Pregenerated sensors for TRIM43C (Mus musculus)
Ensembl gene IDs: ENSMUSG00000067399Ensembl transcript IDs: ENSMUST00000163255.9, ENSMUST00000186363.2
Found 38 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR GCA 90 bp | GCCACTCCTCTGGCCAAGCATATACAAACCATCACAATAAAGAGGGGACACATTAAGTCATCCAAGTCCTaGACCAGCAGCTCCTGGTAT | + |
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Preference number: 4 (lower is better) Translates to: ATPLAKHIQTITIKRGHIKSSKS*TSSSWY Trigger: ATACCAGGAGCTGCTGGTGCAGGACTTGGATGACTT...AATGTGTCCCCTCTTTATTGTGATGGTTTGTATATGCTTGGCCAGAGGAGTGGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000163255.9 ENSMUST00000186363.2 |
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| CDS-3UTR CCA 90 bp | GCCACTCCTCTGGCCAAGCATATACAAACCATCACAATAAAGAGGGGACACATTGCCAACCTGGCCAACTaGCTTCTCTATATAGTGTTC | + |
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Preference number: 4 (lower is better) Translates to: ATPLAKHIQTITIKRGHIANLAN*LLYIVF Trigger: GAACACTATATAGAGAAGCCAGTTGGCCAGGTTGGC...AATGTGTCCCCTCTTTATTGTGATGGTTTGTATATGCTTGGCCAGAGGAGTGGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000163255.9 ENSMUST00000186363.2 |
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| CDS-3UTR GCA 90 bp | CACTCCTCTGGCCAAGCATATACAAACCATCACAATAAAGAGGGGACACATTATAAGTCATCCAAGTCCTaGACCAGCAGCTCCTGGTAT | + |
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Preference number: 4 (lower is better) Translates to: HSSGQAYTNHHNKEGTHYKSSKS*TSSSWY Trigger: ATACCAGGAGCTGCTGGTGCAGGACTTGGATGACTT...ATAATGTGTCCCCTCTTTATTGTGATGGTTTGTATATGCTTGGCCAGAGGAGTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000163255.9 ENSMUST00000186363.2 |
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| CDS-3UTR CCA 90 bp | ACTCCTCTGGCCAAGCATATACAAACCATCACAATAAAGAGGGGACACATTATCATATCTCTGGTTGCATaGTTGCCTACACGTGGGGCA | + |
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Preference number: 4 (lower is better) Translates to: TPLAKHIQTITIKRGHIIISLVA*LPTRGA Trigger: TGCCCCACGTGTAGGCAACCATGCAACCAGAGATAT...GATAATGTGTCCCCTCTTTATTGTGATGGTTTGTATATGCTTGGCCAGAGGAGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000163255.9 ENSMUST00000186363.2 |
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| CDS-3UTR TCA 90 bp | ACAGCTAAGATGATAGTCTTAAAGCTCACACCCACAGTGACTCACCAACTCCAACAAAGAAGAAAGGCCTaGCAGCACAATGGAAAGTTC | + |
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Preference number: 4 (lower is better) Translates to: TAKMIVLKLTPTVTHQLQQRRKA*QHNGKF Trigger: GAACTTTCCATTGTGCTGTCAGGCCTTTCTTCTTTG...TTGGAGTTGGTGAGTCACTGTGGGTGTGAGCTTTAAGACTATCATCTTAGCTGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000163255.9 ENSMUST00000186363.2 |
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| CDS-3UTR CCA 90 bp | CACTCCTCTGGCCAAGCATATACAAACCATCACAATAAAGAGGGGACACATTATGCCAACCTGGCCAACTaGCTTCTCTATATAGTGTTC | + |
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Preference number: 4 (lower is better) Translates to: HSSGQAYTNHHNKEGTHYANLAN*LLYIVF Trigger: GAACACTATATAGAGAAGCCAGTTGGCCAGGTTGGC...ATAATGTGTCCCCTCTTTATTGTGATGGTTTGTATATGCTTGGCCAGAGGAGTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000163255.9 ENSMUST00000186363.2 |
