCAGTCAACCAAACTGCTTGCTTTGG...TCCGAGATGCCAGACGGACATTGTGAATGAAGTGTTGGCCAATGGCATCACCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR-3UTR GCA 90 bp TGTCTCTTTAGCATTTGGGGGATTCGCTTTCAGAATCAGGAGATTCCTCCCTCTTGGGACAGAAGCTGGTaGCTGAGAGTTGGGAGAGAG +
Preference number: 2 (lower is better)
Translates to: CLFSIWGIRFQNQEIPPSWDRSW*LRVGRE
Trigger: CTCTCTCCCAACTCTCAGGCACCAGCTTCTGTCCCA...AGAGGGAGGAATCTCCTGATTCTGAAAGCGAATCCCCCAAATGCTAAAGAGACA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR-3UTR GCA 90 bp CTACATGTTTCTTCAGAACACATCTGTAACTTTTATCTTTGGCGTATGCCAGTGCTGCCGAGGCAACCCTaGCCTCTGGACAGGACCCAC +
Preference number: 2 (lower is better)
Translates to: LHVSSEHICNFYLWRMPVLPRQP*PLDRTH
Trigger: GTGGGTCCTGTCCAGAGGGCAGGGTTGCCTCGGCAG...CACTGGCATACGCCAAAGATAAAAGTTACAGATGTGTTCTGAAGAAACATGTAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR-3UTR CCA 90 bp CTACATGTTTCTTCAGAACACATCTGTAACTTTTATCTTTGGCGTATGCCAGTGCAGGTGCAGCGATGGTaGGAGGGAAGAGCCAGCGGC +
Preference number: 2 (lower is better)
Translates to: LHVSSEHICNFYLWRMPVQVQRW*EGRASG
Trigger: GCCGCTGGCTCTTCCCTCCCACCATCGCTGCACCTG...CACTGGCATACGCCAAAGATAAAAGTTACAGATGTGTTCTGAAGAAACATGTAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR-3UTR TCA 90 bp TCCACCTTCTTCTGGTCTTCTTCCCTGTATATGCCCACCCTCTTCTACTTGGTCGATATGCCTGGGAATTaGCTTCAGGACTTTCAGCAG +
Preference number: 2 (lower is better)
Translates to: STFFWSSSLYMPTLFYLVDMPGN*LQDFQQ
Trigger: CTGCTGAAAGTCCTGAAGTCAATTCCCAGGCATATC...GACCAAGTAGAAGAGGGTGGGCATATACAGGGAAGAAGACCAGAAGAAGGTGGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR-3UTR TCA 90 bp TTAAACTTCCATCTGGACTTTATTCCAAAGGCCCCTGTGTCTCACACACACACTTGTGTGACGACCTTGTaGTCTTGCCCCTGCCAAGCA +
Preference number: 2 (lower is better)
Translates to: LNFHLDFIPKAPVSHTHTCVTTL*SCPCQA
Trigger: TGCTTGGCAGGGGCAAGATCACAAGGTCGTCACACA...AGTGTGTGTGTGAGACACAGGGGCCTTTGGAATAAAGTCCAGATGGAAGTTTAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR-3UTR GCA 90 bp TGTCTCTTTAGCATTTGGGGGATTCGCTTTCAGAATCAGGAGATTCCTCCCTCTCCTCAGCTTCCCAAGTaGTGGGATAACAGGTGTGTG +
Preference number: 2 (lower is better)
Translates to: CLFSIWGIRFQNQEIPPSPQLPK*WDNRCV
Trigger: CACACACCTGTTATCCCAGCACTTGGGAAGCTGAGG...AGAGGGAGGAATCTCCTGATTCTGAAAGCGAATCCCCCAAATGCTAAAGAGACA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR-3UTR GCA 90 bp TTAAACTTCCATCTGGACTTTATTCCAAAGGCCCCTGTGTCTCACACACACACTTCCCAGATTCTCCCATaGTGGCCTTTGGGCTTCAGC +
Preference number: 2 (lower is better)
Translates to: LNFHLDFIPKAPVSHTHTSQILP*WPLGFS
Trigger: GCTGAAGCCCAAAGGCCAGCATGGGAGAATCTGGGA...AGTGTGTGTGTGAGACACAGGGGCCTTTGGAATAAAGTCCAGATGGAAGTTTAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR-3UTR GCA 90 bp GTCTCTGCTCCACCAATCCCAGGTGGATCCCAAGTTCCTGAAGATCTAGCATCTCGTTTAATGAGCACTTaGCTGTGCAGACAGAGAATG +
Preference number: 2 (lower is better)
Translates to: VSAPPIPGGSQVPEDLASRLMST*LCRQRM
Trigger: CATTCTCTGTCTGCACAGGCAAGTGCTCATTAAACG...AGATGCTAGATCTTCAGGAACTTGGGATCCACCTGGGATTGGTGGAGCAGAGAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR-3UTR CCA 90 bp AAGAGAGATGGCCAGGCACCTTGGCCCCTGCCACCCGTCAATCAAATTCCATCTTTAATCAGCACCACGTaGATCTTATCATCATGGCTT +
Preference number: 2 (lower is better)
Translates to: KRDGQAPWPLPPVNQIPSLISTT*ILSSWL
Trigger: AAGCCATGATGATAAGATCCACGTGGTGCTGATTAA...AGATGGAATTTGATTGACGGGTGGCAGGGGCCAAGGTGCCTGGCCATCTCTCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR-3UTR CCA 90 bp CTACATGTTTCTTCAGAACACATCTGTAACTTTTATCTTTGGCGTATGCCAGTGGCCAGCGGCTCAGGGTaGGGGGTGGATCATGTGTGT +
Preference number: 2 (lower is better)
Translates to: LHVSSEHICNFYLWRMPVASGSG*GVDHVC
Trigger: ACACACATGATCCACCCCCCACCCTGAGCCGCTGGC...CACTGGCATACGCCAAAGATAAAAGTTACAGATGTGTTCTGAAGAAACATGTAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR-3UTR TCA 90 bp CCTACCTTAAATGTCTCTTCAGCCTCATTTCTCCATAGCCCCCTGGCTAAACACATGCTATTGTTGTTCTaGGATCTCTGGCCTCCTCTG +
Preference number: 2 (lower is better)
Translates to: PTLNVSSASFLHSPLAKHMLLLF*DLWPPL
Trigger: CAGAGGAGGCCAGAGATCTCAGAACAACAATAGCAT...GTGTTTAGCCAGGGGGCTATGGAGAAATGAGGCTGAAGAGACATTTAAGGTAGG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR-3UTR GCA 90 bp TTAGCTGCAGGAATTGTTCCAAAGCAAGCAGTTTGGTTGACTGCTGGCATCTGCTCCTATAGGTGGCTCTaGTTCTATTATGCCCTCCCT +
Preference number: 2 (lower is better)
Translates to: LAAGIVPKQAVWLTAGICSYRWL*FYYALP
Trigger: AGGGAGGGCATAATAGAAGCAGAGCCACCTATAGGA...GCAGATGCCAGCAGTCAACCAAACTGCTTGCTTTGGAACAATTCCTGCAGCTAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR-3UTR GCA 90 bp CTGCTTTTGAAGTCTATCTTGAGAGGCACAATAGTGCCCCCTGCTGGAGACTTCATTATCTTCCCAGAATaGATTCCCCAAAGGGGGATG +
Preference number: 2 (lower is better)
Translates to: LLLKSILRGTIVPPAGDFIIFPE*IPQRGM
Trigger: CATCCCCCTTTGGGGAATGCATTCTGGGAAGATAAT...GAAGTCTCCAGCAGGGGGCACTATTGTGCCTCTCAAGATAGACTTCAAAAGCAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR-3UTR CCA 90 bp TGTCTCTTTAGCATTTGGGGGATTCGCTTTCAGAATCAGGAGATTCCTCCCTCTCATCTGCTGTGTCTCTaGCTGGCAAGCCTTAATCAG +
Preference number: 2 (lower is better)
Translates to: CLFSIWGIRFQNQEIPPSHLLCL*LASLNQ
Trigger: CTGATTAAGGCTTGCCAGCCAGAGACACAGCAGATG...AGAGGGAGGAATCTCCTGATTCTGAAAGCGAATCCCCCAAATGCTAAAGAGACA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR-3UTR CCA 90 bp TGTCTCTTTAGCATTTGGGGGATTCGCTTTCAGAATCAGGAGATTCCTCCCTCTTTCTCCATAGCCCCCTaGCTAAACACACCCTCCAAA +
Preference number: 2 (lower is better)
Translates to: CLFSIWGIRFQNQEIPPSFSIAP*LNTPSK
Trigger: TTTGGAGGGTGTGTTTAGCCAGGGGGCTATGGAGAA...AGAGGGAGGAATCTCCTGATTCTGAAAGCGAATCCCCCAAATGCTAAAGAGACA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR-3UTR CCA 90 bp TGTCTCTTTAGCATTTGGGGGATTCGCTTTCAGAATCAGGAGATTCCTCCCTCTGTTTTTATTCAGTGCTaGGGATCGAACCCAGGGGTC +
Preference number: 2 (lower is better)
Translates to: CLFSIWGIRFQNQEIPPSVFIQC*GSNPGV
Trigger: GACCCCTGGGTTCGATCCCCAGCACTGAATAAAAAC...AGAGGGAGGAATCTCCTGATTCTGAAAGCGAATCCCCCAAATGCTAAAGAGACA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR-3UTR CCA 90 bp TGTCTCTTTAGCATTTGGGGGATTCGCTTTCAGAATCAGGAGATTCCTCCCTCTAATAGTGCCCCCTGCTaGAGACTTCCCACAAGTCAA +
Preference number: 2 (lower is better)
Translates to: CLFSIWGIRFQNQEIPPSNSAPC*RLPTSQ
Trigger: TTGACTTGTGGGAAGTCTCCAGCAGGGGGCACTATT...AGAGGGAGGAATCTCCTGATTCTGAAAGCGAATCCCCCAAATGCTAAAGAGACA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR CAA 90 bp AGACTTCCCACAAGTCAAGATTTCTGCAGTTTGGCTGGCTTAAGGTaGTGGCATACTGAGTGTCAGAGCCCTCTCTACACATTAAGTCAC +
Preference number: 2 (lower is better)
Translates to: RLPTSQDFCSLAGLR*WHTECQSPLYTLSH
Trigger: GTGACTTAATGTGTAGAGAGGGCTCTGACACTCAGTATGCCACAACCTTAAGCCAGCCAAACTGCAGAAATCTTGACTTGTGGGAAGTCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR CAA 90 bp ACCTTCTTCTGGTCTTCTTCCCTGTATATGCCCACCCTCTTCTACTaGGTCACCAAGATACTTCGCCCAATATGTGAGGAGAGGAATATC +
Preference number: 2 (lower is better)
Translates to: TFFWSSSLYMPTLFY*VTKILRPICEERNI
Trigger: GATATTCCTCTCCTCACATATTGGGCGAAGTATCTTGGTGACCAAGTAGAAGAGGGTGGGCATATACAGGGAAGAAGACCAGAAGAAGGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR-3UTR TCA 90 bp ATCTGGACATTGGTGATTCCCTACATTGGTTTCTACAAACAGGGAATTCTGTCCTTTACAGAGGAGTCCTaGCCCCATCCCAGGAATGGT +
Preference number: 2 (lower is better)
Translates to: IWTLVIPYIGFYKQGILSFTEES*PHPRNG
Trigger: ACCATTCCTGGGATGGGGTCAGGACTCCTCTGTAAA...GGACAGAATTCCCTGTTTGTAGAAACCAATGTAGGGAATCACCAATGTCCAGAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR-3UTR TCA 90 bp ATCTGGACATTGGTGATTCCCTACATTGGTTTCTACAAACAGGGAATTCTGTCCGTTCACCAACACTTCTaGCCCTGTCTCCTGCAGACA +
Preference number: 2 (lower is better)
Translates to: IWTLVIPYIGFYKQGILSVHQHF*PCLLQT
Trigger: TGTCTGCAGGAGACAGGGTCAGAAGTGTTGGTGAAC...GGACAGAATTCCCTGTTTGTAGAAACCAATGTAGGGAATCACCAATGTCCAGAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR-3UTR TCA 90 bp CTGCTTTTGAAGTCTATCTTGAGAGGCACAATAGTGCCCCCTGCTGGAGACTTCGGAAATGTACAGATGTaGGTACCAGCCCAAAATAAC +
Preference number: 2 (lower is better)
Translates to: LLLKSILRGTIVPPAGDFGNVQM*VPAQNN
Trigger: GTTATTTTGGGCTGGTACTCACATCTGTACATTTCC...GAAGTCTCCAGCAGGGGGCACTATTGTGCCTCTCAAGATAGACTTCAAAAGCAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR-3UTR GCA 90 bp CAGGTGATGCCATTGGCCAACACTTCATTCACAATGTCCGTCTGGCATCTCGGATACTTGGTCTTCCTTTaGTTGGAGGATGACTTATGT +
Preference number: 2 (lower is better)
Translates to: QVMPLANTSFTMSVWHLGYLVFL*LEDDLC
Trigger: ACATAAGTCATCCTCCAAGCAAAGGAAGACCAAGTA...TCCGAGATGCCAGACGGACATTGTGAATGAAGTGTTGGCCAATGGCATCACCTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR-3UTR GCA 90 bp TATCAAGTAAGCACTCTACCAGTGAGCCACTCACTGGGGAATTCTAGGCAGGCTGGATTATACCAGGCTTaGACCTCCATATCTAGCTTT +
Preference number: 2 (lower is better)
Translates to: YQVSTLPVSHSLGNSRQAGLYQA*TSISSF
Trigger: AAAGCTAGATATGGAGGTGCAAGCCTGGTATAATCC...AGCCTGCCTAGAATTCCCCAGTGAGTGGCTCACTGGTAGAGTGCTTACTTGATA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR-3UTR GCA 90 bp TCCACCTTCTTCTGGTCTTCTTCCCTGTATATGCCCACCCTCTTCTACTTGGTCTTGAACTCACAATTCTaGTCTCACCAACTGAGTCCT +
Preference number: 2 (lower is better)
Translates to: STFFWSSSLYMPTLFYLVLNSQF*SHQLSP
Trigger: AGGACTCAGTTGGTGAGAGCAGAATTGTGAGTTCAA...GACCAAGTAGAAGAGGGTGGGCATATACAGGGAAGAAGACCAGAAGAAGGTGGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR-3UTR GCA 90 bp TTCTCTGGCAGTTTGCCACCAGCTAAGGTAAGGGAGTTTTCTCCCTACTTCTCAGACACCAAGGGTCCATaGTGTTACTCTCCTATTACT +
Preference number: 2 (lower is better)
Translates to: FSGSLPPAKVREFSPYFSDTKGP*CYSPIT
Trigger: AGTAATAGGAGAGTAACAGCATGGACCCTTGGTGTC...TGAGAAGTAGGGAGAAAACTCCCTTACCTTAGCTGGTGGCAAACTGCCAGAGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR-3UTR CCA 90 bp CTACATGTTTCTTCAGAACACATCTGTAACTTTTATCTTTGGCGTATGCCAGTGCGCCCCCACCCTCATTaGTGCATTCTAGACAAGCCC +
Preference number: 2 (lower is better)
Translates to: LHVSSEHICNFYLWRMPVRPHPH*CILDKP
Trigger: GGGCTTGTCTAGAATGCACCAATGAGGGTGGGGGCG...CACTGGCATACGCCAAAGATAAAAGTTACAGATGTGTTCTGAAGAAACATGTAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR-3UTR CCA 90 bp AGATGTCCCTTCTCTATCCTTAAACTTCCATCTGGACTTTATTCCAAAGGCCCCCTGGTGCCTGAGAGTTaGGAGAGAGTCCAGCTTTTT +
Preference number: 2 (lower is better)
Translates to: RCPFSILKLPSGLYSKGPLVPES*ERVQLF
Trigger: AAAAAGCTGGACTCTCTCCCAACTCTCAGGCACCAG...GGGGCCTTTGGAATAAAGTCCAGATGGAAGTTTAAGGATAGAGAAGGGACATCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR-3UTR TCA 90 bp GTCTCTGCTCCACCAATCCCAGGTGGATCCCAAGTTCCTGAAGATCTAGCATCTTCCCAGGAATGGTTCTaGAGAATACAAATCAAGAAT +
Preference number: 2 (lower is better)
Translates to: VSAPPIPGGSQVPEDLASSQEWF*RIQIKN
Trigger: ATTCTTGATTTGTATTCTTCAGAACCATTCCTGGGA...AGATGCTAGATCTTCAGGAACTTGGGATCCACCTGGGATTGGTGGAGCAGAGAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR-3UTR TCA 90 bp TGTCTCTTTAGCATTTGGGGGATTCGCTTTCAGAATCAGGAGATTCCTCCCTCTCTGAAGATCTCTCACTaGAATACCACACACACACAC +
Preference number: 2 (lower is better)
Translates to: CLFSIWGIRFQNQEIPPSLKISH*NTTHTH
Trigger: GTGTGTGTGTGTGGTATTTCAGTGAGAGATCTTCAG...AGAGGGAGGAATCTCCTGATTCTGAAAGCGAATCCCCCAAATGCTAAAGAGACA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR-3UTR GCA 90 bp TGTCTCTTTAGCATTTGGGGGATTCGCTTTCAGAATCAGGAGATTCCTCCCTCTCTAGAGTTACCAGTGTaGACTATCACATCTGGCCAA +
Preference number: 2 (lower is better)
Translates to: CLFSIWGIRFQNQEIPPSLELPV*TITSGQ
Trigger: TTGGCCAGATGTGATAGTGCACACTGGTAACTCTAG...AGAGGGAGGAATCTCCTGATTCTGAAAGCGAATCCCCCAAATGCTAAAGAGACA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR-3UTR GCA 90 bp CTGCTTTTGAAGTCTATCTTGAGAGGCACAATAGTGCCCCCTGCTGGAGACTTCCAAGACTTTCGAGAATaGTCAGAACTTCATAGCCAT +
Preference number: 2 (lower is better)
Translates to: LLLKSILRGTIVPPAGDFQDFRE*SELHSH
Trigger: ATGGCTATGAAGTTCTGAGCATTCTCGAAAGTCTTG...GAAGTCTCCAGCAGGGGGCACTATTGTGCCTCTCAAGATAGACTTCAAAAGCAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR-3UTR CCA 90 bp TTAAACTTCCATCTGGACTTTATTCCAAAGGCCCCTGTGTCTCACACACACACTCTTTCAACCACCATCTaGAAGAGTTCGACTCCCTCT +
Preference number: 2 (lower is better)
Translates to: LNFHLDFIPKAPVSHTHTLSTTI*KSSTPS
Trigger: AGAGGGAGTCGAACTCTTCCAGATGGTGGTTGAAAG...AGTGTGTGTGTGAGACACAGGGGCCTTTGGAATAAAGTCCAGATGGAAGTTTAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR CAA 90 bp TTGACTATTTACAGATTGGGAATCCATTGTCTGCCTGGCAACTATTaGGACACAGTCCCACCAGTGGCTCACATTACGCAATCAGAATCT +
Preference number: 2 (lower is better)
Translates to: LTIYRLGIHCLPGNY*DTVPPVAHITQSES
Trigger: AGATTCTGATTGCGTAATGTGAGCCACTGGTGGGACTGTGTCCAAATAGTTGCCAGGCAGACAATGGATTCCCAATCTGTAAATAGTCAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR-3UTR TCA 90 bp TCCACCTTCTTCTGGTCTTCTTCCCTGTATATGCCCACCCTCTTCTACTTGGTCAACAACAAACTTTCCTaGAATGTCAGGGTAATTGGT +
Preference number: 2 (lower is better)
