Pregenerated sensors for TRIM43A (Mus musculus)
Ensembl gene IDs: ENSMUSG00000090693Ensembl transcript IDs: ENSMUST00000164661.4
Found 42 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR TCA 90 bp | CACTCCCCTGGCCAAGCATATACAAACCATCACAATAAAGAGGGGACACATTATGGCAGATGGAGCAGGTaGGTGTTTCCTCCTGAGGGT | + |
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Preference number: 4 (lower is better) Translates to: HSPGQAYTNHHNKEGTHYGRWSR*VFPPEG Trigger: ACCCTCAGGAGGAAACACTCACCTGCTCCATCTGCC...ATAATGTGTCCCCTCTTTATTGTGATGGTTTGTATATGCTTGGCCAGGGGAGTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000164661.4 |
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| CDS-3UTR TCA 90 bp | GCCACTCCCCTGGCCAAGCATATACAAACCATCACAATAAAGAGGGGACACATTGAGTCAGAACACAGGTaGCAGAGGAGGATCTTGCTC | + |
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Preference number: 4 (lower is better) Translates to: ATPLAKHIQTITIKRGHIESEHR*QRRILL Trigger: GAGCAAGATCCTCCTCTGTCACCTGTGTTCTGACTC...AATGTGTCCCCTCTTTATTGTGATGGTTTGTATATGCTTGGCCAGGGGAGTGGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000164661.4 |
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| CDS-3UTR CCA 90 bp | GCCACTCCCCTGGCCAAGCATATACAAACCATCACAATAAAGAGGGGACACATTCAGTCAGCCCAGGAATaGAATGGGCATGGAGTCTTG | + |
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Preference number: 4 (lower is better) Translates to: ATPLAKHIQTITIKRGHIQSAQE*NGHGVL Trigger: CAAGACTCCATGCCCATTCCATTCCTGGGCTGACTG...AATGTGTCCCCTCTTTATTGTGATGGTTTGTATATGCTTGGCCAGGGGAGTGGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000164661.4 |
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| CDS-3UTR TCA 90 bp | CATTCTAATAGTGCCACTCCCCTGGCCAAGCATATACAAACCATCACAATAAAGATGGAACAGTGTGTGTaGCCACTGTGCTCCTGGGAG | + |
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Preference number: 4 (lower is better) Translates to: HSNSATPLAKHIQTITIKMEQCV*PLCSWE Trigger: CTCCCAGGAGCACAGTGGTCACACACACTGTTCCAT...CTTTATTGTGATGGTTTGTATATGCTTGGCCAGGGGAGTGGCACTATTAGAATG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000164661.4 |
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| CDS-3UTR GCA 90 bp | TGCCACTCCCCTGGCCAAGCATATACAAACCATCACAATAAAGAGGGGACACATACTCCTACAGTCCACTaGTCATGGTCCTTCAAATCC | + |
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Preference number: 4 (lower is better) Translates to: CHSPGQAYTNHHNKEGTHTPTVH*SWSFKS Trigger: GGATTTGAAGGACCATGAGCAGTGGACTGTAGGAGT...ATGTGTCCCCTCTTTATTGTGATGGTTTGTATATGCTTGGCCAGGGGAGTGGCA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000164661.4 |
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| CDS-3UTR TCA 90 bp | TGCCACTCCCCTGGCCAAGCATATACAAACCATCACAATAAAGAGGGGACACATCTAGCTTACTCCTTCTaGACAAGTCATCCAAGTCCT | + |
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Preference number: 4 (lower is better) Translates to: CHSPGQAYTNHHNKEGTHLAYSF*TSHPSP Trigger: AGGACTTGGATGACTTGTTCAGAAGGAGTAAGCTAG...ATGTGTCCCCTCTTTATTGTGATGGTTTGTATATGCTTGGCCAGGGGAGTGGCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000164661.4 |
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| CDS-3UTR TCA 90 bp | TGCCACTCCCCTGGCCAAGCATATACAAACCATCACAATAAAGAGGGGACACATTCCTCCATTTTCTCCTaGACAGCTACATCAATGGAA | + |
