Pregenerated sensors for TRIM40 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000073399Ensembl transcript IDs: ENSMUST00000087158.11, ENSMUST00000172711.2
Found 78 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GAAGAGCTAGTACCCAATAAACCTGCCAAACTCCATAAGCTGAGGTaGGCTCACTCTGCTCTTTCATCCAGATGTTTCGATGCCCACGAG | + |
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Preference number: 1 (lower is better) Translates to: EELVPNKPAKLHKLR*AHSALSSRCFDAHE Trigger: CTCGTGGGCATCGAAACATCTGGATGAAAGAGCAGAGTGAGCCCACCTCAGCTTATGGAGTTTGGCAGGTTTATTGGGTACTAGCTCTTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000087158.11 ENSMUST00000172711.2 |
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| 3UTR CCA 90 bp | CTCACTCTGCTCTTTCATCCAGATGTTTCGATGCCCACGAGACCATaGGCAGTAGGTGCAATCATCAGCACACAGTTATATGGAGATCTG | + |
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Preference number: 1 (lower is better) Translates to: LTLLFHPDVSMPTRP*AVGAIISTQLYGDL Trigger: CAGATCTCCATATAACTGTGTGCTGATGATTGCACCTACTGCCCATGGTCTCGTGGGCATCGAAACATCTGGATGAAAGAGCAGAGTGAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000087158.11 ENSMUST00000172711.2 |
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| 3UTR GCA 90 bp | CTGAACATGAGGGTGAGGACTGTGGAAATCACCCTCAAGTCTGCATaGAACAGTCATAATGAATGGTCAGTGTGGGCTGTACAAACAGGA | + |
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Preference number: 1 (lower is better) Translates to: LNMRVRTVEITLKSA*NSHNEWSVWAVQTG Trigger: TCCTGTTTGTACAGCCCACACTGACCATTCATTATGACTGTTGCATGCAGACTTGAGGGTGATTTCCACAGTCCTCACCCTCATGTTCAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000087158.11 ENSMUST00000172711.2 |
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| 3UTR CCA 90 bp | ATCACCCTCAAGTCTGCATGCAACAGTCATAATGAATGGTCAGTGTaGGCTGTACAAACAGGAGGTTCTATCAGAGTCAGAAGAGCTAGT | + |
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Preference number: 1 (lower is better) Translates to: ITLKSACNSHNEWSV*AVQTGGSIRVRRAS Trigger: ACTAGCTCTTCTGACTCTGATAGAACCTCCTGTTTGTACAGCCCACACTGACCATTCATTATGACTGTTGCATGCAGACTTGAGGGTGAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000087158.11 ENSMUST00000172711.2 |
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| 3UTR CCA 90 bp | ACTGTGGAAATCACCCTCAAGTCTGCATGCAACAGTCATAATGAATaGTCAGTGTGGGCTGTACAAACAGGAGGTTCTATCAGAGTCAGA | + |
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Preference number: 1 (lower is better) Translates to: TVEITLKSACNSHNE*SVWAVQTGGSIRVR Trigger: TCTGACTCTGATAGAACCTCCTGTTTGTACAGCCCACACTGACCATTCATTATGACTGTTGCATGCAGACTTGAGGGTGATTTCCACAGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000087158.11 ENSMUST00000172711.2 |
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| 3UTR GCA 90 bp | AGCAAGAAAGCGTCTATGGCCACTAGAGTTGACCTTCATTACTTCTaGTATATTCCTTTAATGAGAAGCAAGTCACTGATGGCACTCATT | + |
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Preference number: 1 (lower is better) Translates to: SKKASMATRVDLHYF*YIPLMRSKSLMALI Trigger: AATGAGTGCCATCAGTGACTTGCTTCTCATTAAAGGAATATAGCAGAAGTAATGAAGGTCAACTCTAGTGGCCATAGACGCTTTCTTGCT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000087158.11 ENSMUST00000172711.2 |
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| 3UTR-3UTR CCA 90 bp | CCTGAACATGAGGGTGAGGACTGTGGAAATCACCCTCAAGTCTGCATGCAACAGGTCTGGTCACAGCAGTaGGAGCCACAAGCTCAAGTC | + |
