Pregenerated sensors for TRIM43B (Mus musculus)
Ensembl gene IDs: ENSMUSG00000079162Ensembl transcript IDs: ENSMUST00000167113.8, ENSMUST00000189557.2
Found 45 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | TCAGACACACCAGAAGAGGACATCAGATCTCATTACAGATGGGTGTaGGCCACCATGTGGTTGTGGGGATTTGAACACAGGACCTTCAGA | + |
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Preference number: 1 (lower is better) Translates to: SDTPEEDIRSHYRWV*ATMWLWGFEHRTFR Trigger: TCTGAAGGTCCTGTGTTCAAATCCCCACAACCACATGGTGGCTCACACCCATCTGTAATGAGATCTGATGTCCTCTTCTGGTGTGTCTGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000167113.8 |
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| 3UTR CAA 90 bp | GATCTCATTACAGATGGGTGTGAGCCACCATGTGGTTGTGGGGATTaGAACACAGGACCTTCAGAAGAACAGTCCCTTAACCAAGAGTCA | + |
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Preference number: 2 (lower is better) Translates to: DLITDGCEPPCGCGD*NTGPSEEQSLNQES Trigger: TGACTCTTGGTTAAGGGACTGTTCTTCTGAAGGTCCTGTGTTCAAATCCCCACAACCACATGGTGGCTCACACCCATCTGTAATGAGATC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000167113.8 |
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| 3UTR-3UTR TCA 90 bp | ACTGCTATTAACAGACACCATGACCAAGGCAAGTCTTATAAAGGACAACATTTATTCTACATCTTCATCTaGACGCTGCTAGTGGAAGAC | + |
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Preference number: 2 (lower is better) Translates to: TAINRHHDQGKSYKGQHLFYIFI*TLLVED Trigger: GTCTTCCACTAGCAGCGTTCAGATGAAGATGTAGAA...TAAATGTTGTCCTTTATAAGACTTGCCTTGGTCATGGTGTCTGTTAATAGCAGT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000167113.8 |
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| 3UTR TCA 72 bp | CCAGAAGAGGACATCAGATCTCATTACAGATGGGTGTaGGCCACCATGTGGTTGTGGGGATTTGAACACAGG | + |
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Preference number: 3 (lower is better) Translates to: PEEDIRSHYRWV*ATMWLWGFEHR Trigger: CCTGTGTTCAAATCCCCACAACCACATGGTGGCTCACACCCATCTGTAATGAGATCTGATGTCCTCTTCTGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000167113.8 |
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| CDS-3UTR TCA 90 bp | AGTGCCACTCCCCTGGCCAAGCATACACAAACCATCACAATAAAGAGGGGACACATGGAACAGTGTGTGTaGCCGCTGTGCTCCTGGGAG | + |
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Preference number: 4 (lower is better) Translates to: SATPLAKHTQTITIKRGHMEQCV*PLCSWE Trigger: CTCCCAGGAGCACAGCGGTCACACACACTGTTCCAT...GTGTCCCCTCTTTATTGTGATGGTTTGTGTATGCTTGGCCAGGGGAGTGGCACT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000167113.8 ENSMUST00000189557.2 |
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| CDS-3UTR TCA 90 bp | CACTCCCCTGGCCAAGCATACACAAACCATCACAATAAAGAGGGGACACATTATATGGAACAGTGTGTGTaGCCGCTGTGCTCCTGGGAG | + |
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Preference number: 4 (lower is better) Translates to: HSPGQAYTNHHNKEGTHYMEQCV*PLCSWE Trigger: CTCCCAGGAGCACAGCGGTCACACACACTGTTCCAT...ATAATGTGTCCCCTCTTTATTGTGATGGTTTGTGTATGCTTGGCCAGGGGAGTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000167113.8 ENSMUST00000189557.2 |
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| 3UTR CAA 72 bp | ACAGATGGGTGTGAGCCACCATGTGGTTGTGGGGATTaGAACACAGGACCTTCAGAAGAACAGTCCCTTAAC | + |