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Preference number: 4 (lower is better) Translates to: CHSPGQAYTNHHNKEGTHSSIFS*TATSME Trigger: TTCCATTGATGTAGCTGTTCAGGAGAAAATGGAGGA...ATGTGTCCCCTCTTTATTGTGATGGTTTGTATATGCTTGGCCAGGGGAGTGGCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000164661.4 |
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| CDS-3UTR TCA 90 bp | CACTCCCCTGGCCAAGCATATACAAACCATCACAATAAAGAGGGGACACATTATTTCCATACACTCTCTTaGTCACTTCCTCCCGTAGCT | + |
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Preference number: 4 (lower is better) Translates to: HSPGQAYTNHHNKEGTHYFHTLS*SLPPVA Trigger: AGCTACGGGAGGAAGTGATCAAGAGAGTGTATGGAA...ATAATGTGTCCCCTCTTTATTGTGATGGTTTGTATATGCTTGGCCAGGGGAGTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000164661.4 |
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| CDS-3UTR TCA 90 bp | CACTCCCCTGGCCAAGCATATACAAACCATCACAATAAAGAGGGGACACATTATACGATGGGTTTCAGCTaGATCCAGAGATGTGCTTTC | + |
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Preference number: 4 (lower is better) Translates to: HSPGQAYTNHHNKEGTHYTMGFS*IQRCAF Trigger: GAAAGCACATCTCTGGATTCAGCTGAAACCCATCGT...ATAATGTGTCCCCTCTTTATTGTGATGGTTTGTATATGCTTGGCCAGGGGAGTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000164661.4 |
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| CDS-3UTR TCA 90 bp | ACTCCCCTGGCCAAGCATATACAAACCATCACAATAAAGAGGGGACACATTATCCAGAGAAGAAAGGCCTaGCAGCACAATGGAAAGTTC | + |
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Preference number: 4 (lower is better) Translates to: TPLAKHIQTITIKRGHIIQRRKA*QHNGKF Trigger: GAACTTTCCATTGTGCTGTCAGGCCTTTCTTCTCTG...GATAATGTGTCCCCTCTTTATTGTGATGGTTTGTATATGCTTGGCCAGGGGAGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000164661.4 |
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| CDS-3UTR CCA 90 bp | CATTCTAATAGTGCCACTCCCCTGGCCAAGCATATACAAACCATCACAATAAAGACAGTCCACTGCTCATaGTCCTTCAAATCCACCTCC | + |
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Preference number: 4 (lower is better) Translates to: HSNSATPLAKHIQTITIKTVHCS*SFKSTS Trigger: GGAGGTGGATTTGAAGGACCATGAGCAGTGGACTGT...CTTTATTGTGATGGTTTGTATATGCTTGGCCAGGGGAGTGGCACTATTAGAATG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000164661.4 |
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| CDS-3UTR TCA 90 bp | CACTCCCCTGGCCAAGCATATACAAACCATCACAATAAAGAGGGGACACATTATATCAAAAGGTCTGACTaGGGTGTAGCCGAACATGAT | + |
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Preference number: 4 (lower is better) Translates to: HSPGQAYTNHHNKEGTHYIKRSD*GVAEHD Trigger: ATCATGTTCGGCTACACCTCAGTCAGACCTTTTGAT...ATAATGTGTCCCCTCTTTATTGTGATGGTTTGTATATGCTTGGCCAGGGGAGTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000164661.4 |
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| CDS-3UTR TCA 90 bp | CATTCTAATAGTGCCACTCCCCTGGCCAAGCATATACAAACCATCACAATAAAGGTGAGTGTTTCCTCCTaGGGGTCTTGTAAATTGTCT | + |
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Preference number: 4 (lower is better) Translates to: HSNSATPLAKHIQTITIKVSVSS*GSCKLS Trigger: AGACAATTTACAAGACCCTCAGGAGGAAACACTCAC...CTTTATTGTGATGGTTTGTATATGCTTGGCCAGGGGAGTGGCACTATTAGAATG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000164661.4 |
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| CDS-3UTR TCA 90 bp | TGCCACTCCCCTGGCCAAGCATATACAAACCATCACAATAAAGAGGGGACACATAAAGTAGTGTTGCTTTaGTGTCTCAAACACTCTATG | + |