Translates to: STFFWSSSLYMPTLFYLVNNKLS*NVRVIG
Trigger: ACCAATTACCCTGACATTTCAGGAAAGTTTGTTGTT...GACCAAGTAGAAGAGGGTGGGCATATACAGGGAAGAAGACCAGAAGAAGGTGGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR-3UTR GCA 90 bp CTACATGTTTCTTCAGAACACATCTGTAACTTTTATCTTTGGCGTATGCCAGTGCCCCACCCTCATTGGTaGATTCTAGACAAGCCCTCT +
Preference number: 2 (lower is better)
Translates to: LHVSSEHICNFYLWRMPVPHPHW*ILDKPS
Trigger: AGAGGGCTTGTCTAGAATGCACCAATGAGGGTGGGG...CACTGGCATACGCCAAAGATAAAAGTTACAGATGTGTTCTGAAGAAACATGTAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR-3UTR GCA 90 bp CCTACCTTAAATGTCTCTTCAGCCTCATTTCTCCATAGCCCCCTGGCTAAACACACCTTCTTTCCAGCATaGCTAACATATCTTGACGTA +
Preference number: 2 (lower is better)
Translates to: PTLNVSSASFLHSPLAKHTFFPA*LTYLDV
Trigger: TACGTCAAGATATGTTAGGCATGCTGGAAAGAAGGT...GTGTTTAGCCAGGGGGCTATGGAGAAATGAGGCTGAAGAGACATTTAAGGTAGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR-3UTR GCA 90 bp GCTATGAGTTTAGCATCTCCCTTCATCTTGCAAGGGTCCCCAAGAAGCGCTTGGAGGACTGTAGGTATGTaGTATACCTGTTTTTATTCA +
Preference number: 2 (lower is better)
Translates to: AMSLASPFILQGSPRSAWRTVGM*YTCFYS
Trigger: TGAATAAAAACAGGTATAGCACATACCTACAGTCCT...CCAAGCGCTTCTTGGGGACCCTTGCAAGATGAAGGGAGATGCTAAACTCATAGC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR-3UTR CCA 90 bp ATCTGGACATTGGTGATTCCCTACATTGGTTTCTACAAACAGGGAATTCTGTCCAGTTTGGTTGACTGCTaGCATCTGCTGTGTGCTCAA +
Preference number: 2 (lower is better)
Translates to: IWTLVIPYIGFYKQGILSSLVDC*HLLCAQ
Trigger: TTGAGCACACAGCAGATGCCAGCAGTCAACCAAACT...GGACAGAATTCCCTGTTTGTAGAAACCAATGTAGGGAATCACCAATGTCCAGAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR-3UTR CCA 90 bp GCTATGAGTTTAGCATCTCCCTTCATCTTGCAAGGGTCCCCAAGAAGCGCTTGGCATAGATACTTCCCCTaGGTATCTAAACTATTTTCT +
Preference number: 2 (lower is better)
Translates to: AMSLASPFILQGSPRSAWHRYFP*VSKLFS
Trigger: AGAAAATAGTTTAGATACCCAGGGGAAGTATCTATG...CCAAGCGCTTCTTGGGGACCCTTGCAAGATGAAGGGAGATGCTAAACTCATAGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR-3UTR GCA 90 bp TATGTTATCTCCCTTAGGATTCTCTTTCACCTGCTCCAAGGTTTTGTTTTGTTTCTGGCATCTGCTGTGTaGTCAAAGCTATTGCCAGCC +
Preference number: 2 (lower is better)
Translates to: YVISLRILFHLLQGFVLFLASAV*SKLLPA
Trigger: GGCTGGCAATAGCTTTGAGCACACAGCAGATGCCAG...AAACAAAACAAAACCTTGGAGCAGGTGAAAGAGAATCCTAAGGGAGATAACATA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR-3UTR GCA 90 bp TGTCTCTTTAGCATTTGGGGGATTCGCTTTCAGAATCAGGAGATTCCTCCCTCTGGATTCTCTTTCACCTaGTCCAAGGTTTTGTTTTGT +
Preference number: 2 (lower is better)
Translates to: CLFSIWGIRFQNQEIPPSGFSFT*SKVLFC
Trigger: ACAAAACAAAACCTTGGAGCAGGTGAAAGAGAATCC...AGAGGGAGGAATCTCCTGATTCTGAAAGCGAATCCCCCAAATGCTAAAGAGACA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR-3UTR GCA 90 bp CTACATGTTTCTTCAGAACACATCTGTAACTTTTATCTTTGGCGTATGCCAGTGTCATACCTCCACTTCTaGTTGTGCCTGCACTCTCTG +
Preference number: 2 (lower is better)
Translates to: LHVSSEHICNFYLWRMPVSYLHF*LCLHSL
Trigger: CAGAGAGTGCAGGCACAAGCAGAAGTGGAGGTATGA...CACTGGCATACGCCAAAGATAAAAGTTACAGATGTGTTCTGAAGAAACATGTAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR-3UTR CCA 90 bp TGTCTCTTTAGCATTTGGGGGATTCGCTTTCAGAATCAGGAGATTCCTCCCTCTGGTGATTCCCTACATTaGTTTCTACAAACAGGGAAT +
Preference number: 2 (lower is better)
Translates to: CLFSIWGIRFQNQEIPPSGDSLH*FLQTGN
Trigger: ATTCCCTGTTTGTAGAAACCAATGTAGGGAATCACC...AGAGGGAGGAATCTCCTGATTCTGAAAGCGAATCCCCCAAATGCTAAAGAGACA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR-3UTR CCA 90 bp TCCACCTTCTTCTGGTCTTCTTCCCTGTATATGCCCACCCTCTTCTACTTGGTCATATGTAATCAAATCTaGACATTGGTGATTCCCTAC +
Preference number: 2 (lower is better)
Translates to: STFFWSSSLYMPTLFYLVICNQI*TLVIPY
Trigger: GTAGGGAATCACCAATGTCCAGATTTGATTACATAT...GACCAAGTAGAAGAGGGTGGGCATATACAGGGAAGAAGACCAGAAGAAGGTGGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR-3UTR CCA 90 bp CTACATGTTTCTTCAGAACACATCTGTAACTTTTATCTTTGGCGTATGCCAGTGTCACCAACTGAGTCCTaGGGATTATACCAGGCTTGC +
Preference number: 2 (lower is better)
Translates to: LHVSSEHICNFYLWRMPVSPTES*GLYQAC
Trigger: GCAAGCCTGGTATAATCCCCAGGACTCAGTTGGTGA...CACTGGCATACGCCAAAGATAAAAGTTACAGATGTGTTCTGAAGAAACATGTAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR-3UTR CCA 90 bp TGTCTCTTTAGCATTTGGGGGATTCGCTTTCAGAATCAGGAGATTCCTCCCTCTTGCTCTGATCCCATTTaGTTCTTTATCCCTACTACT +
Preference number: 2 (lower is better)
Translates to: CLFSIWGIRFQNQEIPPSCSDPI*FFIPTT
Trigger: AGTAGTAGGGATAAAGAACCAAATGGGATCAGAGCA...AGAGGGAGGAATCTCCTGATTCTGAAAGCGAATCCCCCAAATGCTAAAGAGACA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR CAA 90 bp TCAAAAAGATGTAACCTCCGAAACAAATCATTGACTATTTACAGATaGGGAATCCATTGTCTGCCTGGCAACTATTTGGACACAGTCCCA +
Preference number: 2 (lower is better)
Translates to: SKRCNLRNKSLTIYR*GIHCLPGNYLDTVP
Trigger: TGGGACTGTGTCCAAATAGTTGCCAGGCAGACAATGGATTCCCAATCTGTAAATAGTCAATGATTTGTTTCGGAGGTTACATCTTTTTGA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR-3UTR TCA 90 bp TCATTGACTATTTACAGATTGGGAATCCATTGTCTGCCTGGCAACTATTTGGACAATCTTTATGGACCTTaGAATCATGGAGACGTTGGA +
Preference number: 2 (lower is better)
Translates to: SLTIYRLGIHCLPGNYLDNLYGP*NHGDVG
Trigger: TCCAACGTCTCCATGATTTCAAGGTCCATAAAGATT...GTCCAAATAGTTGCCAGGCAGACAATGGATTCCCAATCTGTAAATAGTCAATGA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR-3UTR CCA 90 bp TCATTGACTATTTACAGATTGGGAATCCATTGTCTGCCTGGCAACTATTTGGACTCTACTCCGATGGATTaGCAATGCTATTGTTGTTCT +
Preference number: 2 (lower is better)
Translates to: SLTIYRLGIHCLPGNYLDSTPMD*QCYCCS
Trigger: AGAACAACAATAGCATTGCCAATCCATCGGAGTAGA...GTCCAAATAGTTGCCAGGCAGACAATGGATTCCCAATCTGTAAATAGTCAATGA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR CAA 90 bp CCAGCCCAAAATAACTCAAAAAGATGTAACCTCCGAAACAAATCATaGACTATTTACAGATTGGGAATCCATTGTCTGCCTGGCAACTAT +
Preference number: 2 (lower is better)
Translates to: PAQNNSKRCNLRNKS*TIYRLGIHCLPGNY
Trigger: ATAGTTGCCAGGCAGACAATGGATTCCCAATCTGTAAATAGTCAATGATTTGTTTCGGAGGTTACATCTTTTTGAGTTATTTTGGGCTGG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR CCA 72 bp TCATGTGTGTCTCTGCTGAGAAGGTGGGGTGAGGAGTaGGGGCAGGTCAGTGGGCAGCTCGCGGTCCTCCAG +
Preference number: 3 (lower is better)
Translates to: SCVSLLRRWGEE*GQVSGQLAVLQ
Trigger: CTGGAGGACCGCGAGCTGCCCACTGACCTGCCCCCACTCCTCACCCCACCTTCTCAGCAGAGACACACATGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR TCA 72 bp AGGTCAGTGGGCAGCTCGCGGTCCTCCAGCTTTACCTaGATGAAGCGGTTACGGGCCAGCGGCATGTTAGGC +
Preference number: 3 (lower is better)
Translates to: RSVGSSRSSSFT*MKRLRASGMLG
Trigger: GCCTAACATGCCGCTGGCCCGTAACCGCTTCATTCAGGTAAAGCTGGAGGACCGCGAGCTGCCCACTGACCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR GCA 72 bp GTCCATGCACTTGGTGAAACACTCAAGGACGGTCACTaGCGAGGCAACCCTGCCCTCTGGACAGGACCCACG +
Preference number: 3 (lower is better)
Translates to: VHALGETLKDGH*RGNPALWTGPT
Trigger: CGTGGGTCCTGTCCAGAGGGCAGGGTTGCCTCGGCAGTGACCGTCCTTGAGTGTTTCACCAAGTGCATGGAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR CCA 72 bp CTCAAGGACGGTCACTGCCGAGGCAACCCTGCCCTCTaGACAGGACCCACGAGTGTGGATGCTGACACCTTT +
Preference number: 3 (lower is better)
Translates to: LKDGHCRGNPAL*TGPTSVDADTF
Trigger: AAAGGTGTCAGCATCCACACTCGTGGGTCCTGTCCAGAGGGCAGGGTTGCCTCGGCAGTGACCGTCCTTGAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR GCA 72 bp GGCTCTACCACTGAGCCACGCCCCCACCCTCATTGGTaGATTCTAGACAAGCCCTCTACAGTGAGCCATGCC +
Preference number: 3 (lower is better)
Translates to: GSTTEPRPHPHW*ILDKPSTVSHA
Trigger: GGCATGGCTCACTGTAGAGGGCTTGTCTAGAATGCACCAATGAGGGTGGGGGCGTGGCTCAGTGGTAGAGCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR GCA 72 bp GCCCGGTCAGTCTTTCCTTGTGCGTGCATGCATGAGTaGACGTGTGCGCACCTGCACAAGGTCCACAGGACA +
Preference number: 3 (lower is better)
Translates to: ARSVFPCACMHE*TCAHLHKVHRT
Trigger: TGTCCTGTGGACCTTGTGCAGGTGCGCACACGTGCACTCATGCATGCACGCACAAGGAAAGACTGACCGGGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR-3UTR CAA 90 bp AAGAGAGATGGCCAGGCACCTTGGCCCCTGCCACCCGTCAATCAAATTCCATCTCAGACTTTGATCACCTaGGGGGTGGGTGTCCGTGGG +
Preference number: 3 (lower is better)
Translates to: KRDGQAPWPLPPVNQIPSQTLIT*GVGVRG
Trigger: CCCACGGACACCCACCCCCAAGGTGATCAAAGTCTG...AGATGGAATTTGATTGACGGGTGGCAGGGGCCAAGGTGCCTGGCCATCTCTCTT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR-3UTR CAA 90 bp GCCAAAGAGAGATGGCCAGGCACCTTGGCCCCTGCCACCCGTCAATCAAATTCCTTAGCCATGGGGCCATaGGTTCCCTGTGCTTCTGTG +
Preference number: 3 (lower is better)
Translates to: AKERWPGTLAPATRQSNSLAMGP*VPCASV
Trigger: CACAGAAGCACAGGGAACCAATGGCCCCATGGCTAA...GGAATTTGATTGACGGGTGGCAGGGGCCAAGGTGCCTGGCCATCTCTCTTTGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR CCA 72 bp AGGGGCTCTACCACTGAGCCACGCCCCCACCCTCATTaGTGCATTCTAGACAAGCCCTCTACAGTGAGCCAT +
Preference number: 3 (lower is better)
Translates to: RGSTTEPRPHPH*CILDKPSTVSH
Trigger: ATGGCTCACTGTAGAGGGCTTGTCTAGAATGCACCAATGAGGGTGGGGGCGTGGCTCAGTGGTAGAGCCCCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR CCA 72 bp GAGGCAACCCTGCCCTCTGGACAGGACCCACGAGTGTaGATGCTGACACCTTTCAACCACCATCTGGAAGAG +
Preference number: 3 (lower is better)
Translates to: EATLPSGQDPRV*MLTPFNHHLEE
Trigger: CTCTTCCAGATGGTGGTTGAAAGGTGTCAGCATCCACACTCGTGGGTCCTGTCCAGAGGGCAGGGTTGCCTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR CCA 72 bp AAACCTCTACCGCTGAGTCATACTCCAGCCCCTCACTaGGGAAACCTAAGCAAGCCCTCTGTGCCCGACCAG +
Preference number: 3 (lower is better)
Translates to: KPLPLSHTPAPH*GNLSKPSVPDQ
Trigger: CTGGTCGGGCACAGAGGGCTTGCTTAGGTTTCCCCAGTGAGGGGCTGGAGTATGACTCAGCGGTAGAGGTTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR CCA 72 bp ACTGCTTCCACCTTCAACTTCCCTGCCAAAGAGAGATaGCCAGGCACCTTGGCCCCTGCCACCCGTCAATCA +
Preference number: 3 (lower is better)
Translates to: TASTFNFPAKER*PGTLAPATRQS
Trigger: TGATTGACGGGTGGCAGGGGCCAAGGTGCCTGGCCATCTCTCTTTGGCAGGGAAGTTGAAGGTGGAAGCAGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR TCA 72 bp AGGCTTCACAGCATAGGCACTTGGTCCCATGACAACTaGGAAGTGGGCAGGGCTGACCCTCAGGATCTCTCC +
Preference number: 3 (lower is better)
Translates to: RLHSIGTWSHDN*EVGRADPQDLS
Trigger: GGAGAGATCCTGAGGGTCAGCCCTGCCCACTTCTCAGTTGTCATGGGACCAAGTGCCTATGCTGTGAAGCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR-3UTR CAA 90 bp TCACTGGGGAAACCTAAGCAAGCCCTCTGTGCCCGACCAGCTCAAACCCTCTTTTACCTCCACTTCTGCTaGTGCCTGCACTCTCTGACC +
Preference number: 3 (lower is better)
Translates to: SLGKPKQALCARPAQTLFYLHFC*CLHSLT
Trigger: GGTCAGAGAGTGCAGGCACAAGCAGAAGTGGAGGTA...AAAGAGGGTTTGAGCTGGTCGGGCACAGAGGGCTTGCTTAGGTTTCCCCAGTGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR TCA 72 bp CTCTGCTCCACCAATCCCAGGTGGATCCCAAGTTCCTaGAGATCTAGCATCTTCCACTGGGAAGAGAGCGCG +
Preference number: 3 (lower is better)
Translates to: LCSTNPRWIPSS*RSSIFHWEESA
Trigger: CGCGCTCTCTTCCCAGTGGAAGATGCTAGATCTTCAGGAACTTGGGATCCACCTGGGATTGGTGGAGCAGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR CCA 72 bp GATGCAGACTTTGATCACCTTGGGGGTGGGTGTCCGTaGGCTTCACCAACAACTATAAGCATCCCTCCCCCA +
Preference number: 3 (lower is better)
Translates to: DADFDHLGGGCP*ASPTTISIPPP
Trigger: TGGGGGAGGGATGCTTATAGTTGTTGGTGAAGCCCACGGACACCCACCCCCAAGGTGATCAAAGTCTGCATC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR CCA 72 bp TCAACTTCCCTGCCAAAGAGAGATGGCCAGGCACCTTaGCCCCTGCCACCCGTCAATCAAATTCCATCTAGC +
Preference number: 3 (lower is better)
Translates to: STSLPKRDGQAP*PLPPVNQIPSS
Trigger: GCTAGATGGAATTTGATTGACGGGTGGCAGGGGCCAAGGTGCCTGGCCATCTCTCTTTGGCAGGGAAGTTGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR-3UTR CAA 90 bp GCCAAAGAGAGATGGCCAGGCACCTTGGCCCCTGCCACCCGTCAATCAAATTCCCTACTGAGTCTCTCATaGGTGAGTTCTAGGCAAGTG +
Preference number: 3 (lower is better)
Translates to: AKERWPGTLAPATRQSNSLLSLS*VSSRQV
Trigger: CACTTGCCTAGAACTCACCAATGAGAGACTCAGTAG...GGAATTTGATTGACGGGTGGCAGGGGCCAAGGTGCCTGGCCATCTCTCTTTGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR-3UTR CAA 90 bp TCACTGGGGAAACCTAAGCAAGCCCTCTGTGCCCGACCAGCTCAAACCCTCTTTATGGGTGTTGGGGATTaGAACTCAGGTCCTCGAGAC +
Preference number: 3 (lower is better)
Translates to: SLGKPKQALCARPAQTLFMGVGD*NSGPRD
Trigger: GTCTCGAGGACCTGAGTTCAAATCCCCAACACCCAT...AAAGAGGGTTTGAGCTGGTCGGGCACAGAGGGCTTGCTTAGGTTTCCCCAGTGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR GCA 72 bp TTGGTGCATTCTAGACAAGCCCTCTACAGTGAGCCATaGCCAGACTCCTCACTGGTAGAACCTAGCAGGCAC +
Preference number: 3 (lower is better)
Translates to: LVHSRQALYSEP*PDSSLVEPSRH
Trigger: GTGCCTGCTAGGTTCTACCAGTGAGGAGTCTGGGCATGGCTCACTGTAGAGGGCTTGTCTAGAATGCACCAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR GCA 72 bp GCACCTGCACAAGGTCCACAGGACACCAAGGGTCCATaGTGTTACTCTCCTATTACTTGGAGTCAGGGTCTC +
Preference number: 3 (lower is better)
