Pregenerated sensors for TRIM5 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000060441Ensembl transcript IDs: ENSMUST00000051795.10, ENSMUST00000098179.9
Found 81 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CTCAGTGGTGGAGCACCTCCTCAGGGGTGGAGCACCTCCTCACCATaGACAAGGCCTTGGCTTCCACCTCTGGCGCAAAGAATAAGAGAA | + |
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Preference number: 1 (lower is better) Translates to: LSGGAPPQGWSTSSP*TRPWLPPLAQRIRE Trigger: TTCTCTTATTCTTTGCGCCAGAGGTGGAAGCCAAGGCCTTGTGCATGGTGAGGAGGTGCTCCACCCCTGAGGAGGTGCTCCACCACTGAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098179.9 |
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| 3UTR GCA 90 bp | GTTGGCTTCAAATACAGAGCAATCTTCCTGCCACAGCTTCCCAGATaGAGGACGGCAGATATGAGCTCCCATGCAAGGTTCTGTTGCACG | + |
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Preference number: 1 (lower is better) Translates to: VGFKYRAIFLPQLPR*RTADMSSHARFCCT Trigger: CGTGCAACAGAACCTTGCATGGGAGCTCATATCTGCCGTCCTGCATCTGGGAAGCTGTGGCAGGAAGATTGCTCTGTATTTGAAGCCAAC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098179.9 |
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| 3UTR TCA 90 bp | GCTCTTCAAAAATATGGAATGCTTCATAAACTCGCATGTCATCCATaGGCAGGGGCCATATTAACATTCCCTGATCATTCTACTTTGGGC | + |
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Preference number: 1 (lower is better) Translates to: ALQKYGMLHKLACHP*AGAILTFPDHSTLG Trigger: GCCCAAAGTAGAATGATCAGGGAATGTTAATATGGCCCCTGCTCATGGATGACATGCGAGTTTATGAAGCATTCCATATTTTTGAAGAGC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000098179.9 |
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| 3UTR TCA 90 bp | CCACAGATTCCTACCTATAATTTTCAGAATGAATGGACAAGTTGTTaGAGATCTTTCTTTAATCTTCTTTCATTGATGGGCAGGATGAAG | + |
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Preference number: 1 (lower is better) Translates to: PQIPTYNFQNEWTSC*RSFFNLLSLMGRMK Trigger: CTTCATCCTGCCCATCAATGAAAGAAGATTAAAGAAAGATCTTCAACAACTTGTCCATTCATTCTGAAAATTATAGGTAGGAATCTGTGG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098179.9 |
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| 3UTR-3UTR CCA 90 bp | ACAATTTGTGTTTGTGTACATGTCTGGGCCTCTACATGCTACAACATATGTGTGGCACCTCCTCAGGGGTaGAGCACCTCCTCACCATGC | + |
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Preference number: 2 (lower is better) Translates to: TICVCVHVWASTCYNICVAPPQG*STSSPC Trigger: GCATGGTGAGGAGGTGCTCCACCCCTGAGGAGGTGC...CACACATATGTTGTAGCATGTAGAGGCCCAGACATGTACACAAACACAAATTGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098179.9 |
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| 3UTR-3UTR TCA 90 bp | CTCCTCACCATGCACAAGGCCTTGGCTTCCACCTCTGGCGCAAAGAATAAGAGAAAAACTGAAAGAAACTaGGAAGAATCTGACCTAGAG | + |
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Preference number: 2 (lower is better) Translates to: LLTMHKALASTSGAKNKRKTERN*EESDLE Trigger: CTCTAGGTCAGATTCTTCTCAGTTTCTTTCAGTTTT...TCTCTTATTCTTTGCGCCAGAGGTGGAAGCCAAGGCCTTGTGCATGGTGAGGAG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000098179.9 |
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| 3UTR-3UTR GCA 90 bp | CCAGGCTTGTTGGCAAGAACTATTTCCCACTGGCCCATTTCTCATACTGGCTTGCTTTTTCTTTCCCCCTaGCTCCTCTCTAACATGATT | + |
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Preference number: 2 (lower is better) Translates to: PGLLARTISHWPISHTGLLFLSP*LLSNMI Trigger: AATCATGTTAGAGAGGAGGCAGGGGGAAAGAAAAAG...CAAGCCAGTATGAGAAATGGGCCAGTGGGAAATAGTTCTTGCCAACAAGCCTGG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000098179.9 |
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| 3UTR-3UTR TCA 90 bp | GGCCTCTACATGCTACAACATATGTGTGGAAGTCAGGTGCAGGGAATTGAACTCATGAGCTCAGGCATATaGTATACATATCAGAGCCAG | + |
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Preference number: 2 (lower is better) Translates to: GLYMLQHMCGSQVQGIELMSSGI*YTYQSQ Trigger: CTGGCTCTGATATGTATATCATATGCCTGAGCTCAT...GAGTTCAATTCCCTGCACCTGACTTCCACACATATGTTGTAGCATGTAGAGGCC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098179.9 |
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| 3UTR-3UTR TCA 90 bp | CAATTTGTGTTTGTGTACATGTCTGGGCCTCTACATGCTACAACATATGTGTGGCTCGCATGTCATCCATaGGCAGGGGCCATATTAACA | + |
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Preference number: 2 (lower is better) Translates to: QFVFVYMSGPLHATTYVWLACHP*AGAILT Trigger: TGTTAATATGGCCCCTGCTCATGGATGACATGCGAG...CCACACATATGTTGTAGCATGTAGAGGCCCAGACATGTACACAAACACAAATTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098179.9 |
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| 3UTR-3UTR CCA 90 bp | CACACACACACACACACACATGGTACCTTATTCATTTGGGGTCCTTATTGTGACAGTGCCCAGGCTTGTTaGCAAGAACTATTTCCCACT | + |
