Pregenerated sensors for TRIM52 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000022113Ensembl transcript IDs: ENSMUST00000022708.7
Found 47 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | CAAAGCTACCACACACAGATTTTTAACTTGTTACAAACACACCACCTAAAGTATATTCCTCCCCAAAACTaGGATAGCACTGAGACTGAA | + |
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Preference number: 2 (lower is better) Translates to: QSYHTQIFNLLQTHHLKYIPPQN*DSTETE Trigger: TTCAGTCTCAGTGCTATCCCAGTTTTGGGGAGGAAT...ATACTTTAGGTGGTGTGTTTGTAACAAGTTAAAAATCTGTGTGTGGTAGCTTTG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000022708.7 |
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| 3UTR-3UTR TCA 90 bp | CAAAGCTACCACACACAGATTTTTAACTTGTTACAAACACACCACCTAAAGTATATAGTGACAAAAACCTaGAGATTTCCAAAGCAATCC | + |
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Preference number: 2 (lower is better) Translates to: QSYHTQIFNLLQTHHLKYIVTKT*RFPKQS Trigger: GGATTGCTTTGGAAATCTTCAGGTTTTTGTCACTAT...ATACTTTAGGTGGTGTGTTTGTAACAAGTTAAAAATCTGTGTGTGGTAGCTTTG 36% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000022708.7 |
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| 3UTR-3UTR TCA 90 bp | CAAAGCTACCACACACAGATTTTTAACTTGTTACAAACACACCACCTAAAGTATTTGTTGTCCAAATGCTaGATGCAGTTCTCTTTAATG | + |
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Preference number: 2 (lower is better) Translates to: QSYHTQIFNLLQTHHLKYLLSKC*MQFSLM Trigger: CATTAAAGAGAACTGCATTCAGCATTTGGACAACAA...ATACTTTAGGTGGTGTGTTTGTAACAAGTTAAAAATCTGTGTGTGGTAGCTTTG 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022708.7 |
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| 3UTR-3UTR CAA 90 bp | CAAAGCTACCACACACAGATTTTTAACTTGTTACAAACACACCACCTAAAGTATGGAAGAAGGATAGGGTaGCAAGAAAGGGTAATGGTG | + |
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Preference number: 3 (lower is better) Translates to: QSYHTQIFNLLQTHHLKYGRRIG*QERVMV Trigger: CACCATTACCCTTTCTTGCAACCCTATCCTTCTTCC...ATACTTTAGGTGGTGTGTTTGTAACAAGTTAAAAATCTGTGTGTGGTAGCTTTG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022708.7 |
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| 3UTR-3UTR CAA 90 bp | CAAAGCTACCACACACAGATTTTTAACTTGTTACAAACACACCACCTAAAGTATTTCCTTGAAATAGCATaGAATGGGGACTACCCAGGA | + |
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Preference number: 3 (lower is better) Translates to: QSYHTQIFNLLQTHHLKYFLEIA*NGDYPG Trigger: TCCTGGGTAGTCCCCATTCAATGCTATTTCAAGGAA...ATACTTTAGGTGGTGTGTTTGTAACAAGTTAAAAATCTGTGTGTGGTAGCTTTG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022708.7 |
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| 3UTR TCA 72 bp | GTCTTTTTGCACCTATTCAGTAAAAACTGGACAAGGTaGAACACATTTATCCTCTCAAAGCTACCACACACA | + |
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Preference number: 3 (lower is better) Translates to: VFLHLFSKNWTR*NTFILSKLPHT Trigger: TGTGTGTGGTAGCTTTGAGAGGATAAATGTGTTTCACCTTGTCCAGTTTTTACTGAATAGGTGCAAAAAGAC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000022708.7 |
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| 3UTR-3UTR CAA 90 bp | CAAAGCTACCACACACAGATTTTTAACTTGTTACAAACACACCACCTAAAGTATTCTGAAAGCCTAATTTaGAAGCTAAGCAAAGCAGTT | + |