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Preference number: 2 (lower is better) Translates to: PEHEGEDCGNHPQVCMQQVWSQQ*EPQAQV Trigger: GACTTGAGCTTGTGGCTCCCACTGCTGTGACCAGAC...CTGTTGCATGCAGACTTGAGGGTGATTTCCACAGTCCTCACCCTCATGTTCAGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000087158.11 ENSMUST00000172711.2 |
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| 3UTR-3UTR TCA 90 bp | TGCAACAGTCATAATGAATGGTCAGTGTGGGCTGTACAAACAGGAGGTTCTATCCCAAACTCCATAAGCTaGGGTGGGCTCACTCTGCTC | + |
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Preference number: 2 (lower is better) Translates to: CNSHNEWSVWAVQTGGSIPNSIS*GGLTLL Trigger: GAGCAGAGTGAGCCCACCTCAGCTTATGGAGTTTGG...GATAGAACCTCCTGTTTGTACAGCCCACACTGACCATTCATTATGACTGTTGCA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000087158.11 ENSMUST00000172711.2 |
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| 3UTR-3UTR TCA 90 bp | ACTCTGCTCTTTCATCCAGATGTTTCGATGCCCACGAGACCATGGGCAGTAGGTAGTTATATGGAGATCTaGAATGTCTGGTCACAGCAG | + |
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Preference number: 2 (lower is better) Translates to: TLLFHPDVSMPTRPWAVGSYMEI*NVWSQQ Trigger: CTGCTGTGACCAGACATTTCAGATCTCCATATAACT...ACCTACTGCCCATGGTCTCGTGGGCATCGAAACATCTGGATGAAAGAGCAGAGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000087158.11 ENSMUST00000172711.2 |
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| 3UTR-3UTR GCA 90 bp | CTCCAGAGGACAAAGTTACAAGTACCTGAACATGAGGGTGAGGACTGTGGAAATGAGGTGGGCTCACTCTaGTCTTTCATCCAGATGTTT | + |
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Preference number: 2 (lower is better) Translates to: LQRTKLQVPEHEGEDCGNEVGSL*SFIQMF Trigger: AAACATCTGGATGAAAGAGCAGAGTGAGCCCACCTC...ATTTCCACAGTCCTCACCCTCATGTTCAGGTACTTGTAACTTTGTCCTCTGGAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000087158.11 ENSMUST00000172711.2 |
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| 3UTR-3UTR TCA 90 bp | TGGTCAGTGTGGGCTGTACAAACAGGAGGTTCTATCAGAGTCAGAAGAGCTAGTAGTTATATGGAGATCTaGAATGTCTGGTCACAGCAG | + |
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Preference number: 2 (lower is better) Translates to: WSVWAVQTGGSIRVRRASSYMEI*NVWSQQ Trigger: CTGCTGTGACCAGACATTTCAGATCTCCATATAACT...ACTAGCTCTTCTGACTCTGATAGAACCTCCTGTTTGTACAGCCCACACTGACCA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000087158.11 ENSMUST00000172711.2 |
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| 3UTR-3UTR CCA 90 bp | CTGTGGAAATCACCCTCAAGTCTGCATGCAACAGTCATAATGAATGGTCAGTGTCCACAAGCTCAAGTCTaGCTTAGGAAGGAGATTATG | + |
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Preference number: 2 (lower is better) Translates to: LWKSPSSLHATVIMNGQCPQAQV*LRKEIM Trigger: CATAATCTCCTTCCTAAGCCAGACTTGAGCTTGTGG...ACACTGACCATTCATTATGACTGTTGCATGCAGACTTGAGGGTGATTTCCACAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000087158.11 ENSMUST00000172711.2 |
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| 3UTR-3UTR CCA 90 bp | ACAAAGTTACAAGTACCTGAACATGAGGGTGAGGACTGTGGAAATCACCCTCAACCACAAGCTCAAGTCTaGCTTAGGAAGGAGATTATG | + |
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Preference number: 2 (lower is better) Translates to: TKLQVPEHEGEDCGNHPQPQAQV*LRKEIM Trigger: CATAATCTCCTTCCTAAGCCAGACTTGAGCTTGTGG...TTGAGGGTGATTTCCACAGTCCTCACCCTCATGTTCAGGTACTTGTAACTTTGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000087158.11 ENSMUST00000172711.2 |