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Preference number: 2 (lower is better) Translates to: HTHTHTHGTLFIWGPYCDSAQAC*QELFPT Trigger: AGTGGGAAATAGTTCTTGCCAACAAGCCTGGGCACT...GTCACAATAAGGACCCCAAATGAATAAGGTACCATGTGTGTGTGTGTGTGTGTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098179.9 |
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| 3UTR-3UTR TCA 90 bp | ACAATTTGTGTTTGTGTACATGTCTGGGCCTCTACATGCTACAACATATGTGTGGGCACATATGATGCCTaGGCAAGAACACAGTATGCC | + |
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Preference number: 2 (lower is better) Translates to: TICVCVHVWASTCYNICVGTYDA*ARTQYA Trigger: GGCATACTGTGTTCTTGCTCAGGCATCATATGTGCC...CACACATATGTTGTAGCATGTAGAGGCCCAGACATGTACACAAACACAAATTGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098179.9 |
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| 3UTR-3UTR TCA 90 bp | GGCCTCTACATGCTACAACATATGTGTGGAAGTCAGGTGCAGGGAATTGAACTCCATATTAACATTCCCTaGTCATTCTACTTTGGGCAC | + |
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Preference number: 2 (lower is better) Translates to: GLYMLQHMCGSQVQGIELHINIP*SFYFGH Trigger: GTGCCCAAAGTAGAATGATCAGGGAATGTTAATATG...GAGTTCAATTCCCTGCACCTGACTTCCACACATATGTTGTAGCATGTAGAGGCC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098179.9 |
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| 3UTR-3UTR TCA 90 bp | ACAATTTGTGTTTGTGTACATGTCTGGGCCTCTACATGCTACAACATATGTGTGTGTTATCTTACACAATaGGCACTCAGGCACTTTTCC | + |
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Preference number: 2 (lower is better) Translates to: TICVCVHVWASTCYNICVCYLTQ*ALRHFS Trigger: GGAAAAGTGCCTGAGTGCTCATTGTGTAAGATAACA...CACACATATGTTGTAGCATGTAGAGGCCCAGACATGTACACAAACACAAATTGT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098179.9 |
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| 3UTR-3UTR CCA 90 bp | TGTTTATTTTCCCATGGTTTCATGGGACACTATAACACAGCATGTATCTCACAGAGAACTATTTCCCACTaGCCCATTTCTCATACTGGC | + |
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Preference number: 2 (lower is better) Translates to: CLFSHGFMGHYNTACISQRTISH*PISHTG Trigger: GCCAGTATGAGAAATGGGCCAGTGGGAAATAGTTCT...CTGTGAGATACATGCTGTGTTATAGTGTCCCATGAAACCATGGGAAAATAAACA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098179.9 |
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| 3UTR CAA 90 bp | TATATTCTTTATTATGTTAAAAAGGGTCTTACTCTGTATACAAGGTaGGCTTCAAATACAGAGCAATCTTCCTGCCACAGCTTCCCAGAT | + |
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Preference number: 2 (lower is better) Translates to: YILYYVKKGLTLYTR*ASNTEQSSCHSFPD Trigger: ATCTGGGAAGCTGTGGCAGGAAGATTGCTCTGTATTTGAAGCCAACCTTGTATACAGAGTAAGACCCTTTTTAACATAATAAAGAATATA 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000098179.9 |
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| 3UTR GCA 72 bp | GGAGCACCTCCTCAGGGGTGGAGCACCTCCTCACCATaGACAAGGCCTTGGCTTCCACCTCTGGCGCAAAGA | + |
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Preference number: 3 (lower is better) Translates to: GAPPQGWSTSSP*TRPWLPPLAQR Trigger: TCTTTGCGCCAGAGGTGGAAGCCAAGGCCTTGTGCATGGTGAGGAGGTGCTCCACCCCTGAGGAGGTGCTCC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098179.9 |
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| 3UTR-3UTR CAA 90 bp | ATGCTACAACATATGTGTGGAAGTCAGGTGCAGGGAATTGAACTCAAGTGCCCAACCATGCACAAGGCCTaGGCTTCCACCTCTGGCGCA | + |
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Preference number: 3 (lower is better) Translates to: MLQHMCGSQVQGIELKCPTMHKA*ASTSGA Trigger: TGCGCCAGAGGTGGAAGCCAAGGCCTTGTGCATGGT...TGGGCACTTGAGTTCAATTCCCTGCACCTGACTTCCACACATATGTTGTAGCAT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098179.9 |
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| 3UTR GCA 72 bp | AAATACAGAGCAATCTTCCTGCCACAGCTTCCCAGATaGAGGACGGCAGATATGAGCTCCCATGCAAGGTTC | + |
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Preference number: 3 (lower is better) Translates to: KYRAIFLPQLPR*RTADMSSHARF Trigger: GAACCTTGCATGGGAGCTCATATCTGCCGTCCTGCATCTGGGAAGCTGTGGCAGGAAGATTGCTCTGTATTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098179.9 |
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| 3UTR GCA 72 bp | ATGTGTGGAAGTCAGGTGCAGGGAATTGAACTCAAGTaGCCAGGCTTGTTGGCAAGAACTATTTCCCACTGG | + |
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Preference number: 3 (lower is better) Translates to: MCGSQVQGIELK*PGLLARTISHW Trigger: CCAGTGGGAAATAGTTCTTGCCAACAAGCCTGGGCACTTGAGTTCAATTCCCTGCACCTGACTTCCACACAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098179.9 |
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| 3UTR-3UTR CAA 90 bp | ATGCTACAACATATGTGTGGAAGTCAGGTGCAGGGAATTGAACTCAAGTGCCCATCAGAGCCAGAGACCTaGCAAGTAAACAGGCAAATG | + |
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Preference number: 3 (lower is better) Translates to: MLQHMCGSQVQGIELKCPSEPET*QVNRQM Trigger: CATTTGCCTGTTTACTTGCAAGGTCTCTGGCTCTGA...TGGGCACTTGAGTTCAATTCCCTGCACCTGACTTCCACACATATGTTGTAGCAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098179.9 |