Translates to: APAQGPQDTKGP*CYSPITWSQGL
Trigger: GAGACCCTGACTCCAAGTAATAGGAGAGTAACAGCATGGACCCTTGGTGTCCTGTGGACCTTGTGCAGGTGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR CCA 72 bp GTTGGGAAAATGCCCTTGGCCAACTCATCCTATAGGTaGCTCTGCTTCTATTATGCCCTCCCTCCCTCCCTC +
Preference number: 3 (lower is better)
Translates to: VGKMPLANSSYR*LCFYYALPPSL
Trigger: GAGGGAGGGAGGGAGGGCATAATAGAAGCAGAGCCACCTATAGGATGAGTTGGCCAAGGGCATTTTCCCAAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR CCA 72 bp CGAGAGATGTCTGGTTTGTGGGTACCGAAGGGAGGATaGCGTGTAGTCCATGCACTTGGTGAAACACTCAAG +
Preference number: 3 (lower is better)
Translates to: REMSGLWVPKGG*RVVHALGETLK
Trigger: CTTGAGTGTTTCACCAAGTGCATGGACTACACGCCATCCTCCCTTCGGTACCCACAAACCAGACATCTCTCG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR CCA 72 bp CGATGCCTTCTGAAAACTCGAGAGATGTCTGGTTTGTaGGTACCGAAGGGAGGATGGCGTGTAGTCCATGCA +
Preference number: 3 (lower is better)
Translates to: RCLLKTREMSGL*VPKGGWRVVHA
Trigger: TGCATGGACTACACGCCATCCTCCCTTCGGTACCCACAAACCAGACATCTCTCGAGTTTTCAGAAGGCATCG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR CCA 72 bp AAGCATCCCTCCCCCATCATCTGCTGTGTCTCTGGCTaGCAAGCCTTAATCAGCACCACGTGGATCTTATCA +
Preference number: 3 (lower is better)
Translates to: KHPSPIICCVSG*QALISTTWILS
Trigger: TGATAAGATCCACGTGGTGCTGATTAAGGCTTGCCAGCCAGAGACACAGCAGATGATGGGGGAGGGATGCTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR-3UTR CAA 90 bp ATCTGGACATTGGTGATTCCCTACATTGGTTTCTACAAACAGGGAATTCTGTCCCTCCCATGCTGGCCTTaGGGCTTCAGCGCCTCCCCA +
Preference number: 3 (lower is better)
Translates to: IWTLVIPYIGFYKQGILSLPCWP*GFSASP
Trigger: TGGGGAGGCGCTGAAGCCCAAAGGCCAGCATGGGAG...GGACAGAATTCCCTGTTTGTAGAAACCAATGTAGGGAATCACCAATGTCCAGAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR-3UTR CAA 90 bp AAGAGAGATGGCCAGGCACCTTGGCCCCTGCCACCCGTCAATCAAATTCCATCTCAAGATTTCTGCAGTTaGGCTGGCTTAAGGTTGTGG +
Preference number: 3 (lower is better)
Translates to: KRDGQAPWPLPPVNQIPSQDFCS*AGLRLW
Trigger: CCACAACCTTAAGCCAGCCAAACTGCAGAAATCTTG...AGATGGAATTTGATTGACGGGTGGCAGGGGCCAAGGTGCCTGGCCATCTCTCTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR-3UTR CAA 90 bp GCTATGAGTTTAGCATCTCCCTTCATCTTGCAAGGGTCCCCAAGAAGCGCTTGGTTGGCTGGCTTAAGGTaGTGGCATACTGAGTGTCAG +
Preference number: 3 (lower is better)
Translates to: AMSLASPFILQGSPRSAWLAGLR*WHTECQ
Trigger: CTGACACTCAGTATGCCACAACCTTAAGCCAGCCAA...CCAAGCGCTTCTTGGGGACCCTTGCAAGATGAAGGGAGATGCTAAACTCATAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR-3UTR CAA 90 bp TCACTGGGGAAACCTAAGCAAGCCCTCTGTGCCCGACCAGCTCAAACCCTCTTTCTTTTGAAGTCTATCTaGAGAGGCACAATAGTGCCC +
Preference number: 3 (lower is better)
Translates to: SLGKPKQALCARPAQTLFLLKSI*RGTIVP
Trigger: GGGCACTATTGTGCCTCTCAAGATAGACTTCAAAAG...AAAGAGGGTTTGAGCTGGTCGGGCACAGAGGGCTTGCTTAGGTTTCCCCAGTGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR TCA 72 bp CCCAGGAAGTCAGCAGGATATTCCTTTGCCATACGCTaGCATACCCTGTTCACCAACACTTCTGACCCTGTC +
Preference number: 3 (lower is better)
Translates to: PRKSAGYSFAIR*HTLFTNTSDPV
Trigger: GACAGGGTCAGAAGTGTTGGTGAACAGGGTATGTCAGCGTATGGCAAAGGAATATCCTGCTGACTTCCTGGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR GCA 72 bp TTCCTGCAGGCCCAGGAAGTCAGCAGGATATTCCTTTaGCATACGCTGACATACCCTGTTCACCAACACTTC +
Preference number: 3 (lower is better)
Translates to: FLQAQEVSRIFL*HTLTYPVHQHF
Trigger: GAAGTGTTGGTGAACAGGGTATGTCAGCGTATGGCAAAGGAATATCCTGCTGACTTCCTGGGCCTGCAGGAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR GCA 72 bp CCCAATACAGGTTCCCGAGAACCTCTGCATCTTTGCTaGTACACAAAATACCGGCAAGAAGCCCCTACAGTC +
Preference number: 3 (lower is better)
Translates to: PNTGSREPLHLC*YTKYRQEAPTV
Trigger: GACTGTAGGGGCTTCTTGCCGGTATTTTGTGTAGCAGCAAAGATGCAGAGGTTCTCGGGAACCTGTATTGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR CCA 72 bp GTACACGTGGCCACACCTGGCTTTTTATATGGGTGTTaGGGATTTGAACTCAGGTCCTCGAGACTGGATAGC +
Preference number: 3 (lower is better)
Translates to: VHVATPGFLYGC*GFELRSSRLDS
Trigger: GCTATCCAGTCTCGAGGACCTGAGTTCAAATCCCCAACACCCATATAAAAAGCCAGGTGTGGCCACGTGTAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR CCA 72 bp CTCCTGGTCCCTAAGATAACTGGCTACAACGTCCTCTaGAGACACCTTGTGTTGTCTTCCCAAAGTTCCACC +
Preference number: 3 (lower is better)
Translates to: LLVPKITGYNVL*RHLVLSSQSST
Trigger: GGTGGAACTTTGGGAAGACAACACAAGGTGTCTCCAGAGGACGTTGTAGCCAGTTATCTTAGGGACCAGGAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR-3UTR CAA 90 bp CTGCTTTTGAAGTCTATCTTGAGAGGCACAATAGTGCCCCCTGCTGGAGACTTCGTTGGGAAAATGCCCTaGGCCAACTCATCCTATAGG +
Preference number: 3 (lower is better)
Translates to: LLLKSILRGTIVPPAGDFVGKMP*ANSSYR
Trigger: CCTATAGGATGAGTTGGCCAAGGGCATTTTCCCAAC...GAAGTCTCCAGCAGGGGGCACTATTGTGCCTCTCAAGATAGACTTCAAAAGCAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR-3UTR CAA 90 bp GCTATGAGTTTAGCATCTCCCTTCATCTTGCAAGGGTCCCCAAGAAGCGCTTGGGTGTGCTCAAAGCTATaGCCAGCCAACACTACTCTT +
Preference number: 3 (lower is better)
Translates to: AMSLASPFILQGSPRSAWVCSKL*PANTTL
Trigger: AAGAGTAGTGTTGGCTGGCAATAGCTTTGAGCACAC...CCAAGCGCTTCTTGGGGACCCTTGCAAGATGAAGGGAGATGCTAAACTCATAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR-3UTR CAA 90 bp GCTATGAGTTTAGCATCTCCCTTCATCTTGCAAGGGTCCCCAAGAAGCGCTTGGTTGTTGAGGGAAGACTaGAATCTGCTATCGTCCTGC +
Preference number: 3 (lower is better)
Translates to: AMSLASPFILQGSPRSAWLLRED*NLLSSC
Trigger: GCAGGACGATAGCAGATTCAAGTCTTCCCTCAACAA...CCAAGCGCTTCTTGGGGACCCTTGCAAGATGAAGGGAGATGCTAAACTCATAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR TCA 72 bp CAATGCTATTGTTGTTCTGAGATCTCTGGCCTCCTCTaGCCCCATGTTCCCCTTGAGAATGGCCAGTTCTCA +
Preference number: 3 (lower is better)
Translates to: QCYCCSEISGLL*PHVPLENGQFS
Trigger: TGAGAACTGGCCATTCTCAAGGGGAACATGGGGTCAGAGGAGGCCAGAGATCTCAGAACAACAATAGCATTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR TCA 72 bp TTCTACTCCGATGGATTGGCAATGCTATTGTTGTTCTaGGATCTCTGGCCTCCTCTGACCCCATGTTCCCCT +
Preference number: 3 (lower is better)
Translates to: FYSDGLAMLLLF*DLWPPLTPCSP
Trigger: AGGGGAACATGGGGTCAGAGGAGGCCAGAGATCTCAGAACAACAATAGCATTGCCAATCCATCGGAGTAGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR TCA 72 bp CCTCAGCTTCCCAAGTGCTGGGATAACAGGTGTGTGTaGGTGTGTGTGATGCTGCATCTGGATTTGATCTCA +
Preference number: 3 (lower is better)
Translates to: PQLPKCWDNRCV*VCVMLHLDLIS
Trigger: TGAGATCAAATCCAGATGCAGCATCACACACACTCACACACACCTGTTATCCCAGCACTTGGGAAGCTGAGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR TCA 72 bp TGCCATACGCTGACATACCCTGTTCACCAACACTTCTaGCCCTGTCTCCTGCAGACACTGGACATCTTCTTT +
Preference number: 3 (lower is better)
Translates to: CHTLTYPVHQHF*PCLLQTLDIFF
Trigger: AAAGAAGATGTCCAGTGTCTGCAGGAGACAGGGTCAGAAGTGTTGGTGAACAGGGTATGTCAGCGTATGGCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR GCA 72 bp ACTCCCAATACAGGTTCCCGAGAACCTCTGCATCTTTaGTGCTACACAAAATACCGGCAAGAAGCCCCTACA +
Preference number: 3 (lower is better)
Translates to: TPNTGSREPLHL*CYTKYRQEAPT
Trigger: TGTAGGGGCTTCTTGCCGGTATTTTGTGTAGCAGCAAAGATGCAGAGGTTCTCGGGAACCTGTATTGGGAGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR CCA 72 bp GCCTTAGCTGCAGGAATTGTTCCAAAGCAAGCAGTTTaGTTGACTGCTGGCATCTGCTGTGTGCTCAAAGCT +
Preference number: 3 (lower is better)
Translates to: ALAAGIVPKQAV*LTAGICCVLKA
Trigger: AGCTTTGAGCACACAGCAGATGCCAGCAGTCAACCAAACTGCTTGCTTTGGAACAATTCCTGCAGCTAAGGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR CCA 72 bp CCCAAGAAGCGCTTGGTTCTCTGTCTCTTTAGCATTTaGGGGATTCGCTTTCAGAATCAGGAGATTCCTCCC +
Preference number: 3 (lower is better)
Translates to: PKKRLVLCLFSI*GIRFQNQEIPP
Trigger: GGGAGGAATCTCCTGATTCTGAAAGCGAATCCCCCAAATGCTAAAGAGACAGAGAACCAAGCGCTTCTTGGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR-3UTR CAA 90 bp GCTATGAGTTTAGCATCTCCCTTCATCTTGCAAGGGTCCCCAAGAAGCGCTTGGACGTTTAATGAGCACTaGCCTGTGCAGACAGAGAAT +
Preference number: 3 (lower is better)
Translates to: AMSLASPFILQGSPRSAWTFNEH*PVQTEN
Trigger: ATTCTCTGTCTGCACAGGCAAGTGCTCATTAAACGT...CCAAGCGCTTCTTGGGGACCCTTGCAAGATGAAGGGAGATGCTAAACTCATAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR TCA 72 bp CTTATCATCATGGCTTCTGAGGGCTTCGATGCCTTCTaGAAACTCGAGAGATGTCTGGTTTGTGGGTACCGA +
Preference number: 3 (lower is better)
Translates to: LIIMASEGFDAF*KLERCLVCGYR
Trigger: TCGGTACCCACAAACCAGACATCTCTCGAGTTTTCAGAAGGCATCGAAGCCCTCAGAAGCCATGATGATAAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR TCA 72 bp ATCCAAAGACGCTGCCACAGATTAAAAACACTGAGGTaGCTGCGACTCACCTCCAAGCGTATCTCCAGAGTT +
Preference number: 3 (lower is better)
Translates to: IQRRCHRLKTLR*LRLTSKRISRV
Trigger: AACTCTGGAGATACGCTTGGAGGTGAGTCGCAGTCACCTCAGTGTTTTTAATCTGTGGCAGCGTCTTTGGAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR GCA 72 bp GTTGACTGCTGGCATCTGCTGTGTGCTCAAAGCTATTaGCAGCCAACACTACTCTTAGTAGCTTCTATCCCT +
Preference number: 3 (lower is better)
Translates to: VDCWHLLCAQSY*QPTLLLVASIP
Trigger: AGGGATAGAAGCTACTAAGAGTAGTGTTGGCTGGCAATAGCTTTGAGCACACAGCAGATGCCAGCAGTCAAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR GCA 72 bp TGCAGGAATTGTTCCAAAGCAAGCAGTTTGGTTGACTaGTGGCATCTGCTGTGTGCTCAAAGCTATTGCCAG +
Preference number: 3 (lower is better)
Translates to: CRNCSKASSLVD*WHLLCAQSYCQ
Trigger: CTGGCAATAGCTTTGAGCACACAGCAGATGCCAGCAGTCAACCAAACTGCTTGCTTTGGAACAATTCCTGCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR GCA 72 bp CTCCCATTCCGACTGACTGCCAGGACTGTAGGTATGTaGTATACCTGTTTTTATTCAGTGCTGGGGATCGAA +
Preference number: 3 (lower is better)
Translates to: LPFRLTARTVGM*YTCFYSVLGIE
Trigger: TTCGATCCCCAGCACTGAATAAAAACAGGTATAGCACATACCTACAGTCCTGGCAGTCAGTCGGAATGGGAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR CCA 72 bp CAAGCCTTAATCAGCACCACGTGGATCTTATCATCATaGCTTCTGAGGGCTTCGATGCCTTCTGAAAACTCG +
Preference number: 3 (lower is better)
Translates to: QALISTTWILSS*LLRASMPSENS
Trigger: CGAGTTTTCAGAAGGCATCGAAGCCCTCAGAAGCCATGATGATAAGATCCACGTGGTGCTGATTAAGGCTTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR CCA 72 bp CTTGAACTCACAATTCTGCTCTCACCAACTGAGTCCTaGGGATTATACCAGGCTTGCACCTCCATATCTAGC +
Preference number: 3 (lower is better)
Translates to: LELTILLSPTES*GLYQACTSISS
Trigger: GCTAGATATGGAGGTGCAAGCCTGGTATAATCCCCAGGACTCAGTTGGTGAGAGCAGAATTGTGAGTTCAAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR CCA 72 bp GAAGTCTATCTTGAGAGGCACAATAGTGCCCCCTGCTaGAGACTTCCCACAAGTCAAGATTTCTGCAGTTTG +
Preference number: 3 (lower is better)
Translates to: EVYLERHNSAPC*RLPTSQDFCSL
Trigger: CAAACTGCAGAAATCTTGACTTGTGGGAAGTCTCCAGCAGGGGGCACTATTGTGCCTCTCAAGATAGACTTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR CCA 72 bp CACCTTGTGTTGTCTTCCCAAAGTTCCACCTTCTTCTaGTCTTCTTCCCTGTATATGCCCACCCTCTTCTAC +
Preference number: 3 (lower is better)
Translates to: HLVLSSQSSTFF*SSSLYMPTLFY
Trigger: GTAGAAGAGGGTGGGCATATACAGGGAAGAAGACCAGAAGAAGGTGGAACTTTGGGAAGACAACACAAGGTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR-3UTR CAA 90 bp TATCAAGTAAGCACTCTACCAGTGAGCCACTCACTGGGGAATTCTAGGCAGGCTCTCCTGTGGCAAATATaGCTAAATGACTCTCTGGGA +
Preference number: 3 (lower is better)
Translates to: YQVSTLPVSHSLGNSRQALLWQI*LNDSLG
Trigger: TCCCAGAGAGTCATTTAGCAATATTTGCCACAGGAG...AGCCTGCCTAGAATTCCCCAGTGAGTGGCTCACTGGTAGAGTGCTTACTTGATA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR-3UTR CAA 90 bp CTGCTTTTGAAGTCTATCTTGAGAGGCACAATAGTGCCCCCTGCTGGAGACTTCTATCTTGACGTATACTaGGTCTTCCTTTGCTTGGAG +
Preference number: 3 (lower is better)
Translates to: LLLKSILRGTIVPPAGDFYLDVY*VFLCLE
Trigger: CTCCAAGCAAAGGAAGACCAAGTATACGTCAAGATA...GAAGTCTCCAGCAGGGGGCACTATTGTGCCTCTCAAGATAGACTTCAAAAGCAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR TCA 72 bp GTTACTCTCCTATTACTTGGAGTCAGGGTCTCTCGATaGACCTGTAAGCCTGGCAGTAAACAGATCTCAGAC +
Preference number: 3 (lower is better)
Translates to: VTLLLLGVRVSR*TCKPGSKQISD
Trigger: GTCTGAGATCTGTTTACTGCCAGGCTTACAGGTTCATCGAGAGACCCTGACTCCAAGTAATAGGAGAGTAAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR TCA 72 bp GACTGCAGCCTACACTACCATGCCTGGCTTCATTTCTaGAGATCTCTCACTGAAATACCACACACACACACA +
Preference number: 3 (lower is better)
Translates to: DCSLHYHAWLHF*RSLTEIPHTHT
Trigger: TGTGTGTGTGTGTGGTATTTCAGTGAGAGATCTTCAGAAATGAAGCCAGGCATGGTAGTGTAGGCTGCAGTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR GCA 72 bp TTTGAAGTCTATCTTGAGAGGCACAATAGTGCCCCCTaGTGGAGACTTCCCACAAGTCAAGATTTCTGCAGT +
Preference number: 3 (lower is better)
Translates to: FEVYLERHNSAP*WRLPTSQDFCS
Trigger: ACTGCAGAAATCTTGACTTGTGGGAAGTCTCCAGCAGGGGGCACTATTGTGCCTCTCAAGATAGACTTCAAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR-3UTR CAA 90 bp TGTCTCTTTAGCATTTGGGGGATTCGCTTTCAGAATCAGGAGATTCCTCCCTCTACTACTTGGTCTGGATaGGTCAGGAGATTCAAGACT +