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Preference number: 4 (lower is better) Translates to: TDGCEPPCGCGD*NTGPSEEQSLN Trigger: GTTAAGGGACTGTTCTTCTGAAGGTCCTGTGTTCAAATCCCCACAACCACATGGTGGCTCACACCCATCTGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000167113.8 |
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| CDS-3UTR CCA 90 bp | AGTGCCACTCCCCTGGCCAAGCATACACAAACCATCACAATAAAGAGGGGACACTTCATAAAGATACCCTaGCAGATGGAGCAGGTGAGT | + |
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Preference number: 4 (lower is better) Translates to: SATPLAKHTQTITIKRGHFIKIP*QMEQVS Trigger: ACTCACCTGCTCCATCTGCCAGGGTATCTTTATGAA...GTGTCCCCTCTTTATTGTGATGGTTTGTGTATGCTTGGCCAGGGGAGTGGCACT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000167113.8 ENSMUST00000189557.2 |
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| CDS-3UTR CCA 90 bp | GATGGGTGTGAGCCACCATGTGGTTGTGGGGATTTGAACACAGGACCTTCAGAAATGGTTGCATACACATaGGGCAGTAGGCAGGAAATT | + |
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Preference number: 4 (lower is better) Translates to: DGCEPPCGCGDLNTGPSEMVAYT*GSRQEI Trigger: AATTTCCTGCCTACTGCCCCATGTGTATGCAACCAT...TTCTGAAGGTCCTGTGTTCAAATCCCCACAACCACATGGTGGCTCACACCCATC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000167113.8 |
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| CDS-3UTR CCA 90 bp | TCTAATAGTGCCACTCCCCTGGCCAAGCATACACAAACCATCACAATAAAGAGGTGGTATCATACCCTGTaGCATGTCCAGCTTTGCCGC | + |
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Preference number: 4 (lower is better) Translates to: SNSATPLAKHTQTITIKRWYHTL*HVQLCR Trigger: GCGGCAAAGCTGGACATGCCACAGGGTATGATACCA...CCTCTTTATTGTGATGGTTTGTGTATGCTTGGCCAGGGGAGTGGCACTATTAGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000167113.8 ENSMUST00000189557.2 |
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| CDS-3UTR CCA 90 bp | CACTCCCCTGGCCAAGCATACACAAACCATCACAATAAAGAGGGGACACATTATAGCCCAGGAATGGAATaGGCACGGAGTCTTGGTATC | + |
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Preference number: 4 (lower is better) Translates to: HSPGQAYTNHHNKEGTHYSPGME*ARSLGI Trigger: GATACCAAGACTCCGTGCCCATTCCATTCCTGGGCT...ATAATGTGTCCCCTCTTTATTGTGATGGTTTGTGTATGCTTGGCCAGGGGAGTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000167113.8 ENSMUST00000189557.2 |
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| CDS-3UTR CCA 90 bp | GATGGGTGTGAGCCACCATGTGGTTGTGGGGATTTGAACACAGGACCTTCAGAATTCTTCACTGAGGGGTaGACATTGTTTTCCATACAC | + |
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Preference number: 4 (lower is better) Translates to: DGCEPPCGCGDLNTGPSEFFTEG*TLFSIH Trigger: GTGTATGGAAAACAATGTCCACCCCTCAGTGAAGAA...TTCTGAAGGTCCTGTGTTCAAATCCCCACAACCACATGGTGGCTCACACCCATC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000167113.8 |
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| CDS-3UTR CCA 90 bp | AGTGCCACTCCCCTGGCCAAGCATACACAAACCATCACAATAAAGAGGGGACACTTCTTCACTGAGGGGTaGACATTGTTTTCCATACAC | + |