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| 3UTR-3UTR CAA 90 bp | ACAATTTGTGTTTGTGTACATGTCTGGGCCTCTACATGCTACAACATATGTGTGGTCAGGTGCAGGGAATaGAACTCAAGTGCCCAGGCT | + |
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Preference number: 3 (lower is better) Translates to: TICVCVHVWASTCYNICVVRCRE*NSSAQA Trigger: AGCCTGGGCACTTGAGTTCAATTCCCTGCACCTGAC...CACACATATGTTGTAGCATGTAGAGGCCCAGACATGTACACAAACACAAATTGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098179.9 |
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| 3UTR GCA 72 bp | TGGCTTCCACCTCTGGCGCAAAGAATAAGAGAACTTTaGAGCAGTGTTATCTTACACAATGAGCACTCAGGC | + |
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Preference number: 3 (lower is better) Translates to: WLPPLAQRIREL*SSVILHNEHSG Trigger: GCCTGAGTGCTCATTGTGTAAGATAACACTGCTGCAAAGTTCTCTTATTCTTTGCGCCAGAGGTGGAAGCCA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098179.9 |
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| 3UTR GCA 72 bp | GCTTCCCAGATGCAGGACGGCAGATATGAGCTCCCATaGAAGGTTCTGTTGCACGATCTTAATGATCATTTA | + |
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Preference number: 3 (lower is better) Translates to: ASQMQDGRYELP*KVLLHDLNDHL Trigger: TAAATGATCATTAAGATCGTGCAACAGAACCTTGCATGGGAGCTCATATCTGCCGTCCTGCATCTGGGAAGC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098179.9 |
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| 3UTR GCA 72 bp | ACAATTTGTGTTTGTGTACATGTCTGGGCCTCTACATaGTACAACATATGTGTGGAAGTCAGGTGCAGGGAA | + |
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Preference number: 3 (lower is better) Translates to: TICVCVHVWAST*YNICVEVRCRE Trigger: TTCCCTGCACCTGACTTCCACACATATGTTGTAGCATGTAGAGGCCCAGACATGTACACAAACACAAATTGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098179.9 |
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| 3UTR-3UTR CAA 90 bp | CAATTTGTGTTTGTGTACATGTCTGGGCCTCTACATGCTACAACATATGTGTGGATTTCTCATACTGGCTaGAGGCAGAGTACAAAAATA | + |
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Preference number: 3 (lower is better) Translates to: QFVFVYMSGPLHATTYVWISHTG*RQSTKI Trigger: TATTTTTGTACTCTGCCTCAAGCCAGTATGAGAAAT...CCACACATATGTTGTAGCATGTAGAGGCCCAGACATGTACACAAACACAAATTG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000098179.9 |
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| 3UTR TCA 72 bp | AAATATGGAATGCTTCATAAACTCGCATGTCATCCATaGGCAGGGGCCATATTAACATTCCCTGATCATTCT | + |
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Preference number: 3 (lower is better) Translates to: KYGMLHKLACHP*AGAILTFPDHS Trigger: AGAATGATCAGGGAATGTTAATATGGCCCCTGCTCATGGATGACATGCGAGTTTATGAAGCATTCCATATTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098179.9 |
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| 3UTR-3UTR CAA 90 bp | CCTATAGCTAAGGGTGCATTTCTTAACCACAGATTCCTACCTATAATTTTCAGACTCAGGCACTTTTCCTaGACTAAATGGGAAGTGATT | + |
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Preference number: 3 (lower is better) Translates to: PIAKGAFLNHRFLPIIFRLRHFS*TKWEVI Trigger: AATCACTTCCCATTTAGTCAAGGAAAAGTGCCTGAG...TCTGAAAATTATAGGTAGGAATCTGTGGTTAAGAAATGCACCCTTAGCTATAGG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000098179.9 |
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| 3UTR CCA 72 bp | ATTATGTTAAAAAGGGTCTTACTCTGTATACAAGGTTaGCTTCAAATACAGAGCAATCTTCCTGCCACAGCT | + |
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Preference number: 3 (lower is better) Translates to: IMLKRVLLCIQG*LQIQSNLPATA Trigger: AGCTGTGGCAGGAAGATTGCTCTGTATTTGAAGCCAACCTTGTATACAGAGTAAGACCCTTTTTAACATAAT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000098179.9 |
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| 3UTR GCA 72 bp | AAAGGAATAAGACACCATACTGGACTGACAGTCACATaGCTCAAACAACATAAATCCCTAGTAATAACTCTT | + |
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Preference number: 3 (lower is better) Translates to: KGIRHHTGLTVT*LKQHKSLVITL Trigger: AAGAGTTATTACTAGGGATTTATGTTGTTTGAGGCATGTGACTGTCAGTCCAGTATGGTGTCTTATTCCTTT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098179.9 |
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| CDS-3UTR GCA 90 bp | TTAGCTCAGTGGTGGAGCACCTCCTCAGGGGTGGAGCACCTCCTCACCATGCACAGAACTACCTGCAGCTaGTCCTTGTACTCCCGGGCC | + |
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Preference number: 4 (lower is better) Translates to: LAQWWSTSSGVEHLLTMHRTTCS*SLYSRA Trigger: GGCCCGGGAGTACAAGGAGCAGCTGCAGGTAGTTCT...GTGCATGGTGAGGAGGTGCTCCACCCCTGAGGAGGTGCTCCACCACTGAGCTAA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098179.9 |
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| CDS-3UTR TCA 90 bp | TTAGCTCAGTGGTGGAGCACCTCCTCAGGGGTGGAGCACCTCCTCACCATGCACCCTTGGCAGAAGGTGTaGCCACAATCTGCACTCACA | + |
