Pregenerated sensors for TRIM50 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000053388Ensembl transcript IDs: ENSMUST00000065785.4, ENSMUST00000111180.9
Found 78 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CCTCCCGACCTGCTCCCCTACCCACCCTCTCCCGCTTCTTGGCCCTaGCATTCTCCTGTACTGGGGACAGGGCTACTTTATGAGCAACTA | + |
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Preference number: 1 (lower is better) Translates to: PPDLLPYPPSPASWP*HSPVLGTGLLYEQL Trigger: TAGTTGCTCATAAAGTAGCCCTGTCCCCAGTACAGGAGAATGCCAGGGCCAAGAAGCGGGAGAGGGTGGGTAGGGGAGCAGGTCGGGAGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000065785.4 |
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| 3UTR TCA 90 bp | TGGGGACACGCGGGTGTGAAGAATCTTTTCAAGCAGTCCAAACACTaGGACCCAGCGGAAGCCCTCAAATCCCTTTGTCTTGCAAGACAG | + |
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Preference number: 1 (lower is better) Translates to: WGHAGVKNLFKQSKH*DPAEALKSLCLARQ Trigger: CTGTCTTGCAAGACAAAGGGATTTGAGGGCTTCCGCTGGGTCTCAGTGTTTGGACTGCTTGAAAAGATTCTTCACACCCGCGTGTCCCCA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000065785.4 |
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| 3UTR-3UTR TCA 90 bp | TCCCGACCTGCTCCCCTACCCACCCTCTCCCGCTTCTTGGCCCTGGCATTCTCCCATACCCCTAGGTGGTaGGGAAGAGGCTATATCCCC | + |
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Preference number: 2 (lower is better) Translates to: SRPAPLPTLSRFLALAFSHTPRW*GRGYIP Trigger: GGGGATATAGCCTCTTCCTCACCACCTAGGGGTATG...GGAGAATGCCAGGGCCAAGAAGCGGGAGAGGGTGGGTAGGGGAGCAGGTCGGGA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000065785.4 |
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| 3UTR CCA 72 bp | CTGCTCCCCTACCCACCCTCTCCCGCTTCTTGGCCCTaGCATTCTCCTGTACTGGGGACAGGGCTACTTTAT | + |
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Preference number: 3 (lower is better) Translates to: LLPYPPSPASWP*HSPVLGTGLLY Trigger: ATAAAGTAGCCCTGTCCCCAGTACAGGAGAATGCCAGGGCCAAGAAGCGGGAGAGGGTGGGTAGGGGAGCAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000065785.4 |
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| 3UTR-3UTR CAA 90 bp | GCTCCCCTACCCACCCTCTCCCGCTTCTTGGCCCTGGCATTCTCCTGTACTGGGTCAAATCCCTTTGTCTaGCAAGACAGACCAGGACAG | + |
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Preference number: 3 (lower is better) Translates to: APLPTLSRFLALAFSCTGSNPFV*QDRPGQ Trigger: CTGTCCTGGTCTGTCTTGCAAGACAAAGGGATTTGA...CCCAGTACAGGAGAATGCCAGGGCCAAGAAGCGGGAGAGGGTGGGTAGGGGAGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065785.4 |
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| 3UTR CCA 72 bp | CCTCTCCCGCTTCTTGGCCCTGGCATTCTCCTGTACTaGGGACAGGGCTACTTTATGAGCAACTATAGGACC | + |
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Preference number: 3 (lower is better) Translates to: PLPLLGPGILLY*GQGYFMSNYRT Trigger: GGTCCTATAGTTGCTCATAAAGTAGCCCTGTCCCCAGTACAGGAGAATGCCAGGGCCAAGAAGCGGGAGAGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065785.4 |
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| 3UTR TCA 72 bp | GCGGGTGTGAAGAATCTTTTCAAGCAGTCCAAACACTaGGACCCAGCGGAAGCCCTCAAATCCCTTTGTCTT | + |
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Preference number: 3 (lower is better) Translates to: AGVKNLFKQSKH*DPAEALKSLCL Trigger: AAGACAAAGGGATTTGAGGGCTTCCGCTGGGTCTCAGTGTTTGGACTGCTTGAAAAGATTCTTCACACCCGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065785.4 |
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| CDS-3UTR CCA 90 bp | TCCCGACCTGCTCCCCTACCCACCCTCTCCCGCTTCTTGGCCCTGGCATTCTCCGCCAGCCACAGGCAGTaGCAGCCGTGGGCAGCCAAA | + |
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Preference number: 4 (lower is better) Translates to: SRPAPLPTLSRFLALAFSASHRQ*QPWAAK Trigger: TTTGGCTGCCCACGGCTGCCACTGCCTGTGGCTGGC...GGAGAATGCCAGGGCCAAGAAGCGGGAGAGGGTGGGTAGGGGAGCAGGTCGGGA 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065785.4 |
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| CDS-3UTR CCA 90 bp | TCCCGACCTGCTCCCCTACCCACCCTCTCCCGCTTCTTGGCCCTGGCATTCTCCCCCAGGCCCACTGGGTaGGGGCAATACCATGGGCAG | + |
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Preference number: 4 (lower is better) Translates to: SRPAPLPTLSRFLALAFSPRPTG*GQYHGQ Trigger: CTGCCCATGGTATTGCCCCCACCCAGTGGGCCTGGG...GGAGAATGCCAGGGCCAAGAAGCGGGAGAGGGTGGGTAGGGGAGCAGGTCGGGA 67% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000065785.4 |
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| CDS-3UTR CCA 90 bp | TCCTCCCGACCTGCTCCCCTACCCACCCTCTCCCGCTTCTTGGCCCTGGCATTCGCTGGACCTCTGCCCTaGAGGCCACAGAGTGGAACC | + |
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Preference number: 4 (lower is better) Translates to: SSRPAPLPTLSRFLALAFAGPLP*RPQSGT Trigger: GGTTCCACTCTGTGGCCTCCAGGGCAGAGGTCCAGC...GAATGCCAGGGCCAAGAAGCGGGAGAGGGTGGGTAGGGGAGCAGGTCGGGAGGA 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065785.4 |