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| 3UTR-3UTR CCA 90 bp | TGGTCAGTGTGGGCTGTACAAACAGGAGGTTCTATCAGAGTCAGAAGAGCTAGTCAGCACACAGTTATATaGAGATCTGAAATGTCTGGT | + |
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Preference number: 2 (lower is better) Translates to: WSVWAVQTGGSIRVRRASQHTVI*RSEMSG Trigger: ACCAGACATTTCAGATCTCCATATAACTGTGTGCTG...ACTAGCTCTTCTGACTCTGATAGAACCTCCTGTTTGTACAGCCCACACTGACCA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000087158.11 ENSMUST00000172711.2 |
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| 3UTR CCA 72 bp | GTCTGGTCACAGCAGTGGGAGCCACAAGCTCAAGTCTaGCTTAGGAAGGAGATTATGTCCCAGCGTCAGAAG | + |
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Preference number: 3 (lower is better) Translates to: VWSQQWEPQAQV*LRKEIMSQRQK Trigger: CTTCTGACGCTGGGACATAATCTCCTTCCTAAGCCAGACTTGAGCTTGTGGCTCCCACTGCTGTGACCAGAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000087158.11 ENSMUST00000172711.2 |
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| 3UTR TCA 72 bp | TTCCAGTCCTTATGGAAACTATGGGCAGGGACAGGGTaGTTAGTGGGGGCATTTTCAGTTCCCAGAAGTATC | + |
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Preference number: 3 (lower is better) Translates to: FQSLWKLWAGTG*LVGAFSVPRSI Trigger: GATACTTCTGGGAACTGAAAATGCCCCCACTAATCACCCTGTCCCTGCCCATAGTTTCCATAAGGACTGGAA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000087158.11 |
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| 3UTR GCA 72 bp | AGGGTGAGGACTGTGGAAATCACCCTCAAGTCTGCATaGAACAGTCATAATGAATGGTCAGTGTGGGCTGTA | + |
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Preference number: 3 (lower is better) Translates to: RVRTVEITLKSA*NSHNEWSVWAV Trigger: TACAGCCCACACTGACCATTCATTATGACTGTTGCATGCAGACTTGAGGGTGATTTCCACAGTCCTCACCCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000087158.11 ENSMUST00000172711.2 |
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| 3UTR CCA 72 bp | ATGGGCAGTAGGTGCAATCATCAGCACACAGTTATATaGAGATCTGAAATGTCTGGTCACAGCAGTGGGAGC | + |
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Preference number: 3 (lower is better) Translates to: MGSRCNHQHTVI*RSEMSGHSSGS Trigger: GCTCCCACTGCTGTGACCAGACATTTCAGATCTCCATATAACTGTGTGCTGATGATTGCACCTACTGCCCAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000087158.11 ENSMUST00000172711.2 |
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| 3UTR TCA 72 bp | CCCTCAGCGTCCCCAACTTTAGCAAAAAGAGTCTCTTaGATGTGTCTATCAGCAAGAAAGCGTCTATGGCCA | + |
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Preference number: 3 (lower is better) Translates to: PSASPTLAKRVS*MCLSARKRLWP Trigger: TGGCCATAGACGCTTTCTTGCTGATAGACACATTCAAGAGACTCTTTTTGCTAAAGTTGGGGACGCTGAGGG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000087158.11 ENSMUST00000172711.2 |
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| 3UTR CCA 72 bp | CTCTTTCATCCAGATGTTTCGATGCCCACGAGACCATaGGCAGTAGGTGCAATCATCAGCACACAGTTATAT | + |
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Preference number: 3 (lower is better) Translates to: LFHPDVSMPTRP*AVGAIISTQLY Trigger: ATATAACTGTGTGCTGATGATTGCACCTACTGCCCATGGTCTCGTGGGCATCGAAACATCTGGATGAAAGAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000087158.11 ENSMUST00000172711.2 |
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| 3UTR CCA 72 bp | GTACCCAATAAACCTGCCAAACTCCATAAGCTGAGGTaGGCTCACTCTGCTCTTTCATCCAGATGTTTCGAT | + |