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| CDS-3UTR TCA 90 bp | CACTCCTCTGGCCAAGCATATACAAACCATCACAATAAAGAGGGGACACATTATCAAAGAAGAAAGGCCTaGCAGCACAATGGAAAGTTC | + |
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Preference number: 4 (lower is better) Translates to: HSSGQAYTNHHNKEGTHYQRRKA*QHNGKF Trigger: GAACTTTCCATTGTGCTGTCAGGCCTTTCTTCTTTG...ATAATGTGTCCCCTCTTTATTGTGATGGTTTGTATATGCTTGGCCAGAGGAGTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000163255.9 ENSMUST00000186363.2 |
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| CDS-3UTR GCA 90 bp | GCCACTCCTCTGGCCAAGCATATACAAACCATCACAATAAAGAGGGGACACATTCTGACAATGAACACCTaGTTCTTCAGAGAAATGTCA | + |
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Preference number: 4 (lower is better) Translates to: ATPLAKHIQTITIKRGHILTMNT*FFREMS Trigger: TGACATTTCTCTGAAGAAGCAGGTGTTCATTGTCAG...AATGTGTCCCCTCTTTATTGTGATGGTTTGTATATGCTTGGCCAGAGGAGTGGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000163255.9 ENSMUST00000186363.2 |
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| CDS-3UTR GCA 90 bp | ACAGCTAAGATGATAGTCTTAAAGCTCACACCCACAGTGACTCACCAACTCCAATGGGTCACACACTTGTaGTCCTCAGAATTCAGATAT | + |
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Preference number: 4 (lower is better) Translates to: TAKMIVLKLTPTVTHQLQWVTHL*SSEFRY Trigger: ATATCTGAATTCTGAGGAGCACAAGTGTGTGACCCA...TTGGAGTTGGTGAGTCACTGTGGGTGTGAGCTTTAAGACTATCATCTTAGCTGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000163255.9 ENSMUST00000186363.2 |
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| CDS-3UTR CCA 90 bp | CTGGCCAAGCATATACAAACCATCACAATAAAGAGGGGACACATTATCATAGAAATATCTCTGGTTGCATaGTTGCCTACACGTGGGGCA | + |
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Preference number: 4 (lower is better) Translates to: LAKHIQTITIKRGHIIIEISLVA*LPTRGA Trigger: TGCCCCACGTGTAGGCAACCATGCAACCAGAGATAT...TTCTATGATAATGTGTCCCCTCTTTATTGTGATGGTTTGTATATGCTTGGCCAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000163255.9 ENSMUST00000186363.2 |
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| CDS-3UTR CCA 90 bp | TGCCACTCCTCTGGCCAAGCATATACAAACCATCACAATAAAGAGGGGACACATGAAGAAATATATCTGTaGGTGTCACCACATAGCTTC | + |
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Preference number: 4 (lower is better) Translates to: CHSSGQAYTNHHNKEGTHEEIYL*VSPHSF Trigger: GAAGCTATGTGGTGACACCCACAGATATATTTCTTC...ATGTGTCCCCTCTTTATTGTGATGGTTTGTATATGCTTGGCCAGAGGAGTGGCA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000163255.9 ENSMUST00000186363.2 |
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| CDS-3UTR GCA 90 bp | ACTCCTCTGGCCAAGCATATACAAACCATCACAATAAAGAGGGGACACATTATCTGGGTCACACACTTGTaGTCCTCAGAATTCAGATAT | + |
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Preference number: 4 (lower is better) Translates to: TPLAKHIQTITIKRGHIIWVTHL*SSEFRY Trigger: ATATCTGAATTCTGAGGAGCACAAGTGTGTGACCCA...GATAATGTGTCCCCTCTTTATTGTGATGGTTTGTATATGCTTGGCCAGAGGAGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000163255.9 ENSMUST00000186363.2 |