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Preference number: 4 (lower is better) Translates to: LAQWWSTSSGVEHLLTMHPWQKV*PQSALT Trigger: TGTGAGTGCAGATTGTGGTCACACCTTCTGCCAAGG...GTGCATGGTGAGGAGGTGCTCCACCCCTGAGGAGGTGCTCCACCACTGAGCTAA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098179.9 |
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| 3UTR CAA 72 bp | TCAGGGGTGGAGCACCTCCTCACCATGCACAAGGCCTaGGCTTCCACCTCTGGCGCAAAGAATAAGAGAACT | + |
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Preference number: 4 (lower is better) Translates to: SGVEHLLTMHKA*ASTSGAKNKRT Trigger: AGTTCTCTTATTCTTTGCGCCAGAGGTGGAAGCCAAGGCCTTGTGCATGGTGAGGAGGTGCTCCACCCCTGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098179.9 |
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| CDS-3UTR TCA 90 bp | CTCCTCACCATGCACAAGGCCTTGGCTTCCACCTCTGGCGCAAAGAATAAGAGAGTTCCACATCTGAGATaGAGTCTTCTAGCAACTTGC | + |
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Preference number: 4 (lower is better) Translates to: LLTMHKALASTSGAKNKRVPHLR*SLLATC Trigger: GCAAGTTGCTAGAAGACTTCATCTCAGATGTGGAAC...TCTCTTATTCTTTGCGCCAGAGGTGGAAGCCAAGGCCTTGTGCATGGTGAGGAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098179.9 |
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| 3UTR CAA 72 bp | CAGGTGCAGGGAATTGAACTCAAGTGCCCAGGCTTGTaGGCAAGAACTATTTCCCACTGGCCCATTTCTCAT | + |
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Preference number: 4 (lower is better) Translates to: QVQGIELKCPGL*ARTISHWPISH Trigger: ATGAGAAATGGGCCAGTGGGAAATAGTTCTTGCCAACAAGCCTGGGCACTTGAGTTCAATTCCCTGCACCTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098179.9 |
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| 3UTR CAA 72 bp | AGTCAGGTGCAGGGAATTGAACTCAAGTGCCCAGGCTaGTTGGCAAGAACTATTTCCCACTGGCCCATTTCT | + |
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Preference number: 4 (lower is better) Translates to: SQVQGIELKCPG*LARTISHWPIS Trigger: AGAAATGGGCCAGTGGGAAATAGTTCTTGCCAACAAGCCTGGGCACTTGAGTTCAATTCCCTGCACCTGACT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098179.9 |
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| CDS-3UTR TCA 90 bp | TGTGTGGAAGTCAGGTGCAGGGAATTGAACTCAAGTGCCCAGGCTTGTTGGCAATCTGAGCACTGTAACTaGTGTTCCACATCTGAGATG | + |
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Preference number: 4 (lower is better) Translates to: CVEVRCRELNSSAQACWQSEHCN*CSTSEM Trigger: CATCTCAGATGTGGAACATCAGTTACAGTGCTCAGA...TTGCCAACAAGCCTGGGCACTTGAGTTCAATTCCCTGCACCTGACTTCCACACA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098179.9 |
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| CDS-3UTR CCA 90 bp | CACACACACACACACACACATGGTACCTTATTCATTTGGGGTCCTTATTGTGACTCCAGATTGGATAGCTaGATGTCCCAGGACGCCTTC | + |
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Preference number: 4 (lower is better) Translates to: HTHTHTHGTLFIWGPYCDSRLDS*MSQDAF Trigger: GAAGGCGTCCTGGGACATCCAGCTATCCAATCTGGA...GTCACAATAAGGACCCCAAATGAATAAGGTACCATGTGTGTGTGTGTGTGTGTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098179.9 |
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| 3UTR CAA 72 bp | TGCTACAACATATGTGTGGAAGTCAGGTGCAGGGAATaGAACTCAAGTGCCCAGGCTTGTTGGCAAGAACTA | + |
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Preference number: 4 (lower is better) Translates to: CYNICVEVRCRE*NSSAQACWQEL Trigger: TAGTTCTTGCCAACAAGCCTGGGCACTTGAGTTCAATTCCCTGCACCTGACTTCCACACATATGTTGTAGCA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098179.9 |
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| CDS-3UTR GCA 90 bp | GGCCTCTACATGCTACAACATATGTGTGGAAGTCAGGTGCAGGGAATTGAACTCATGTCTTCCTTCTCTTaGCTCAGCTTCTGCAATTCA | + |
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Preference number: 4 (lower is better) Translates to: GLYMLQHMCGSQVQGIELMSSFS*LSFCNS Trigger: TGAATTGCAGAAGCTGAGGCAAGAGAAGGAAGACAT...GAGTTCAATTCCCTGCACCTGACTTCCACACATATGTTGTAGCATGTAGAGGCC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098179.9 |
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| CDS-3UTR TCA 90 bp | ACAATTTGTGTTTGTGTACATGTCTGGGCCTCTACATGCTACAACATATGTGTGAGCAACTTGCTCTGCTaGGCATGCTCACTTTCAGAC | + |
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Preference number: 4 (lower is better) Translates to: TICVCVHVWASTCYNICVSNLLC*ACSLSD Trigger: GTCTGAAAGTGAGCATGCTCAGCAGAGCAAGTTGCT...CACACATATGTTGTAGCATGTAGAGGCCCAGACATGTACACAAACACAAATTGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098179.9 |
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| CDS-3UTR CCA 90 bp | TGTGTGGAAGTCAGGTGCAGGGAATTGAACTCAAGTGCCCAGGCTTGTTGGCAAATAAGATTACTTGCTTaGTGGTCTTCATATCGTACT | + |