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Preference number: 3 (lower is better) Translates to: VPNKPAKLHKLR*AHSALSSRCFD Trigger: ATCGAAACATCTGGATGAAAGAGCAGAGTGAGCCCACCTCAGCTTATGGAGTTTGGCAGGTTTATTGGGTAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000087158.11 ENSMUST00000172711.2 |
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| 3UTR CCA 72 bp | ATCACCCTCAAGTCTGCATGCAACAGTCATAATGAATaGTCAGTGTGGGCTGTACAAACAGGAGGTTCTATC | + |
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Preference number: 3 (lower is better) Translates to: ITLKSACNSHNE*SVWAVQTGGSI Trigger: GATAGAACCTCCTGTTTGTACAGCCCACACTGACCATTCATTATGACTGTTGCATGCAGACTTGAGGGTGAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000087158.11 ENSMUST00000172711.2 |
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| 3UTR CCA 72 bp | AAGTCTGCATGCAACAGTCATAATGAATGGTCAGTGTaGGCTGTACAAACAGGAGGTTCTATCAGAGTCAGA | + |
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Preference number: 3 (lower is better) Translates to: KSACNSHNEWSV*AVQTGGSIRVR Trigger: TCTGACTCTGATAGAACCTCCTGTTTGTACAGCCCACACTGACCATTCATTATGACTGTTGCATGCAGACTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000087158.11 ENSMUST00000172711.2 |
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| CDS-3UTR GCA 90 bp | GGCTCACTCTGCTCTTTCATCCAGATGTTTCGATGCCCACGAGACCATGGGCAGGCTGGGTCAGGCACATaGGGCAGAAGAGATGTCTGC | + |
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Preference number: 4 (lower is better) Translates to: GSLCSFIQMFRCPRDHGQAGSGT*GRRDVC Trigger: GCAGACATCTCTTCTGCCGCATGTGCCTGACCCAGC...CTGCCCATGGTCTCGTGGGCATCGAAACATCTGGATGAAAGAGCAGAGTGAGCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000087158.11 ENSMUST00000172711.2 |
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| CDS-3UTR GCA 90 bp | GCTCACTCTGCTCTTTCATCCAGATGTTTCGATGCCCACGAGACCATGGGCAGTGATGTCTGCAGTCGGTaGTCACAGCCTCCTTCAGGG | + |
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Preference number: 4 (lower is better) Translates to: AHSALSSRCFDAHETMGSDVCSR*SQPPSG Trigger: CCCTGAAGGAGGCTGTGAGCACCGACTGCAGACATC...ACTGCCCATGGTCTCGTGGGCATCGAAACATCTGGATGAAAGAGCAGAGTGAGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000087158.11 ENSMUST00000172711.2 |
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| CDS-3UTR TCA 90 bp | GGCTCACTCTGCTCTTTCATCCAGATGTTTCGATGCCCACGAGACCATGGGCAGGAGAATCCCAGAGACTaGAGCCTTATCCATGTGCTG | + |
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Preference number: 4 (lower is better) Translates to: GSLCSFIQMFRCPRDHGQENPRD*SLIHVL Trigger: CAGCACATGGATAAGGCTTCAGTCTCTGGGATTCTC...CTGCCCATGGTCTCGTGGGCATCGAAACATCTGGATGAAAGAGCAGAGTGAGCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000087158.11 ENSMUST00000172711.2 |
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| CDS-3UTR TCA 90 bp | CCTGCCAAACTCCATAAGCTGAGGTGGGCTCACTCTGCTCTTTCATCCAGATGTTCCCAAGGTCCTTTCTaGGCTTCCTGCTTCTCCGGT | + |
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Preference number: 4 (lower is better) Translates to: PAKLHKLRWAHSALSSRCSQGPF*ASCFSG Trigger: ACCGGAGAAGCAGGAAGCTCAGAAAGGACCTTGGGA...ACATCTGGATGAAAGAGCAGAGTGAGCCCACCTCAGCTTATGGAGTTTGGCAGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000087158.11 ENSMUST00000172711.2 |
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| CDS-3UTR GCA 90 bp | CCTGAACATGAGGGTGAGGACTGTGGAAATCACCCTCAAGTCTGCATGCAACAGGAAGCCTTATCCATGTaGTGGGTCAGGCACATGCGG | + |