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| CDS-3UTR CCA 90 bp | CACTCCTCTGGCCAAGCATATACAAACCATCACAATAAAGAGGGGACACATTATTCATTTATATATCTCTaGTTGCATGGTTGCCTACAC | + |
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Preference number: 4 (lower is better) Translates to: HSSGQAYTNHHNKEGTHYSFIYL*LHGCLH Trigger: GTGTAGGCAACCATGCAACCAGAGATATATAAATGA...ATAATGTGTCCCCTCTTTATTGTGATGGTTTGTATATGCTTGGCCAGAGGAGTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000163255.9 ENSMUST00000186363.2 |
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| CDS-3UTR TCA 90 bp | GCCAAGCATATACAAACCATCACAATAAAGAGGGGACACATTATCATAGAAGTAATCAAAAGGTCTGACTaGGTTGTAGCCGAACATGAT | + |
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Preference number: 4 (lower is better) Translates to: AKHIQTITIKRGHIIIEVIKRSD*VVAEHD Trigger: ATCATGTTCGGCTACAACTCAGTCAGACCTTTTGAT...TACTTCTATGATAATGTGTCCCCTCTTTATTGTGATGGTTTGTATATGCTTGGC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000163255.9 ENSMUST00000186363.2 |
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| CDS-3UTR TCA 90 bp | CATATACAAACCATCACAATAAAGAGGGGACACATTATCATAGAAGTACTGGAAATCAAAAGGTCTGACTaGGTTGTAGCCGAACATGAT | + |
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Preference number: 4 (lower is better) Translates to: HIQTITIKRGHIIIEVLEIKRSD*VVAEHD Trigger: ATCATGTTCGGCTACAACTCAGTCAGACCTTTTGAT...TTCCAGTACTTCTATGATAATGTGTCCCCTCTTTATTGTGATGGTTTGTATATG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000163255.9 ENSMUST00000186363.2 |
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| CDS-3UTR GCA 90 bp | GCCAAGCATATACAAACCATCACAATAAAGAGGGGACACATTATCATAGAAGTACTGACAATGAACACCTaGTTCTTCAGAGAAATGTCA | + |
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Preference number: 4 (lower is better) Translates to: AKHIQTITIKRGHIIIEVLTMNT*FFREMS Trigger: TGACATTTCTCTGAAGAAGCAGGTGTTCATTGTCAG...TACTTCTATGATAATGTGTCCCCTCTTTATTGTGATGGTTTGTATATGCTTGGC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000163255.9 ENSMUST00000186363.2 |
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| CDS-3UTR GCA 90 bp | CTGGCCAAGCATATACAAACCATCACAATAAAGAGGGGACACATTATCATAGAACATAATGAGTCCATGTaGTTTAGAAGTTCCTCCATT | + |
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Preference number: 4 (lower is better) Translates to: LAKHIQTITIKRGHIIIEHNESM*FRSSSI Trigger: AATGGAGGAACTTCTAAAGCACATGGACTCATTATG...TTCTATGATAATGTGTCCCCTCTTTATTGTGATGGTTTGTATATGCTTGGCCAG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000163255.9 ENSMUST00000186363.2 |
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| CDS-3UTR CCA 90 bp | GCCAAGCATATACAAACCATCACAATAAAGAGGGGACACATTATCATAGAAGTATCATTTATATATCTCTaGTTGCATGGTTGCCTACAC | + |
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Preference number: 4 (lower is better) Translates to: AKHIQTITIKRGHIIIEVSFIYL*LHGCLH Trigger: GTGTAGGCAACCATGCAACCAGAGATATATAAATGA...TACTTCTATGATAATGTGTCCCCTCTTTATTGTGATGGTTTGTATATGCTTGGC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000163255.9 ENSMUST00000186363.2 |
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| CDS TCA 90 bp | TCATACCCTGTGGCATGTCCACCTTTGCCGCTAGCTTACTCCTTCTaGACAAGTCATCCAAGTCCTGCACCAGCAGCTCCTGGTATGGCC | + |