Preference number: 3 (lower is better)
Translates to: CLFSIWGIRFQNQEIPPSTTWSG*VRRFKT
Trigger: AGTCTTGAATCTCCTGACCAATCCAGACCAAGTAGT...AGAGGGAGGAATCTCCTGATTCTGAAAGCGAATCCCCCAAATGCTAAAGAGACA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR TCA 72 bp CACACACACACTGTCTGCCCCTTTATACAACTGCTCTaGTCCCATTTGGTTCTTTATCCCTACTACTTGGTC +
Preference number: 3 (lower is better)
Translates to: HTHTVCPFIQLL*SHLVLYPYYLV
Trigger: GACCAAGTAGTAGGGATAAAGAACCAAATGGGATCAGAGCAGTTGTATAAAGGGGCAGACAGTGTGTGTGTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR TCA 72 bp TTTCTGCAGTTTGGCTGGCTTAAGGTTGTGGCATACTaGGTGTCAGAGCCCTCTCTACACATTAAGTCACTT +
Preference number: 3 (lower is better)
Translates to: FLQFGWLKVVAY*VSEPSLHIKSL
Trigger: AAGTGACTTAATGTGTAGAGAGGGCTCTGACACTCAGTATGCCACAACCTTAAGCCAGCCAAACTGCAGAAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR TCA 72 bp CTACCATGCCTGGCTTCATTTCTGAAGATCTCTCACTaGAATACCACACACACACACACACACACACACACA +
Preference number: 3 (lower is better)
Translates to: LPCLASFLKISH*NTTHTHTHTHT
Trigger: TGTGTGTGTGTGTGTGTGTGTGTGTGTGGTATTTCAGTGAGAGATCTTCAGAAATGAAGCCAGGCATGGTAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR GCA 72 bp CCTCCTGCCTCACTCTATGTGCTAGAGTTACCAGTGTaGACTATCACATCTGGCCAACTAGTTAGTTATTCT +
Preference number: 3 (lower is better)
Translates to: PPASLYVLELPV*TITSGQLVSYS
Trigger: AGAATAACTAACTAGTTGGCCAGATGTGATAGTGCACACTGGTAACTCTAGCACATAGAGTGAGGCAGGAGG
46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR GCA 72 bp AAAGTTCCACCTTCTTCTGGTCTTCTTCCCTGTATATaGCCACCCTCTTCTACTTGGTCACCAAGATACTTC +
Preference number: 3 (lower is better)
Translates to: KVPPSSGLLPCI*PPSSTWSPRYF
Trigger: GAAGTATCTTGGTGACCAAGTAGAAGAGGGTGGGCATATACAGGGAAGAAGACCAGAAGAAGGTGGAACTTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR CCA 72 bp CCATACTTCATTGAGGGAGTTTCTACTCCGATGGATTaGCAATGCTATTGTTGTTCTGAGATCTCTGGCCTC +
Preference number: 3 (lower is better)
Translates to: PYFIEGVSTPMD*QCYCCSEISGL
Trigger: GAGGCCAGAGATCTCAGAACAACAATAGCATTGCCAATCCATCGGAGTAGAAACTCCCTCAATGAAGTATGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR GCA 72 bp CACATTAAGTCACTTCACAGACGTTTAATGAGCACTTaGCTGTGCAGACAGAGAATGACAACACACACACAC +
Preference number: 3 (lower is better)
Translates to: HIKSLHRRLMST*LCRQRMTTHTH
Trigger: GTGTGTGTGTGTTGTCATTCTCTGTCTGCACAGGCAAGTGCTCATTAAACGTCTGTGAAGTGACTTAATGTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR CCA 72 bp CCATTTGGTTCTTTATCCCTACTACTTGGTCTGGATTaGTCAGGAGATTCAAGACTTTCGAGAATGCTCAGA +
Preference number: 3 (lower is better)
Translates to: PFGSLSLLLGLD*SGDSRLSRMLR
Trigger: TCTGAGCATTCTCGAAAGTCTTGAATCTCCTGACCAATCCAGACCAAGTAGTAGGGATAAAGAACCAAATGG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR-3UTR CAA 90 bp ATCTGGACATTGGTGATTCCCTACATTGGTTTCTACAAACAGGGAATTCTGTCCAAAGGAACAAGCATTTaGCTAGTTGGGAAAATGCCC +
Preference number: 3 (lower is better)
Translates to: IWTLVIPYIGFYKQGILSKGTSI*LVGKMP
Trigger: GGGCATTTTCCCAACTAGCAAAATGCTTGTTCCTTT...GGACAGAATTCCCTGTTTGTAGAAACCAATGTAGGGAATCACCAATGTCCAGAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR-3UTR CAA 90 bp TCATTGACTATTTACAGATTGGGAATCCATTGTCTGCCTGGCAACTATTTGGACAGATATGCCTGGGAATaGACTTCAGGACTTTCAGCA +
Preference number: 3 (lower is better)
Translates to: SLTIYRLGIHCLPGNYLDRYAWE*TSGLSA
Trigger: TGCTGAAAGTCCTGAAGTCAATTCCCAGGCATATCT...GTCCAAATAGTTGCCAGGCAGACAATGGATTCCCAATCTGTAAATAGTCAATGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR-3UTR CAA 90 bp TGTCTCTTTAGCATTTGGGGGATTCGCTTTCAGAATCAGGAGATTCCTCCCTCTCTCCGAAACAAATCATaGACTATTTACAGATTGGGA +
Preference number: 3 (lower is better)
Translates to: CLFSIWGIRFQNQEIPPSLRNKS*TIYRLG
Trigger: TCCCAATCTGTAAATAGTCAATGATTTGTTTCGGAG...AGAGGGAGGAATCTCCTGATTCTGAAAGCGAATCCCCCAAATGCTAAAGAGACA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR TCA 72 bp AACAACAACAACAACAACAACAACAACAAACTTTCCTaGAATGTCAGGGTAATTGGTCCTCGGTCAGAGCAG +
Preference number: 3 (lower is better)
Translates to: NNNNNNNNNKLS*NVRVIGPRSEQ
Trigger: CTGCTCTGACCGAGGACCAATTACCCTGACATTTCAGGAAAGTTTGTTGTTGTTGTTGTTGTTGTTGTTGTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR CCA 72 bp CTTTCCGTTGGGCCCATAATGGCCTTAAAAGATACATaGTGTTTCTCTTATTTTAGAGCTAAGGGAACATGG +
Preference number: 3 (lower is better)
Translates to: LSVGPIMALKDT*CFSYFRAKGTW
Trigger: CCATGTTCCCTTAGCTCTAAAATAAGAGAAACACCATGTATCTTTTAAGGCCATTATGGGCCCAACGGAAAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR TCA 72 bp GTTCCCTGTGCTTCTGTGGTCACTTGTATGTTTTGCTaGGTGACTTGTTTGTGTAACTTCTGGAAAGTAATA +
Preference number: 3 (lower is better)
Translates to: VPCASVVTCMFC*VTCLCNFWKVI
Trigger: TATTACTTTCCAGAAGTTACACAAACAAGTCACTCAGCAAAACATACAAGTGACCACAGAAGCACAGGGAAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR-3UTR CAA 90 bp CTACATGTTTCTTCAGAACACATCTGTAACTTTTATCTTTGGCGTATGCCAGTGTTGGTCTTCCTTTGCTaGGAGGATGACTTATGTTAT +
Preference number: 3 (lower is better)
Translates to: LHVSSEHICNFYLWRMPVLVFLC*EDDLCY
Trigger: ATAACATAAGTCATCCTCCAAGCAAAGGAAGACCAA...CACTGGCATACGCCAAAGATAAAAGTTACAGATGTGTTCTGAAGAAACATGTAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR TCA 72 bp ATAACTCAAAAAGATGTAACCTCCGAAACAAATCATTaGCTATTTACAGATTGGGAATCCATTGTCTGCCTG +
Preference number: 3 (lower is better)
Translates to: ITQKDVTSETNH*LFTDWESIVCL
Trigger: CAGGCAGACAATGGATTCCCAATCTGTAAATAGTCAATGATTTGTTTCGGAGGTTACATCTTTTTGAGTTAT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
CDS-3UTR GCA 90 bp GCCAAAGAGAGATGGCCAGGCACCTTGGCCCCTGCCACCCGTCAATCAAATTCCCCCACACTGGCTGCCTaGTCCCGAAGCAAGGCCAGG +
Preference number: 4 (lower is better)
Translates to: AKERWPGTLAPATRQSNSPTLAA*SRSKAR
Trigger: CCTGGCCTTGCTTCGGGAGCAGGCAGCCAGTGTGGG...GGAATTTGATTGACGGGTGGCAGGGGCCAAGGTGCCTGGCCATCTCTCTTTGGC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
CDS-3UTR CCA 90 bp AAGAGAGATGGCCAGGCACCTTGGCCCCTGCCACCCGTCAATCAAATTCCATCTCACAGTCCAGGCACCTaGCTGTGGCGGGTCCCCCAG +
Preference number: 4 (lower is better)
Translates to: KRDGQAPWPLPPVNQIPSHSPGT*LWRVPQ
Trigger: CTGGGGGACCCGCCACAGCCAGGTGCCTGGACTGTG...AGATGGAATTTGATTGACGGGTGGCAGGGGCCAAGGTGCCTGGCCATCTCTCTT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR CAA 72 bp TCACTGCTGACTTCCCAGATTCTCCCATGCTGGCCTTaGGGCTTCAGCGCCTCCCCAGACCCCTCCTGTCAC +
Preference number: 4 (lower is better)
Translates to: SLLTSQILPCWP*GFSASPDPSCH
Trigger: GTGACAGGAGGGGTCTGGGGAGGCGCTGAAGCCCAAAGGCCAGCATGGGAGAATCTGGGAAGTCAGCAGTGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
CDS-3UTR TCA 90 bp GCTATGAGTTTAGCATCTCCCTTCATCTTGCAAGGGTCCCCAAGAAGCGCTTGGGCTGCCTCCTCCACCTaGGTCCCCACACTGGCTGCC +
Preference number: 4 (lower is better)
Translates to: AMSLASPFILQGSPRSAWAASST*VPTLAA
Trigger: GGCAGCCAGTGTGGGGACTCAGGTGGAGGAGGCAGC...CCAAGCGCTTCTTGGGGACCCTTGCAAGATGAAGGGAGATGCTAAACTCATAGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
CDS-3UTR GCA 90 bp TCACTGGGGAAACCTAAGCAAGCCCTCTGTGCCCGACCAGCTCAAACCCTCTTTGTCCCCCAGAGCTCTTaGCTCCCACCAGAGGGCACA +
Preference number: 4 (lower is better)
Translates to: SLGKPKQALCARPAQTLFVPQSS*LPPEGT
Trigger: TGTGCCCTCTGGTGGGAGGCAAGAGCTCTGGGGGAC...AAAGAGGGTTTGAGCTGGTCGGGCACAGAGGGCTTGCTTAGGTTTCCCCAGTGA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
CDS-3UTR CCA 90 bp GCTATGAGTTTAGCATCTCCCTTCATCTTGCAAGGGTCCCCAAGAAGCGCTTGGGCTTCCCCTGGGTGCTaGGGACACTGGGACGCCTGG +
Preference number: 4 (lower is better)
Translates to: AMSLASPFILQGSPRSAWASPGC*GHWDAW
Trigger: CCAGGCGTCCCAGTGTCCCCAGCACCCAGGGGAAGC...CCAAGCGCTTCTTGGGGACCCTTGCAAGATGAAGGGAGATGCTAAACTCATAGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
CDS-3UTR CCA 90 bp CAGGTGATGCCATTGGCCAACACTTCATTCACAATGTCCGTCTGGCATCTCGGAGCAGCACACAGCGGGTaGGCCCAGACGTCCAGGGAG +
Preference number: 4 (lower is better)
Translates to: QVMPLANTSFTMSVWHLGAAHSG*AQTSRE
Trigger: CTCCCTGGACGTCTGGGCCCACCCGCTGTGTGCTGC...TCCGAGATGCCAGACGGACATTGTGAATGAAGTGTTGGCCAATGGCATCACCTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
CDS-3UTR CCA 90 bp TATCAAGTAAGCACTCTACCAGTGAGCCACTCACTGGGGAATTCTAGGCAGGCTCCAGGCACCTGGCTGTaGCGGGTCCCCCAGAGCTCT +
Preference number: 4 (lower is better)
Translates to: YQVSTLPVSHSLGNSRQAPGTWL*RVPQSS
Trigger: AGAGCTCTGGGGGACCCGCCACAGCCAGGTGCCTGG...AGCCTGCCTAGAATTCCCCAGTGAGTGGCTCACTGGTAGAGTGCTTACTTGATA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
CDS-3UTR CCA 90 bp GCCAAAGAGAGATGGCCAGGCACCTTGGCCCCTGCCACCCGTCAATCAAATTCCTGCCGTCTACCATGGTaGTTACCCGGGGCTTTTCCA +
Preference number: 4 (lower is better)
Translates to: AKERWPGTLAPATRQSNSCRLPW*LPGAFP
Trigger: TGGAAAAGCCCCGGGTAACCACCATGGTAGACGGCA...GGAATTTGATTGACGGGTGGCAGGGGCCAAGGTGCCTGGCCATCTCTCTTTGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
CDS-3UTR TCA 90 bp CTGCTTTTGAAGTCTATCTTGAGAGGCACAATAGTGCCCCCTGCTGGAGACTTCGTCCAGGGAGCATCCTaGAGCTGGCGCAGGCGCTGT +
Preference number: 4 (lower is better)
Translates to: LLLKSILRGTIVPPAGDFVQGAS*SWRRRC
Trigger: ACAGCGCCTGCGCCAGCTTCAGGATGCTCCCTGGAC...GAAGTCTCCAGCAGGGGGCACTATTGTGCCTCTCAAGATAGACTTCAAAAGCAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
CDS-3UTR TCA 90 bp TGTCTCTTTAGCATTTGGGGGATTCGCTTTCAGAATCAGGAGATTCCTCCCTCTCGTGGCTGGACTGGGTaGGGCTCAGGGACCTGCGCC +
Preference number: 4 (lower is better)
Translates to: CLFSIWGIRFQNQEIPPSRGWTG*GSGTCA
Trigger: GGCGCAGGTCCCTGAGCCTCACCCAGTCCAGCCACG...AGAGGGAGGAATCTCCTGATTCTGAAAGCGAATCCCCCAAATGCTAAAGAGACA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
CDS-3UTR GCA 90 bp TTAGCTGCAGGAATTGTTCCAAAGCAAGCAGTTTGGTTGACTGCTGGCATCTGCAGGGCTTCCCCTGGGTaGTGGGGACACTGGGACGCC +
Preference number: 4 (lower is better)
Translates to: LAAGIVPKQAVWLTAGICRASPG*WGHWDA
Trigger: GGCGTCCCAGTGTCCCCAGCACCCAGGGGAAGCCCT...GCAGATGCCAGCAGTCAACCAAACTGCTTGCTTTGGAACAATTCCTGCAGCTAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
CDS-3UTR CCA 90 bp TTCTCTGGCAGTTTGCCACCAGCTAAGGTAAGGGAGTTTTCTCCCTACTTCTCAGGGTGCTGGGGACACTaGGACGCCTGGCGCTCTCGA +
Preference number: 4 (lower is better)
Translates to: FSGSLPPAKVREFSPYFSGCWGH*DAWRSR
Trigger: TCGAGAGCGCCAGGCGTCCCAGTGTCCCCAGCACCC...TGAGAAGTAGGGAGAAAACTCCCTTACCTTAGCTGGTGGCAAACTGCCAGAGAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
CDS-3UTR CCA 90 bp GCTATGAGTTTAGCATCTCCCTTCATCTTGCAAGGGTCCCCAAGAAGCGCTTGGCCTGAGTCCCCACACTaGCTGCCTGCTCCCGAAGCA +
Preference number: 4 (lower is better)
Translates to: AMSLASPFILQGSPRSAWPESPH*LPAPEA
Trigger: TGCTTCGGGAGCAGGCAGCCAGTGTGGGGACTCAGG...CCAAGCGCTTCTTGGGGACCCTTGCAAGATGAAGGGAGATGCTAAACTCATAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
CDS-3UTR TCA 90 bp GTCTCTGCTCCACCAATCCCAGGTGGATCCCAAGTTCCTGAAGATCTAGCATCTGGGCCAGCAGGGACTTaGGGATTCGTTCAGCTGCCT +
Preference number: 4 (lower is better)
Translates to: VSAPPIPGGSQVPEDLASGPAGT*GFVQLP
Trigger: AGGCAGCTGAACGAATCCTCAAGTCCCTGCTGGCCC...AGATGCTAGATCTTCAGGAACTTGGGATCCACCTGGGATTGGTGGAGCAGAGAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
CDS-3UTR GCA 90 bp TTAAACTTCCATCTGGACTTTATTCCAAAGGCCCCTGTGTCTCACACACACACTGCAGGGCAGCCACGCTaGACGGGGAACAGCCCTCGG +
Preference number: 4 (lower is better)
Translates to: LNFHLDFIPKAPVSHTHTAGQPR*TGNSPR
Trigger: CCGAGGGCTGTTCCCCGTGCAGCGTGGCTGCCCTGC...AGTGTGTGTGTGAGACACAGGGGCCTTTGGAATAAAGTCCAGATGGAAGTTTAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
CDS-3UTR CCA 90 bp GTCTCTGCTCCACCAATCCCAGGTGGATCCCAAGTTCCTGAAGATCTAGCATCTCCATCGGCACAGGCCTaGCATAAGTCGTCGGCACAG +
Preference number: 4 (lower is better)
Translates to: VSAPPIPGGSQVPEDLASPSAQA*HKSSAQ
Trigger: CTGTGCCGACGACTTATGCCAGGCCTGTGCCGATGG...AGATGCTAGATCTTCAGGAACTTGGGATCCACCTGGGATTGGTGGAGCAGAGAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
CDS-3UTR GCA 90 bp AGATGTCCCTTCTCTATCCTTAAACTTCCATCTGGACTTTATTCCAAAGGCCCCTGCCGGGAGCAGCGATaGCCATCGGCACAGGCCTGG +
Preference number: 4 (lower is better)
Translates to: RCPFSILKLPSGLYSKGPCREQR*PSAQAW
Trigger: CCAGGCCTGTGCCGATGGGCATCGCTGCTCCCGGCA...GGGGCCTTTGGAATAAAGTCCAGATGGAAGTTTAAGGATAGAGAAGGGACATCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
CDS-3UTR GCA 90 bp TATCAAGTAAGCACTCTACCAGTGAGCCACTCACTGGGGAATTCTAGGCAGGCTTGTCCCAGCACTTCCTaGTTCTGGGCCAGCAGGGAC +
Preference number: 4 (lower is better)
Translates to: YQVSTLPVSHSLGNSRQACPSTS*FWASRD
Trigger: GTCCCTGCTGGCCCAGAAGCAGGAAGTGCTGGGACA...AGCCTGCCTAGAATTCCCCAGTGAGTGGCTCACTGGTAGAGTGCTTACTTGATA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
CDS-3UTR GCA 90 bp GCTATGAGTTTAGCATCTCCCTTCATCTTGCAAGGGTCCCCAAGAAGCGCTTGGAAAGCCACTGCATTCTaGAGGGCAGCCACGCTGCAC +
Preference number: 4 (lower is better)
Translates to: AMSLASPFILQGSPRSAWKATAF*RAATLH