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Preference number: 3 (lower is better) Translates to: QSYHTQIFNLLQTHHLKYSESLI*KLSKAV Trigger: AACTGCTTTGCTTAGCTTCAAAATTAGGCTTTCAGA...ATACTTTAGGTGGTGTGTTTGTAACAAGTTAAAAATCTGTGTGTGGTAGCTTTG 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022708.7 |
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| 3UTR-3UTR CAA 90 bp | CAAAGCTACCACACACAGATTTTTAACTTGTTACAAACACACCACCTAAAGTATATTGGTTCCCTAATATaGGAATTGTTGTCCAAATGC | + |
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Preference number: 3 (lower is better) Translates to: QSYHTQIFNLLQTHHLKYIGSLI*ELLSKC Trigger: GCATTTGGACAACAATTCCAATATTAGGGAACCAAT...ATACTTTAGGTGGTGTGTTTGTAACAAGTTAAAAATCTGTGTGTGGTAGCTTTG 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022708.7 |
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| CDS-3UTR CCA 90 bp | CAAAGCTACCACACACAGATTTTTAACTTGTTACAAACACACCACCTAAAGTATTCCTTGCCCCACAGCTaGGTCACACACCCTCGGCAG | + |
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Preference number: 4 (lower is better) Translates to: QSYHTQIFNLLQTHHLKYSLPHS*VTHPRQ Trigger: CTGCCGAGGGTGTGTGACCCAGCTGTGGGGCAAGGA...ATACTTTAGGTGGTGTGTTTGTAACAAGTTAAAAATCTGTGTGTGGTAGCTTTG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022708.7 |
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| CDS-3UTR GCA 90 bp | CAAAGCTACCACACACAGATTTTTAACTTGTTACAAACACACCACCTAAAGTATGGCTGTTCCCGGTCCTaGTCATCTTCCTTGCCCCAC | + |
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Preference number: 4 (lower is better) Translates to: QSYHTQIFNLLQTHHLKYGCSRS*SSSLPH Trigger: GTGGGGCAAGGAAGATGAGCAGGACCGGGAACAGCC...ATACTTTAGGTGGTGTGTTTGTAACAAGTTAAAAATCTGTGTGTGGTAGCTTTG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022708.7 |
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| CDS-3UTR CCA 90 bp | CAAAGCTACCACACACAGATTTTTAACTTGTTACAAACACACCACCTAAAGTATACCACGGTGGAAGATTaGAGGGTGGCGGTGGCGATG | + |
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Preference number: 4 (lower is better) Translates to: QSYHTQIFNLLQTHHLKYTTVED*RVAVAM Trigger: CATCGCCACCGCCACCCTCCAATCTTCCACCGTGGT...ATACTTTAGGTGGTGTGTTTGTAACAAGTTAAAAATCTGTGTGTGGTAGCTTTG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022708.7 |
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| CDS-3UTR CCA 90 bp | CAAAGCTACCACACACAGATTTTTAACTTGTTACAAACACACCACCTAAAGTATAGGAACCTGGGCATGTaGAGAAGGAACCCGGGCGTC | + |
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Preference number: 4 (lower is better) Translates to: QSYHTQIFNLLQTHHLKYRNLGM*RRNPGV Trigger: GACGCCCGGGTTCCTTCTCCACATGCCCAGGTTCCT...ATACTTTAGGTGGTGTGTTTGTAACAAGTTAAAAATCTGTGTGTGGTAGCTTTG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022708.7 |
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| CDS-3UTR GCA 90 bp | CAAAGCTACCACACACAGATTTTTAACTTGTTACAAACACACCACCTAAAGTATCCTGCTCATCTTCCTTaGCCCACAGCTGGGTCACAC | + |
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Preference number: 4 (lower is better) Translates to: QSYHTQIFNLLQTHHLKYPAHLP*PTAGSH Trigger: GTGTGACCCAGCTGTGGGGCAAGGAAGATGAGCAGG...ATACTTTAGGTGGTGTGTTTGTAACAAGTTAAAAATCTGTGTGTGGTAGCTTTG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022708.7 |