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| CDS-3UTR GCA 90 bp | GCTCCCCTACCCACCCTCTCCCGCTTCTTGGCCCTGGCATTCTCCTGTACTGGGTGTCCCAGTGTGAAGTaGCCAGGCCCACTGGGTGGG | + |
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Preference number: 4 (lower is better) Translates to: APLPTLSRFLALAFSCTGCPSVK*PGPLGG Trigger: CCCACCCAGTGGGCCTGGGCACTTCACACTGGGACA...CCCAGTACAGGAGAATGCCAGGGCCAAGAAGCGGGAGAGGGTGGGTAGGGGAGC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065785.4 |
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| CDS-3UTR GCA 90 bp | CCCTACCCACCCTCTCCCGCTTCTTGGCCCTGGCATTCTCCTGTACTGGGGACAAGCCTGCTGGACCTCTaGCCTGGAGGCCACAGAGTG | + |
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Preference number: 4 (lower is better) Translates to: PYPPSPASWPWHSPVLGTSLLDL*PGGHRV Trigger: CACTCTGTGGCCTCCAGGGCAGAGGTCCAGCAGGCT...TGTCCCCAGTACAGGAGAATGCCAGGGCCAAGAAGCGGGAGAGGGTGGGTAGGG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065785.4 |
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| CDS-3UTR TCA 90 bp | TCCCGACCTGCTCCCCTACCCACCCTCTCCCGCTTCTTGGCCCTGGCATTCTCCCAATACCATGGGCAGTaGGTTGCTGCCCCTCTCATG | + |
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Preference number: 4 (lower is better) Translates to: SRPAPLPTLSRFLALAFSQYHGQ*VAAPLM Trigger: CATGAGAGGGGCAGCAACTCACTGCCCATGGTATTG...GGAGAATGCCAGGGCCAAGAAGCGGGAGAGGGTGGGTAGGGGAGCAGGTCGGGA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000065785.4 |
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| CDS-3UTR GCA 90 bp | GCTCCCCTACCCACCCTCTCCCGCTTCTTGGCCCTGGCATTCTCCTGTACTGGGAGGCAAATGGGACACTaGAGCTGGTCCTGGAGTTCC | + |
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Preference number: 4 (lower is better) Translates to: APLPTLSRFLALAFSCTGRQMGH*SWSWSS Trigger: GGAACTCCAGGACCAGCTGCAGTGTCCCATTTGCCT...CCCAGTACAGGAGAATGCCAGGGCCAAGAAGCGGGAGAGGGTGGGTAGGGGAGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065785.4 |
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| CDS-3UTR GCA 90 bp | CCGACCTGCTCCCCTACCCACCCTCTCCCGCTTCTTGGCCCTGGCATTCTCCTGCCTTCAGCTCAGATATaGGGCCTGCAAGCTCTTCCT | + |
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Preference number: 4 (lower is better) Translates to: PTCSPTHPLPLLGPGILLPSAQI*GLQALP Trigger: AGGAAGAGCTTGCAGGCCGCATATCTGAGCTGAAGG...CAGGAGAATGCCAGGGCCAAGAAGCGGGAGAGGGTGGGTAGGGGAGCAGGTCGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065785.4 |
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| CDS-3UTR GCA 90 bp | TCCCGACCTGCTCCCCTACCCACCCTCTCCCGCTTCTTGGCCCTGGCATTCTCCTCGTCCACCAGGTGGTaGAATTCCTGGAACTCCCTT | + |
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Preference number: 4 (lower is better) Translates to: SRPAPLPTLSRFLALAFSSSTRW*NSWNSL Trigger: AAGGGAGTTCCAGGAATTGCACCACCTGGTGGACGA...GGAGAATGCCAGGGCCAAGAAGCGGGAGAGGGTGGGTAGGGGAGCAGGTCGGGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065785.4 |
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| CDS-3UTR GCA 90 bp | CTGCTCCCCTACCCACCCTCTCCCGCTTCTTGGCCCTGGCATTCTCCTGTACTGGGGACTTGTTCAGCTTaGCTTTGCGGCTGGCTGTGC | + |
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Preference number: 4 (lower is better) Translates to: LLPYPPSPASWPWHSPVLGTCSA*LCGWLC Trigger: GCACAGCCAGCCGCAAAGGCAAGCTGAACAAGTCCC...CAGTACAGGAGAATGCCAGGGCCAAGAAGCGGGAGAGGGTGGGTAGGGGAGCAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000065785.4 |
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| CDS-3UTR CCA 90 bp | CTGCTCCCCTACCCACCCTCTCCCGCTTCTTGGCCCTGGCATTCTCCTGTACTGATGGGACACTGCAGCTaGTCCTGGAGTTCCGGCACA | + |
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Preference number: 4 (lower is better) Translates to: LLPYPPSPASWPWHSPVLMGHCS*SWSSGT Trigger: TGTGCCGGAACTCCAGGACCAGCTGCAGTGTCCCAT...CAGTACAGGAGAATGCCAGGGCCAAGAAGCGGGAGAGGGTGGGTAGGGGAGCAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065785.4 |
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| CDS-3UTR CCA 90 bp | CCGACCTGCTCCCCTACCCACCCTCTCCCGCTTCTTGGCCCTGGCATTCTCCTGTCGGAGTCCAGGTGTTaGGACAAGTTATCCAGGCAG | + |
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Preference number: 4 (lower is better) Translates to: PTCSPTHPLPLLGPGILLSESRC*DKLSRQ Trigger: CTGCCTGGATAACTTGTCCCAACACCTGGACTCCGA...CAGGAGAATGCCAGGGCCAAGAAGCGGGAGAGGGTGGGTAGGGGAGCAGGTCGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065785.4 |
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| CDS-3UTR CCA 90 bp | GCTCCCCTACCCACCCTCTCCCGCTTCTTGGCCCTGGCATTCTCCTGTACTGGGCAGCTTGAGAGATGCTaGAGCTGGCAGAACCTTCCG | + |