Trigger: GTGCAGCGTGGCTGCCCTGCAGAATGCAGTGGCTTT...CCAAGCGCTTCTTGGGGACCCTTGCAAGATGAAGGGAGATGCTAAACTCATAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
CDS-3UTR CCA 90 bp TTAGCTGCAGGAATTGTTCCAAAGCAAGCAGTTTGGTTGACTGCTGGCATCTGCTGCCCTGGGGGCTGGTaGTTAGGAACACCAGTGCCC +
Preference number: 4 (lower is better)
Translates to: LAAGIVPKQAVWLTAGICCPGGW*LGTPVP
Trigger: GGGCACTGGTGTTCCTAACCACCAGCCCCCAGGGCA...GCAGATGCCAGCAGTCAACCAAACTGCTTGCTTTGGAACAATTCCTGCAGCTAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
CDS-3UTR CCA 90 bp CAGGTGATGCCATTGGCCAACACTTCATTCACAATGTCCGTCTGGCATCTCGGAGACACAGAACCTGGCTaGCAGCCATGTAACCCAGGG +
Preference number: 4 (lower is better)
Translates to: QVMPLANTSFTMSVWHLGDTEPG*QPCNPG
Trigger: CCCTGGGTTACATGGCTGCCAGCCAGGTTCTGTGTC...TCCGAGATGCCAGACGGACATTGTGAATGAAGTGTTGGCCAATGGCATCACCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
CDS-3UTR TCA 90 bp TTCTCTGGCAGTTTGCCACCAGCTAAGGTAAGGGAGTTTTCTCCCTACTTCTCATCGTCCCCTTGGCCTTaGGCTTCATCCCCTCCTTGG +
Preference number: 4 (lower is better)
Translates to: FSGSLPPAKVREFSPYFSSSPWP*ASSPPW
Trigger: CCAAGGAGGGGATGAAGCTCAAGGCCAAGGGGACGA...TGAGAAGTAGGGAGAAAACTCCCTTACCTTAGCTGGTGGCAAACTGCCAGAGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
CDS-3UTR CCA 90 bp TCCACCTTCTTCTGGTCTTCTTCCCTGTATATGCCCACCCTCTTCTACTTGGTCAGCACTTCCTGCTTCTaGGCCAGCAGGGACTTGAGG +
Preference number: 4 (lower is better)
Translates to: STFFWSSSLYMPTLFYLVSTSCF*ASRDLR
Trigger: CCTCAAGTCCCTGCTGGCCCAGAAGCAGGAAGTGCT...GACCAAGTAGAAGAGGGTGGGCATATACAGGGAAGAAGACCAGAAGAAGGTGGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
CDS-3UTR GCA 90 bp CAGGTGATGCCATTGGCCAACACTTCATTCACAATGTCCGTCTGGCATCTCGGACCAGGCGGCAATCCTTaGAGAGCAACTGAGAACAAG +
Preference number: 4 (lower is better)
Translates to: QVMPLANTSFTMSVWHLGPGGNP*RATENK
Trigger: CTTGTTCTCAGTTGCTCTGCAAGGATTGCCGCCTGG...TCCGAGATGCCAGACGGACATTGTGAATGAAGTGTTGGCCAATGGCATCACCTG
52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
CDS-3UTR GCA 90 bp TATCAAGTAAGCACTCTACCAGTGAGCCACTCACTGGGGAATTCTAGGCAGGCTGGGGGTTCTGGTCTTTaGCTTCTTTGGGAGTCAGGG +
Preference number: 4 (lower is better)
Translates to: YQVSTLPVSHSLGNSRQAGGSGL*LLWESG
Trigger: CCCTGACTCCCAAAGAAGGCAAAGACCAGAACCCCC...AGCCTGCCTAGAATTCCCCAGTGAGTGGCTCACTGGTAGAGTGCTTACTTGATA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
CDS-3UTR CCA 90 bp TCACTGGGGAAACCTAAGCAAGCCCTCTGTGCCCGACCAGCTCAAACCCTCTTTGGCTTTTCCAGGCCATaGTATGCTGTTAGGAAGTCA +
Preference number: 4 (lower is better)
Translates to: SLGKPKQALCARPAQTLFGFSRP*YAVRKS
Trigger: TGACTTCCTAACAGCATACCATGGCCTGGAAAAGCC...AAAGAGGGTTTGAGCTGGTCGGGCACAGAGGGCTTGCTTAGGTTTCCCCAGTGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
CDS-3UTR GCA 90 bp CAGGTGATGCCATTGGCCAACACTTCATTCACAATGTCCGTCTGGCATCTCGGAACCGATGTCCAGTTGTaGCAGACAGTCCTGGCAATA +
Preference number: 4 (lower is better)
Translates to: QVMPLANTSFTMSVWHLGTDVQL*QTVLAI
Trigger: TATTGCCAGGACTGTCTGGCACAACTGGACATCGGT...TCCGAGATGCCAGACGGACATTGTGAATGAAGTGTTGGCCAATGGCATCACCTG
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
CDS-3UTR CCA 90 bp CTGCTTTTGAAGTCTATCTTGAGAGGCACAATAGTGCCCCCTGCTGGAGACTTCTTGGCCACCTGCTCCTaGCGCTCTATTTTGGTCAAC +
Preference number: 4 (lower is better)
Translates to: LLLKSILRGTIVPPAGDFLATCS*RSILVN
Trigger: GTTGACCAAAATAGAGCGCCAGGAGCAGGTGGCCAA...GAAGTCTCCAGCAGGGGGCACTATTGTGCCTCTCAAGATAGACTTCAAAAGCAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
CDS-3UTR CCA 90 bp TATGTTATCTCCCTTAGGATTCTCTTTCACCTGCTCCAAGGTTTTGTTTTGTTTAGGCAGCCGCCGCCTTaGCCACCTGCTCCTGGCGCT +
Preference number: 4 (lower is better)
Translates to: YVISLRILFHLLQGFVLFRQPPP*PPAPGA
Trigger: AGCGCCAGGAGCAGGTGGCCAAGGCGGCGGCTGCCT...AAACAAAACAAAACCTTGGAGCAGGTGAAAGAGAATCCTAAGGGAGATAACATA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR CAA 72 bp AACCACCATCTGGAAGAGTTCGACTCCCTCTTAACGTaGGGCATCTTTGCTGAACCACTTGAACATGCGGCC +
Preference number: 4 (lower is better)
Translates to: NHHLEEFDSLLT*GIFAEPLEHAA
Trigger: GGCCGCATGTTCAAGTGGTTCAGCAAAGATGCCCAACGTTAAGAGGGAGTCGAACTCTTCCAGATGGTGGTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR CAA 72 bp GGACACCAAGGGTCCATGCTGTTACTCTCCTATTACTaGGAGTCAGGGTCTCTCGATGAACCTGTAAGCCTG +
Preference number: 4 (lower is better)
Translates to: GHQGSMLLLSYY*ESGSLDEPVSL
Trigger: CAGGCTTACAGGTTCATCGAGAGACCCTGACTCCAAGTAATAGGAGAGTAACAGCATGGACCCTTGGTGTCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR CAA 72 bp CACTCCCAATACAGGTTCCCGAGAACCTCTGCATCTTaGCTGCTACACAAAATACCGGCAAGAAGCCCCTAC +
Preference number: 4 (lower is better)
Translates to: HSQYRFPRTSAS*LLHKIPARSPY
Trigger: GTAGGGGCTTCTTGCCGGTATTTTGTGTAGCAGCAAAGATGCAGAGGTTCTCGGGAACCTGTATTGGGAGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
CDS-3UTR TCA 90 bp TATCAAGTAAGCACTCTACCAGTGAGCCACTCACTGGGGAATTCTAGGCAGGCTGAAGTCACCAAGAAGTaGCCCCTTGGGATCCAGTAT +
Preference number: 4 (lower is better)
Translates to: YQVSTLPVSHSLGNSRQAEVTKK*PLGIQY
Trigger: ATACTGGATCCCAAGGGGTCACTTCTTGGTGACTTC...AGCCTGCCTAGAATTCCCCAGTGAGTGGCTCACTGGTAGAGTGCTTACTTGATA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
CDS-3UTR GCA 90 bp TGTCTCTTTAGCATTTGGGGGATTCGCTTTCAGAATCAGGAGATTCCTCCCTCTGGCTGGGCTCCACCCTaGTTCCCTATCTTGGTTCTA +
Preference number: 4 (lower is better)
Translates to: CLFSIWGIRFQNQEIPPSGWAPP*FPILVL
Trigger: TAGAACCAAGATAGGGAAGCAGGGTGGAGCCCAGCC...AGAGGGAGGAATCTCCTGATTCTGAAAGCGAATCCCCCAAATGCTAAAGAGACA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
CDS-3UTR GCA 90 bp AGATGTCCCTTCTCTATCCTTAAACTTCCATCTGGACTTTATTCCAAAGGCCCCGGCAGAGAAAGCCACTaGATTCTGCAGGGCAGCCAC +
Preference number: 4 (lower is better)
Translates to: RCPFSILKLPSGLYSKGPGRESH*ILQGSH
Trigger: GTGGCTGCCCTGCAGAATGCAGTGGCTTTCTCTGCC...GGGGCCTTTGGAATAAAGTCCAGATGGAAGTTTAAGGATAGAGAAGGGACATCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
CDS-3UTR CCA 90 bp TTAGCTGCAGGAATTGTTCCAAAGCAAGCAGTTTGGTTGACTGCTGGCATCTGCACTTGCCGTCTACCATaGTGGTTACCCGGGGCTTTT +
Preference number: 4 (lower is better)
Translates to: LAAGIVPKQAVWLTAGICTCRLP*WLPGAF
Trigger: AAAAGCCCCGGGTAACCACCATGGTAGACGGCAAGT...GCAGATGCCAGCAGTCAACCAAACTGCTTGCTTTGGAACAATTCCTGCAGCTAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR CAA 72 bp AGCCTTAGCTGCAGGAATTGTTCCAAAGCAAGCAGTTaGGTTGACTGCTGGCATCTGCTGTGTGCTCAAAGC +
Preference number: 4 (lower is better)
Translates to: SLSCRNCSKASS*VDCWHLLCAQS
Trigger: GCTTTGAGCACACAGCAGATGCCAGCAGTCAACCAAACTGCTTGCTTTGGAACAATTCCTGCAGCTAAGGCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR CAA 72 bp TGGCCACACCTGGCTTTTTATATGGGTGTTGGGGATTaGAACTCAGGTCCTCGAGACTGGATAGCAAGCGTT +
Preference number: 4 (lower is better)
Translates to: WPHLAFYMGVGD*NSGPRDWIASV
Trigger: AACGCTTGCTATCCAGTCTCGAGGACCTGAGTTCAAATCCCCAACACCCATATAAAAAGCCAGGTGTGGCCA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
CDS-3UTR TCA 90 bp CTGCTTTTGAAGTCTATCTTGAGAGGCACAATAGTGCCCCCTGCTGGAGACTTCCTTTGTAGTCCCCATTaGGGGAGAAGCGTTTCAAGA +
Preference number: 4 (lower is better)
Translates to: LLLKSILRGTIVPPAGDFLCSPH*GRSVSR
Trigger: TCTTGAAACGCTTCTCCCTCAATGGGGACTACAAAG...GAAGTCTCCAGCAGGGGGCACTATTGTGCCTCTCAAGATAGACTTCAAAAGCAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR CAA 72 bp TTCAGACCCACTCTTATCATCAGCCAGGTGATGCCATaGGCCAACACTTCATTCACAATGTCCGTCTGGCAT +
Preference number: 4 (lower is better)
Translates to: FRPTLIISQVMP*ANTSFTMSVWH
Trigger: ATGCCAGACGGACATTGTGAATGAAGTGTTGGCCAATGGCATCACCTGGCTGATGATAAGAGTGGGTCTGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR CAA 72 bp AAGGCGGACACCTCAATCATCTCTCTCTCTCTGCTTTaGAAGTCTATCTTGAGAGGCACAATAGTGCCCCCT +
Preference number: 4 (lower is better)
Translates to: KADTSIISLSLL*KSILRGTIVPP
Trigger: AGGGGGCACTATTGTGCCTCTCAAGATAGACTTCAAAAGCAGAGAGAGAGAGATGATTGAGGTGTCCGCCTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR CAA 72 bp TGGTCTTCTTCCCTGTATATGCCCACCCTCTTCTACTaGGTCACCAAGATACTTCGCCCAATATGTGAGGAG +
Preference number: 4 (lower is better)
Translates to: WSSSLYMPTLFY*VTKILRPICEE
Trigger: CTCCTCACATATTGGGCGAAGTATCTTGGTGACCAAGTAGAAGAGGGTGGGCATATACAGGGAAGAAGACCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
CDS-3UTR TCA 90 bp TCATTGACTATTTACAGATTGGGAATCCATTGTCTGCCTGGCAACTATTTGGACCGGGAGCTCTGGCCTTaGCAAGATCCAAGAGCCCAT +
Preference number: 4 (lower is better)
Translates to: SLTIYRLGIHCLPGNYLDRELWP*QDPRAH
Trigger: ATGGGCTCTTGGATCTTGTCAAGGCCAGAGCTCCCG...GTCCAAATAGTTGCCAGGCAGACAATGGATTCCCAATCTGTAAATAGTCAATGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
CDS-3UTR TCA 90 bp TCCACCTTCTTCTGGTCTTCTTCCCTGTATATGCCCACCCTCTTCTACTTGGTCTGTTACCCCTTTCGATaGAGACCCCATCATCTTCTT +
Preference number: 4 (lower is better)
Translates to: STFFWSSSLYMPTLFYLVCYPFR*RPHHLL
Trigger: AAGAAGATGATGGGGTCTTCATCGAAAGGGGTAACA...GACCAAGTAGAAGAGGGTGGGCATATACAGGGAAGAAGACCAGAAGAAGGTGGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
CDS-3UTR GCA 90 bp TGTCTCTTTAGCATTTGGGGGATTCGCTTTCAGAATCAGGAGATTCCTCCCTCTCTAGCTCCACCAGATTaGTGTCCACACCTGCCAATA +
Preference number: 4 (lower is better)
Translates to: CLFSIWGIRFQNQEIPPSLAPPD*CPHLPI
Trigger: TATTGGCAGGTGTGGACAGCAATCTGGTGGAGCTAG...AGAGGGAGGAATCTCCTGATTCTGAAAGCGAATCCCCCAAATGCTAAAGAGACA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
CDS-3UTR GCA 90 bp TATCAAGTAAGCACTCTACCAGTGAGCCACTCACTGGGGAATTCTAGGCAGGCTTTCAAGACCCTGTTCTaGTCATCTGCCACCAAGATT +
Preference number: 4 (lower is better)
Translates to: YQVSTLPVSHSLGNSRQAFKTLF*SSATKI
Trigger: AATCTTGGTGGCAGATGAGCAGAACAGGGTCTTGAA...AGCCTGCCTAGAATTCCCCAGTGAGTGGCTCACTGGTAGAGTGCTTACTTGATA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
CDS-3UTR GCA 90 bp AGATGTCCCTTCTCTATCCTTAAACTTCCATCTGGACTTTATTCCAAAGGCCCCCTGACCCTACAAAATTaGCCTGGGGGCTGGTGGTTA +
Preference number: 4 (lower is better)
Translates to: RCPFSILKLPSGLYSKGPLTLQN*PGGWWL
Trigger: TAACCACCAGCCCCCAGGGCAATTTTGTAGGGTCAG...GGGGCCTTTGGAATAAAGTCCAGATGGAAGTTTAAGGATAGAGAAGGGACATCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
CDS-3UTR CCA 90 bp ATCTGGACATTGGTGATTCCCTACATTGGTTTCTACAAACAGGGAATTCTGTCCGGCATGGCAGAGTCTTaGGTGTGTGTAACTGCTCCA +
Preference number: 4 (lower is better)
Translates to: IWTLVIPYIGFYKQGILSGMAES*VCVTAP
Trigger: TGGAGCAGTTACACACACCCAAGACTCTGCCATGCC...GGACAGAATTCCCTGTTTGTAGAAACCAATGTAGGGAATCACCAATGTCCAGAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
CDS-3UTR CCA 90 bp CTACATGTTTCTTCAGAACACATCTGTAACTTTTATCTTTGGCGTATGCCAGTGGGTCTTTGCCTTCTTTaGGAGTCAGGGGCTGGGCTC +
Preference number: 4 (lower is better)
Translates to: LHVSSEHICNFYLWRMPVGLCLL*ESGAGL
Trigger: GAGCCCAGCCCCTGACTCCCAAAGAAGGCAAAGACC...CACTGGCATACGCCAAAGATAAAAGTTACAGATGTGTTCTGAAGAAACATGTAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR CAA 72 bp ACAAGTCAAGATTTCTGCAGTTTGGCTGGCTTAAGGTaGTGGCATACTGAGTGTCAGAGCCCTCTCTACACA +
Preference number: 4 (lower is better)
Translates to: TSQDFCSLAGLR*WHTECQSPLYT
Trigger: TGTGTAGAGAGGGCTCTGACACTCAGTATGCCACAACCTTAAGCCAGCCAAACTGCAGAAATCTTGACTTGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR CAA 72 bp TCAATCATCTCTCTCTCTCTGCTTTTGAAGTCTATCTaGAGAGGCACAATAGTGCCCCCTGCTGGAGACTTC +
Preference number: 4 (lower is better)
Translates to: SIISLSLLLKSI*RGTIVPPAGDF
Trigger: GAAGTCTCCAGCAGGGGGCACTATTGTGCCTCTCAAGATAGACTTCAAAAGCAGAGAGAGAGAGATGATTGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR CAA 72 bp ATAACTGGCTACAACGTCCTCTGGAGACACCTTGTGTaGTCTTCCCAAAGTTCCACCTTCTTCTGGTCTTCT +
Preference number: 4 (lower is better)
Translates to: ITGYNVLWRHLV*SSQSSTFFWSS
Trigger: AGAAGACCAGAAGAAGGTGGAACTTTGGGAAGACAACACAAGGTGTCTCCAGAGGACGTTGTAGCCAGTTAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
CDS-3UTR GCA 90 bp TTAGCTGCAGGAATTGTTCCAAAGCAAGCAGTTTGGTTGACTGCTGGCATCTGCGACAAGATAGAGTTTTaGATTGGCAGAGAAAGCCAC +
Preference number: 4 (lower is better)
Translates to: LAAGIVPKQAVWLTAGICDKIEF*IGRESH
Trigger: GTGGCTTTCTCTGCCAATGCAAAACTCTATCTTGTC...GCAGATGCCAGCAGTCAACCAAACTGCTTGCTTTGGAACAATTCCTGCAGCTAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
CDS-3UTR CCA 90 bp ATCTGGACATTGGTGATTCCCTACATTGGTTTCTACAAACAGGGAATTCTGTCCAGCTTCCAGCAGAGTTaGGGAGGAGTCTTTGGAGTT +
Preference number: 4 (lower is better)
Translates to: IWTLVIPYIGFYKQGILSSFQQS*GGVFGV
Trigger: AACTCCAAAGACTCCTCCCCAACTCTGCTGGAAGCT...GGACAGAATTCCCTGTTTGTAGAAACCAATGTAGGGAATCACCAATGTCCAGAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
CDS-3UTR CCA 90 bp TCATTGACTATTTACAGATTGGGAATCCATTGTCTGCCTGGCAACTATTTGGACCCTACAAAATTGCCCTaGGGGCTGGTGGTTAGGAAC +
Preference number: 4 (lower is better)
Translates to: SLTIYRLGIHCLPGNYLDPTKLP*GLVVRN