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Preference number: 4 (lower is better) Translates to: CHSPGQAYTNHHNKEGTHKVVLL*CLKHSM Trigger: CATAGAGTGTTTGAGACATCAAAGCAACACTACTTT...ATGTGTCCCCTCTTTATTGTGATGGTTTGTATATGCTTGGCCAGGGGAGTGGCA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000164661.4 |
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| CDS-3UTR GCA 90 bp | TGCCACTCCCCTGGCCAAGCATATACAAACCATCACAATAAAGAGGGGACACATTGGGTCACACACTTGTaGTCCTTAGAATTCAAATAT | + |
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Preference number: 4 (lower is better) Translates to: CHSPGQAYTNHHNKEGTHWVTHL*SLEFKY Trigger: ATATTTGAATTCTAAGGAGCACAAGTGTGTGACCCA...ATGTGTCCCCTCTTTATTGTGATGGTTTGTATATGCTTGGCCAGGGGAGTGGCA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000164661.4 |
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| CDS-3UTR CCA 90 bp | CATTCTAATAGTGCCACTCCCCTGGCCAAGCATATACAAACCATCACAATAAAGGAACAGCTACATCAATaGAACAGTGTGTGTGACCAC | + |
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Preference number: 4 (lower is better) Translates to: HSNSATPLAKHIQTITIKEQLHQ*NSVCDH Trigger: GTGGTCACACACACTGTTCCATTGATGTAGCTGTTC...CTTTATTGTGATGGTTTGTATATGCTTGGCCAGGGGAGTGGCACTATTAGAATG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000164661.4 |
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| CDS-3UTR TCA 90 bp | CATTCTAATAGTGCCACTCCCCTGGCCAAGCATATACAAACCATCACAATAAAGAAACACTCTATGTGTTaGTCCCTTTCTTCACAGAGG | + |
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Preference number: 4 (lower is better) Translates to: HSNSATPLAKHIQTITIKKHSMC*SLSSQR Trigger: CCTCTGTGAAGAAAGGGATCAACACATAGAGTGTTT...CTTTATTGTGATGGTTTGTATATGCTTGGCCAGGGGAGTGGCACTATTAGAATG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000164661.4 |
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| CDS-3UTR CCA 90 bp | CATTCTAATAGTGCCACTCCCCTGGCCAAGCATATACAAACCATCACAATAAAGTTCATAAAGATACTCTaGCAGATGGAGCAGGTGAGT | + |
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Preference number: 4 (lower is better) Translates to: HSNSATPLAKHIQTITIKFIKIL*QMEQVS Trigger: ACTCACCTGCTCCATCTGCCAGAGTATCTTTATGAA...CTTTATTGTGATGGTTTGTATATGCTTGGCCAGGGGAGTGGCACTATTAGAATG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000164661.4 |
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| CDS-3UTR TCA 90 bp | CACTCCCCTGGCCAAGCATATACAAACCATCACAATAAAGAGGGGACACATTATAATTTGATGTCTTCTTaGGAAAGTAAGAGACATGCC | + |
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Preference number: 4 (lower is better) Translates to: HSPGQAYTNHHNKEGTHYNLMSS*ESKRHA Trigger: GGCATGTCTCTTACTTTCTCAAGAAGACATCAAATT...ATAATGTGTCCCCTCTTTATTGTGATGGTTTGTATATGCTTGGCCAGGGGAGTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000164661.4 |
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| CDS TCA 90 bp | CCCTTTCTTCACAGAGGGGTGGACATTGTTTTCCATACACTCTCTTaGTCACTTCCTCCCGTAGCTTCACGGACAACCACCACAAGGTCG | + |
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Preference number: 5 (lower is better) Translates to: PFLHRGVDIVFHTLS*SLPPVASRTTTTRS Trigger: CGACCTTGTGGTGGTTGTCCGTGAAGCTACGGGAGGAAGTGATCAAGAGAGTGTATGGAAAACAATGTCCACCCCTCTGTGAAGAAAGGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000164661.4 |
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| CDS-3UTR CAA 90 bp | TGCCACTCCCCTGGCCAAGCATATACAAACCATCACAATAAAGAGGGGACACATAATGGGCATGGAGTCTaGGTATCATACCCTGTGGCA | + |