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Preference number: 4 (lower is better) Translates to: SATPLAKHTQTITIKRGHFFTEG*TLFSIH Trigger: GTGTATGGAAAACAATGTCCACCCCTCAGTGAAGAA...GTGTCCCCTCTTTATTGTGATGGTTTGTGTATGCTTGGCCAGGGGAGTGGCACT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 2 transcripts: ENSMUST00000167113.8 ENSMUST00000189557.2 |
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| CDS-3UTR CCA 90 bp | GGATCATGGCAATATCTAGGTAGGCATGGTAAAGACCCAGATGAGAGTTCTACATGGTATCATACCCTGTaGCATGTCCAGCTTTGCCGC | + |
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Preference number: 4 (lower is better) Translates to: GSWQYLGRHGKDPDESSTWYHTL*HVQLCR Trigger: GCGGCAAAGCTGGACATGCCACAGGGTATGATACCA...TGTAGAACTCTCATCTGGGTCTTTACCATGCCTACCTAGATATTGCCATGATCC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000167113.8 ENSMUST00000189557.2 |
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| CDS-3UTR GCA 90 bp | GATGGGTGTGAGCCACCATGTGGTTGTGGGGATTTGAACACAGGACCTTCAGAATGGGTCACACACTTGTaGTCCTCAGAATTCAAATAT | + |
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Preference number: 4 (lower is better) Translates to: DGCEPPCGCGDLNTGPSEWVTHL*SSEFKY Trigger: ATATTTGAATTCTGAGGAGCACAAGTGTGTGACCCA...TTCTGAAGGTCCTGTGTTCAAATCCCCACAACCACATGGTGGCTCACACCCATC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000167113.8 |
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| CDS-3UTR TCA 90 bp | TCCCTTAACCAAGAGTCAGTGCTCTTAACCTCTGAGCCATCTCTCCATCCCTTAAAACACTCTATGTGTTaGTCCCTTTCTTCACTGAGG | + |
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Preference number: 4 (lower is better) Translates to: SLNQESVLLTSEPSLHPLKHSMC*SLSSLR Trigger: CCTCAGTGAAGAAAGGGATCAACACATAGAGTGTTT...TAAGGGATGGAGAGATGGCTCAGAGGTTAAGAGCACTGACTCTTGGTTAAGGGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000167113.8 |
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| CDS-3UTR CCA 90 bp | CAATATCTAGGTAGGCATGGTAAAGACCCAGATGAGAGTTCTACATCTTCATCTAGCCCAGGAATGGAATaGGCACGGAGTCTTGGTATC | + |
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Preference number: 4 (lower is better) Translates to: QYLGRHGKDPDESSTSSSSPGME*ARSLGI Trigger: GATACCAAGACTCCGTGCCCATTCCATTCCTGGGCT...AGATGAAGATGTAGAACTCTCATCTGGGTCTTTACCATGCCTACCTAGATATTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000167113.8 ENSMUST00000189557.2 |
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| CDS-3UTR CCA 90 bp | CAATATCTAGGTAGGCATGGTAAAGACCCAGATGAGAGTTCTACATCTTCATCTGAACAGCTACATCAATaGAACAGTGTGTGTGACCGC | + |
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Preference number: 4 (lower is better) Translates to: QYLGRHGKDPDESSTSSSEQLHQ*NSVCDR Trigger: GCGGTCACACACACTGTTCCATTGATGTAGCTGTTC...AGATGAAGATGTAGAACTCTCATCTGGGTCTTTACCATGCCTACCTAGATATTG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000167113.8 ENSMUST00000189557.2 |
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| CDS-3UTR CCA 90 bp | GGCCAAGCATACACAAACCATCACAATAAAGAGGGGACACATTATCATAGAAGTGAACAGCTACATCAATaGAACAGTGTGTGTGACCGC | + |
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Preference number: 4 (lower is better) Translates to: GQAYTNHHNKEGTHYHRSEQLHQ*NSVCDR Trigger: GCGGTCACACACACTGTTCCATTGATGTAGCTGTTC...ACTTCTATGATAATGTGTCCCCTCTTTATTGTGATGGTTTGTGTATGCTTGGCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000167113.8 ENSMUST00000189557.2 |