Trigger: GTTCCTAACCACCAGCCCCCAGGGCAATTTTGTAGG...GTCCAAATAGTTGCCAGGCAGACAATGGATTCCCAATCTGTAAATAGTCAATGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR CAA 72 bp TTAGCTGCAGGAATTGTTCCAAAGCAAGCAGTTTGGTaGACTGCTGGCATCTGCTGTGTGCTCAAAGCTATT +
Preference number: 4 (lower is better)
Translates to: LAAGIVPKQAVW*TAGICCVLKAI
Trigger: AATAGCTTTGAGCACACAGCAGATGCCAGCAGTCAACCAAACTGCTTGCTTTGGAACAATTCCTGCAGCTAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
CDS-3UTR CCA 90 bp TGTCTCTTTAGCATTTGGGGGATTCGCTTTCAGAATCAGGAGATTCCTCCCTCTGATAGAGTTTTGCATTaGCAGAGAAAGCCACTGCAT +
Preference number: 4 (lower is better)
Translates to: CLFSIWGIRFQNQEIPPSDRVLH*QRKPLH
Trigger: ATGCAGTGGCTTTCTCTGCCAATGCAAAACTCTATC...AGAGGGAGGAATCTCCTGATTCTGAAAGCGAATCCCCCAAATGCTAAAGAGACA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR CAA 72 bp CTTCTATCCCTGTACATCACAAAAGGAACAAGCATTTaGCTAGTTGGGAAAATGCCCTTGGCCAACTCATCC +
Preference number: 4 (lower is better)
Translates to: LLSLYITKGTSI*LVGKMPLANSS
Trigger: GGATGAGTTGGCCAAGGGCATTTTCCCAACTAGCAAAATGCTTGTTCCTTTTGTGATGTACAGGGATAGAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR CAA 72 bp CCCATTTGGTTCTTTATCCCTACTACTTGGTCTGGATaGGTCAGGAGATTCAAGACTTTCGAGAATGCTCAG +
Preference number: 4 (lower is better)
Translates to: PIWFFIPTTWSG*VRRFKTFENAQ
Trigger: CTGAGCATTCTCGAAAGTCTTGAATCTCCTGACCAATCCAGACCAAGTAGTAGGGATAAAGAACCAAATGGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
CDS-3UTR GCA 90 bp TTAAACTTCCATCTGGACTTTATTCCAAAGGCCCCTGTGTCTCACACACACACTAAACAGACTTGCCTCTaGCTTTGCACTTCTTCTTCT +
Preference number: 4 (lower is better)
Translates to: LNFHLDFIPKAPVSHTHTKQTCL*LCTSSS
Trigger: AGAAGAAGAAGTGCAAAGGCAGAGGCAAGTCTGTTT...AGTGTGTGTGTGAGACACAGGGGCCTTTGGAATAAAGTCCAGATGGAAGTTTAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR CAA 72 bp AAACAAATCATTGACTATTTACAGATTGGGAATCCATaGTCTGCCTGGCAACTATTTGGACACAGTCCCACC +
Preference number: 4 (lower is better)
Translates to: KQIIDYLQIGNP*SAWQLFGHSPT
Trigger: GGTGGGACTGTGTCCAAATAGTTGCCAGGCAGACAATGGATTCCCAATCTGTAAATAGTCAATGATTTGTTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
CDS-3UTR TCA 90 bp CTACATGTTTCTTCAGAACACATCTGTAACTTTTATCTTTGGCGTATGCCAGTGTATTCCCAGATCACCTaGCCTAACCCATCACAGAAA +
Preference number: 4 (lower is better)
Translates to: LHVSSEHICNFYLWRMPVYSQIT*PNPSQK
Trigger: TTTCTGTGATGGGTTAGGTCAGGTGATCTGGGAATA...CACTGGCATACGCCAAAGATAAAAGTTACAGATGTGTTCTGAAGAAACATGTAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
CDS-3UTR GCA 90 bp TATGTTATCTCCCTTAGGATTCTCTTTCACCTGCTCCAAGGTTTTGTTTTGTTTAAAACCACGCTATTCTaGTGCCAATCTGACCCTACA +
Preference number: 4 (lower is better)
Translates to: YVISLRILFHLLQGFVLFKTTLF*CQSDPT
Trigger: TGTAGGGTCAGATTGGCAGCAGAATAGCGTGGTTTT...AAACAAAACAAAACCTTGGAGCAGGTGAAAGAGAATCCTAAGGGAGATAACATA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR CAA 72 bp TGTAACCTCCGAAACAAATCATTGACTATTTACAGATaGGGAATCCATTGTCTGCCTGGCAACTATTTGGAC +
Preference number: 4 (lower is better)
Translates to: CNLRNKSLTIYR*GIHCLPGNYLD
Trigger: GTCCAAATAGTTGCCAGGCAGACAATGGATTCCCAATCTGTAAATAGTCAATGATTTGTTTCGGAGGTTACA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR CAA 72 bp TTCTTTCCAGCATGCCTAACATATCTTGACGTATACTaGGTCTTCCTTTGCTTGGAGGATGACTTATGTTAT +
Preference number: 4 (lower is better)
Translates to: FFPACLTYLDVY*VFLCLEDDLCY
Trigger: ATAACATAAGTCATCCTCCAAGCAAAGGAAGACCAAGTATACGTCAAGATATGTTAGGCATGCTGGAAAGAA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
3UTR CAA 72 bp AATAACTCAAAAAGATGTAACCTCCGAAACAAATCATaGACTATTTACAGATTGGGAATCCATTGTCTGCCT +
Preference number: 4 (lower is better)
Translates to: NNSKRCNLRNKS*TIYRLGIHCLP
Trigger: AGGCAGACAATGGATTCCCAATCTGTAAATAGTCAATGATTTGTTTCGGAGGTTACATCTTTTTGAGTTATT
35% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
CDS CCA 90 bp CCTCGAGCCCGGGATGGAGCTCTAGCTGGGGCAGCACACAGCGGGTaGGCCCAGACGTCCAGGGAGCATCCTGAAGCTGGCGCAGGCGCT +
Preference number: 5 (lower is better)
Translates to: PRARDGALAGAAHSG*AQTSREHPEAGAGA
Trigger: AGCGCCTGCGCCAGCTTCAGGATGCTCCCTGGACGTCTGGGCCCACCCGCTGTGTGCTGCCCCAGCTAGAGCTCCATCCCGGGCTCGAGG
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
CDS TCA 90 bp TGGGGCAGCACACAGCGGGTGGGCCCAGACGTCCAGGGAGCATCCTaGAGCTGGCGCAGGCGCTGTGTGATTGCTCCCTCCAGCGAAAGG +
Preference number: 5 (lower is better)
Translates to: WGSTQRVGPDVQGAS*SWRRRCVIAPSSER
Trigger: CCTTTCGCTGGAGGGAGCAATCACACAGCGCCTGCGCCAGCTTCAGGATGCTCCCTGGACGTCTGGGCCCACCCGCTGTGTGCTGCCCCA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
CDS CCA 90 bp AGCAGGTGGCAGTTCTTGTCCTCGAGCCCGGGATGGAGCTCTAGCTaGGGCAGCACACAGCGGGTGGGCCCAGACGTCCAGGGAGCATCC +
Preference number: 5 (lower is better)
Translates to: SRWQFLSSSPGWSSS*GSTQRVGPDVQGAS
Trigger: GGATGCTCCCTGGACGTCTGGGCCCACCCGCTGTGTGCTGCCCCAGCTAGAGCTCCATCCCGGGCTCGAGGACAAGAACTGCCACCTGCT
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
CDS GCA 90 bp CGGCACAGTCCAGGCACCTGGCTGTGGCGGGTCCCCCAGAGCTCTTaGCTCCCACCAGAGGGCACAGAGCGCAAGTTGGCTTCCCTGAAT +
Preference number: 5 (lower is better)
Translates to: RHSPGTWLWRVPQSS*LPPEGTERKLASLN
Trigger: ATTCAGGGAAGCCAACTTGCGCTCTGTGCCCTCTGGTGGGAGGCAAGAGCTCTGGGGGACCCGCCACAGCCAGGTGCCTGGACTGTGCCG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000054384.6
ENSMUST00000152207.2
CDS CCA 90 bp TGCTTATGGGTCTGCCGGGAGCAGCGATGCCCATCGGCACAGGCCTaGCATAAGTCGTCGGCACAGTCCAGGCACCTGGCTGTGGCGGGT +
Preference number: 5 (lower is better)
Translates to: CLWVCREQRCPSAQA*HKSSAQSRHLAVAG
Trigger: ACCCGCCACAGCCAGGTGCCTGGACTGTGCCGACGACTTATGCCAGGCCTGTGCCGATGGGCATCGCTGCTCCCGGCAGACCCATAAGCA
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054384.6
ENSMUST00000152207.2
CDS TCA 90 bp TGGGCCAGCAGGGACTTGAGGATTCGTTCAGCTGCCTCCTCCACCTaGGTCCCCACACTGGCTGCCTGCTCCCGAAGCAAGGCCAGGGCT +
Preference number: 5 (lower is better)
Translates to: WASRDLRIRSAASST*VPTLAACSRSKARA
Trigger: AGCCCTGGCCTTGCTTCGGGAGCAGGCAGCCAGTGTGGGGACTCAGGTGGAGGAGGCAGCTGAACGAATCCTCAAGTCCCTGCTGGCCCA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
CDS CCA 90 bp AAGATGAGTCGGAGCAGGTGGCAGTTCTTGTCCTCGAGCCCGGGATaGAGCTCTAGCTGGGGCAGCACACAGCGGGTGGGCCCAGACGTC +
Preference number: 5 (lower is better)
Translates to: KMSRSRWQFLSSSPG*SSSWGSTQRVGPDV
Trigger: GACGTCTGGGCCCACCCGCTGTGTGCTGCCCCAGCTAGAGCTCCATCCCGGGCTCGAGGACAAGAACTGCCACCTGCTCCGACTCATCTT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
CDS TCA 90 bp GCCCAGACGTCCAGGGAGCATCCTGAAGCTGGCGCAGGCGCTGTGTaGTTGCTCCCTCCAGCGAAAGGATCTCGGCCTCTAGACCCAAGC +
Preference number: 5 (lower is better)
Translates to: AQTSREHPEAGAGAV*LLPPAKGSRPLDPS
Trigger: GCTTGGGTCTAGAGGCCGAGATCCTTTCGCTGGAGGGAGCAATCACACAGCGCCTGCGCCAGCTTCAGGATGCTCCCTGGACGTCTGGGC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
CDS CCA 90 bp AGCACTCGACGGGCAAAGGCAGCCGCCGCCTTGGCCACCTGCTCCTaGCGCTCTATTTTGGTCAACCTCTCCCTGGTAGCCTCCTCAGCA +
Preference number: 5 (lower is better)
Translates to: STRRAKAAAALATCS*RSILVNLSLVASSA
Trigger: TGCTGAGGAGGCTACCAGGGAGAGGTTGACCAAAATAGAGCGCCAGGAGCAGGTGGCCAAGGCGGCGGCTGCCTTTGCCCGTCGAGTGCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
CDS CCA 90 bp TACCTCCACATGGCCTGCCACACTGACAGCTACTCGGTCTCCACATaGCATTGCGGCCACGGCGTGGCTGGACTGGGTGAGGCTCAGGGA +
Preference number: 5 (lower is better)
Translates to: YLHMACHTDSYSVST*HCGHGVAGLGEAQG
Trigger: TCCCTGAGCCTCACCCAGTCCAGCCACGCCGTGGCCGCAATGCCATGTGGAGACCGAGTAGCTGTCAGTGTGGCAGGCCATGTGGAGGTA
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
CDS TCA 90 bp CCCGGAGTTGTCCCAGCACTTCCTGCTTCTGGGCCAGCAGGGACTTaGGGATTCGTTCAGCTGCCTCCTCCACCTGAGTCCCCACACTGG +
Preference number: 5 (lower is better)
Translates to: PGVVPALPASGPAGT*GFVQLPPPPESPHW
Trigger: CCAGTGTGGGGACTCAGGTGGAGGAGGCAGCTGAACGAATCCTCAAGTCCCTGCTGGCCCAGAAGCAGGAAGTGCTGGGACAACTCCGGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
CDS GCA 90 bp ACCAAGTCAACGACACGGTGCTTATGGGTCTGCCGGGAGCAGCGATaGCCATCGGCACAGGCCTGGCATAAGTCGTCGGCACAGTCCAGG +
Preference number: 5 (lower is better)
Translates to: TKSTTRCLWVCREQR*PSAQAWHKSSAQSR
Trigger: CCTGGACTGTGCCGACGACTTATGCCAGGCCTGTGCCGATGGGCATCGCTGCTCCCGGCAGACCCATAAGCACCGTGTCGTTGACTTGGT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054384.6
ENSMUST00000152207.2
CDS CCA 90 bp CAGGCCGAGGGAGGAGGCCGGAACCTTCTAGGTTTGGCCTCAGGATaGGGCTGGGCTCCCGAGAAACAGACTTGCCTCTGCCTTTGCACT +
Preference number: 5 (lower is better)
Translates to: QAEGGGRNLLGLASG*GWAPEKQTCLCLCT
Trigger: AGTGCAAAGGCAGAGGCAAGTCTGTTTCTCGGGAGCCCAGCCCCATCCTGAGGCCAAACCTAGAAGGTTCCGGCCTCCTCCCTCGGCCTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
CDS GCA 90 bp TTGCATTGGCAGAGAAAGCCACTGCATTCTGCAGGGCAGCCACGCTaGACGGGGAACAGCCCTCGGGGACCTGCACTGTGCCTTTGTAGT +
Preference number: 5 (lower is better)
Translates to: LHWQRKPLHSAGQPR*TGNSPRGPALCLCS
Trigger: ACTACAAAGGCACAGTGCAGGTCCCCGAGGGCTGTTCCCCGTGCAGCGTGGCTGCCCTGCAGAATGCAGTGGCTTTCTCTGCCAATGCAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
CDS GCA 90 bp GCGGGTAGCCAGGCTGCCATCTTTCTTGTATACCTCCACATGGCCTaGCACACTGACAGCTACTCGGTCTCCACATGGCATTGCGGCCAC +
Preference number: 5 (lower is better)
Translates to: AGSQAAIFLVYLHMA*HTDSYSVSTWHCGH
Trigger: GTGGCCGCAATGCCATGTGGAGACCGAGTAGCTGTCAGTGTGGCAGGCCATGTGGAGGTATACAAGAAAGATGGCAGCCTGGCTACCCGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
CDS CCA 90 bp TCCTTCGGGGATTGTTTAGGCTCCTCAAAGATGAGTCGGAGCAGGTaGCAGTTCTTGTCCTCGAGCCCGGGATGGAGCTCTAGCTGGGGC +
Preference number: 5 (lower is better)
Translates to: SFGDCLGSSKMSRSR*QFLSSSPGWSSSWG
Trigger: GCCCCAGCTAGAGCTCCATCCCGGGCTCGAGGACAAGAACTGCCACCTGCTCCGACTCATCTTTGAGGAGCCTAAACAATCCCCGAAGGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
CDS CCA 90 bp GAGGGAGGAGGCCGGAACCTTCTAGGTTTGGCCTCAGGATGGGGCTaGGCTCCCGAGAAACAGACTTGCCTCTGCCTTTGCACTTCTTCT +
Preference number: 5 (lower is better)
Translates to: EGGGRNLLGLASGWG*APEKQTCLCLCTSS
Trigger: AGAAGAAGTGCAAAGGCAGAGGCAAGTCTGTTTCTCGGGAGCCCAGCCCCATCCTGAGGCCAAACCTAGAAGGTTCCGGCCTCCTCCCTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
CDS GCA 90 bp GGGCTTCCTTTTCTGCCACCCGAGTGGCTTCTAGCTCCACCAGATTaGTGTCCACACCTGCCAATAACTCCTCAAGGCCTGGCTTCCTGG +
Preference number: 5 (lower is better)
Translates to: GLPFLPPEWLLAPPD*CPHLPITPQGLASW
Trigger: CCAGGAAGCCAGGCCTTGAGGAGTTATTGGCAGGTGTGGACAGCAATCTGGTGGAGCTAGAAGCCACTCGGGTGGCAGAAAAGGAAGCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
CDS GCA 90 bp GTCAGGACTGACAAGATAGAGTTTTGCATTGGCAGAGAAAGCCACTaGATTCTGCAGGGCAGCCACGCTGCACGGGGAACAGCCCTCGGG +
Preference number: 5 (lower is better)
Translates to: VRTDKIEFCIGRESH*ILQGSHAARGTALG
Trigger: CCCGAGGGCTGTTCCCCGTGCAGCGTGGCTGCCCTGCAGAATGCAGTGGCTTTCTCTGCCAATGCAAAACTCTATCTTGTCAGTCCTGAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
CDS CCA 90 bp CCTGCTCCCGAAGCAAGGCCAGGGCTTCCTTTTCTGCCACCCGAGTaGCTTCTAGCTCCACCAGATTGCTGTCCACACCTGCCAATAACT +
Preference number: 5 (lower is better)
Translates to: PAPEARPGLPFLPPE*LLAPPDCCPHLPIT
Trigger: AGTTATTGGCAGGTGTGGACAGCAATCTGGTGGAGCTAGAAGCCACTCGGGTGGCAGAAAAGGAAGCCCTGGCCTTGCTTCGGGAGCAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
CDS-3UTR CAA 90 bp GCCAAAGAGAGATGGCCAGGCACCTTGGCCCCTGCCACCCGTCAATCAAATTCCCAACTGAGAACAAGGTaGACAGAGGAAGCAGAGGGC +
Preference number: 5 (lower is better)
Translates to: AKERWPGTLAPATRQSNSQLRTR*TEEAEG
Trigger: GCCCTCTGCTTCCTCTGTCAACCTTGTTCTCAGTTG...GGAATTTGATTGACGGGTGGCAGGGGCCAAGGTGCCTGGCCATCTCTCTTTGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
CDS-3UTR CAA 90 bp AAGAGAGATGGCCAGGCACCTTGGCCCCTGCCACCCGTCAATCAAATTCCATCTATCGTCCCCTTGGCCTaGAGCTTCATCCCCTCCTTG +
Preference number: 5 (lower is better)
Translates to: KRDGQAPWPLPPVNQIPSIVPLA*SFIPSL
Trigger: CAAGGAGGGGATGAAGCTCAAGGCCAAGGGGACGAT...AGATGGAATTTGATTGACGGGTGGCAGGGGCCAAGGTGCCTGGCCATCTCTCTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
CDS-3UTR CAA 90 bp AAGAGAGATGGCCAGGCACCTTGGCCCCTGCCACCCGTCAATCAAATTCCATCTGAGCTTCCAGCAGAGTaGGGGAGGAGTCTTTGGAGT +
Preference number: 5 (lower is better)
Translates to: KRDGQAPWPLPPVNQIPSELPAE*GRSLWS
Trigger: ACTCCAAAGACTCCTCCCCAACTCTGCTGGAAGCTC...AGATGGAATTTGATTGACGGGTGGCAGGGGCCAAGGTGCCTGGCCATCTCTCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
CDS-3UTR CAA 90 bp TATCAAGTAAGCACTCTACCAGTGAGCCACTCACTGGGGAATTCTAGGCAGGCTAGCAGGTGGCAGTTCTaGTCCTCGAGCCCGGGATGG +
Preference number: 5 (lower is better)
Translates to: YQVSTLPVSHSLGNSRQASRWQF*SSSPGW
Trigger: CCATCCCGGGCTCGAGGACAAGAACTGCCACCTGCT...AGCCTGCCTAGAATTCCCCAGTGAGTGGCTCACTGGTAGAGTGCTTACTTGATA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
CDS CCA 90 bp ATAAAGCGGGTAGCCAGGCTGCCATCTTTCTTGTATACCTCCACATaGCCTGCCACACTGACAGCTACTCGGTCTCCACATGGCATTGCG +