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Preference number: 4 (lower is better) Translates to: CVEVRCRELNSSAQACWQIRLLA*WSSYRT Trigger: AGTACGATATGAAGACCACCAAGCAAGTAATCTTAT...TTGCCAACAAGCCTGGGCACTTGAGTTCAATTCCCTGCACCTGACTTCCACACA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098179.9 |
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| CDS-3UTR TCA 90 bp | ATGCTACAACATATGTGTGGAAGTCAGGTGCAGGGAATTGAACTCAAGTGCCCATTCATTCTTCTCCTCTaGGTCTATGATATCCCTCAT | + |
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Preference number: 4 (lower is better) Translates to: MLQHMCGSQVQGIELKCPFILLL*VYDIPH Trigger: ATGAGGGATATCATAGACTCAGAGGAGAAGAATGAA...TGGGCACTTGAGTTCAATTCCCTGCACCTGACTTCCACACATATGTTGTAGCAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098179.9 |
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| CDS-3UTR CCA 90 bp | ACAATTTGTGTTTGTGTACATGTCTGGGCCTCTACATGCTACAACATATGTGTGTTTCTGCTCCTCTTCTaGGCTGGGCTTGAACTCTTT | + |
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Preference number: 4 (lower is better) Translates to: TICVCVHVWASTCYNICVFLLLF*AGLELF Trigger: AAAGAGTTCAAGCCCAGCCCAGAAGAGGAGCAGAAA...CACACATATGTTGTAGCATGTAGAGGCCCAGACATGTACACAAACACAAATTGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098179.9 |
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| CDS-3UTR CCA 90 bp | CCAGGCTTGTTGGCAAGAACTATTTCCCACTGGCCCATTTCTCATACTGGCTTGAGTAATGGCAATGTTTaGATGGTTATTTTGAACCAG | + |
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Preference number: 4 (lower is better) Translates to: PGLLARTISHWPISHTGLSNGNV*MVILNQ Trigger: CTGGTTCAAAATAACCATCCAAACATTGCCATTACT...CAAGCCAGTATGAGAAATGGGCCAGTGGGAAATAGTTCTTGCCAACAAGCCTGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098179.9 |
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| 3UTR CAA 72 bp | AGAACTATTTCCCACTGGCCCATTTCTCATACTGGCTaGAGGCAGAGTACAAAAATAAGCATAGTCACACTG | + |
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Preference number: 4 (lower is better) Translates to: RTISHWPISHTG*RQSTKISIVTL Trigger: CAGTGTGACTATGCTTATTTTTGTACTCTGCCTCAAGCCAGTATGAGAAATGGGCCAGTGGGAAATAGTTCT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000098179.9 |
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| CDS-3UTR CCA 90 bp | GGCCTCTACATGCTACAACATATGTGTGGAAGTCAGGTGCAGGGAATTGAACTCCGTGGGATTAAAATATaGAAAAACCCTATCAGGAAA | + |
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Preference number: 4 (lower is better) Translates to: GLYMLQHMCGSQVQGIELRGIKI*KNPIRK Trigger: TTTCCTGATAGGGTTTTTCCATATTTTAATCCCACG...GAGTTCAATTCCCTGCACCTGACTTCCACACATATGTTGTAGCATGTAGAGGCC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000098179.9 |
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| 3UTR CAA 72 bp | TATTATGTTAAAAAGGGTCTTACTCTGTATACAAGGTaGGCTTCAAATACAGAGCAATCTTCCTGCCACAGC | + |
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Preference number: 4 (lower is better) Translates to: YYVKKGLTLYTR*ASNTEQSSCHS Trigger: GCTGTGGCAGGAAGATTGCTCTGTATTTGAAGCCAACCTTGTATACAGAGTAAGACCCTTTTTAACATAATA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000098179.9 |
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| CDS-3UTR GCA 90 bp | CCTATAGCTAAGGGTGCATTTCTTAACCACAGATTCCTACCTATAATTTTCAGAAAATTCTTTCTTATCTaGCATCAGCCTTTGCAGAAC | + |
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Preference number: 4 (lower is better) Translates to: PIAKGAFLNHRFLPIIFRKFFLI*HQPLQN Trigger: GTTCTGCAAAGGCTGATGGCAGATAAGAAAGAATTT...TCTGAAAATTATAGGTAGGAATCTGTGGTTAAGAAATGCACCCTTAGCTATAGG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000098179.9 |
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| CDS GCA 90 bp | AATTCTTTCTTATCTGCCATCAGCCTTTGCAGAACTACCTGCAGCTaGTCCTTGTACTCCCGGGCCACCTCTTCAATGAGAGCTGTTTTG | + |
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Preference number: 5 (lower is better) Translates to: NSFLSAISLCRTTCS*SLYSRATSSMRAVL Trigger: CAAAACAGCTCTCATTGAAGAGGTGGCCCGGGAGTACAAGGAGCAGCTGCAGGTAGTTCTGCAAAGGCTGATGGCAGATAAGAAAGAATT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000051795.10 ENSMUST00000098179.9 |
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| CDS-3UTR CAA 90 bp | CCAGGCTTGTTGGCAAGAACTATTTCCCACTGGCCCATTTCTCATACTGGCTTGGACTCTGCCAGGTTGTaGAGAATGTCTTCCTTCTCT | + |
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Preference number: 5 (lower is better) Translates to: PGLLARTISHWPISHTGLDSARL*RMSSFS Trigger: AGAGAAGGAAGACATTCTCAACAACCTGGCAGAGTC...CAAGCCAGTATGAGAAATGGGCCAGTGGGAAATAGTTCTTGCCAACAAGCCTGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098179.9 |
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| CDS GCA 90 bp | TTTTCAAATTCTTTCTTATCTGCCATCAGCCTTTGCAGAACTACCTaGAGCTGCTCCTTGTACTCCCGGGCCACCTCTTCAATGAGAGCT | + |