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Preference number: 4 (lower is better) Translates to: PEHEGEDCGNHPQVCMQQEALSM*WVRHMR Trigger: CCGCATGTGCCTGACCCAGCACATGGATAAGGCTTC...CTGTTGCATGCAGACTTGAGGGTGATTTCCACAGTCCTCACCCTCATGTTCAGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000087158.11 ENSMUST00000172711.2 |
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| CDS-3UTR CCA 90 bp | GCTCACTCTGCTCTTTCATCCAGATGTTTCGATGCCCACGAGACCATGGGCAGTTCTGGTAAGTCCTCTTaGTCCAGCCAATGCCATGGG | + |
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Preference number: 4 (lower is better) Translates to: AHSALSSRCFDAHETMGSSGKSS*SSQCHG Trigger: CCCATGGCATTGGCTGGACCAAGAGGACTTACCAGA...ACTGCCCATGGTCTCGTGGGCATCGAAACATCTGGATGAAAGAGCAGAGTGAGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000087158.11 ENSMUST00000172711.2 |
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| CDS-3UTR CCA 90 bp | TGGTCACAGCAGTGGGAGCCACAAGCTCAAGTCTGGCTTAGGAAGGAGATTATGTCTGGTAAGTCCTCTTaGTCCAGCCAATGCCATGGG | + |
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Preference number: 4 (lower is better) Translates to: WSQQWEPQAQVWLRKEIMSGKSS*SSQCHG Trigger: CCCATGGCATTGGCTGGACCAAGAGGACTTACCAGA...CATAATCTCCTTCCTAAGCCAGACTTGAGCTTGTGGCTCCCACTGCTGTGACCA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000087158.11 ENSMUST00000172711.2 |
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| CDS-3UTR CCA 90 bp | TCTGGTCACAGCAGTGGGAGCCACAAGCTCAAGTCTGGCTTAGGAAGGAGATTATGTCCAGTAAGTCACTaGCATCCTTCAGGGTGCTGG | + |
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Preference number: 4 (lower is better) Translates to: SGHSSGSHKLKSGLGRRLCPVSH*HPSGCW Trigger: CCAGCACCCTGAAGGATGCCAGTGACTTACTGGACA...TAATCTCCTTCCTAAGCCAGACTTGAGCTTGTGGCTCCCACTGCTGTGACCAGA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087158.11 |
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| CDS-3UTR TCA 90 bp | TCTGGTCACAGCAGTGGGAGCCACAAGCTCAAGTCTGGCTTAGGAAGGAGATTAGAGAATCCCAGAGACTaGAGCCTTATCCATGTGCTG | + |
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Preference number: 4 (lower is better) Translates to: SGHSSGSHKLKSGLGRRLENPRD*SLIHVL Trigger: CAGCACATGGATAAGGCTTCAGTCTCTGGGATTCTC...TAATCTCCTTCCTAAGCCAGACTTGAGCTTGTGGCTCCCACTGCTGTGACCAGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000087158.11 ENSMUST00000172711.2 |
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| CDS-3UTR GCA 90 bp | TGGTCAGTGTGGGCTGTACAAACAGGAGGTTCTATCAGAGTCAGAAGAGCTAGTGGCAGAAGAGATGTCTaGAGTCGGTGCTCACAGCCT | + |
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Preference number: 4 (lower is better) Translates to: WSVWAVQTGGSIRVRRASGRRDV*SRCSQP Trigger: AGGCTGTGAGCACCGACTGCAGACATCTCTTCTGCC...ACTAGCTCTTCTGACTCTGATAGAACCTCCTGTTTGTACAGCCCACACTGACCA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000087158.11 ENSMUST00000172711.2 |
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| CDS-3UTR GCA 90 bp | GCAATCATCAGCACACAGTTATATGGAGATCTGAAATGTCTGGTCACAGCAGTGGATGTCTGCAGTCGGTaGTCACAGCCTCCTTCAGGG | + |
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Preference number: 4 (lower is better) Translates to: AIISTQLYGDLKCLVTAVDVCSR*SQPPSG Trigger: CCCTGAAGGAGGCTGTGAGCACCGACTGCAGACATC...CACTGCTGTGACCAGACATTTCAGATCTCCATATAACTGTGTGCTGATGATTGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000087158.11 ENSMUST00000172711.2 |
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| CDS-3UTR GCA 90 bp | CTCCAGAGGACAAAGTTACAAGTACCTGAACATGAGGGTGAGGACTGTGGAAATGAAGCCTTATCCATGTaGTGGGTCAGGCACATGCGG | + |