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Preference number: 5 (lower is better) Translates to: CHSPGQAYTNHHNKEGTHNGHGV*VSYPVA Trigger: TGCCACAGGGTATGATACCAAGACTCCATGCCCATT...ATGTGTCCCCTCTTTATTGTGATGGTTTGTATATGCTTGGCCAGGGGAGTGGCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000164661.4 |
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| CDS CCA 90 bp | TACATATCCACCCTCACAATCAAGGAACACGCCAACTTGGCCAACTaGCTTCTCTATATAGTGTTCACCTCCTATGCGGGTGATGAGAAT | + |
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Preference number: 5 (lower is better) Translates to: YISTLTIKEHANLAN*LLYIVFTSYAGDEN Trigger: ATTCTCATCACCCGCATAGGAGGTGAACACTATATAGAGAAGCCAGTTGGCCAAGTTGGCGTGTTCCTTGATTGTGAGGGTGGATATGTA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000164661.4 |
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| CDS-3UTR CAA 90 bp | CACTCCCCTGGCCAAGCATATACAAACCATCACAATAAAGAGGGGACACATTATATGGCCTCTGGGACATaGTCATCAGCTCCCGATAAA | + |
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Preference number: 5 (lower is better) Translates to: HSPGQAYTNHHNKEGTHYMASGT*SSAPDK Trigger: TTTATCGGGAGCTGATGACAATGTCCCAGAGGCCAT...ATAATGTGTCCCCTCTTTATTGTGATGGTTTGTATATGCTTGGCCAGGGGAGTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000164661.4 |
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| CDS CCA 90 bp | TGTAATGATCTTCCTTTCTCAAACACTCAAGAAGAAATAGATCTGTaGGTGTCGCCGCATAGCTTCTCCCCCTTAACCAGGGATCCTTAC | + |
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Preference number: 5 (lower is better) Translates to: CNDLPFSNTQEEIDL*VSPHSFSPLTRDPY Trigger: GTAAGGATCCCTGGTTAAGGGGGAGAAGCTATGCGGCGACACCCACAGATCTATTTCTTCTTGAGTGTTTGAGAAAGGAAGATCATTACA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000164661.4 |
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| CDS-3UTR CAA 90 bp | CACTCCCCTGGCCAAGCATATACAAACCATCACAATAAAGAGGGGACACATTATACAGAGGGGTGGACATaGTTTTCCATACACTCTCTT | + |
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Preference number: 5 (lower is better) Translates to: HSPGQAYTNHHNKEGTHYTEGWT*FSIHSL Trigger: AAGAGAGTGTATGGAAAACAATGTCCACCCCTCTGT...ATAATGTGTCCCCTCTTTATTGTGATGGTTTGTATATGCTTGGCCAGGGGAGTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000164661.4 |
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| CDS TCA 90 bp | ACAAGGTCGTTCTCCTCTCTATTTCTACATAATTCTGCTGGATTTTaGGCCTCCGCCATAATGAGTCCATGTGCTTTAGAAGTTCCTCCA | + |
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Preference number: 5 (lower is better) Translates to: TRSFSSLFLHNSAGF*ASAIMSPCALEVPP Trigger: TGGAGGAACTTCTAAAGCACATGGACTCATTATGGCGGAGGCTCAAAATCCAGCAGAATTATGTAGAAATAGAGAGGAGAACGACCTTGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000164661.4 |
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| CDS-3UTR CAA 90 bp | ACTCCCCTGGCCAAGCATATACAAACCATCACAATAAAGAGGGGACACATTATCAGAAGATCATCTTTTTaGCCTTGTGGGTCACACACT | + |
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Preference number: 5 (lower is better) Translates to: TPLAKHIQTITIKRGHIIRRSSF*PCGSHT Trigger: AGTGTGTGACCCACAAGGCAAAAAAGATGATCTTCT...GATAATGTGTCCCCTCTTTATTGTGATGGTTTGTATATGCTTGGCCAGGGGAGT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000164661.4 |
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| CDS-3UTR CAA 90 bp | CATTCTAATAGTGCCACTCCCCTGGCCAAGCATATACAAACCATCACAATAAAGTTGTGGGTCACACACTaGTGCTCCTTAGAATTCAAA | + |