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Preference number: 5 (lower is better) Translates to: SYPVACPPLPLAYSF*TSHPSPAPAAPGMA Trigger: GGCCATACCAGGAGCTGCTGGTGCAGGACTTGGATGACTTGTTCAGAAGGAGTAAGCTAGCGGCAAAGGTGGACATGCCACAGGGTATGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000163255.9 ENSMUST00000186363.2 |
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| CDS GCA 90 bp | CGCTGTGCTCCTGGGAGTCAGAACACAGGTGACAGAGGAGGATCTTaGTCTTATCACAGAAGATCATCTTTTTCGCCTTGTGGGTCACAC | + |
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Preference number: 5 (lower is better) Translates to: RCAPGSQNTGDRGGS*SYHRRSSFSPCGSH Trigger: GTGTGACCCACAAGGCGAAAAAGATGATCTTCTGTGATAAGAGCAAGATCCTCCTCTGTCACCTGTGTTCTGACTCCCAGGAGCACAGCG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000163255.9 ENSMUST00000186363.2 |
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| CDS-3UTR CAA 90 bp | ACAGCTAAGATGATAGTCTTAAAGCTCACACCCACAGTGACTCACCAACTCCAATTCACTCGGAAGGAGTaGAGCCTTGCAGTCAGCCCA | + |
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Preference number: 5 (lower is better) Translates to: TAKMIVLKLTPTVTHQLQFTRKE*SLAVSP Trigger: TGGGCTGACTGCAAGGCTCAACTCCTTCCGAGTGAA...TTGGAGTTGGTGAGTCACTGTGGGTGTGAGCTTTAAGACTATCATCTTAGCTGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000163255.9 ENSMUST00000186363.2 |
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| CDS CCA 90 bp | TACATATCCACCCTCACAATCAAGGAACACGCCAACCTGGCCAACTaGCTTCTCTATATAGTGTTCACGTCCTATGCGGGTGATGAGAAT | + |
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Preference number: 5 (lower is better) Translates to: YISTLTIKEHANLAN*LLYIVFTSYAGDEN Trigger: ATTCTCATCACCCGCATAGGACGTGAACACTATATAGAGAAGCCAGTTGGCCAGGTTGGCGTGTTCCTTGATTGTGAGGGTGGATATGTA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000163255.9 ENSMUST00000186363.2 |
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| CDS-3UTR CAA 90 bp | ACAGCTAAGATGATAGTCTTAAAGCTCACACCCACAGTGACTCACCAACTCCAAATGGCCTCTGGGACATaGTCATCAGCTCCTGATACA | + |
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Preference number: 5 (lower is better) Translates to: TAKMIVLKLTPTVTHQLQMASGT*SSAPDT Trigger: TGTATCAGGAGCTGATGACAATGTCCCAGAGGCCAT...TTGGAGTTGGTGAGTCACTGTGGGTGTGAGCTTTAAGACTATCATCTTAGCTGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000163255.9 ENSMUST00000186363.2 |
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| CDS-3UTR CAA 90 bp | GCCACTCCTCTGGCCAAGCATATACAAACCATCACAATAAAGAGGGGACACATTACTGAGGGGTGGACATaGTTTTCCATACACTCTCTT | + |
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Preference number: 5 (lower is better) Translates to: ATPLAKHIQTITIKRGHITEGWT*FSIHSL Trigger: AAGAGAGTGTATGGAAAACAATGTCCACCCCTCAGT...AATGTGTCCCCTCTTTATTGTGATGGTTTGTATATGCTTGGCCAGAGGAGTGGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000163255.9 ENSMUST00000186363.2 |
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| CDS-3UTR CAA 90 bp | CTGGCCAAGCATATACAAACCATCACAATAAAGAGGGGACACATTATCATAGAATTCACTCGGAAGGAGTaGAGCCTTGCAGTCAGCCCA | + |