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Preference number: 4 (lower is better) Translates to: LQRTKLQVPEHEGEDCGNEALSM*WVRHMR Trigger: CCGCATGTGCCTGACCCAGCACATGGATAAGGCTTC...ATTTCCACAGTCCTCACCCTCATGTTCAGGTACTTGTAACTTTGTCCTCTGGAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000087158.11 ENSMUST00000172711.2 |
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| CDS-3UTR CCA 90 bp | CCTGCCAAACTCCATAAGCTGAGGTGGGCTCACTCTGCTCTTTCATCCAGATGTTGTCCAGTAAGTCACTaGCATCCTCCTCTGGTAAGT | + |
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Preference number: 4 (lower is better) Translates to: PAKLHKLRWAHSALSSRCCPVSH*HPPLVS Trigger: ACTTACCAGAGGAGGATGCCAGTGACTTACTGGACA...ACATCTGGATGAAAGAGCAGAGTGAGCCCACCTCAGCTTATGGAGTTTGGCAGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172711.2 |
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| CDS-3UTR TCA 90 bp | ACAAAGTTACAAGTACCTGAACATGAGGGTGAGGACTGTGGAAATCACCCTCAATCCCAAGGTCCTTTCTaGGCTTCCTGCTTCTCCGGT | + |
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Preference number: 4 (lower is better) Translates to: TKLQVPEHEGEDCGNHPQSQGPF*ASCFSG Trigger: ACCGGAGAAGCAGGAAGCTCAGAAAGGACCTTGGGA...TTGAGGGTGATTTCCACAGTCCTCACCCTCATGTTCAGGTACTTGTAACTTTGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000087158.11 ENSMUST00000172711.2 |
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| CDS-3UTR GCA 90 bp | CTGTGGAAATCACCCTCAAGTCTGCATGCAACAGTCATAATGAATGGTCAGTGTGGCAGAAGAGATGTCTaGAGTCGGTGCTCACAGCCT | + |
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Preference number: 4 (lower is better) Translates to: LWKSPSSLHATVIMNGQCGRRDV*SRCSQP Trigger: AGGCTGTGAGCACCGACTGCAGACATCTCTTCTGCC...ACACTGACCATTCATTATGACTGTTGCATGCAGACTTGAGGGTGATTTCCACAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000087158.11 ENSMUST00000172711.2 |
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| CDS-3UTR GCA 90 bp | CTGTGGAAATCACCCTCAAGTCTGCATGCAACAGTCATAATGAATGGTCAGTGTTGGCATCCTTCAGGGTaGTGGCATCCAGATCCTTGG | + |
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Preference number: 4 (lower is better) Translates to: LWKSPSSLHATVIMNGQCWHPSG*WHPDPW Trigger: CCAAGGATCTGGATGCCAGCACCCTGAAGGATGCCA...ACACTGACCATTCATTATGACTGTTGCATGCAGACTTGAGGGTGATTTCCACAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087158.11 |
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| CDS-3UTR CCA 90 bp | ACTCTGCTCTTTCATCCAGATGTTTCGATGCCCACGAGACCATGGGCAGTAGGTTCCTTGGTTTGGTCTTaGTTCTGCAGGTCAGTTCTT | + |
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Preference number: 4 (lower is better) Translates to: TLLFHPDVSMPTRPWAVGSLVWS*FCRSVL Trigger: AAGAACTGACCTGCAGAACCAAGACCAAACCAAGGA...ACCTACTGCCCATGGTCTCGTGGGCATCGAAACATCTGGATGAAAGAGCAGAGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000087158.11 ENSMUST00000172711.2 |
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| CDS-3UTR TCA 90 bp | GCAATCATCAGCACACAGTTATATGGAGATCTGAAATGTCTGGTCACAGCAGTGCAGAAACCAGGATGCTaGGCTGTGTTACTGCCTCAG | + |
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Preference number: 4 (lower is better) Translates to: AIISTQLYGDLKCLVTAVQKPGC*AVLLPQ Trigger: CTGAGGCAGTAACACAGCTCAGCATCCTGGTTTCTG...CACTGCTGTGACCAGACATTTCAGATCTCCATATAACTGTGTGCTGATGATTGC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087158.11 |