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| CDS-3UTR CCA 90 bp | ACTGCTATTAACAGACACCATGACCAAGGCAAGTCTTATAAAGGACAACATTTACCTCCCGTAGCTTCATaGACTTCAACCACCACAAGG | + |
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Preference number: 4 (lower is better) Translates to: TAINRHHDQGKSYKGQHLPPVAS*TSTTTR Trigger: CCTTGTGGTGGTTGAAGTCCATGAAGCTACGGGAGG...TAAATGTTGTCCTTTATAAGACTTGCCTTGGTCATGGTGTCTGTTAATAGCAGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000167113.8 |
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| CDS-3UTR CCA 90 bp | CATACACAAACCATCACAATAAAGAGGGGACACATTATCATAGAAGTACTAGAACCTCCCGTAGCTTCATaGACAACCACCACAAGGTCG | + |
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Preference number: 4 (lower is better) Translates to: HTQTITIKRGHIIIEVLEPPVAS*TTTTRS Trigger: CGACCTTGTGGTGGTTGTCCATGAAGCTACGGGAGG...TTCTAGTACTTCTATGATAATGTGTCCCCTCTTTATTGTGATGGTTTGTGTATG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000189557.2 |
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| CDS-3UTR CCA 90 bp | GGCCAAGCATACACAAACCATCACAATAAAGAGGGGACACATTATCATAGAAGTATGGTTGCATACACATaGGGCAGTAGGCAGGAAATT | + |
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Preference number: 4 (lower is better) Translates to: GQAYTNHHNKEGTHYHRSMVAYT*GSRQEI Trigger: AATTTCCTGCCTACTGCCCCATGTGTATGCAACCAT...ACTTCTATGATAATGTGTCCCCTCTTTATTGTGATGGTTTGTGTATGCTTGGCC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000167113.8 ENSMUST00000189557.2 |
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| CDS-3UTR TCA 90 bp | CAATATCTAGGTAGGCATGGTAAAGACCCAGATGAGAGTTCTACATCTTCATCTAAACACTCTATGTGTTaGTCCCTTTCTTCACTGAGG | + |
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Preference number: 4 (lower is better) Translates to: QYLGRHGKDPDESSTSSSKHSMC*SLSSLR Trigger: CCTCAGTGAAGAAAGGGATCAACACATAGAGTGTTT...AGATGAAGATGTAGAACTCTCATCTGGGTCTTTACCATGCCTACCTAGATATTG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000167113.8 ENSMUST00000189557.2 |
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| CDS-3UTR GCA 90 bp | GGCCAAGCATACACAAACCATCACAATAAAGAGGGGACACATTATCATAGAAGTTGGGTCACACACTTGTaGTCCTCAGAATTCAAATAT | + |
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Preference number: 4 (lower is better) Translates to: GQAYTNHHNKEGTHYHRSWVTHL*SSEFKY Trigger: ATATTTGAATTCTGAGGAGCACAAGTGTGTGACCCA...ACTTCTATGATAATGTGTCCCCTCTTTATTGTGATGGTTTGTGTATGCTTGGCC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000167113.8 ENSMUST00000189557.2 |
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| CDS-3UTR CCA 90 bp | ACTGCTATTAACAGACACCATGACCAAGGCAAGTCTTATAAAGGACAACATTTATTCATAAAGATACCCTaGCAGATGGAGCAGGTGAGT | + |
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Preference number: 4 (lower is better) Translates to: TAINRHHDQGKSYKGQHLFIKIP*QMEQVS Trigger: ACTCACCTGCTCCATCTGCCAGGGTATCTTTATGAA...TAAATGTTGTCCTTTATAAGACTTGCCTTGGTCATGGTGTCTGTTAATAGCAGT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000167113.8 |
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| CDS-3UTR CCA 90 bp | GGCCAAGCATACACAAACCATCACAATAAAGAGGGGACACATTATCATAGAAGTATATTCCTGGTTAAATaGTTGCATACACATGGGGCA | + |