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Preference number: 4 (lower is better) Translates to: APLPTLSRFLALAFSCTGQLERC*SWQNLP Trigger: CGGAAGGTTCTGCCAGCTCCAGCATCTCTCAAGCTG...CCCAGTACAGGAGAATGCCAGGGCCAAGAAGCGGGAGAGGGTGGGTAGGGGAGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065785.4 |
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| CDS-3UTR GCA 90 bp | GCTCCCCTACCCACCCTCTCCCGCTTCTTGGCCCTGGCATTCTCCTGTACTGGGGCAAGGAGGCCACAATaGACCACTGTGTTGCCCTTA | + |
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Preference number: 4 (lower is better) Translates to: APLPTLSRFLALAFSCTGARRPQ*TTVLPL Trigger: TAAGGGCAACACAGTGGTGCATTGTGGCCTCCTTGC...CCCAGTACAGGAGAATGCCAGGGCCAAGAAGCGGGAGAGGGTGGGTAGGGGAGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000065785.4 |
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| CDS-3UTR CCA 90 bp | CCCTACCCACCCTCTCCCGCTTCTTGGCCCTGGCATTCTCCTGTACTGGGGACAAGTTTGATGTCAGCCTaGTGGAGAGCTGGCTTGAAG | + |
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Preference number: 4 (lower is better) Translates to: PYPPSPASWPWHSPVLGTSLMSA*WRAGLK Trigger: CTTCAAGCCAGCTCTCCACCAGGCTGACATCAAACT...TGTCCCCAGTACAGGAGAATGCCAGGGCCAAGAAGCGGGAGAGGGTGGGTAGGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065785.4 |
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| CDS-3UTR CCA 90 bp | CTGGGGACACGCGGGTGTGAAGAATCTTTTCAAGCAGTCCAAACACTGAGACCCGTGGGGGCAATACCATaGGCAGTGAGTTGCTGCCCC | + |
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Preference number: 4 (lower is better) Translates to: LGTRGCEESFQAVQTLRPVGAIP*AVSCCP Trigger: GGGGCAGCAACTCACTGCCCATGGTATTGCCCCCAC...GGGTCTCAGTGTTTGGACTGCTTGAAAAGATTCTTCACACCCGCGTGTCCCCAG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000065785.4 |
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| CDS-3UTR GCA 90 bp | CTGGGGACACGCGGGTGTGAAGAATCTTTTCAAGCAGTCCAAACACTGAGACCCTCCTCCACGTTCCTGTaGTCCTCCTTCAGCTCAGAT | + |
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Preference number: 4 (lower is better) Translates to: LGTRGCEESFQAVQTLRPSSTFL*SSFSSD Trigger: ATCTGAGCTGAAGGAGGAGCACAGGAACGTGGAGGA...GGGTCTCAGTGTTTGGACTGCTTGAAAAGATTCTTCACACCCGCGTGTCCCCAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000065785.4 |
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| CDS-3UTR CCA 90 bp | CTGGGGACACGCGGGTGTGAAGAATCTTTTCAAGCAGTCCAAACACTGAGACCCTTGATGTCAGCCTGGTaGAGAGCTGGCTTGAAGGAG | + |
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Preference number: 4 (lower is better) Translates to: LGTRGCEESFQAVQTLRPLMSAW*RAGLKE Trigger: CTCCTTCAAGCCAGCTCTCCACCAGGCTGACATCAA...GGGTCTCAGTGTTTGGACTGCTTGAAAAGATTCTTCACACCCGCGTGTCCCCAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000065785.4 |
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| CDS-3UTR TCA 90 bp | CTGGGGACACGCGGGTGTGAAGAATCTTTTCAAGCAGTCCAAACACTGAGACCCCACAGAGACCACAGATaGATTCCTGGTCTTTCTCGC | + |
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Preference number: 4 (lower is better) Translates to: LGTRGCEESFQAVQTLRPHRDHR*IPGLSR Trigger: GCGAGAAAGACCAGGAATTCATCTGTGGTCTCTGTG...GGGTCTCAGTGTTTGGACTGCTTGAAAAGATTCTTCACACCCGCGTGTCCCCAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000065785.4 |
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| CDS-3UTR GCA 90 bp | AATGTTCTGGGGACACGCGGGTGTGAAGAATCTTTTCAAGCAGTCCAAACACTGCCATGGGCAGTGAGTTaGTGCCCCTCTCATGCCAAC | + |
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Preference number: 4 (lower is better) Translates to: NVLGTRGCEESFQAVQTLPWAVS*CPSHAN Trigger: GTTGGCATGAGAGGGGCAGCAACTCACTGCCCATGG...CAGTGTTTGGACTGCTTGAAAAGATTCTTCACACCCGCGTGTCCCCAGAACATT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000065785.4 |
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| CDS-3UTR CCA 90 bp | AATGTTCTGGGGACACGCGGGTGTGAAGAATCTTTTCAAGCAGTCCAAACACTGCTGGAGGCCACAGAGTaGAACCGGATGAACTCATGG | + |
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Preference number: 4 (lower is better) Translates to: NVLGTRGCEESFQAVQTLLEATE*NRMNSW Trigger: CCATGAGTTCATCCGGTTCCACTCTGTGGCCTCCAG...CAGTGTTTGGACTGCTTGAAAAGATTCTTCACACCCGCGTGTCCCCAGAACATT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000065785.4 |
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| CDS-3UTR CCA 90 bp | TCTTTATATACATTTCAAATGCTACCCCAAAAAGTTCCCTATACCCTCCTCCCGAGCGCTCGGGTTGGCTaGCTCGTCTCTGGGCAAGGA | + |
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Preference number: 4 (lower is better) Translates to: SLYTFQMLPQKVPYTLLPSARVG*LVSGQG Trigger: TCCTTGCCCAGAGACGAGCCAGCCAACCCGAGCGCT...CGGGAGGAGGGTATAGGGAACTTTTTGGGGTAGCATTTGAAATGTATATAAAGA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000065785.4 |