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| CDS-3UTR GCA 90 bp | CAAAGCTACCACACACAGATTTTTAACTTGTTACAAACACACCACCTAAAGTATCCTGCATGTGCTCTGTaGTGCTCCTGCTCGGTGTAC | + |
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Preference number: 4 (lower is better) Translates to: QSYHTQIFNLLQTHHLKYPACAL*CSCSVY Trigger: GTACACCGAGCAGGAGCAGCACAGAGCACATGCAGG...ATACTTTAGGTGGTGTGTTTGTAACAAGTTAAAAATCTGTGTGTGGTAGCTTTG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022708.7 |
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| CDS-3UTR CCA 90 bp | CAAAGCTACCACACACAGATTTTTAACTTGTTACAAACACACCACCTAAAGTATAGGAACCTGGGCATGTaGAGGAGGAACCTGGGCATG | + |
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Preference number: 4 (lower is better) Translates to: QSYHTQIFNLLQTHHLKYRNLGM*RRNLGM Trigger: CATGCCCAGGTTCCTCCTCCACATGCCCAGGTTCCT...ATACTTTAGGTGGTGTGTTTGTAACAAGTTAAAAATCTGTGTGTGGTAGCTTTG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022708.7 |
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| CDS-3UTR TCA 90 bp | CAAAGCTACCACACACAGATTTTTAACTTGTTACAAACACACCACCTAAAGTATTGCTGTCTATGGCTATaGCCGACCCACTGTCCTGCA | + |
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Preference number: 4 (lower is better) Translates to: QSYHTQIFNLLQTHHLKYCCLWL*PTHCPA Trigger: TGCAGGACAGTGGGTCGGTCATAGCCATAGACAGCA...ATACTTTAGGTGGTGTGTTTGTAACAAGTTAAAAATCTGTGTGTGGTAGCTTTG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022708.7 |
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| CDS-3UTR GCA 90 bp | CAAAGCTACCACACACAGATTTTTAACTTGTTACAAACACACCACCTAAAGTATGCTCTGTGCTGCTCCTaGTCGGTGTACCTAGGAAAC | + |
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Preference number: 4 (lower is better) Translates to: QSYHTQIFNLLQTHHLKYALCCS*SVYLGN Trigger: GTTTCCTAGGTACACCGAGCAGGAGCAGCACAGAGC...ATACTTTAGGTGGTGTGTTTGTAACAAGTTAAAAATCTGTGTGTGGTAGCTTTG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022708.7 |
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| CDS-3UTR CCA 90 bp | CAAAGCTACCACACACAGATTTTTAACTTGTTACAAACACACCACCTAAAGTATGGTAGAGAAGGAACCTaGGCATGTGGAGGAGGAACC | + |
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Preference number: 4 (lower is better) Translates to: QSYHTQIFNLLQTHHLKYGREGT*ACGGGT Trigger: GGTTCCTCCTCCACATGCCCAGGTTCCTTCTCTACC...ATACTTTAGGTGGTGTGTTTGTAACAAGTTAAAAATCTGTGTGTGGTAGCTTTG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022708.7 |
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| CDS-3UTR GCA 90 bp | CAAAGCTACCACACACAGATTTTTAACTTGTTACAAACACACCACCTAAAGTATAAAGTCCTTCGGCATTaGGGGCAGCTGAAGACCTGT | + |
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Preference number: 4 (lower is better) Translates to: QSYHTQIFNLLQTHHLKYKVLRH*GQLKTC Trigger: ACAGGTCTTCAGCTGCCCGCAATGCCGAAGGACTTT...ATACTTTAGGTGGTGTGTTTGTAACAAGTTAAAAATCTGTGTGTGGTAGCTTTG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022708.7 |
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| CDS-3UTR CCA 90 bp | CAAAGCTACCACACACAGATTTTTAACTTGTTACAAACACACCACCTAAAGTATTGGCCAGCTGCAAATTaGGTCGAAAACTGCGACTTG | + |
|