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Preference number: 4 (lower is better) Translates to: GQAYTNHHNKEGTHYHRSIFLVK*LHTHGA Trigger: TGCCCCATGTGTATGCAACCATTTAACCAGGAATAT...ACTTCTATGATAATGTGTCCCCTCTTTATTGTGATGGTTTGTGTATGCTTGGCC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000167113.8 ENSMUST00000189557.2 |
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| CDS TCA 90 bp | TCATACCCTGTGGCATGTCCAGCTTTGCCGCTAGCTTACTCCTTCTaGACAAGTCATCCAAGTCCTGCACCAGCAGCTCCTGGTATGGCC | + |
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Preference number: 5 (lower is better) Translates to: SYPVACPALPLAYSF*TSHPSPAPAAPGMA Trigger: GGCCATACCAGGAGCTGCTGGTGCAGGACTTGGATGACTTGTTCAGAAGGAGTAAGCTAGCGGCAAAGCTGGACATGCCACAGGGTATGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000167113.8 ENSMUST00000189557.2 |
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| CDS CCA 90 bp | TTACTCCTTCTGAACAAGTCATCCAAGTCCTGCACCAGCAGCTCCTaGTATGGCCTCTGGGACATTGTCATCAGCTCCCGATACACCTCT | + |
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Preference number: 5 (lower is better) Translates to: LLLLNKSSKSCTSSS*YGLWDIVISSRYTS Trigger: AGAGGTGTATCGGGAGCTGATGACAATGTCCCAGAGGCCATACCAGGAGCTGCTGGTGCAGGACTTGGATGACTTGTTCAGAAGGAGTAA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000167113.8 ENSMUST00000189557.2 |
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| CDS-3UTR CAA 90 bp | CACTCCCCTGGCCAAGCATACACAAACCATCACAATAAAGAGGGGACACATTATATGGCCTCTGGGACATaGTCATCAGCTCCCGATACA | + |
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Preference number: 5 (lower is better) Translates to: HSPGQAYTNHHNKEGTHYMASGT*SSAPDT Trigger: TGTATCGGGAGCTGATGACAATGTCCCAGAGGCCAT...ATAATGTGTCCCCTCTTTATTGTGATGGTTTGTGTATGCTTGGCCAGGGGAGTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000167113.8 ENSMUST00000189557.2 |
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| CDS TCA 90 bp | ACAAGGTCGTTCTCCTCTCTTTTTCTACATAATTCTGCTGGATTTTaGGCCTCCGCCATAATGAGTCCATGTGCTTTAGAAGTTCCTCCA | + |
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Preference number: 5 (lower is better) Translates to: TRSFSSLFLHNSAGF*ASAIMSPCALEVPP Trigger: TGGAGGAACTTCTAAAGCACATGGACTCATTATGGCGGAGGCTCAAAATCCAGCAGAATTATGTAGAAAAAGAGAGGAGAACGACCTTGT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000167113.8 ENSMUST00000189557.2 |
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| CDS-3UTR CAA 90 bp | CATACACAAACCATCACAATAAAGAGGGGACACATTATCATAGAAGTACTAGAAATGGCCTCTGGGACATaGTCATCAGCTCCCGATACA | + |
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Preference number: 5 (lower is better) Translates to: HTQTITIKRGHIIIEVLEMASGT*SSAPDT Trigger: TGTATCGGGAGCTGATGACAATGTCCCAGAGGCCAT...TTCTAGTACTTCTATGATAATGTGTCCCCTCTTTATTGTGATGGTTTGTGTATG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000167113.8 ENSMUST00000189557.2 |
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| CDS GCA 90 bp | TTATCACAGAAGATCATCTTTTTCGCCTTGTGGGTCACACACTTGTaGTCCTCAGAATTCAAATATTCCATGAGCCTTTTCTTTCTGACA | + |