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| CDS-3UTR TCA 90 bp | TCTTTATATACATTTCAAATGCTACCCCAAAAAGTTCCCTATACCCTCCTCCCGATACCTGTCCCAGTGTaGAGTGCCCAGGCCCACTGG | + |
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Preference number: 4 (lower is better) Translates to: SLYTFQMLPQKVPYTLLPIPVPV*SAQAHW Trigger: CCAGTGGGCCTGGGCACTTCACACTGGGACAGGTAT...CGGGAGGAGGGTATAGGGAACTTTTTGGGGTAGCATTTGAAATGTATATAAAGA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000065785.4 |
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| CDS-3UTR GCA 90 bp | AATGTTCTGGGGACACGCGGGTGTGAAGAATCTTTTCAAGCAGTCCAAACACTGTTGCTGCCCCTCTCATaGCAACATGTGTCCAGGATA | + |
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Preference number: 4 (lower is better) Translates to: NVLGTRGCEESFQAVQTLLLPLS*QHVSRI Trigger: TATCCTGGACACATGTTGGCATGAGAGGGGCAGCAA...CAGTGTTTGGACTGCTTGAAAAGATTCTTCACACCCGCGTGTCCCCAGAACATT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000065785.4 |
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| CDS-3UTR CCA 90 bp | TTCTTTATATACATTTCAAATGCTACCCCAAAAAGTTCCCTATACCCTCCTCCCTCGAAGCGCTCGGGTTaGCTGGCTCGTCTCTGGGCA | + |
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Preference number: 4 (lower is better) Translates to: FFIYISNATPKSSLYPPPSKRSG*LARLWA Trigger: TGCCCAGAGACGAGCCAGCCAACCCGAGCGCTTCGA...GGGAGGAGGGTATAGGGAACTTTTTGGGGTAGCATTTGAAATGTATATAAAGAA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000065785.4 |
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| CDS-3UTR TCA 90 bp | TCTTTATATACATTTCAAATGCTACCCCAAAAAGTTCCCTATACCCTCCTCCCGTCCACACGGTCAGTTTaGTGTCAGCCTGGTGGAGAG | + |
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Preference number: 4 (lower is better) Translates to: SLYTFQMLPQKVPYTLLPSTRSV*CQPGGE Trigger: CTCTCCACCAGGCTGACATCAAACTGACCGTGTGGA...CGGGAGGAGGGTATAGGGAACTTTTTGGGGTAGCATTTGAAATGTATATAAAGA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000065785.4 |
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| CDS-3UTR GCA 90 bp | TCTTTATATACATTTCAAATGCTACCCCAAAAAGTTCCCTATACCCTCCTCCCGCAAGCTCTTCCTTCATaGGGCTGTAGACGGTGGAGA | + |
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Preference number: 4 (lower is better) Translates to: SLYTFQMLPQKVPYTLLPQALPS*GCRRWR Trigger: TCTCCACCGTCTACAGCCGCATGAAGGAAGAGCTTG...CGGGAGGAGGGTATAGGGAACTTTTTGGGGTAGCATTTGAAATGTATATAAAGA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000065785.4 |
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| CDS-3UTR CCA 90 bp | TTCTTTATATACATTTCAAATGCTACCCCAAAAAGTTCCCTATACCCTCCTCCCAGCCTGGTGGAGAGCTaGCTTGAAGGAGATGGGACT | + |
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Preference number: 4 (lower is better) Translates to: FFIYISNATPKSSLYPPPSLVES*LEGDGT Trigger: AGTCCCATCTCCTTCAAGCCAGCTCTCCACCAGGCT...GGGAGGAGGGTATAGGGAACTTTTTGGGGTAGCATTTGAAATGTATATAAAGAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000065785.4 |
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| CDS-3UTR CAA 90 bp | TCCCGACCTGCTCCCCTACCCACCCTCTCCCGCTTCTTGGCCCTGGCATTCTCCCGGCTGGCTGTGCCCTaGATGACCCCCAAGCGCCAG | + |
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Preference number: 5 (lower is better) Translates to: SRPAPLPTLSRFLALAFSRLAVP*MTPKRQ Trigger: CTGGCGCTTGGGGGTCATCAAGGGCACAGCCAGCCG...GGAGAATGCCAGGGCCAAGAAGCGGGAGAGGGTGGGTAGGGGAGCAGGTCGGGA 68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000065785.4 |
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| CDS-3UTR CAA 90 bp | CCCTACCCACCCTCTCCCGCTTCTTGGCCCTGGCATTCTCCTGTACTGGGGACAGTCGAAGCGCTCGGGTaGGCTGGCTCGTCTCTGGGC | + |
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Preference number: 5 (lower is better) Translates to: PYPPSPASWPWHSPVLGTVEALG*AGSSLG Trigger: GCCCAGAGACGAGCCAGCCAACCCGAGCGCTTCGAC...TGTCCCCAGTACAGGAGAATGCCAGGGCCAAGAAGCGGGAGAGGGTGGGTAGGG 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065785.4 |
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| CDS GCA 90 bp | AAGCGCTCGGGTTGGCTGGCTCGTCTCTGGGCAAGGAGGCCACAATaGACCACTGTGTTGCCCTTAGAGAGCTCCAGCAGAGGGTGGGCA | + |
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Preference number: 5 (lower is better) Translates to: KRSGWLARLWARRPQ*TTVLPLESSSRGWA Trigger: TGCCCACCCTCTGCTGGAGCTCTCTAAGGGCAACACAGTGGTGCATTGTGGCCTCCTTGCCCAGAGACGAGCCAGCCAACCCGAGCGCTT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000065785.4 ENSMUST00000111180.9 |
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| CDS-3UTR CAA 90 bp | CCCTACCCACCCTCTCCCGCTTCTTGGCCCTGGCATTCTCCTGTACTGGGGACAAAGCGCCAGTCACTCTaGCTCCCCACCACCACTTCC | + |
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Preference number: 5 (lower is better) Translates to: PYPPSPASWPWHSPVLGTKRQSL*LPTTTS Trigger: GGAAGTGGTGGTGGGGAGCAAGAGTGACTGGCGCTT...TGTCCCCAGTACAGGAGAATGCCAGGGCCAAGAAGCGGGAGAGGGTGGGTAGGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000065785.4 |