Preference number: 4 (lower is better) Translates to: QSYHTQIFNLLQTHHLKYWPAAN*VENCDL Trigger: CAAGTCGCAGTTTTCGACCCAATTTGCAGCTGGCCA...ATACTTTAGGTGGTGTGTTTGTAACAAGTTAAAAATCTGTGTGTGGTAGCTTTG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022708.7 |
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| CDS-3UTR GCA 90 bp | CAAAGCTACCACACACAGATTTTTAACTTGTTACAAACACACCACCTAAAGTATACTCAGAGTTTGCATTaGCCTGATGCTGTCTATGGC | + |
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Preference number: 4 (lower is better) Translates to: QSYHTQIFNLLQTHHLKYTQSLH*PDAVYG Trigger: GCCATAGACAGCATCAGGGCAATGCAAACTCTGAGT...ATACTTTAGGTGGTGTGTTTGTAACAAGTTAAAAATCTGTGTGTGGTAGCTTTG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022708.7 |
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| CDS-3UTR GCA 90 bp | CAAAGCTACCACACACAGATTTTTAACTTGTTACAAACACACCACCTAAAGTATACCATGTTGGCCAGCTaGAAATTGGGTCGAAAACTG | + |
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Preference number: 4 (lower is better) Translates to: QSYHTQIFNLLQTHHLKYTMLAS*KLGRKL Trigger: CAGTTTTCGACCCAATTTGCAGCTGGCCAACATGGT...ATACTTTAGGTGGTGTGTTTGTAACAAGTTAAAAATCTGTGTGTGGTAGCTTTG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022708.7 |
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| CDS-3UTR CCA 90 bp | CAAAGCTACCACACACAGATTTTTAACTTGTTACAAACACACCACCTAAAGTATTTATATGGACCATGTTaGCCAGCTGCAAATTGGGTC | + |
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Preference number: 4 (lower is better) Translates to: QSYHTQIFNLLQTHHLKYLYGPC*PAANWV Trigger: GACCCAATTTGCAGCTGGCCAACATGGTCCATATAA...ATACTTTAGGTGGTGTGTTTGTAACAAGTTAAAAATCTGTGTGTGGTAGCTTTG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022708.7 |
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| 3UTR CAA 72 bp | AGGCTCATGAAAACATTCAGTTCTGAAAGCCTAATTTaGAAGCTAAGCAAAGCAGTTTTCTTCGTTCCCACA | + |
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Preference number: 4 (lower is better) Translates to: RLMKTFSSESLI*KLSKAVFFVPT Trigger: TGTGGGAACGAAGAAAACTGCTTTGCTTAGCTTCAAAATTAGGCTTTCAGAACTGAATGTTTTCATGAGCCT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022708.7 |
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| CDS-3UTR GCA 90 bp | CAAAGCTACCACACACAGATTTTTAACTTGTTACAAACACACCACCTAAAGTATAATTGGGTCGAAAACTaGGACTTGGAAAAGTCCTTC | + |
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Preference number: 4 (lower is better) Translates to: QSYHTQIFNLLQTHHLKYNWVEN*DLEKSF Trigger: GAAGGACTTTTCCAAGTCGCAGTTTTCGACCCAATT...ATACTTTAGGTGGTGTGTTTGTAACAAGTTAAAAATCTGTGTGTGGTAGCTTTG 38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000022708.7 |
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| CDS-3UTR CCA 90 bp | CAAAGCTACCACACACAGATTTTTAACTTGTTACAAACACACCACCTAAAGTATTTCATCTCTCTCTTCTaGAAAAACCCTAATTCTCAG | + |
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Preference number: 4 (lower is better) Translates to: QSYHTQIFNLLQTHHLKYFISLF*KNPNSQ Trigger: CTGAGAATTAGGGTTTTTCCAGAAGAGAGAGATGAA...ATACTTTAGGTGGTGTGTTTGTAACAAGTTAAAAATCTGTGTGTGGTAGCTTTG 36% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000022708.7 |