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Preference number: 5 (lower is better) Translates to: HSNSATPLAKHIQTITIKLWVTH*CSLEFK Trigger: TTTGAATTCTAAGGAGCACAAGTGTGTGACCCACAA...CTTTATTGTGATGGTTTGTATATGCTTGGCCAGGGGAGTGGCACTATTAGAATG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000164661.4 |
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| CDS CCA 72 bp | CTGAACAAGTCATCCAAGTCCTGCACCAGCAGCTCCTaGTATGGCCTCTGGGACATTGTCATCAGCTCCCGA | + |
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Preference number: 6 (lower is better) Translates to: LNKSSKSCTSSS*YGLWDIVISSR Trigger: TCGGGAGCTGATGACAATGTCCCAGAGGCCATACCAGGAGCTGCTGGTGCAGGACTTGGATGACTTGTTCAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000164661.4 |
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| CDS CCA 72 bp | CAAGTCATCCAAGTCCTGCACCAGCAGCTCCTGGTATaGCCTCTGGGACATTGTCATCAGCTCCCGATAAAC | + |
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Preference number: 6 (lower is better) Translates to: QVIQVLHQQLLV*PLGHCHQLPIN Trigger: GTTTATCGGGAGCTGATGACAATGTCCCAGAGGCCATACCAGGAGCTGCTGGTGCAGGACTTGGATGACTTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000164661.4 |
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| CDS CCA 72 bp | AAGGAGTTGAGCCTTGCAGTCAGCCCAGGAATGGAATaGGCATGGAGTCTTGGTATCATACCCTGTGGCATG | + |
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Preference number: 6 (lower is better) Translates to: KELSLAVSPGME*AWSLGIIPCGM Trigger: CATGCCACAGGGTATGATACCAAGACTCCATGCCCATTCCATTCCTGGGCTGACTGCAAGGCTCAACTCCTT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000164661.4 |
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| CDS CAA 90 bp | TCCCTTTCTTCACAGAGGGGTGGACATTGTTTTCCATACACTCTCTaGATCACTTCCTCCCGTAGCTTCACGGACAACCACCACAAGGTC | + |
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Preference number: 6 (lower is better) Translates to: SLSSQRGGHCFPYTL*ITSSRSFTDNHHKV Trigger: GACCTTGTGGTGGTTGTCCGTGAAGCTACGGGAGGAAGTGATCAAGAGAGTGTATGGAAAACAATGTCCACCCCTCTGTGAAGAAAGGGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000164661.4 |
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| CDS CAA 90 bp | CATCCAAGTCCTGCACCAGCAGCTCCTGGTATGGCCTCTGGGACATaGTCATCAGCTCCCGATAAACCTCTATTAGTTGATTTCTCTCGT | + |
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Preference number: 6 (lower is better) Translates to: HPSPAPAAPGMASGT*SSAPDKPLLVDFSR Trigger: ACGAGAGAAATCAACTAATAGAGGTTTATCGGGAGCTGATGACAATGTCCCAGAGGCCATACCAGGAGCTGCTGGTGCAGGACTTGGATG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000164661.4 |
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| CDS CCA 72 bp | ACCCTCACAATCAAGGAACACGCCAACTTGGCCAACTaGCTTCTCTATATAGTGTTCACCTCCTATGCGGGT | + |
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Preference number: 6 (lower is better) Translates to: TLTIKEHANLAN*LLYIVFTSYAG Trigger: ACCCGCATAGGAGGTGAACACTATATAGAGAAGCCAGTTGGCCAAGTTGGCGTGTTCCTTGATTGTGAGGGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000164661.4 |
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| CDS CAA 72 bp | TCACAGAGGGGTGGACATTGTTTTCCATACACTCTCTaGATCACTTCCTCCCGTAGCTTCACGGACAACCAC | + |