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| CDS GCA 90 bp | GGCTTGAAGGAGATGGGACTGAAGACGCCTTCCAAAGGCCGAGCCTaGTGGACCTCTGCCCTGGAGGCCACAGAGTGGAACCGGATGAAC | + |
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Preference number: 5 (lower is better) Translates to: GLKEMGLKTPSKGRA*WTSALEATEWNRMN Trigger: GTTCATCCGGTTCCACTCTGTGGCCTCCAGGGCAGAGGTCCAGCAGGCTCGGCCTTTGGAAGGCGTCTTCAGTCCCATCTCCTTCAAGCC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065785.4 |
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| CDS TCA 90 bp | GAGCCTGCTGGACCTCTGCCCTGGAGGCCACAGAGTGGAACCGGATaGACTCATGGTGACTCTCGTTCCCAAACTGCTCCAGCACCTGCT | + |
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Preference number: 5 (lower is better) Translates to: EPAGPLPWRPQSGTG*THGDSRSQTAPAPA Trigger: AGCAGGTGCTGGAGCAGTTTGGGAACGAGAGTCACCATGAGTTCATCCGGTTCCACTCTGTGGCCTCCAGGGCAGAGGTCCAGCAGGCTC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065785.4 |
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| CDS GCA 90 bp | GATGGGACTGAAGACGCCTTCCAAAGGCCGAGCCTGCTGGACCTCTaGCCTGGAGGCCACAGAGTGGAACCGGATGAACTCATGGTGACT | + |
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Preference number: 5 (lower is better) Translates to: DGTEDAFQRPSLLDL*PGGHRVEPDELMVT Trigger: AGTCACCATGAGTTCATCCGGTTCCACTCTGTGGCCTCCAGGGCAGAGGTCCAGCAGGCTCGGCCTTTGGAAGGCGTCTTCAGTCCCATC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065785.4 |
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| CDS GCA 90 bp | GCCTCATACACCCGACCCTCTTTCAGGCCAATTAGCCACACACCGTaGTCTGGGGACTTGTTCAGCTTGCCTTTGCGGCTGGCTGTGCCC | + |
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Preference number: 5 (lower is better) Translates to: ASYTRPSFRPISHTP*SGDLFSLPLRLAVP Trigger: GGGCACAGCCAGCCGCAAAGGCAAGCTGAACAAGTCCCCAGAGCACGGTGTGTGGCTAATTGGCCTGAAAGAGGGTCGGGTGTATGAGGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000065785.4 ENSMUST00000111180.9 |
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| CDS CCA 90 bp | CCACAATGCACCACTGTGTTGCCCTTAGAGAGCTCCAGCAGAGGGTaGGCAGTAGCCGGGTCCAGCTTGAGAGATGCTGGAGCTGGCAGA | + |
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Preference number: 5 (lower is better) Translates to: PQCTTVLPLESSSRG*AVAGSSLRDAGAGR Trigger: TCTGCCAGCTCCAGCATCTCTCAAGCTGGACCCGGCTACTGCCCACCCTCTGCTGGAGCTCTCTAAGGGCAACACAGTGGTGCATTGTGG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000065785.4 ENSMUST00000111180.9 |
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| CDS-3UTR CAA 90 bp | GCTCCCCTACCCACCCTCTCCCGCTTCTTGGCCCTGGCATTCTCCTGTACTGGGTTCCACACGGTCAGTTaGATGTCAGCCTGGTGGAGA | + |
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Preference number: 5 (lower is better) Translates to: APLPTLSRFLALAFSCTGFHTVS*MSAWWR Trigger: TCTCCACCAGGCTGACATCAAACTGACCGTGTGGAA...CCCAGTACAGGAGAATGCCAGGGCCAAGAAGCGGGAGAGGGTGGGTAGGGGAGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065785.4 |
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| CDS-3UTR CAA 90 bp | GCTCCCCTACCCACCCTCTCCCGCTTCTTGGCCCTGGCATTCTCCTGTACTGGGGCCCTGGAAGTCAGCTaGGAAAGTATAGAGTGTCCG | + |
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Preference number: 5 (lower is better) Translates to: APLPTLSRFLALAFSCTGALEVS*ESIECP Trigger: CGGACACTCTATACTTTCCAAGCTGACTTCCAGGGC...CCCAGTACAGGAGAATGCCAGGGCCAAGAAGCGGGAGAGGGTGGGTAGGGGAGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000065785.4 |
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| CDS-3UTR CAA 90 bp | CCCTACCCACCCTCTCCCGCTTCTTGGCCCTGGCATTCTCCTGTACTGGGGACAAGGATAGGGTACAGCTaGCCCTGGAAGTCAGCTTGG | + |
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Preference number: 5 (lower is better) Translates to: PYPPSPASWPWHSPVLGTRIGYS*PWKSAW Trigger: CCAAGCTGACTTCCAGGGCAAGCTGTACCCTATCCT...TGTCCCCAGTACAGGAGAATGCCAGGGCCAAGAAGCGGGAGAGGGTGGGTAGGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065785.4 |
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| CDS CCA 90 bp | GAGTCTCTTCCACACGGTCAGTTTGATGTCAGCCTGGTGGAGAGCTaGCTTGAAGGAGATGGGACTGAAGACGCCTTCCAAAGGCCGAGC | + |
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Preference number: 5 (lower is better) Translates to: ESLPHGQFDVSLVES*LEGDGTEDAFQRPS Trigger: GCTCGGCCTTTGGAAGGCGTCTTCAGTCCCATCTCCTTCAAGCCAGCTCTCCACCAGGCTGACATCAAACTGACCGTGTGGAAGAGACTC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000065785.4 ENSMUST00000111180.9 |
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| CDS-3UTR CAA 90 bp | CTGGGGACACGCGGGTGTGAAGAATCTTTTCAAGCAGTCCAAACACTGAGACCCCCCCAAGAGAAGCCCTaGCTAGCCAGGACACAGGTG | + |