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| CDS CCA 90 bp | AGGAACCCGGGCGTCTGGATAGAGCTGCCGACGCACAGGCGGATGTaGGGGACCACGGTGGAAGATTGGAGGGTGGCGGTGGCGATGGCG | + |
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Preference number: 5 (lower is better) Translates to: RNPGVWIELPTHRRM*GTTVEDWRVAVAMA Trigger: CGCCATCGCCACCGCCACCCTCCAATCTTCCACCGTGGTCCCCCACATCCGCCTGTGCGTCGGCAGCTCTATCCAGACGCCCGGGTTCCT 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022708.7 |
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| CDS GCA 90 bp | ACCTCCCGGATGACGCGCTCCTGCACAGCAGGCTGTTCCCGGTCCTaGTCATCTTCCTTGCCCCACAGCTGGGTCACACACCCTCGGCAG | + |
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Preference number: 5 (lower is better) Translates to: TSRMTRSCTAGCSRS*SSSLPHSWVTHPRQ Trigger: CTGCCGAGGGTGTGTGACCCAGCTGTGGGGCAAGGAAGATGAGCAGGACCGGGAACAGCCTGCTGTGCAGGAGCGCGTCATCCGGGAGGT 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022708.7 |
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| CDS CCA 90 bp | GAGCTGCCGACGCACAGGCGGATGTGGGGGACCACGGTGGAAGATTaGAGGGTGGCGGTGGCGATGGCGGTAGCGACCAAACCGATGGTA | + |
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Preference number: 5 (lower is better) Translates to: ELPTHRRMWGTTVED*RVAVAMAVATKPMV Trigger: TACCATCGGTTTGGTCGCTACCGCCATCGCCACCGCCACCCTCCAATCTTCCACCGTGGTCCCCCACATCCGCCTGTGCGTCGGCAGCTC 66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022708.7 |
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| CDS CCA 90 bp | GGGCAGCTGAAGACCTGTGGTGTGGGCCGAGGTAGAGAAGGAACCTaGGCATGTGGAGGAGGAACCTGGGCATGTGGAGAAGGAACCCGG | + |
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Preference number: 5 (lower is better) Translates to: GQLKTCGVGRGREGT*ACGGGTWACGEGTR Trigger: CCGGGTTCCTTCTCCACATGCCCAGGTTCCTCCTCCACATGCCCAGGTTCCTTCTCTACCTCGGCCCACACCACAGGTCTTCAGCTGCCC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022708.7 |
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| CDS GCA 90 bp | TGCATTGCCCTGATGCTGTCTATGGCTATGACCGACCCACTGTCCTaGATGTGCTCTGTGCTGCTCCTGCTCGGTGTACCTAGGAAACAA | + |
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Preference number: 5 (lower is better) Translates to: CIALMLSMAMTDPLS*MCSVLLLLGVPRKQ Trigger: TTGTTTCCTAGGTACACCGAGCAGGAGCAGCACAGAGCACATGCAGGACAGTGGGTCGGTCATAGCCATAGACAGCATCAGGGCAATGCA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022708.7 |
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| CDS GCA 90 bp | GGAGTATGGCAAATCTGGCGAATTATATGGACCATGTTGGCCAGCTaGAAATTGGGTCGAAAACTGCGACTTGGAAAAGTCCTTCGGCAT | + |
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Preference number: 5 (lower is better) Translates to: GVWQIWRIIWTMLAS*KLGRKLRLGKVLRH Trigger: ATGCCGAAGGACTTTTCCAAGTCGCAGTTTTCGACCCAATTTGCAGCTGGCCAACATGGTCCATATAATTCGCCAGATTTGCCATACTCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022708.7 |
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| CDS-3UTR CAA 90 bp | CAAAGCTACCACACACAGATTTTTAACTTGTTACAAACACACCACCTAAAGTATCATCCCACTCAGAGTTaGCATTGCCCTGATGCTGTC | + |
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Preference number: 5 (lower is better) Translates to: QSYHTQIFNLLQTHHLKYHPTQS*HCPDAV Trigger: GACAGCATCAGGGCAATGCAAACTCTGAGTGGGATG...ATACTTTAGGTGGTGTGTTTGTAACAAGTTAAAAATCTGTGTGTGGTAGCTTTG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022708.7 |