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Preference number: 5 (lower is better) Translates to: FSNSFLSAISLCRTT*SCSLYSRATSSMRA Trigger: AGCTCTCATTGAAGAGGTGGCCCGGGAGTACAAGGAGCAGCTGCAGGTAGTTCTGCAAAGGCTGATGGCAGATAAGAAAGAATTTGAAAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000051795.10 ENSMUST00000098179.9 |
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| CDS GCA 90 bp | TCATCTTTCCAGTTTTCAAATTCTTTCTTATCTGCCATCAGCCTTTaGAGAACTACCTGCAGCTGCTCCTTGTACTCCCGGGCCACCTCT | + |
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Preference number: 5 (lower is better) Translates to: SSFQFSNSFLSAISL*RTTCSCSLYSRATS Trigger: AGAGGTGGCCCGGGAGTACAAGGAGCAGCTGCAGGTAGTTCTGCAAAGGCTGATGGCAGATAAGAAAGAATTTGAAAACTGGAAAGATGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000051795.10 ENSMUST00000098179.9 |
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| CDS-3UTR CAA 90 bp | CACACACACACACACACACATGGTACCTTATTCATTTGGGGTCCTTATTGTGACTCTTCTGGGCTGGGCTaGAACTCTTTGAGCCTCTCT | + |
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Preference number: 5 (lower is better) Translates to: HTHTHTHGTLFIWGPYCDSSGLG*NSLSLS Trigger: AGAGAGGCTCAAAGAGTTCAAGCCCAGCCCAGAAGA...GTCACAATAAGGACCCCAAATGAATAAGGTACCATGTGTGTGTGTGTGTGTGTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098179.9 |
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| CDS-3UTR CAA 90 bp | TGTTTATTTTCCCATGGTTTCATGGGACACTATAACACAGCATGTATCTCACAGAGCCTCTGTGACCTCTaGCAGCACTTGCAGCATGCC | + |
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Preference number: 5 (lower is better) Translates to: CLFSHGFMGHYNTACISQSLCDL*QHLQHA Trigger: GGCATGCTGCAAGTGCTGCAAGAGGTCACAGAGGCT...CTGTGAGATACATGCTGTGTTATAGTGTCCCATGAAACCATGGGAAAATAAACA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098179.9 |
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| CDS-3UTR CAA 90 bp | ACAATTTGTGTTTGTGTACATGTCTGGGCCTCTACATGCTACAACATATGTGTGCTGAACCCAGTAGCGTaGAGCCTCTGTGACCTCTTG | + |
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Preference number: 5 (lower is better) Translates to: TICVCVHVWASTCYNICVLNPVA*SLCDLL Trigger: CAAGAGGTCACAGAGGCTCAACGCTACTGGGTTCAG...CACACATATGTTGTAGCATGTAGAGGCCCAGACATGTACACAAACACAAATTGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098179.9 |
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| CDS-3UTR CAA 90 bp | CTCCTCACCATGCACAAGGCCTTGGCTTCCACCTCTGGCGCAAAGAATAAGAGACACATCTTTCTGTATTaGATTCTCCCAGTAAGTTCT | + |
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Preference number: 5 (lower is better) Translates to: LLTMHKALASTSGAKNKRHIFLY*ILPVSS Trigger: AGAACTTACTGGGAGAATCAAATACAGAAAGATGTG...TCTCTTATTCTTTGCGCCAGAGGTGGAAGCCAAGGCCTTGTGCATGGTGAGGAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098179.9 |
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| CDS-3UTR CAA 90 bp | CTCCTCACCATGCACAAGGCCTTGGCTTCCACCTCTGGCGCAAAGAATAAGAGACCCAGAAGCCATATTTaGGTTGATAATGTGAATCAT | + |
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Preference number: 5 (lower is better) Translates to: LLTMHKALASTSGAKNKRPRSHI*VDNVNH Trigger: ATGATTCACATTATCAACCAAAATATGGCTTCTGGG...TCTCTTATTCTTTGCGCCAGAGGTGGAAGCCAAGGCCTTGTGCATGGTGAGGAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098179.9 |
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| CDS-3UTR CAA 90 bp | CCTATAGCTAAGGGTGCATTTCTTAACCACAGATTCCTACCTATAATTTTCAGAGACCTCTTGCAGCACTaGCAGCATGCCTTGCAGGTC | + |
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Preference number: 5 (lower is better) Translates to: PIAKGAFLNHRFLPIIFRDLLQH*QHALQV Trigger: GACCTGCAAGGCATGCTGCAAGTGCTGCAAGAGGTC...TCTGAAAATTATAGGTAGGAATCTGTGGTTAAGAAATGCACCCTTAGCTATAGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098179.9 |
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| CDS-3UTR CAA 90 bp | CAATTTGTGTTTGTGTACATGTCTGGGCCTCTACATGCTACAACATATGTGTGGTCAGACTCTGCCAGGTaGTTGAGAATGTCTTCCTTC | + |
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Preference number: 5 (lower is better) Translates to: QFVFVYMSGPLHATTYVWSDSAR*LRMSSF Trigger: GAAGGAAGACATTCTCAACAACCTGGCAGAGTCTGA...CCACACATATGTTGTAGCATGTAGAGGCCCAGACATGTACACAAACACAAATTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098179.9 |
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| CDS TCA 90 bp | ATGTTCTCCACACCCTGTAGTATTTCTATGTCTGAGCACTGTAACTaGTGTTCCACATCTGAGATGAAGTCTTCTAGCAACTTGCTCTGC | + |
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Preference number: 5 (lower is better) Translates to: MFSTPCSISMSEHCN*CSTSEMKSSSNLLC Trigger: GCAGAGCAAGTTGCTAGAAGACTTCATCTCAGATGTGGAACATCAGTTACAGTGCTCAGACATAGAAATACTACAGGGTGTGGAGAACAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098179.9 |
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| CDS-3UTR CAA 90 bp | CAATTTGTGTTTGTGTACATGTCTGGGCCTCTACATGCTACAACATATGTGTGGGTAATGTTTTCCAGATaGGATAGCTGGATGTCCCAG | + |