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Preference number: 5 (lower is better) Translates to: LGTRGCEESFQAVQTLRPPQEKP*LARTQV Trigger: CACCTGTGTCCTGGCTAGCAAGGGCTTCTCTTGGGG...GGGTCTCAGTGTTTGGACTGCTTGAAAAGATTCTTCACACCCGCGTGTCCCCAG 57% GC, longest homopolymer 7 nt, total homopolymer stretches 15 nt. Matches the following 1 transcripts: ENSMUST00000065785.4 |
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| CDS-3UTR CAA 90 bp | CTGGGGACACGCGGGTGTGAAGAATCTTTTCAAGCAGTCCAAACACTGAGACCCGGGGACTTGTTCAGCTaGCCTTTGCGGCTGGCTGTG | + |
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Preference number: 5 (lower is better) Translates to: LGTRGCEESFQAVQTLRPGDLFS*PLRLAV Trigger: CACAGCCAGCCGCAAAGGCAAGCTGAACAAGTCCCC...GGGTCTCAGTGTTTGGACTGCTTGAAAAGATTCTTCACACCCGCGTGTCCCCAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000065785.4 |
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| CDS CCA 90 bp | ACCTTCCGGAAGAGTCTCTTCCACACGGTCAGTTTGATGTCAGCCTaGTGGAGAGCTGGCTTGAAGGAGATGGGACTGAAGACGCCTTCC | + |
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Preference number: 5 (lower is better) Translates to: TFRKSLFHTVSLMSA*WRAGLKEMGLKTPS Trigger: GGAAGGCGTCTTCAGTCCCATCTCCTTCAAGCCAGCTCTCCACCAGGCTGACATCAAACTGACCGTGTGGAAGAGACTCTTCCGGAAGGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000065785.4 ENSMUST00000111180.9 |
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| CDS CCA 90 bp | TTCCGGAAGAGTCTCTTCCACACGGTCAGTTTGATGTCAGCCTGGTaGAGAGCTGGCTTGAAGGAGATGGGACTGAAGACGCCTTCCAAA | + |
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Preference number: 5 (lower is better) Translates to: FRKSLFHTVSLMSAW*RAGLKEMGLKTPSK Trigger: TTTGGAAGGCGTCTTCAGTCCCATCTCCTTCAAGCCAGCTCTCCACCAGGCTGACATCAAACTGACCGTGTGGAAGAGACTCTTCCGGAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000065785.4 ENSMUST00000111180.9 |
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| CDS TCA 90 bp | TATAGAGTGTCCGCAGATCATCAGGACGGTCAGCGTCAAAGAACGTaGGCTCACCCTGCTCATAGTGTAAGTAGACGCCGATGCGATGAG | + |
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Preference number: 5 (lower is better) Translates to: YRVSADHQDGQRQRT*AHPAHSVSRRRCDE Trigger: CTCATCGCATCGGCGTCTACTTACACTATGAGCAGGGTGAGCTCACGTTCTTTGACGCTGACCGTCCTGATGATCTGCGGACACTCTATA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000065785.4 ENSMUST00000111180.9 |
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| CDS-3UTR CAA 90 bp | TCTTTATATACATTTCAAATGCTACCCCAAAAAGTTCCCTATACCCTCCTCCCGCCGTGCTCTGGGGACTaGTTCAGCTTGCCTTTGCGG | + |
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Preference number: 5 (lower is better) Translates to: SLYTFQMLPQKVPYTLLPPCSGD*FSLPLR Trigger: CCGCAAAGGCAAGCTGAACAAGTCCCCAGAGCACGG...CGGGAGGAGGGTATAGGGAACTTTTTGGGGTAGCATTTGAAATGTATATAAAGA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000065785.4 |
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| CDS CCA 72 bp | GCGATGAGGGTGGCCAGCCACAGGCAGTGGCAGCCGTaGGCAGCCAAAAGCCTCATACACCCGACCCTCTTT | + |
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Preference number: 6 (lower is better) Translates to: AMRVASHRQWQP*AAKSLIHPTLF Trigger: AAAGAGGGTCGGGTGTATGAGGCTTTTGGCTGCCCACGGCTGCCACTGCCTGTGGCTGGCCACCCTCATCGC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000065785.4 ENSMUST00000111180.9 |
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| CDS CAA 90 bp | TGGCTGGCTCGTCTCTGGGCAAGGAGGCCACAATGCACCACTGTGTaGCCCTTAGAGAGCTCCAGCAGAGGGTGGGCAGTAGCCGGGTCC | + |
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Preference number: 6 (lower is better) Translates to: WLARLWARRPQCTTV*PLESSSRGWAVAGS Trigger: GGACCCGGCTACTGCCCACCCTCTGCTGGAGCTCTCTAAGGGCAACACAGTGGTGCATTGTGGCCTCCTTGCCCAGAGACGAGCCAGCCA 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000065785.4 ENSMUST00000111180.9 |
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| CDS GCA 72 bp | GAGATGGGACTGAAGACGCCTTCCAAAGGCCGAGCCTaGTGGACCTCTGCCCTGGAGGCCACAGAGTGGAAC | + |
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Preference number: 6 (lower is better) Translates to: EMGLKTPSKGRA*WTSALEATEWN Trigger: GTTCCACTCTGTGGCCTCCAGGGCAGAGGTCCAGCAGGCTCGGCCTTTGGAAGGCGTCTTCAGTCCCATCTC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000065785.4 ENSMUST00000111180.9 |
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| CDS CAA 72 bp | AGCTCCAGCAGAGGGTGGGCAGTAGCCGGGTCCAGCTaGAGAGATGCTGGAGCTGGCAGAACCTTCCGGAAG | + |
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Preference number: 6 (lower is better) Translates to: SSSRGWAVAGSS*RDAGAGRTFRK Trigger: CTTCCGGAAGGTTCTGCCAGCTCCAGCATCTCTCAAGCTGGACCCGGCTACTGCCCACCCTCTGCTGGAGCT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000065785.4 ENSMUST00000111180.9 |