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Preference number: 5 (lower is better) Translates to: LSQKIIFFALWVTHL*SSEFKYSMSLFFLT Trigger: TGTCAGAAAGAAAAGGCTCATGGAATATTTGAATTCTGAGGAGCACAAGTGTGTGACCCACAAGGCGAAAAAGATGATCTTCTGTGATAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000167113.8 ENSMUST00000189557.2 |
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| CDS CCA 72 bp | TGCAGTCAGCCCAGGAATGGAATGGGCACGGAGTCTTaGTATCATACCCTGTGGCATGTCCAGCTTTGCCGC | + |
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Preference number: 6 (lower is better) Translates to: CSQPRNGMGTES*YHTLWHVQLCR Trigger: GCGGCAAAGCTGGACATGCCACAGGGTATGATACCAAGACTCCGTGCCCATTCCATTCCTGGGCTGACTGCA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000167113.8 ENSMUST00000189557.2 |
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| CDS CCA 72 bp | TCCAAGTCCTGCACCAGCAGCTCCTGGTATGGCCTCTaGGACATTGTCATCAGCTCCCGATACACCTCTGTT | + |
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Preference number: 6 (lower is better) Translates to: SKSCTSSSWYGL*DIVISSRYTSV Trigger: AACAGAGGTGTATCGGGAGCTGATGACAATGTCCCAGAGGCCATACCAGGAGCTGCTGGTGCAGGACTTGGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000167113.8 ENSMUST00000189557.2 |
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| CDS CCA 72 bp | CAAGTCATCCAAGTCCTGCACCAGCAGCTCCTGGTATaGCCTCTGGGACATTGTCATCAGCTCCCGATACAC | + |
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Preference number: 6 (lower is better) Translates to: QVIQVLHQQLLV*PLGHCHQLPIH Trigger: GTGTATCGGGAGCTGATGACAATGTCCCAGAGGCCATACCAGGAGCTGCTGGTGCAGGACTTGGATGACTTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000167113.8 ENSMUST00000189557.2 |
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| CDS TCA 72 bp | GTGGCATGTCCAGCTTTGCCGCTAGCTTACTCCTTCTaGACAAGTCATCCAAGTCCTGCACCAGCAGCTCCT | + |
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Preference number: 6 (lower is better) Translates to: VACPALPLAYSF*TSHPSPAPAAP Trigger: AGGAGCTGCTGGTGCAGGACTTGGATGACTTGTTCAGAAGGAGTAAGCTAGCGGCAAAGCTGGACATGCCAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000167113.8 ENSMUST00000189557.2 |
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| CDS GCA 72 bp | GCTAGCTTACTCCTTCTGAACAAGTCATCCAAGTCCTaGACCAGCAGCTCCTGGTATGGCCTCTGGGACATT | + |
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Preference number: 6 (lower is better) Translates to: ASLLLLNKSSKS*TSSSWYGLWDI Trigger: AATGTCCCAGAGGCCATACCAGGAGCTGCTGGTGCAGGACTTGGATGACTTGTTCAGAAGGAGTAAGCTAGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000167113.8 ENSMUST00000189557.2 |
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| CDS CAA 90 bp | CATCCAAGTCCTGCACCAGCAGCTCCTGGTATGGCCTCTGGGACATaGTCATCAGCTCCCGATACACCTCTGTTAGTTGATTTCTCTCGT | + |
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Preference number: 6 (lower is better) Translates to: HPSPAPAAPGMASGT*SSAPDTPLLVDFSR Trigger: ACGAGAGAAATCAACTAACAGAGGTGTATCGGGAGCTGATGACAATGTCCCAGAGGCCATACCAGGAGCTGCTGGTGCAGGACTTGGATG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000167113.8 ENSMUST00000189557.2 |
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| CDS CCA 72 bp | GATCGTCCTTTCTCAAACACTCAAGAAATAGATCTGTaGGTGTCGCCACATAGCTTCTCCCCCTTAACCAGG | + |