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Preference number: 5 (lower is better) Translates to: LAKHIQTITIKRGHIIIEFTRKE*SLAVSP Trigger: TGGGCTGACTGCAAGGCTCAACTCCTTCCGAGTGAA...TTCTATGATAATGTGTCCCCTCTTTATTGTGATGGTTTGTATATGCTTGGCCAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000163255.9 ENSMUST00000186363.2 |
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| CDS-3UTR CAA 90 bp | GCCAAGCATATACAAACCATCACAATAAAGAGGGGACACATTATCATAGAAGTAATGGCCTCTGGGACATaGTCATCAGCTCCTGATACA | + |
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Preference number: 5 (lower is better) Translates to: AKHIQTITIKRGHIIIEVMASGT*SSAPDT Trigger: TGTATCAGGAGCTGATGACAATGTCCCAGAGGCCAT...TACTTCTATGATAATGTGTCCCCTCTTTATTGTGATGGTTTGTATATGCTTGGC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000163255.9 ENSMUST00000186363.2 |
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| CDS TCA 90 bp | ACAAGGTCATTCTCCTCTCTTTTTCTACATAATTCTGCTGGATTTTaGGCCTCTGCCATAATGAGTCCATGTGCTTTAGAAGTTCCTCCA | + |
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Preference number: 5 (lower is better) Translates to: TRSFSSLFLHNSAGF*ASAIMSPCALEVPP Trigger: TGGAGGAACTTCTAAAGCACATGGACTCATTATGGCAGAGGCTCAAAATCCAGCAGAATTATGTAGAAAAAGAGAGGAGAATGACCTTGT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000163255.9 ENSMUST00000186363.2 |
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| CDS CCA 72 bp | TGCAGTCAGCCCAGGAATGGAATGGGCACGGAGTCTTaGTATCATACCCTGTGGCATGTCCACCTTTGCCGC | + |
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Preference number: 6 (lower is better) Translates to: CSQPRNGMGTES*YHTLWHVHLCR Trigger: GCGGCAAAGGTGGACATGCCACAGGGTATGATACCAAGACTCCGTGCCCATTCCATTCCTGGGCTGACTGCA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000163255.9 ENSMUST00000186363.2 |
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| CDS TCA 72 bp | GTGGCATGTCCACCTTTGCCGCTAGCTTACTCCTTCTaGACAAGTCATCCAAGTCCTGCACCAGCAGCTCCT | + |
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Preference number: 6 (lower is better) Translates to: VACPPLPLAYSF*TSHPSPAPAAP Trigger: AGGAGCTGCTGGTGCAGGACTTGGATGACTTGTTCAGAAGGAGTAAGCTAGCGGCAAAGGTGGACATGCCAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000163255.9 ENSMUST00000186363.2 |
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| CDS CCA 72 bp | CAAGTCATCCAAGTCCTGCACCAGCAGCTCCTGGTATaGCCTCTGGGACATTGTCATCAGCTCCTGATACAC | + |
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Preference number: 6 (lower is better) Translates to: QVIQVLHQQLLV*PLGHCHQLLIH Trigger: GTGTATCAGGAGCTGATGACAATGTCCCAGAGGCCATACCAGGAGCTGCTGGTGCAGGACTTGGATGACTTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000163255.9 ENSMUST00000186363.2 |
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| CDS CCA 72 bp | AAGGAGTTGAGCCTTGCAGTCAGCCCAGGAATGGAATaGGCACGGAGTCTTGGTATCATACCCTGTGGCATG | + |
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Preference number: 6 (lower is better) Translates to: KELSLAVSPGME*ARSLGIIPCGM Trigger: CATGCCACAGGGTATGATACCAAGACTCCGTGCCCATTCCATTCCTGGGCTGACTGCAAGGCTCAACTCCTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000163255.9 ENSMUST00000186363.2 |
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| CDS CAA 90 bp | CATCCAAGTCCTGCACCAGCAGCTCCTGGTATGGCCTCTGGGACATaGTCATCAGCTCCTGATACACCTCTGTTAGTTGATTTCTCTCGT | + |