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| CDS CAA 72 bp | CACACACCGTGCTCTGGGGACTTGTTCAGCTTGCCTTaGCGGCTGGCTGTGCCCTTGATGACCCCCAAGCGC | + |
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Preference number: 6 (lower is better) Translates to: HTPCSGDLFSLP*RLAVPLMTPKR Trigger: GCGCTTGGGGGTCATCAAGGGCACAGCCAGCCGCAAAGGCAAGCTGAACAAGTCCCCAGAGCACGGTGTGTG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000065785.4 ENSMUST00000111180.9 |
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| CDS CAA 90 bp | GCCCTTGCTAGCCAGGACACAGGTGCTATAGTCGAAGCGCTCGGGTaGGCTGGCTCGTCTCTGGGCAAGGAGGCCACAATGCACCACTGT | + |
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Preference number: 6 (lower is better) Translates to: ALASQDTGAIVEALG*AGSSLGKEATMHHC Trigger: ACAGTGGTGCATTGTGGCCTCCTTGCCCAGAGACGAGCCAGCCAACCCGAGCGCTTCGACTATAGCACCTGTGTCCTGGCTAGCAAGGGC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000065785.4 ENSMUST00000111180.9 |
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| CDS CCA 72 bp | GGACACAGGTGCTATAGTCGAAGCGCTCGGGTTGGCTaGCTCGTCTCTGGGCAAGGAGGCCACAATGCACCA | + |
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Preference number: 6 (lower is better) Translates to: GHRCYSRSARVG*LVSGQGGHNAP Trigger: TGGTGCATTGTGGCCTCCTTGCCCAGAGACGAGCCAGCCAACCCGAGCGCTTCGACTATAGCACCTGTGTCC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000065785.4 ENSMUST00000111180.9 |
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| CDS CAA 72 bp | AGCCAGGACACAGGTGCTATAGTCGAAGCGCTCGGGTaGGCTGGCTCGTCTCTGGGCAAGGAGGCCACAATG | + |
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Preference number: 6 (lower is better) Translates to: SQDTGAIVEALG*AGSSLGKEATM Trigger: CATTGTGGCCTCCTTGCCCAGAGACGAGCCAGCCAACCCGAGCGCTTCGACTATAGCACCTGTGTCCTGGCT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000065785.4 ENSMUST00000111180.9 |
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| CDS CAA 72 bp | GACTTGTTCAGCTTGCCTTTGCGGCTGGCTGTGCCCTaGATGACCCCCAAGCGCCAGTCACTCTTGCTCCCC | + |
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Preference number: 6 (lower is better) Translates to: DLFSLPLRLAVP*MTPKRQSLLLP Trigger: GGGGAGCAAGAGTGACTGGCGCTTGGGGGTCATCAAGGGCACAGCCAGCCGCAAAGGCAAGCTGAACAAGTC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000065785.4 ENSMUST00000111180.9 |
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| CDS CAA 90 bp | CCCTTAGAGAGCTCCAGCAGAGGGTGGGCAGTAGCCGGGTCCAGCTaGAGAGATGCTGGAGCTGGCAGAACCTTCCGGAAGAGTCTCTTC | + |
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Preference number: 6 (lower is better) Translates to: PLESSSRGWAVAGSS*RDAGAGRTFRKSLF Trigger: GAAGAGACTCTTCCGGAAGGTTCTGCCAGCTCCAGCATCTCTCAAGCTGGACCCGGCTACTGCCCACCCTCTGCTGGAGCTCTCTAAGGG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000065785.4 ENSMUST00000111180.9 |
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| CDS CAA 90 bp | CCAATTAGCCACACACCGTGCTCTGGGGACTTGTTCAGCTTGCCTTaGCGGCTGGCTGTGCCCTTGATGACCCCCAAGCGCCAGTCACTC | + |
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Preference number: 6 (lower is better) Translates to: PISHTPCSGDLFSLP*RLAVPLMTPKRQSL Trigger: GAGTGACTGGCGCTTGGGGGTCATCAAGGGCACAGCCAGCCGCAAAGGCAAGCTGAACAAGTCCCCAGAGCACGGTGTGTGGCTAATTGG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000065785.4 ENSMUST00000111180.9 |
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| CDS CAA 90 bp | TTCAGGCCAATTAGCCACACACCGTGCTCTGGGGACTTGTTCAGCTaGCCTTTGCGGCTGGCTGTGCCCTTGATGACCCCCAAGCGCCAG | + |
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Preference number: 6 (lower is better) Translates to: FRPISHTPCSGDLFS*PLRLAVPLMTPKRQ Trigger: CTGGCGCTTGGGGGTCATCAAGGGCACAGCCAGCCGCAAAGGCAAGCTGAACAAGTCCCCAGAGCACGGTGTGTGGCTAATTGGCCTGAA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000065785.4 ENSMUST00000111180.9 |
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| CDS CAA 90 bp | CGACCCTCTTTCAGGCCAATTAGCCACACACCGTGCTCTGGGGACTaGTTCAGCTTGCCTTTGCGGCTGGCTGTGCCCTTGATGACCCCC | + |
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Preference number: 6 (lower is better) Translates to: RPSFRPISHTPCSGD*FSLPLRLAVPLMTP Trigger: GGGGGTCATCAAGGGCACAGCCAGCCGCAAAGGCAAGCTGAACAAGTCCCCAGAGCACGGTGTGTGGCTAATTGGCCTGAAAGAGGGTCG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000065785.4 ENSMUST00000111180.9 |
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| CDS GCA 72 bp | CAGAGGGTGGGCAGTAGCCGGGTCCAGCTTGAGAGATaGTGGAGCTGGCAGAACCTTCCGGAAGAGTCTCTT | + |
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Preference number: 6 (lower is better) Translates to: QRVGSSRVQLER*WSWQNLPEESL Trigger: AAGAGACTCTTCCGGAAGGTTCTGCCAGCTCCAGCATCTCTCAAGCTGGACCCGGCTACTGCCCACCCTCTG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000065785.4 ENSMUST00000111180.9 |