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| CDS-3UTR GCA 90 bp | TGCAACAGTCATAATGAATGGTCAGTGTGGGCTGTACAAACAGGAGGTTCTATCTCTTGGTCCAGCCAATaGCATGGGAGAGCCTTCAGT | + |
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Preference number: 4 (lower is better) Translates to: CNSHNEWSVWAVQTGGSISWSSQ*HGRAFS Trigger: ACTGAAGGCTCTCCCATGGCATTGGCTGGACCAAGA...GATAGAACCTCCTGTTTGTACAGCCCACACTGACCATTCATTATGACTGTTGCA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000087158.11 ENSMUST00000172711.2 |
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| CDS-3UTR GCA 90 bp | TTCTGCTATATTCCTTTAATGAGAAGCAAGTCACTGATGGCACTCATTCTCCAGTCTTGGTCCAGCCAATaGCATGGGAGAGCCTTCAGT | + |
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Preference number: 4 (lower is better) Translates to: FCYIPLMRSKSLMALILQSWSSQ*HGRAFS Trigger: ACTGAAGGCTCTCCCATGGCATTGGCTGGACCAAGA...CTGGAGAATGAGTGCCATCAGTGACTTGCTTCTCATTAAAGGAATATAGCAGAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000087158.11 ENSMUST00000172711.2 |
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| CDS-3UTR CCA 90 bp | CTCCAGAGGACAAAGTTACAAGTACCTGAACATGAGGGTGAGGACTGTGGAAATTCCTTGGTTTGGTCTTaGTTCTGCAGGTCAGTTCTT | + |
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Preference number: 4 (lower is better) Translates to: LQRTKLQVPEHEGEDCGNSLVWS*FCRSVL Trigger: AAGAACTGACCTGCAGAACCAAGACCAAACCAAGGA...ATTTCCACAGTCCTCACCCTCATGTTCAGGTACTTGTAACTTTGTCCTCTGGAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000087158.11 ENSMUST00000172711.2 |
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| CDS TCA 90 bp | GGAACATGGCTTCCTGCAGACTGGGCAGCTGAGAATCCCAGAGACTaGAGCCTTATCCATGTGCTGGGTCAGGCACATGCGGCAGAAGAG | + |
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Preference number: 5 (lower is better) Translates to: GTWLPADWAAENPRD*SLIHVLGQAHAAEE Trigger: CTCTTCTGCCGCATGTGCCTGACCCAGCACATGGATAAGGCTTCAGTCTCTGGGATTCTCAGCTGCCCAGTCTGCAGGAAGCCATGTTCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000087158.11 ENSMUST00000172711.2 |
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| CDS GCA 90 bp | GAATCCCAGAGACTGAAGCCTTATCCATGTGCTGGGTCAGGCACATaGGGCAGAAGAGATGTCTGCAGTCGGTGCTCACAGCCTCCTTCA | + |
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Preference number: 5 (lower is better) Translates to: ESQRLKPYPCAGSGT*GRRDVCSRCSQPPS Trigger: TGAAGGAGGCTGTGAGCACCGACTGCAGACATCTCTTCTGCCGCATGTGCCTGACCCAGCACATGGATAAGGCTTCAGTCTCTGGGATTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000087158.11 ENSMUST00000172711.2 |
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| CDS CCA 90 bp | CTCCTGTCCAGTAAGTCACTGGCATCCTCCTCTGGTAAGTCCTCTTaGTCCAGCCAATGCCATGGGAGAGCCTTCAGTTGTTCCTTGGTT | + |
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Preference number: 5 (lower is better) Translates to: LLSSKSLASSSGKSS*SSQCHGRAFSCSLV Trigger: AACCAAGGAACAACTGAAGGCTCTCCCATGGCATTGGCTGGACCAAGAGGACTTACCAGAGGAGGATGCCAGTGACTTACTGGACAGGAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172711.2 |
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| CDS-3UTR CAA 90 bp | GCTCACTCTGCTCTTTCATCCAGATGTTTCGATGCCCACGAGACCATGGGCAGTGGACAAATGTCCTGGTaGTCCTTGTCAAGAGAGCCC | + |
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Preference number: 5 (lower is better) Translates to: AHSALSSRCFDAHETMGSGQMSW*SLSREP Trigger: GGGCTCTCTTGACAAGGACAACCAGGACATTTGTCC...ACTGCCCATGGTCTCGTGGGCATCGAAACATCTGGATGAAAGAGCAGAGTGAGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000087158.11 ENSMUST00000172711.2 |