Preference number: 5 (lower is better)
Translates to: IKRVARLPSFLYTST*PATLTATRSPHGIA
Trigger: CGCAATGCCATGTGGAGACCGAGTAGCTGTCAGTGTGGCAGGCCATGTGGAGGTATACAAGAAAGATGGCAGCCTGGCTACCCGCTTTAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
CDS TCA 90 bp GTCAGGAAACCTGACCCTAAAGACATGGATGGTCCCATTGCTAAGTaGCACCACCAAGTACTTGCCGTCTACCATGGTGGTTACCCGGGG +
Preference number: 5 (lower is better)
Translates to: VRKPDPKDMDGPIAK*HHQVLAVYHGGYPG
Trigger: CCCCGGGTAACCACCATGGTAGACGGCAAGTACTTGGTGGTGTCACTTAGCAATGGGACCATCCATGTCTTTAGGGTCAGGTTTCCTGAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
CDS-3UTR CAA 90 bp TTAGCTGCAGGAATTGTTCCAAAGCAAGCAGTTTGGTTGACTGCTGGCATCTGCAGCTTCATCCCCTCCTaGGGTACCAGCCCCACCCTT +
Preference number: 5 (lower is better)
Translates to: LAAGIVPKQAVWLTAGICSFIPS*GTSPTL
Trigger: AAGGGTGGGGCTGGTACCCAAGGAGGGGATGAAGCT...GCAGATGCCAGCAGTCAACCAAACTGCTTGCTTTGGAACAATTCCTGCAGCTAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
CDS-3UTR CAA 90 bp TTAGCTGCAGGAATTGTTCCAAAGCAAGCAGTTTGGTTGACTGCTGGCATCTGCACCACCGATGTCCAGTaGTGCCAGACAGTCCTGGCA +
Preference number: 5 (lower is better)
Translates to: LAAGIVPKQAVWLTAGICTTDVQ*CQTVLA
Trigger: TGCCAGGACTGTCTGGCACAACTGGACATCGGTGGT...GCAGATGCCAGCAGTCAACCAAACTGCTTGCTTTGGAACAATTCCTGCAGCTAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
CDS GCA 90 bp GTGTGTGTAACTGCTCCAGGCAGATTTTACAGGCTAGGAAATCGCTaGTCAGAGCTTCCAGCAGAGTTGGGGAGGAGTCTTTGGAGTTCA +
Preference number: 5 (lower is better)
Translates to: VCVTAPGRFYRLGNR*SELPAELGRSLWSS
Trigger: TGAACTCCAAAGACTCCTCCCCAACTCTGCTGGAAGCTCTGAGCAGCGATTTCCTAGCCTGTAAAATCTGCCTGGAGCAGTTACACACAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000054384.6
ENSMUST00000152207.2
CDS CCA 90 bp CCAGGCCATGGTATGCTGTTAGGAAGTCACCAAGAAGTGACCCCTTaGGATCCAGTATCACCACCTTGTTTACCTCTCGAAGGGTCAGAA +
Preference number: 5 (lower is better)
Translates to: PGHGMLLGSHQEVTP*DPVSPPCLPLEGSE
Trigger: TTCTGACCCTTCGAGAGGTAAACAAGGTGGTGATACTGGATCCCAAGGGGTCACTTCTTGGTGACTTCCTAACAGCATACCATGGCCTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
CDS-3UTR CAA 90 bp CAGGTGATGCCATTGGCCAACACTTCATTCACAATGTCCGTCTGGCATCTCGGATCCAGTATCACCACCTaGTTTACCTCTCGAAGGGTC +
Preference number: 5 (lower is better)
Translates to: QVMPLANTSFTMSVWHLGSSITT*FTSRRV
Trigger: GACCCTTCGAGAGGTAAACAAGGTGGTGATACTGGA...TCCGAGATGCCAGACGGACATTGTGAATGAAGTGTTGGCCAATGGCATCACCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
CDS CCA 90 bp GTGCCAGACAGTCCTGGCAATAGGTATGTAGGCATGGCAGAGTCTTaGGTGTGTGTAACTGCTCCAGGCAGATTTTACAGGCTAGGAAAT +
Preference number: 5 (lower is better)
Translates to: VPDSPGNRYVGMAES*VCVTAPGRFYRLGN
Trigger: ATTTCCTAGCCTGTAAAATCTGCCTGGAGCAGTTACACACACCCAAGACTCTGCCATGCCTACATACCTATTGCCAGGACTGTCTGGCAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000054384.6
ENSMUST00000152207.2
CDS-3UTR CAA 90 bp CCTACCTTAAATGTCTCTTCAGCCTCATTTCTCCATAGCCCCCTGGCTAAACACTCTAGCTCCACCAGATaGCTGTCCACACCTGCCAAT +
Preference number: 5 (lower is better)
Translates to: PTLNVSSASFLHSPLAKHSSSTR*LSTPAN
Trigger: ATTGGCAGGTGTGGACAGCAATCTGGTGGAGCTAGA...GTGTTTAGCCAGGGGGCTATGGAGAAATGAGGCTGAAGAGACATTTAAGGTAGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
CDS-3UTR CAA 90 bp CCTACCTTAAATGTCTCTTCAGCCTCATTTCTCCATAGCCCCCTGGCTAAACACAGGCTGCCATCTTTCTaGTATACCTCCACATGGCCT +
Preference number: 5 (lower is better)
Translates to: PTLNVSSASFLHSPLAKHRLPSF*YTSTWP
Trigger: AGGCCATGTGGAGGTATACAAGAAAGATGGCAGCCT...GTGTTTAGCCAGGGGGCTATGGAGAAATGAGGCTGAAGAGACATTTAAGGTAGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
CDS-3UTR CAA 90 bp TTAAACTTCCATCTGGACTTTATTCCAAAGGCCCCTGTGTCTCACACACACACTTCTGACCCTACAAAATaGCCCTGGGGGCTGGTGGTT +
Preference number: 5 (lower is better)
Translates to: LNFHLDFIPKAPVSHTHTSDPTK*PWGLVV
Trigger: AACCACCAGCCCCCAGGGCAATTTTGTAGGGTCAGA...AGTGTGTGTGTGAGACACAGGGGCCTTTGGAATAAAGTCCAGATGGAAGTTTAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
CDS-3UTR CAA 90 bp ATCTGGACATTGGTGATTCCCTACATTGGTTTCTACAAACAGGGAATTCTGTCCAGGCATGGCAGAGTCTaGGGTGTGTGTAACTGCTCC +
Preference number: 5 (lower is better)
Translates to: IWTLVIPYIGFYKQGILSRHGRV*GVCNCS
Trigger: GGAGCAGTTACACACACCCAAGACTCTGCCATGCCT...GGACAGAATTCCCTGTTTGTAGAAACCAATGTAGGGAATCACCAATGTCCAGAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
CDS-3UTR CAA 90 bp AGATGTCCCTTCTCTATCCTTAAACTTCCATCTGGACTTTATTCCAAAGGCCCCTCCCGAGAAACAGACTaGCCTCTGCCTTTGCACTTC +
Preference number: 5 (lower is better)
Translates to: RCPFSILKLPSGLYSKGPSRETD*PLPLHF
Trigger: GAAGTGCAAAGGCAGAGGCAAGTCTGTTTCTCGGGA...GGGGCCTTTGGAATAAAGTCCAGATGGAAGTTTAAGGATAGAGAAGGGACATCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
CDS-3UTR CAA 90 bp AGATGTCCCTTCTCTATCCTTAAACTTCCATCTGGACTTTATTCCAAAGGCCCCGACACCACCAAGTACTaGCCGTCTACCATGGTGGTT +
Preference number: 5 (lower is better)
Translates to: RCPFSILKLPSGLYSKGPDTTKY*PSTMVV
Trigger: AACCACCATGGTAGACGGCAAGTACTTGGTGGTGTC...GGGGCCTTTGGAATAAAGTCCAGATGGAAGTTTAAGGATAGAGAAGGGACATCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
CDS-3UTR CAA 90 bp TATCAAGTAAGCACTCTACCAGTGAGCCACTCACTGGGGAATTCTAGGCAGGCTAGATCCAAGAGCCCATaGACAAAGAAGTTGGTCTTA +
Preference number: 5 (lower is better)
Translates to: YQVSTLPVSHSLGNSRQARSKSP*TKKLVL
Trigger: TAAGACCAACTTCTTTGTCAATGGGCTCTTGGATCT...AGCCTGCCTAGAATTCCCCAGTGAGTGGCTCACTGGTAGAGTGCTTACTTGATA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
CDS-3UTR CAA 90 bp CTACATGTTTCTTCAGAACACATCTGTAACTTTTATCTTTGGCGTATGCCAGTGTGGTCTTTGCCTTCTTaGGGAGTCAGGGGCTGGGCT +
Preference number: 5 (lower is better)
Translates to: LHVSSEHICNFYLWRMPVWSLPS*GVRGWA
Trigger: AGCCCAGCCCCTGACTCCCAAAGAAGGCAAAGACCA...CACTGGCATACGCCAAAGATAAAAGTTACAGATGTGTTCTGAAGAAACATGTAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
CDS-3UTR CAA 90 bp TGTCTCTTTAGCATTTGGGGGATTCGCTTTCAGAATCAGGAGATTCCTCCCTCTGACTTGCCTCTGCCTTaGCACTTCTTCTTCTTGTTA +
Preference number: 5 (lower is better)
Translates to: CLFSIWGIRFQNQEIPPSDLPLP*HFFFLL
Trigger: TAACAAGAAGAAGAAGTGCAAAGGCAGAGGCAAGTC...AGAGGGAGGAATCTCCTGATTCTGAAAGCGAATCCCCCAAATGCTAAAGAGACA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
CDS-3UTR CAA 90 bp TCATTGACTATTTACAGATTGGGAATCCATTGTCTGCCTGGCAACTATTTGGACGCTGTCCTTCGGGGATaGTTTAGGCTCCTCAAAGAT +
Preference number: 5 (lower is better)
Translates to: SLTIYRLGIHCLPGNYLDAVLRG*FRLLKD
Trigger: ATCTTTGAGGAGCCTAAACAATCCCCGAAGGACAGC...GTCCAAATAGTTGCCAGGCAGACAATGGATTCCCAATCTGTAAATAGTCAATGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
CDS-3UTR CAA 90 bp CTACATGTTTCTTCAGAACACATCTGTAACTTTTATCTTTGGCGTATGCCAGTGACATGGATGGTCCCATaGCTAAGTGACACCACCAAG +
Preference number: 5 (lower is better)
Translates to: LHVSSEHICNFYLWRMPVTWMVP*LSDTTK
Trigger: CTTGGTGGTGTCACTTAGCAATGGGACCATCCATGT...CACTGGCATACGCCAAAGATAAAAGTTACAGATGTGTTCTGAAGAAACATGTAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
CDS-3UTR CAA 90 bp TCATTGACTATTTACAGATTGGGAATCCATTGTCTGCCTGGCAACTATTTGGACTTGCACTTCTTCTTCTaGTTAGGCCTGTTACCCCTT +
Preference number: 5 (lower is better)
Translates to: SLTIYRLGIHCLPGNYLDLHFFF*LGLLPL
Trigger: AAGGGGTAACAGGCCTAACAAGAAGAAGAAGTGCAA...GTCCAAATAGTTGCCAGGCAGACAATGGATTCCCAATCTGTAAATAGTCAATGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
CDS GCA 72 bp CCAGGCACCTGGCTGTGGCGGGTCCCCCAGAGCTCTTaGCTCCCACCAGAGGGCACAGAGCGCAAGTTGGCT +
Preference number: 6 (lower is better)
Translates to: PGTWLWRVPQSS*LPPEGTERKLA
Trigger: AGCCAACTTGCGCTCTGTGCCCTCTGGTGGGAGGCAAGAGCTCTGGGGGACCCGCCACAGCCAGGTGCCTGG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000054384.6
ENSMUST00000152207.2
CDS CCA 72 bp CGGAGCAGGTGGCAGTTCTTGTCCTCGAGCCCGGGATaGAGCTCTAGCTGGGGCAGCACACAGCGGGTGGGC +
Preference number: 6 (lower is better)
Translates to: RSRWQFLSSSPG*SSSWGSTQRVG
Trigger: GCCCACCCGCTGTGTGCTGCCCCAGCTAGAGCTCCATCCCGGGCTCGAGGACAAGAACTGCCACCTGCTCCG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
CDS CCA 72 bp GCTACTCGGTCTCCACATGGCATTGCGGCCACGGCGTaGCTGGACTGGGTGAGGCTCAGGGACCTGCGCCAC +
Preference number: 6 (lower is better)
Translates to: ATRSPHGIAATA*LDWVRLRDLRH
Trigger: GTGGCGCAGGTCCCTGAGCCTCACCCAGTCCAGCCACGCCGTGGCCGCAATGCCATGTGGAGACCGAGTAGC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
CDS TCA 72 bp ACACAGCGGGTGGGCCCAGACGTCCAGGGAGCATCCTaGAGCTGGCGCAGGCGCTGTGTGATTGCTCCCTCC +
Preference number: 6 (lower is better)
Translates to: TQRVGPDVQGAS*SWRRRCVIAPS
Trigger: GGAGGGAGCAATCACACAGCGCCTGCGCCAGCTTCAGGATGCTCCCTGGACGTCTGGGCCCACCCGCTGTGT
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
CDS CCA 72 bp GTCTGCCGGGAGCAGCGATGCCCATCGGCACAGGCCTaGCATAAGTCGTCGGCACAGTCCAGGCACCTGGCT +
Preference number: 6 (lower is better)
Translates to: VCREQRCPSAQA*HKSSAQSRHLA
Trigger: AGCCAGGTGCCTGGACTGTGCCGACGACTTATGCCAGGCCTGTGCCGATGGGCATCGCTGCTCCCGGCAGAC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054384.6
ENSMUST00000152207.2
CDS CCA 72 bp CAGTTCTTGTCCTCGAGCCCGGGATGGAGCTCTAGCTaGGGCAGCACACAGCGGGTGGGCCCAGACGTCCAG +
Preference number: 6 (lower is better)
Translates to: QFLSSSPGWSSS*GSTQRVGPDVQ
Trigger: CTGGACGTCTGGGCCCACCCGCTGTGTGCTGCCCCAGCTAGAGCTCCATCCCGGGCTCGAGGACAAGAACTG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
CDS CAA 90 bp TCGGCACAGTCCAGGCACCTGGCTGTGGCGGGTCCCCCAGAGCTCTaGCCTCCCACCAGAGGGCACAGAGCGCAAGTTGGCTTCCCTGAA +
Preference number: 6 (lower is better)
Translates to: SAQSRHLAVAGPPEL*PPTRGHRAQVGFPE
Trigger: TTCAGGGAAGCCAACTTGCGCTCTGTGCCCTCTGGTGGGAGGCAAGAGCTCTGGGGGACCCGCCACAGCCAGGTGCCTGGACTGTGCCGA
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000054384.6
ENSMUST00000152207.2
CDS GCA 72 bp CAGAGAAAGCCACTGCATTCTGCAGGGCAGCCACGCTaGACGGGGAACAGCCCTCGGGGACCTGCACTGTGC +
Preference number: 6 (lower is better)
Translates to: QRKPLHSAGQPR*TGNSPRGPALC
Trigger: GCACAGTGCAGGTCCCCGAGGGCTGTTCCCCGTGCAGCGTGGCTGCCCTGCAGAATGCAGTGGCTTTCTCTG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
CDS CAA 72 bp GCCGCCGCCTTGGCCACCTGCTCCTGGCGCTCTATTTaGGTCAACCTCTCCCTGGTAGCCTCCTCAGCAGCC +
Preference number: 6 (lower is better)
Translates to: AAALATCSWRSI*VNLSLVASSAA
Trigger: GGCTGCTGAGGAGGCTACCAGGGAGAGGTTGACCAAAATAGAGCGCCAGGAGCAGGTGGCCAAGGCGGCGGC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
CDS CAA 72 bp GTTAGGAACACCAGTGCCCGCTGGCCCCGGCTAGCCTaGCCTCCAGGGATAAAGCGGGTAGCCAGGCTGCCA +
Preference number: 6 (lower is better)
Translates to: VRNTSARWPRLA*PPGIKRVARLP
Trigger: TGGCAGCCTGGCTACCCGCTTTATCCCTGGAGGCAAGGCTAGCCGGGGCCAGCGGGCACTGGTGTTCCTAAC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
CDS GCA 72 bp ACGACACGGTGCTTATGGGTCTGCCGGGAGCAGCGATaGCCATCGGCACAGGCCTGGCATAAGTCGTCGGCA +
Preference number: 6 (lower is better)
Translates to: TTRCLWVCREQR*PSAQAWHKSSA
Trigger: TGCCGACGACTTATGCCAGGCCTGTGCCGATGGGCATCGCTGCTCCCGGCAGACCCATAAGCACCGTGTCGT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054384.6
ENSMUST00000152207.2
CDS GCA 72 bp ACTCGACGGGCAAAGGCAGCCGCCGCCTTGGCCACCTaGTCCTGGCGCTCTATTTTGGTCAACCTCTCCCTG +
Preference number: 6 (lower is better)
Translates to: TRRAKAAAALAT*SWRSILVNLSL
Trigger: CAGGGAGAGGTTGACCAAAATAGAGCGCCAGGAGCAGGTGGCCAAGGCGGCGGCTGCCTTTGCCCGTCGAGT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
CDS GCA 72 bp TGCCACACTGACAGCTACTCGGTCTCCACATGGCATTaGGGCCACGGCGTGGCTGGACTGGGTGAGGCTCAG +
Preference number: 6 (lower is better)
Translates to: CHTDSYSVSTWH*GHGVAGLGEAQ
Trigger: CTGAGCCTCACCCAGTCCAGCCACGCCGTGGCCGCAATGCCATGTGGAGACCGAGTAGCTGTCAGTGTGGCA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
CDS CCA 72 bp TTCGTTCAGCTGCCTCCTCCACCTGAGTCCCCACACTaGCTGCCTGCTCCCGAAGCAAGGCCAGGGCTTCCT +
Preference number: 6 (lower is better)
Translates to: FVQLPPPPESPH*LPAPEARPGLP
Trigger: AGGAAGCCCTGGCCTTGCTTCGGGAGCAGGCAGCCAGTGTGGGGACTCAGGTGGAGGAGGCAGCTGAACGAA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
CDS CCA 72 bp ATGGCCTGCCACACTGACAGCTACTCGGTCTCCACATaGCATTGCGGCCACGGCGTGGCTGGACTGGGTGAG +
Preference number: 6 (lower is better)
Translates to: MACHTDSYSVST*HCGHGVAGLGE
Trigger: CTCACCCAGTCCAGCCACGCCGTGGCCGCAATGCCATGTGGAGACCGAGTAGCTGTCAGTGTGGCAGGCCAT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
CDS CAA 90 bp GGGCTGGTGGTTAGGAACACCAGTGCCCGCTGGCCCCGGCTAGCCTaGCCTCCAGGGATAAAGCGGGTAGCCAGGCTGCCATCTTTCTTG +
Preference number: 6 (lower is better)
Translates to: GLVVRNTSARWPRLA*PPGIKRVARLPSFL
Trigger: CAAGAAAGATGGCAGCCTGGCTACCCGCTTTATCCCTGGAGGCAAGGCTAGCCGGGGCCAGCGGGCACTGGTGTTCCTAACCACCAGCCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
CDS CAA 90 bp TCTAGACCCAAGCTGAGCACTCGACGGGCAAAGGCAGCCGCCGCCTaGGCCACCTGCTCCTGGCGCTCTATTTTGGTCAACCTCTCCCTG +