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Preference number: 6 (lower is better) Translates to: HPSPAPAAPGMASGT*SSAPDTPLLVDFSR Trigger: ACGAGAGAAATCAACTAACAGAGGTGTATCAGGAGCTGATGACAATGTCCCAGAGGCCATACCAGGAGCTGCTGGTGCAGGACTTGGATG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000163255.9 ENSMUST00000186363.2 |
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| CDS CCA 72 bp | ACCCTCACAATCAAGGAACACGCCAACCTGGCCAACTaGCTTCTCTATATAGTGTTCACGTCCTATGCGGGT | + |
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Preference number: 6 (lower is better) Translates to: TLTIKEHANLAN*LLYIVFTSYAG Trigger: ACCCGCATAGGACGTGAACACTATATAGAGAAGCCAGTTGGCCAGGTTGGCGTGTTCCTTGATTGTGAGGGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000163255.9 ENSMUST00000186363.2 |
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| CDS TCA 72 bp | ATGGTTGCCTACACGTGGGGCAGTAGGCAGGAAATTTaGTGTCTTCTTGAAAAAGTAAGAGACATGTCTCGC | + |
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Preference number: 6 (lower is better) Translates to: MVAYTWGSRQEI*CLLEKVRDMSR Trigger: GCGAGACATGTCTCTTACTTTTTCAAGAAGACATCAAATTTCCTGCCTACTGCCCCACGTGTAGGCAACCAT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000163255.9 ENSMUST00000186363.2 |
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| CDS GCA 72 bp | GCTTCTTCAGAGAAATGTCATTTATATATCTCTGGTTaGATGGTTGCCTACACGTGGGGCAGTAGGCAGGAA | + |
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Preference number: 6 (lower is better) Translates to: ASSEKCHLYISG*MVAYTWGSRQE Trigger: TTCCTGCCTACTGCCCCACGTGTAGGCAACCATGCAACCAGAGATATATAAATGACATTTCTCTGAAGAAGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000163255.9 ENSMUST00000186363.2 |
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| CDS CCA 72 bp | CGATGGGTTTTAGCTGAATCCAGAGATGTGCTTTCATaGAGAAGTCTGATATCAAAAGGTCTGACTGAGTTG | + |
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Preference number: 6 (lower is better) Translates to: RWVLAESRDVLS*RSLISKGLTEL Trigger: CAACTCAGTCAGACCTTTTGATATCAGACTTCTCCATGAAAGCACATCTCTGGATTCAGCTAAAACCCATCG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000163255.9 ENSMUST00000186363.2 |
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| CDS CCA 72 bp | CTTTGTTTCTCAAACACTCAAGAAGAAATATATCTGTaGGTGTCACCACATAGCTTCTCCCCCTTAACCAGG | + |
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Preference number: 6 (lower is better) Translates to: LCFSNTQEEIYL*VSPHSFSPLTR Trigger: CCTGGTTAAGGGGGAGAAGCTATGTGGTGACACCCACAGATATATTTCTTCTTGAGTGTTTGAGAAACAAAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000163255.9 ENSMUST00000186363.2 |
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| CDS TCA 72 bp | TTCTCCTCTCTTTTTCTACATAATTCTGCTGGATTTTaGGCCTCTGCCATAATGAGTCCATGTGCTTTAGAA | + |
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Preference number: 6 (lower is better) Translates to: FSSLFLHNSAGF*ASAIMSPCALE Trigger: TTCTAAAGCACATGGACTCATTATGGCAGAGGCTCAAAATCCAGCAGAATTATGTAGAAAAAGAGAGGAGAA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000163255.9 ENSMUST00000186363.2 |
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