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Preference number: 6 (lower is better) Translates to: DRPFSNTQEIDL*VSPHSFSPLTR Trigger: CCTGGTTAAGGGGGAGAAGCTATGTGGCGACACCCACAGATCTATTTCTTGAGTGTTTGAGAAAGGACGATC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000167113.8 ENSMUST00000189557.2 |
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| CDS CAA 72 bp | TACATATCCACCCTCACAATCAAGGAACACGCCAACTaGGCCAACTGGCTTCTCTATATAGTGTTCACCTCC | + |
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Preference number: 6 (lower is better) Translates to: YISTLTIKEHAN*ANWLLYIVFTS Trigger: GGAGGTGAACACTATATAGAGAAGCCAGTTGGCCAAGTTGGCGTGTTCCTTGATTGTGAGGGTGGATATGTA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000167113.8 ENSMUST00000189557.2 |
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| CDS CCA 72 bp | CGATGGGTTTCAGCTGAATCCAGAGATGTGCTTTCATaGAGAAGTCTGATATCAAAAGGTCTGAGTGAGGTG | + |
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Preference number: 6 (lower is better) Translates to: RWVSAESRDVLS*RSLISKGLSEV Trigger: CACCTCACTCAGACCTTTTGATATCAGACTTCTCCATGAAAGCACATCTCTGGATTCAGCTGAAACCCATCG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000167113.8 ENSMUST00000189557.2 |
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| CDS CAA 72 bp | TATGTGTTGATCCCTTTCTTCACTGAGGGGTGGACATaGTTTTCCATACACTCTCTTGATCACTTCCTCCCG | + |
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Preference number: 6 (lower is better) Translates to: YVLIPFFTEGWT*FSIHSLDHFLP Trigger: CGGGAGGAAGTGATCAAGAGAGTGTATGGAAAACAATGTCCACCCCTCAGTGAAGAAAGGGATCAACACATA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000167113.8 ENSMUST00000189557.2 |
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| CDS TCA 72 bp | ATGGTTGCATACACATGGGGCAGTAGGCAGGAAATTTaGTGTCTTCTTGAAAAAGTAAGAGACATGCCTCGC | + |
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Preference number: 6 (lower is better) Translates to: MVAYTWGSRQEI*CLLEKVRDMPR Trigger: GCGAGGCATGTCTCTTACTTTTTCAAGAAGACATCAAATTTCCTGCCTACTGCCCCATGTGTATGCAACCAT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000167113.8 ENSMUST00000189557.2 |
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| CDS GCA 72 bp | AAGATCATCTTTTTCGCCTTGTGGGTCACACACTTGTaGTCCTCAGAATTCAAATATTCCATGAGCCTTTTC | + |
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Preference number: 6 (lower is better) Translates to: KIIFFALWVTHL*SSEFKYSMSLF Trigger: GAAAAGGCTCATGGAATATTTGAATTCTGAGGAGCACAAGTGTGTGACCCACAAGGCGAAAAAGATGATCTT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000167113.8 ENSMUST00000189557.2 |
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| CDS TCA 72 bp | TTCTCCTCTCTTTTTCTACATAATTCTGCTGGATTTTaGGCCTCCGCCATAATGAGTCCATGTGCTTTAGAA | + |
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Preference number: 6 (lower is better) Translates to: FSSLFLHNSAGF*ASAIMSPCALE Trigger: TTCTAAAGCACATGGACTCATTATGGCGGAGGCTCAAAATCCAGCAGAATTATGTAGAAAAAGAGAGGAGAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000167113.8 ENSMUST00000189557.2 |
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