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Preference number: 5 (lower is better) Translates to: QFVFVYMSGPLHATTYVWVMFSR*DSWMSQ Trigger: CTGGGACATCCAGCTATCCAATCTGGAAAACATTAC...CCACACATATGTTGTAGCATGTAGAGGCCCAGACATGTACACAAACACAAATTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098179.9 |
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| CDS TCA 90 bp | CCAGCTGAAAAGTTCTGTAGTATTTCTATGTCTGAGCACTGTAACTaGTGTTCCACATCTGAGATGAAGTCTTCTAGCAACTTGCTCTGC | + |
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Preference number: 5 (lower is better) Translates to: PAEKFCSISMSEHCN*CSTSEMKSSSNLLC Trigger: GCAGAGCAAGTTGCTAGAAGACTTCATCTCAGATGTGGAACATCAGTTACAGTGCTCAGACATAGAAATACTACAGAACTTTTCAGCTGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051795.10 |
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| CDS CAA 90 bp | AACCAGGGTCACCTGAACCCAGTAGCGTTGAGCCTCTGTGACCTCTaGCAGCACTTGCAGCATGCCTTGCAGGTCAGGGGCTCGGAACTT | + |
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Preference number: 6 (lower is better) Translates to: NQGHLNPVALSLCDL*QHLQHALQVRGSEL Trigger: AAGTTCCGAGCCCCTGACCTGCAAGGCATGCTGCAAGTGCTGCAAGAGGTCACAGAGGCTCAACGCTACTGGGTTCAGGTGACCCTGGTT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000051795.10 ENSMUST00000098179.9 |
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| CDS TCA 72 bp | CCAGGGTCACCTGAACCCAGTAGCGTTGAGCCTCTGTaGCCTCTTGCAGCACTTGCAGCATGCCTTGCAGGT | + |
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Preference number: 6 (lower is better) Translates to: PGSPEPSSVEPL*PLAALAACLAG Trigger: ACCTGCAAGGCATGCTGCAAGTGCTGCAAGAGGTCACAGAGGCTCAACGCTACTGGGTTCAGGTGACCCTGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000051795.10 ENSMUST00000098179.9 |
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| CDS GCA 72 bp | GCCTCTGTGACCTCTTGCAGCACTTGCAGCATGCCTTaGAGGTCAGGGGCTCGGAACTTTCTTTGTTCCCTG | + |
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Preference number: 6 (lower is better) Translates to: ASVTSCSTCSMP*RSGARNFLCSL Trigger: CAGGGAACAAAGAAAGTTCCGAGCCCCTGACCTGCAAGGCATGCTGCAAGTGCTGCAAGAGGTCACAGAGGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000051795.10 ENSMUST00000098179.9 |
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| CDS CAA 90 bp | TTCTTATCTGCCATCAGCCTTTGCAGAACTACCTGCAGCTGCTCCTaGTACTCCCGGGCCACCTCTTCAATGAGAGCTGTTTTGTGGCCC | + |
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Preference number: 6 (lower is better) Translates to: FLSAISLCRTTCSCS*YSRATSSMRAVLWP Trigger: GGGCCACAAAACAGCTCTCATTGAAGAGGTGGCCCGGGAGTACAAGGAGCAGCTGCAGGTAGTTCTGCAAAGGCTGATGGCAGATAAGAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000051795.10 ENSMUST00000098179.9 |
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| CDS GCA 72 bp | TCTTTCTTATCTGCCATCAGCCTTTGCAGAACTACCTaGAGCTGCTCCTTGTACTCCCGGGCCACCTCTTCA | + |
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Preference number: 6 (lower is better) Translates to: SFLSAISLCRTT*SCSLYSRATSS Trigger: TGAAGAGGTGGCCCGGGAGTACAAGGAGCAGCTGCAGGTAGTTCTGCAAAGGCTGATGGCAGATAAGAAAGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000051795.10 ENSMUST00000098179.9 |
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| CDS CAA 72 bp | GTTATTTTGAACCAGGGTCACCTGAACCCAGTAGCGTaGAGCCTCTGTGACCTCTTGCAGCACTTGCAGCAT | + |
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Preference number: 6 (lower is better) Translates to: VILNQGHLNPVA*SLCDLLQHLQH Trigger: ATGCTGCAAGTGCTGCAAGAGGTCACAGAGGCTCAACGCTACTGGGTTCAGGTGACCCTGGTTCAAAATAAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000051795.10 ENSMUST00000098179.9 |
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| CDS CAA 72 bp | GGGCTGGGCTTGAACTCTTTGAGCCTCTCTACTATGTaGGCCACATGTAGATTAGGCCTCAGATTGCTAGAC | + |
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Preference number: 6 (lower is better) Translates to: GLGLNSLSLSTM*ATCRLGLRLLD Trigger: GTCTAGCAATCTGAGGCCTAATCTACATGTGGCCAACATAGTAGAGAGGCTCAAAGAGTTCAAGCCCAGCCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000051795.10 ENSMUST00000098179.9 |
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| CDS GCA 72 bp | CAACTTGCTCTGCTGAGCATGCTCACTTTCAGACTCTaGCAGGTTGTTGAGAATGTCTTCCTTCTCTTGCCT | + |
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Preference number: 6 (lower is better) Translates to: QLALLSMLTFRL*QVVENVFLLLP Trigger: AGGCAAGAGAAGGAAGACATTCTCAACAACCTGGCAGAGTCTGAAAGTGAGCATGCTCAGCAGAGCAAGTTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000051795.10 ENSMUST00000098179.9 |
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| CDS CAA 72 bp | GGGGCTCGGAACTTTCTTTGTTCCCTGGCGATGGTTTaGGGCTTCTTCATCGAAAAAGTAAGACTCTCTCGT | + |