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| CDS GCA 72 bp | GGTTGGCTGGCTCGTCTCTGGGCAAGGAGGCCACAATaGACCACTGTGTTGCCCTTAGAGAGCTCCAGCAGA | + |
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Preference number: 6 (lower is better) Translates to: GWLARLWARRPQ*TTVLPLESSSR Trigger: TCTGCTGGAGCTCTCTAAGGGCAACACAGTGGTGCATTGTGGCCTCCTTGCCCAGAGACGAGCCAGCCAACC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000065785.4 ENSMUST00000111180.9 |
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| CDS CCA 72 bp | ACCACTGTGTTGCCCTTAGAGAGCTCCAGCAGAGGGTaGGCAGTAGCCGGGTCCAGCTTGAGAGATGCTGGA | + |
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Preference number: 6 (lower is better) Translates to: TTVLPLESSSRG*AVAGSSLRDAG Trigger: TCCAGCATCTCTCAAGCTGGACCCGGCTACTGCCCACCCTCTGCTGGAGCTCTCTAAGGGCAACACAGTGGT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000065785.4 ENSMUST00000111180.9 |
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| CDS TCA 72 bp | GAGACATTAGGCGGGGAGCTGCTGCAGTCTACTGACTaGCGACACACAGGACAGCATAGCTCGGAGTCCAGG | + |
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Preference number: 6 (lower is better) Translates to: ETLGGELLQSTD*RHTGQHSSESR Trigger: CCTGGACTCCGAGCTATGCTGTCCTGTGTGTCGTCAGTCAGTAGACTGCAGCAGCTCCCCGCCTAATGTCTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000065785.4 ENSMUST00000111180.9 |
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| CDS TCA 72 bp | GGACCTCTGCCCTGGAGGCCACAGAGTGGAACCGGATaGACTCATGGTGACTCTCGTTCCCAAACTGCTCCA | + |
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Preference number: 6 (lower is better) Translates to: GPLPWRPQSGTG*THGDSRSQTAP Trigger: TGGAGCAGTTTGGGAACGAGAGTCACCATGAGTTCATCCGGTTCCACTCTGTGGCCTCCAGGGCAGAGGTCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065785.4 |
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| CDS GCA 72 bp | ACCCGACCCTCTTTCAGGCCAATTAGCCACACACCGTaGTCTGGGGACTTGTTCAGCTTGCCTTTGCGGCTG | + |
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Preference number: 6 (lower is better) Translates to: TRPSFRPISHTP*SGDLFSLPLRL Trigger: CAGCCGCAAAGGCAAGCTGAACAAGTCCCCAGAGCACGGTGTGTGGCTAATTGGCCTGAAAGAGGGTCGGGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000065785.4 ENSMUST00000111180.9 |
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| CDS CAA 72 bp | TTCAGGCCAATTAGCCACACACCGTGCTCTGGGGACTaGTTCAGCTTGCCTTTGCGGCTGGCTGTGCCCTTG | + |
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Preference number: 6 (lower is better) Translates to: FRPISHTPCSGD*FSLPLRLAVPL Trigger: CAAGGGCACAGCCAGCCGCAAAGGCAAGCTGAACAAGTCCCCAGAGCACGGTGTGTGGCTAATTGGCCTGAA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000065785.4 ENSMUST00000111180.9 |
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| CDS TCA 72 bp | TCCGCAGATCATCAGGACGGTCAGCGTCAAAGAACGTaGGCTCACCCTGCTCATAGTGTAAGTAGACGCCGA | + |
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Preference number: 6 (lower is better) Translates to: SADHQDGQRQRT*AHPAHSVSRRR Trigger: TCGGCGTCTACTTACACTATGAGCAGGGTGAGCTCACGTTCTTTGACGCTGACCGTCCTGATGATCTGCGGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000065785.4 ENSMUST00000111180.9 |
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| CDS CAA 90 bp | CCAACATGTGTCCAGGATAGGGTACAGCTTGCCCTGGAAGTCAGCTaGGAAAGTATAGAGTGTCCGCAGATCATCAGGACGGTCAGCGTC | + |
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Preference number: 6 (lower is better) Translates to: PTCVQDRVQLALEVS*ESIECPQIIRTVSV Trigger: GACGCTGACCGTCCTGATGATCTGCGGACACTCTATACTTTCCAAGCTGACTTCCAGGGCAAGCTGTACCCTATCCTGGACACATGTTGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000065785.4 ENSMUST00000111180.9 |
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| CDS CCA 72 bp | AAGAGTCTCTTCCACACGGTCAGTTTGATGTCAGCCTaGTGGAGAGCTGGCTTGAAGGAGATGGGACTGAAG | + |
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Preference number: 6 (lower is better) Translates to: KSLFHTVSLMSA*WRAGLKEMGLK Trigger: CTTCAGTCCCATCTCCTTCAAGCCAGCTCTCCACCAGGCTGACATCAAACTGACCGTGTGGAAGAGACTCTT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000065785.4 ENSMUST00000111180.9 |
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| CDS CAA 72 bp | GACTCATTAATAATCCGGGTCCTGTTGTTCACCAGTTaGCCGATGTGCTCCTCCACGTTCCTGTGCTCCTCC | + |
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Preference number: 6 (lower is better) Translates to: DSLIIRVLLFTS*PMCSSTFLCSS Trigger: GGAGGAGCACAGGAACGTGGAGGAGCACATCGGCAAACTGGTGAACAACAGGACCCGGATTATTAATGAGTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000065785.4 ENSMUST00000111180.9 |
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