Preference number: 6 (lower is better)
Translates to: SRPKLSTRRAKAAAA*ATCSWRSILVNLSL
Trigger: CAGGGAGAGGTTGACCAAAATAGAGCGCCAGGAGCAGGTGGCCAAGGCGGCGGCTGCCTTTGCCCGTCGAGTGCTCAGCTTGGGTCTAGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
CDS TCA 72 bp ACAGGCACAATCTCCCGACACTCGGGGCAGCGGACCTaGCCACCGATGTCCAGTTGTGCCAGACAGTCCTGG +
Preference number: 6 (lower is better)
Translates to: TGTISRHSGQRT*PPMSSCARQSW
Trigger: CCAGGACTGTCTGGCACAACTGGACATCGGTGGTCAGGTCCGCTGCCCCGAGTGTCGGGAGATTGTGCCTGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000054384.6
ENSMUST00000152207.2
CDS CCA 72 bp GGAGGAGGCCGGAACCTTCTAGGTTTGGCCTCAGGATaGGGCTGGGCTCCCGAGAAACAGACTTGCCTCTGC +
Preference number: 6 (lower is better)
Translates to: GGGRNLLGLASG*GWAPEKQTCLC
Trigger: GCAGAGGCAAGTCTGTTTCTCGGGAGCCCAGCCCCATCCTGAGGCCAAACCTAGAAGGTTCCGGCCTCCTCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
CDS CAA 72 bp AAGCTGAGCACTCGACGGGCAAAGGCAGCCGCCGCCTaGGCCACCTGCTCCTGGCGCTCTATTTTGGTCAAC +
Preference number: 6 (lower is better)
Translates to: KLSTRRAKAAAA*ATCSWRSILVN
Trigger: GTTGACCAAAATAGAGCGCCAGGAGCAGGTGGCCAAGGCGGCGGCTGCCTTTGCCCGTCGAGTGCTCAGCTT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
CDS CAA 72 bp GGCTCCTCAAAGATGAGTCGGAGCAGGTGGCAGTTCTaGTCCTCGAGCCCGGGATGGAGCTCTAGCTGGGGC +
Preference number: 6 (lower is better)
Translates to: GSSKMSRSRWQF*SSSPGWSSSWG
Trigger: GCCCCAGCTAGAGCTCCATCCCGGGCTCGAGGACAAGAACTGCCACCTGCTCCGACTCATCTTTGAGGAGCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
CDS TCA 72 bp TCCAGGGAGCATCCTGAAGCTGGCGCAGGCGCTGTGTaGTTGCTCCCTCCAGCGAAAGGATCTCGGCCTCTA +
Preference number: 6 (lower is better)
Translates to: SREHPEAGAGAV*LLPPAKGSRPL
Trigger: TAGAGGCCGAGATCCTTTCGCTGGAGGGAGCAATCACACAGCGCCTGCGCCAGCTTCAGGATGCTCCCTGGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
CDS CAA 72 bp GGTACCAGCCCCACCCTTCCCGCTGTCCTTCGGGGATaGTTTAGGCTCCTCAAAGATGAGTCGGAGCAGGTG +
Preference number: 6 (lower is better)
Translates to: GTSPTLPAVLRG*FRLLKDESEQV
Trigger: CACCTGCTCCGACTCATCTTTGAGGAGCCTAAACAATCCCCGAAGGACAGCGGGAAGGGTGGGGCTGGTACC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
CDS CAA 90 bp CCCTCCTTGGGTACCAGCCCCACCCTTCCCGCTGTCCTTCGGGGATaGTTTAGGCTCCTCAAAGATGAGTCGGAGCAGGTGGCAGTTCTT +
Preference number: 6 (lower is better)
Translates to: PSLGTSPTLPAVLRG*FRLLKDESEQVAVL
Trigger: AAGAACTGCCACCTGCTCCGACTCATCTTTGAGGAGCCTAAACAATCCCCGAAGGACAGCGGGAAGGGTGGGGCTGGTACCCAAGGAGGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
CDS CAA 90 bp TGGACGTCTCCGGGAGCTCTGGCCTTGACAAGATCCAAGAGCCCATaGACAAAGAAGTTGGTCTTAAAGGCGGCCACCCCTTCGGCGGGT +
Preference number: 6 (lower is better)
Translates to: WTSPGALALTRSKSP*TKKLVLKAATPSAG
Trigger: ACCCGCCGAAGGGGTGGCCGCCTTTAAGACCAACTTCTTTGTCAATGGGCTCTTGGATCTTGTCAAGGCCAGAGCTCCCGGAGACGTCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000054384.6
ENSMUST00000152207.2
CDS CAA 90 bp GATTGTTTAGGCTCCTCAAAGATGAGTCGGAGCAGGTGGCAGTTCTaGTCCTCGAGCCCGGGATGGAGCTCTAGCTGGGGCAGCACACAG +
Preference number: 6 (lower is better)
Translates to: DCLGSSKMSRSRWQF*SSSPGWSSSWGSTQ
Trigger: CTGTGTGCTGCCCCAGCTAGAGCTCCATCCCGGGCTCGAGGACAAGAACTGCCACCTGCTCCGACTCATCTTTGAGGAGCCTAAACAATC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
CDS CCA 72 bp GAAGCAAGGCCAGGGCTTCCTTTTCTGCCACCCGAGTaGCTTCTAGCTCCACCAGATTGCTGTCCACACCTG +
Preference number: 6 (lower is better)
Translates to: EARPGLPFLPPE*LLAPPDCCPHL
Trigger: CAGGTGTGGACAGCAATCTGGTGGAGCTAGAAGCCACTCGGGTGGCAGAAAAGGAAGCCCTGGCCTTGCTTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
CDS CAA 90 bp AGGGCTTCCTTTTCTGCCACCCGAGTGGCTTCTAGCTCCACCAGATaGCTGTCCACACCTGCCAATAACTCCTCAAGGCCTGGCTTCCTG +
Preference number: 6 (lower is better)
Translates to: RASFSATRVASSSTR*LSTPANNSSRPGFL
Trigger: CAGGAAGCCAGGCCTTGAGGAGTTATTGGCAGGTGTGGACAGCAATCTGGTGGAGCTAGAAGCCACTCGGGTGGCAGAAAAGGAAGCCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
CDS CAA 90 bp GCCTTGCCTCCAGGGATAAAGCGGGTAGCCAGGCTGCCATCTTTCTaGTATACCTCCACATGGCCTGCCACACTGACAGCTACTCGGTCT +
Preference number: 6 (lower is better)
Translates to: ALPPGIKRVARLPSF*YTSTWPATLTATRS
Trigger: AGACCGAGTAGCTGTCAGTGTGGCAGGCCATGTGGAGGTATACAAGAAAGATGGCAGCCTGGCTACCCGCTTTATCCCTGGAGGCAAGGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
CDS CCA 72 bp CATCATCTTCTTGGGGGTTCTGGTCTTTGCCTTCTTTaGGAGTCAGGGGCTGGGCTCCACCCTGCTTCCCTA +
Preference number: 6 (lower is better)
Translates to: HHLLGGSGLCLL*ESGAGLHPASL
Trigger: TAGGGAAGCAGGGTGGAGCCCAGCCCCTGACTCCCAAAGAAGGCAAAGACCAGAACCCCCAAGAAGATGATG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
CDS CAA 90 bp GGAGCTCTGGCCTTGACAAGATCCAAGAGCCCATTGACAAAGAAGTaGGTCTTAAAGGCGGCCACCCCTTCGGCGGGTACAGGCACAATC +
Preference number: 6 (lower is better)
Translates to: GALALTRSKSPLTKK*VLKAATPSAGTGTI
Trigger: GATTGTGCCTGTACCCGCCGAAGGGGTGGCCGCCTTTAAGACCAACTTCTTTGTCAATGGGCTCTTGGATCTTGTCAAGGCCAGAGCTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000054384.6
ENSMUST00000152207.2
CDS GCA 72 bp AGGGGTGATCGATATGGGGACCCAGGCGGCAATCCTTaGAGAGCAACTGAGAACAAGGTTGACAGAGGAAGC +
Preference number: 6 (lower is better)
Translates to: RGDRYGDPGGNP*RATENKVDRGS
Trigger: GCTTCCTCTGTCAACCTTGTTCTCAGTTGCTCTGCAAGGATTGCCGCCTGGGTCCCCATATCGATCACCCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000054384.6
ENSMUST00000152207.2
CDS GCA 72 bp TTTCTGCCACCCGAGTGGCTTCTAGCTCCACCAGATTaGTGTCCACACCTGCCAATAACTCCTCAAGGCCTG +
Preference number: 6 (lower is better)
Translates to: FLPPEWLLAPPD*CPHLPITPQGL
Trigger: CAGGCCTTGAGGAGTTATTGGCAGGTGTGGACAGCAATCTGGTGGAGCTAGAAGCCACTCGGGTGGCAGAAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
CDS CCA 72 bp GATTGTTTAGGCTCCTCAAAGATGAGTCGGAGCAGGTaGCAGTTCTTGTCCTCGAGCCCGGGATGGAGCTCT +
Preference number: 6 (lower is better)
Translates to: DCLGSSKMSRSR*QFLSSSPGWSS
Trigger: AGAGCTCCATCCCGGGCTCGAGGACAAGAACTGCCACCTGCTCCGACTCATCTTTGAGGAGCCTAAACAATC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
CDS CAA 72 bp CCGGGAGCTCTGGCCTTGACAAGATCCAAGAGCCCATaGACAAAGAAGTTGGTCTTAAAGGCGGCCACCCCT +
Preference number: 6 (lower is better)
Translates to: PGALALTRSKSP*TKKLVLKAATP
Trigger: AGGGGTGGCCGCCTTTAAGACCAACTTCTTTGTCAATGGGCTCTTGGATCTTGTCAAGGCCAGAGCTCCCGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000054384.6
ENSMUST00000152207.2
CDS CAA 72 bp CCAGGGATAAAGCGGGTAGCCAGGCTGCCATCTTTCTaGTATACCTCCACATGGCCTGCCACACTGACAGCT +
Preference number: 6 (lower is better)
Translates to: PGIKRVARLPSF*YTSTWPATLTA
Trigger: AGCTGTCAGTGTGGCAGGCCATGTGGAGGTATACAAGAAAGATGGCAGCCTGGCTACCCGCTTTATCCCTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
CDS CAA 90 bp TCTAGGTTTGGCCTCAGGATGGGGCTGGGCTCCCGAGAAACAGACTaGCCTCTGCCTTTGCACTTCTTCTTCTTGTTAGGCCTGTTACCC +
Preference number: 6 (lower is better)
Translates to: SRFGLRMGLGSRETD*PLPLHFFFLLGLLP
Trigger: GGGTAACAGGCCTAACAAGAAGAAGAAGTGCAAAGGCAGAGGCAAGTCTGTTTCTCGGGAGCCCAGCCCCATCCTGAGGCCAAACCTAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
CDS TCA 72 bp CATCTTTCTTGTATACCTCCACATGGCCTGCCACACTaGCAGCTACTCGGTCTCCACATGGCATTGCGGCCA +
Preference number: 6 (lower is better)
Translates to: HLSCIPPHGLPH*QLLGLHMALRP
Trigger: TGGCCGCAATGCCATGTGGAGACCGAGTAGCTGTCAGTGTGGCAGGCCATGTGGAGGTATACAAGAAAGATG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
CDS GCA 72 bp CAGGCTGCCATCTTTCTTGTATACCTCCACATGGCCTaGCACACTGACAGCTACTCGGTCTCCACATGGCAT +
Preference number: 6 (lower is better)
Translates to: QAAIFLVYLHMA*HTDSYSVSTWH
Trigger: ATGCCATGTGGAGACCGAGTAGCTGTCAGTGTGGCAGGCCATGTGGAGGTATACAAGAAAGATGGCAGCCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
CDS CCA 72 bp GTAGCCAGGCTGCCATCTTTCTTGTATACCTCCACATaGCCTGCCACACTGACAGCTACTCGGTCTCCACAT +
Preference number: 6 (lower is better)
Translates to: VARLPSFLYTST*PATLTATRSPH
Trigger: ATGTGGAGACCGAGTAGCTGTCAGTGTGGCAGGCCATGTGGAGGTATACAAGAAAGATGGCAGCCTGGCTAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
CDS CCA 72 bp TCTACCATGGTGGTTACCCGGGGCTTTTCCAGGCCATaGTATGCTGTTAGGAAGTCACCAAGAAGTGACCCC +
Preference number: 6 (lower is better)
Translates to: STMVVTRGFSRP*YAVRKSPRSDP
Trigger: GGGGTCACTTCTTGGTGACTTCCTAACAGCATACCATGGCCTGGAAAAGCCCCGGGTAACCACCATGGTAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
CDS CAA 72 bp GCCTTGACAAGATCCAAGAGCCCATTGACAAAGAAGTaGGTCTTAAAGGCGGCCACCCCTTCGGCGGGTACA +
Preference number: 6 (lower is better)
Translates to: ALTRSKSPLTKK*VLKAATPSAGT
Trigger: TGTACCCGCCGAAGGGGTGGCCGCCTTTAAGACCAACTTCTTTGTCAATGGGCTCTTGGATCTTGTCAAGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000054384.6
ENSMUST00000152207.2
CDS CAA 72 bp GGCTTCCCTGAATGGACGTCTCCGGGAGCTCTGGCCTaGACAAGATCCAAGAGCCCATTGACAAAGAAGTTG +
Preference number: 6 (lower is better)
Translates to: GFPEWTSPGALA*TRSKSPLTKKL
Trigger: CAACTTCTTTGTCAATGGGCTCTTGGATCTTGTCAAGGCCAGAGCTCCCGGAGACGTCCATTCAGGGAAGCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054384.6
ENSMUST00000152207.2
CDS CAA 72 bp TTTTCTGCCACCCGAGTGGCTTCTAGCTCCACCAGATaGCTGTCCACACCTGCCAATAACTCCTCAAGGCCT +
Preference number: 6 (lower is better)
Translates to: FSATRVASSSTR*LSTPANNSSRP
Trigger: AGGCCTTGAGGAGTTATTGGCAGGTGTGGACAGCAATCTGGTGGAGCTAGAAGCCACTCGGGTGGCAGAAAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
CDS CAA 72 bp TGGATGGTCCCATTGCTAAGTGACACCACCAAGTACTaGCCGTCTACCATGGTGGTTACCCGGGGCTTTTCC +
Preference number: 6 (lower is better)
Translates to: WMVPLLSDTTKY*PSTMVVTRGFS
Trigger: GGAAAAGCCCCGGGTAACCACCATGGTAGACGGCAAGTACTTGGTGGTGTCACTTAGCAATGGGACCATCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
CDS CAA 90 bp CTAAAGACATGGATGGTCCCATTGCTAAGTGACACCACCAAGTACTaGCCGTCTACCATGGTGGTTACCCGGGGCTTTTCCAGGCCATGG +
Preference number: 6 (lower is better)
Translates to: LKTWMVPLLSDTTKY*PSTMVVTRGFSRPW
Trigger: CCATGGCCTGGAAAAGCCCCGGGTAACCACCATGGTAGACGGCAAGTACTTGGTGGTGTCACTTAGCAATGGGACCATCCATGTCTTTAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
CDS CAA 90 bp GCGCAAGTTGGCTTCCCTGAATGGACGTCTCCGGGAGCTCTGGCCTaGACAAGATCCAAGAGCCCATTGACAAAGAAGTTGGTCTTAAAG +
Preference number: 6 (lower is better)
Translates to: AQVGFPEWTSPGALA*TRSKSPLTKKLVLK
Trigger: CTTTAAGACCAACTTCTTTGTCAATGGGCTCTTGGATCTTGTCAAGGCCAGAGCTCCCGGAGACGTCCATTCAGGGAAGCCAACTTGCGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000054384.6
ENSMUST00000152207.2
CDS CAA 90 bp TCCAGGCCATGGTATGCTGTTAGGAAGTCACCAAGAAGTGACCCCTaGGGATCCAGTATCACCACCTTGTTTACCTCTCGAAGGGTCAGA +
Preference number: 6 (lower is better)
Translates to: SRPWYAVRKSPRSDP*GSSITTLFTSRRVR
Trigger: TCTGACCCTTCGAGAGGTAAACAAGGTGGTGATACTGGATCCCAAGGGGTCACTTCTTGGTGACTTCCTAACAGCATACCATGGCCTGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
CDS TCA 72 bp CCTGACCCTAAAGACATGGATGGTCCCATTGCTAAGTaGCACCACCAAGTACTTGCCGTCTACCATGGTGGT +
Preference number: 6 (lower is better)
Translates to: PDPKDMDGPIAK*HHQVLAVYHGG
Trigger: ACCACCATGGTAGACGGCAAGTACTTGGTGGTGTCACTTAGCAATGGGACCATCCATGTCTTTAGGGTCAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
CDS CAA 90 bp GGCTCCCGAGAAACAGACTTGCCTCTGCCTTTGCACTTCTTCTTCTaGTTAGGCCTGTTACCCCTTTCGATGAAGACCCCATCATCTTCT +
Preference number: 6 (lower is better)
Translates to: GSRETDLPLPLHFFF*LGLLPLSMKTPSSS
Trigger: AGAAGATGATGGGGTCTTCATCGAAAGGGGTAACAGGCCTAACAAGAAGAAGAAGTGCAAAGGCAGAGGCAAGTCTGTTTCTCGGGAGCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
CDS TCA 72 bp TCAGGGACCTGCGCCACTGAATTTCTCCGTCAGGACTaGCAAGATAGAGTTTTGCATTGGCAGAGAAAGCCA +
Preference number: 6 (lower is better)
Translates to: SGTCATEFLRQD*QDRVLHWQRKP
Trigger: TGGCTTTCTCTGCCAATGCAAAACTCTATCTTGTCAGTCCTGACGGAGAAATTCAGTGGCGCAGGTCCCTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
CDS CAA 72 bp TCAGGAAACCTGACCCTAAAGACATGGATGGTCCCATaGCTAAGTGACACCACCAAGTACTTGCCGTCTACC +
Preference number: 6 (lower is better)
Translates to: SGNLTLKTWMVP*LSDTTKYLPST
Trigger: GGTAGACGGCAAGTACTTGGTGGTGTCACTTAGCAATGGGACCATCCATGTCTTTAGGGTCAGGTTTCCTGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
CDS GCA 72 bp CTGAATTTCTCCGTCAGGACTGACAAGATAGAGTTTTaGATTGGCAGAGAAAGCCACTGCATTCTGCAGGGC +
Preference number: 6 (lower is better)
Translates to: LNFSVRTDKIEF*IGRESHCILQG
Trigger: GCCCTGCAGAATGCAGTGGCTTTCTCTGCCAATGCAAAACTCTATCTTGTCAGTCCTGACGGAGAAATTCAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6
CDS CAA 72 bp GAAACAGACTTGCCTCTGCCTTTGCACTTCTTCTTCTaGTTAGGCCTGTTACCCCTTTCGATGAAGACCCCA +
Preference number: 6 (lower is better)
Translates to: ETDLPLPLHFFF*LGLLPLSMKTP
Trigger: TGGGGTCTTCATCGAAAGGGGTAACAGGCCTAACAAGAAGAAGAAGTGCAAAGGCAGAGGCAAGTCTGTTTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000054384.6