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Preference number: 6 (lower is better) Translates to: GARNFLCSLAMV*GFFIEKVRLSR Trigger: ACGAGAGAGTCTTACTTTTTCGATGAAGAAGCCCAAAACCATCGCCAGGGAACAAAGAAAGTTCCGAGCCCC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000051795.10 |
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| CDS CAA 90 bp | TTCATCTTTCCAGTTTTCAAATTCTTTCTTATCTGCCATCAGCCTTaGCAGAACTACCTGCAGCTGCTCCTTGTACTCCCGGGCCACCTC | + |
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Preference number: 6 (lower is better) Translates to: FIFPVFKFFLICHQP*QNYLQLLLVLPGHL Trigger: GAGGTGGCCCGGGAGTACAAGGAGCAGCTGCAGGTAGTTCTGCAAAGGCTGATGGCAGATAAGAAAGAATTTGAAAACTGGAAAGATGAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000051795.10 ENSMUST00000098179.9 |
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| CDS CAA 72 bp | CCAGTTTTCAAATTCTTTCTTATCTGCCATCAGCCTTaGCAGAACTACCTGCAGCTGCTCCTTGTACTCCCG | + |
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Preference number: 6 (lower is better) Translates to: PVFKFFLICHQP*QNYLQLLLVLP Trigger: CGGGAGTACAAGGAGCAGCTGCAGGTAGTTCTGCAAAGGCTGATGGCAGATAAGAAAGAATTTGAAAACTGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000051795.10 ENSMUST00000098179.9 |
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| CDS CAA 72 bp | GGGGCTCGGAACTTTCTTTGTTCCCTGGCGATGGTTTaGGGCTTCTTCATCGAAAAAGTAAGACTCCGTTTT | + |
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Preference number: 6 (lower is better) Translates to: GARNFLCSLAMV*GFFIEKVRLRF Trigger: AAAACGGAGTCTTACTTTTTCGATGAAGAAGCCCAAAACCATCGCCAGGGAACAAAGAAAGTTCCGAGCCCC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000098179.9 |
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| CDS CCA 72 bp | ATGTCTTGCACAGTTAAACACTTTCTGCTCCTCTTCTaGGCTGGGCTTGAACTCTTTGAGCCTCTCTACTAT | + |
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Preference number: 6 (lower is better) Translates to: MSCTVKHFLLLF*AGLELFEPLYY Trigger: ATAGTAGAGAGGCTCAAAGAGTTCAAGCCCAGCCCAGAAGAGGAGCAGAAAGTGTTTAACTGTGCAAGACAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000051795.10 ENSMUST00000098179.9 |
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| CDS CAA 72 bp | TTTGTCGTCAGTAATGGCAATGTTTGGATGGTTATTTaGAACCAGGGTCACCTGAACCCAGTAGCGTTGAGC | + |
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Preference number: 6 (lower is better) Translates to: FVVSNGNVWMVI*NQGHLNPVALS Trigger: GCTCAACGCTACTGGGTTCAGGTGACCCTGGTTCAAAATAACCATCCAAACATTGCCATTACTGACGACAAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000051795.10 ENSMUST00000098179.9 |
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| CDS CCA 72 bp | TCGTACTTGTCTTTTGTCGTCAGTAATGGCAATGTTTaGATGGTTATTTTGAACCAGGGTCACCTGAACCCA | + |
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Preference number: 6 (lower is better) Translates to: SYLSFVVSNGNV*MVILNQGHLNP Trigger: TGGGTTCAGGTGACCCTGGTTCAAAATAACCATCCAAACATTGCCATTACTGACGACAAAAGACAAGTACGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000051795.10 ENSMUST00000098179.9 |
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| CDS TCA 72 bp | ACACCCTGTAGTATTTCTATGTCTGAGCACTGTAACTaGTGTTCCACATCTGAGATGAAGTCTTCTAGCAAC | + |
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Preference number: 6 (lower is better) Translates to: TPCSISMSEHCN*CSTSEMKSSSN Trigger: GTTGCTAGAAGACTTCATCTCAGATGTGGAACATCAGTTACAGTGCTCAGACATAGAAATACTACAGGGTGT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098179.9 |
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| CDS TCA 72 bp | GAGTCTATGATATCCCTCATTCGTTTAAACTCTGACTaGACATTCTCCACATCTTTCTGTAACTTTGCCTCC | + |
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Preference number: 6 (lower is better) Translates to: ESMISLIRLNSD*TFSTSFCNFAS Trigger: GGAGGCAAAGTTACAGAAAGATGTGGAGAATGTTCAGTCAGAGTTTAAACGAATGAGGGATATCATAGACTC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051795.10 |
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| CDS TCA 72 bp | GTAGATAAGAGTCCCATTGTTGGAAATATTGTAAAATaGGAGAGTCCCAGCTGCATAGTCAAGGAAAACACC | + |
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Preference number: 6 (lower is better) Translates to: VDKSPIVGNIVK*ESPSCIVKENT Trigger: GGTGTTTTCCTTGACTATGCAGCTGGGACTCTCTCATTTTACAATATTTCCAACAATGGGACTCTTATCTAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000051795.10 ENSMUST00000098179.9 |
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| CDS TCA 72 bp | AAGTTCTGTAGTATTTCTATGTCTGAGCACTGTAACTaGTGTTCCACATCTGAGATGAAGTCTTCTAGCAAC | + |
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Preference number: 6 (lower is better) Translates to: KFCSISMSEHCN*CSTSEMKSSSN Trigger: GTTGCTAGAAGACTTCATCTCAGATGTGGAACATCAGTTACAGTGCTCAGACATAGAAATACTACAGAACTT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051795.10 |
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