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Preference number: 6 (lower is better) Translates to: SQRGGHCFPYTL*ITSSRSFTDNH Trigger: GTGGTTGTCCGTGAAGCTACGGGAGGAAGTGATCAAGAGAGTGTATGGAAAACAATGTCCACCCCTCTGTGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000164661.4 |
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| CDS CCA 72 bp | CTTCCTTTCTCAAACACTCAAGAAGAAATAGATCTGTaGGTGTCGCCGCATAGCTTCTCCCCCTTAACCAGG | + |
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Preference number: 6 (lower is better) Translates to: LPFSNTQEEIDL*VSPHSFSPLTR Trigger: CCTGGTTAAGGGGGAGAAGCTATGCGGCGACACCCACAGATCTATTTCTTCTTGAGTGTTTGAGAAAGGAAG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000164661.4 |
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| CDS CAA 90 bp | CACGAAACTTACATATCCACCCTCACAATCAAGGAACACGCCAACTaGGCCAACTGGCTTCTCTATATAGTGTTCACCTCCTATGCGGGT | + |
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Preference number: 6 (lower is better) Translates to: HETYISTLTIKEHAN*ANWLLYIVFTSYAG Trigger: ACCCGCATAGGAGGTGAACACTATATAGAGAAGCCAGTTGGCCAAGTTGGCGTGTTCCTTGATTGTGAGGGTGGATATGTAAGTTTCGTG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000164661.4 |
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| CDS TCA 72 bp | ATGGTTGCATACACATGGGGCAGTAGGCAGGAAATTTaGTGTCTTCTTGAGAAAGTAAGAGACATGCCTCGC | + |
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Preference number: 6 (lower is better) Translates to: MVAYTWGSRQEI*CLLEKVRDMPR Trigger: GCGAGGCATGTCTCTTACTTTCTCAAGAAGACATCAAATTTCCTGCCTACTGCCCCATGTGTATGCAACCAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000164661.4 |
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| CDS CCA 72 bp | CGATGGGTTTCAGCTGAATCCAGAGATGTGCTTTCATaGAGAAGTCTGATATCAAAAGGTCTGACTGAGGTG | + |
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Preference number: 6 (lower is better) Translates to: RWVSAESRDVLS*RSLISKGLTEV Trigger: CACCTCAGTCAGACCTTTTGATATCAGACTTCTCCATGAAAGCACATCTCTGGATTCAGCTGAAACCCATCG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000164661.4 |
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| CDS CAA 72 bp | TATGTGTTGATCCCTTTCTTCACAGAGGGGTGGACATaGTTTTCCATACACTCTCTTGATCACTTCCTCCCG | + |
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Preference number: 6 (lower is better) Translates to: YVLIPFFTEGWT*FSIHSLDHFLP Trigger: CGGGAGGAAGTGATCAAGAGAGTGTATGGAAAACAATGTCCACCCCTCTGTGAAGAAAGGGATCAACACATA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000164661.4 |
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| CDS CCA 72 bp | ACACTCTATGTGTTGATCCCTTTCTTCACAGAGGGGTaGACATTGTTTTCCATACACTCTCTTGATCACTTC | + |
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Preference number: 6 (lower is better) Translates to: TLYVLIPFFTEG*TLFSIHSLDHF Trigger: GAAGTGATCAAGAGAGTGTATGGAAAACAATGTCCACCCCTCTGTGAAGAAAGGGATCAACACATAGAGTGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000164661.4 |
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| CDS TCA 72 bp | TTCTCCTCTCTATTTCTACATAATTCTGCTGGATTTTaGGCCTCCGCCATAATGAGTCCATGTGCTTTAGAA | + |
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Preference number: 6 (lower is better) Translates to: FSSLFLHNSAGF*ASAIMSPCALE Trigger: TTCTAAAGCACATGGACTCATTATGGCGGAGGCTCAAAATCCAGCAGAATTATGTAGAAATAGAGAGGAGAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000164661.4 |
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