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| CDS-3UTR CAA 90 bp | CAAAGCTACCACACACAGATTTTTAACTTGTTACAAACACACCACCTAAAGTATTTGGCCAGCTGCAAATaGGGTCGAAAACTGCGACTT | + |
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Preference number: 5 (lower is better) Translates to: QSYHTQIFNLLQTHHLKYLASCK*GRKLRL Trigger: AAGTCGCAGTTTTCGACCCAATTTGCAGCTGGCCAA...ATACTTTAGGTGGTGTGTTTGTAACAAGTTAAAAATCTGTGTGTGGTAGCTTTG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022708.7 |
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| CDS CCA 72 bp | GGCGTCTGGATAGAGCTGCCGACGCACAGGCGGATGTaGGGGACCACGGTGGAAGATTGGAGGGTGGCGGTG | + |
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Preference number: 6 (lower is better) Translates to: GVWIELPTHRRM*GTTVEDWRVAV Trigger: CACCGCCACCCTCCAATCTTCCACCGTGGTCCCCCACATCCGCCTGTGCGTCGGCAGCTCTATCCAGACGCC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022708.7 |
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| CDS CAA 72 bp | GACGCACAGGCGGATGTGGGGGACCACGGTGGAAGATaGGAGGGTGGCGGTGGCGATGGCGGTAGCGACCAA | + |
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Preference number: 6 (lower is better) Translates to: DAQADVGDHGGR*EGGGGDGGSDQ Trigger: TTGGTCGCTACCGCCATCGCCACCGCCACCCTCCAATCTTCCACCGTGGTCCCCCACATCCGCCTGTGCGTC 67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022708.7 |
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| CDS CAA 90 bp | AGAGCTGCCGACGCACAGGCGGATGTGGGGGACCACGGTGGAAGATaGGAGGGTGGCGGTGGCGATGGCGGTAGCGACCAAACCGATGGT | + |
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Preference number: 6 (lower is better) Translates to: RAADAQADVGDHGGR*EGGGGDGGSDQTDG Trigger: ACCATCGGTTTGGTCGCTACCGCCATCGCCACCGCCACCCTCCAATCTTCCACCGTGGTCCCCCACATCCGCCTGTGCGTCGGCAGCTCT 66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022708.7 |
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| CDS CCA 72 bp | ACGCACAGGCGGATGTGGGGGACCACGGTGGAAGATTaGAGGGTGGCGGTGGCGATGGCGGTAGCGACCAAA | + |
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Preference number: 6 (lower is better) Translates to: THRRMWGTTVED*RVAVAMAVATK Trigger: TTTGGTCGCTACCGCCATCGCCACCGCCACCCTCCAATCTTCCACCGTGGTCCCCCACATCCGCCTGTGCGT 65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022708.7 |
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| CDS GCA 72 bp | ATGACGCGCTCCTGCACAGCAGGCTGTTCCCGGTCCTaGTCATCTTCCTTGCCCCACAGCTGGGTCACACAC | + |
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Preference number: 6 (lower is better) Translates to: MTRSCTAGCSRS*SSSLPHSWVTH Trigger: GTGTGTGACCCAGCTGTGGGGCAAGGAAGATGAGCAGGACCGGGAACAGCCTGCTGTGCAGGAGCGCGTCAT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022708.7 |
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| CDS CAA 72 bp | GGGTCGAAAACTGCGACTTGGAAAAGTCCTTCGGCATaGCGGGCAGCTGAAGACCTGTGGTGTGGGCCGAGG | + |
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Preference number: 6 (lower is better) Translates to: GSKTATWKSPSA*RAAEDLWCGPR Trigger: CCTCGGCCCACACCACAGGTCTTCAGCTGCCCGCAATGCCGAAGGACTTTTCCAAGTCGCAGTTTTCGACCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022708.7 |
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| CDS TCA 72 bp | ATCCAGACAGATGGCACACACTGCTTCTTCCCGAAGTaGCTGCATAGGGCTGGGAGGCCGTGTAGAGGTGGC | + |
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Preference number: 6 (lower is better) Translates to: IQTDGTHCFFPK*LHRAGRPCRGG Trigger: GCCACCTCTACACGGCCTCCCAGCCCTATGCAGTCACTTCGGGAAGAAGCAGTGTGTGCCATCTGTCTGGAT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022708.7 |
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| CDS GCA 72 bp | CCGACCCACTGTCCTGCATGTGCTCTGTGCTGCTCCTaGTCGGTGTACCTAGGAAACAAAACCTCCCGGATG | + |
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Preference number: 6 (lower is better) Translates to: PTHCPACALCCS*SVYLGNKTSRM Trigger: CATCCGGGAGGTTTTGTTTCCTAGGTACACCGAGCAGGAGCAGCACAGAGCACATGCAGGACAGTGGGTCGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022708.7 |
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| CDS TCA 72 bp | TGCGACTTGGAAAAGTCCTTCGGCATTGCGGGCAGCTaGAGACCTGTGGTGTGGGCCGAGGTAGAGAAGGAA | + |
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Preference number: 6 (lower is better) Translates to: CDLEKSFGIAGS*RPVVWAEVEKE Trigger: TTCCTTCTCTACCTCGGCCCACACCACAGGTCTTCAGCTGCCCGCAATGCCGAAGGACTTTTCCAAGTCGCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022708.7 |
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| CDS GCA 72 bp | CTGATGCTGTCTATGGCTATGACCGACCCACTGTCCTaGATGTGCTCTGTGCTGCTCCTGCTCGGTGTACCT | + |
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Preference number: 6 (lower is better) Translates to: LMLSMAMTDPLS*MCSVLLLLGVP Trigger: AGGTACACCGAGCAGGAGCAGCACAGAGCACATGCAGGACAGTGGGTCGGTCATAGCCATAGACAGCATCAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022708.7 |
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| CDS GCA 72 bp | CTGTCTATGGCTATGACCGACCCACTGTCCTGCATGTaGTCTGTGCTGCTCCTGCTCGGTGTACCTAGGAAA | + |
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Preference number: 6 (lower is better) Translates to: LSMAMTDPLSCM*SVLLLLGVPRK Trigger: TTTCCTAGGTACACCGAGCAGGAGCAGCACAGAGCACATGCAGGACAGTGGGTCGGTCATAGCCATAGACAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022708.7 |
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| CDS CAA 72 bp | TGTTCCTGTCTTCTTCCTCGTCATCCCACTCAGAGTTaGCATTGCCCTGATGCTGTCTATGGCTATGACCGA | + |
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Preference number: 6 (lower is better) Translates to: CSCLLPRHPTQS*HCPDAVYGYDR Trigger: TCGGTCATAGCCATAGACAGCATCAGGGCAATGCAAACTCTGAGTGGGATGACGAGGAAGAAGACAGGAACA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022708.7 |
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| CDS GCA 72 bp | CAAATCTGGCGAATTATATGGACCATGTTGGCCAGCTaGAAATTGGGTCGAAAACTGCGACTTGGAAAAGTC | + |
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Preference number: 6 (lower is better) Translates to: QIWRIIWTMLAS*KLGRKLRLGKV Trigger: GACTTTTCCAAGTCGCAGTTTTCGACCCAATTTGCAGCTGGCCAACATGGTCCATATAATTCGCCAGATTTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022708.7 |
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