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| CDS GCA 90 bp | AAGTCACTGGCATCCTCCTCTGGTAAGTCCTCTTGGTCCAGCCAATaGCATGGGAGAGCCTTCAGTTGTTCCTTGGTTTGGTCTTGGTTC | + |
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Preference number: 5 (lower is better) Translates to: KSLASSSGKSSWSSQ*HGRAFSCSLVWSWF Trigger: GAACCAAGACCAAACCAAGGAACAACTGAAGGCTCTCCCATGGCATTGGCTGGACCAAGAGGACTTACCAGAGGAGGATGCCAGTGACTT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172711.2 |
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| CDS CCA 90 bp | GAAGTCCTTCTAATTTCTGTGGTGCGCTCCTGTCCAGTAAGTCACTaGCATCCTCCTCTGGTAAGTCCTCTTGGTCCAGCCAATGCCATG | + |
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Preference number: 5 (lower is better) Translates to: EVLLISVVRSCPVSH*HPPLVSPLGPANAM Trigger: CATGGCATTGGCTGGACCAAGAGGACTTACCAGAGGAGGATGCCAGTGACTTACTGGACAGGAGCGCACCACAGAAATTAGAAGGACTTC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172711.2 |
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| CDS-3UTR CAA 90 bp | TGGTCACAGCAGTGGGAGCCACAAGCTCAAGTCTGGCTTAGGAAGGAGATTATGGGACAAATGTCCTGGTaGTCCTTGTCAAGAGAGCCC | + |
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Preference number: 5 (lower is better) Translates to: WSQQWEPQAQVWLRKEIMGQMSW*SLSREP Trigger: GGGCTCTCTTGACAAGGACAACCAGGACATTTGTCC...CATAATCTCCTTCCTAAGCCAGACTTGAGCTTGTGGCTCCCACTGCTGTGACCA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000087158.11 ENSMUST00000172711.2 |
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| CDS TCA 90 bp | TGTTCCTTGGTTTGGTCTTGGTTCTGCAGGTCAGTTCTTAGCCTGTaGCACTCACAATCCACCTGCAGAGCCTGCAGCATCTTCTTTTCC | + |
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Preference number: 5 (lower is better) Translates to: CSLVWSWFCRSVLSL*HSQSTCRACSIFFS Trigger: GGAAAAGAAGATGCTGCAGGCTCTGCAGGTGGATTGTGAGTGTCACAGGCTAAGAACTGACCTGCAGAACCAAGACCAAACCAAGGAACA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000087158.11 ENSMUST00000172711.2 |
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| CDS-3UTR CAA 90 bp | ATCATCAGCACACAGTTATATGGAGATCTGAAATGTCTGGTCACAGCAGTGGGACTGGTGTTCAGGGGATaGGAGGCATTCCTCACACAA | + |
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Preference number: 5 (lower is better) Translates to: IISTQLYGDLKCLVTAVGLVFRG*EAFLTQ Trigger: TTGTGTGAGGAATGCCTCCAATCCCCTGAACACCAG...TCCCACTGCTGTGACCAGACATTTCAGATCTCCATATAACTGTGTGCTGATGAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000087158.11 ENSMUST00000172711.2 |
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| CDS-3UTR CAA 90 bp | GGGCTGTACAAACAGGAGGTTCTATCAGAGTCAGAAGAGCTAGTACCCAATAAACTGGTGTTCAGGGGATaGGAGGCATTCCTCACACAA | + |
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Preference number: 5 (lower is better) Translates to: GLYKQEVLSESEELVPNKLVFRG*EAFLTQ Trigger: TTGTGTGAGGAATGCCTCCAATCCCCTGAACACCAG...TTTATTGGGTACTAGCTCTTCTGACTCTGATAGAACCTCCTGTTTGTACAGCCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000087158.11 ENSMUST00000172711.2 |
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| CDS-3UTR CAA 90 bp | CTCCAGAGGACAAAGTTACAAGTACCTGAACATGAGGGTGAGGACTGTGGAAATCAGTTGTTCCTTGGTTaGGTCTTGGTTCTGCAGGTC | + |
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Preference number: 5 (lower is better) Translates to: LQRTKLQVPEHEGEDCGNQLFLG*VLVLQV Trigger: GACCTGCAGAACCAAGACCAAACCAAGGAACAACTG...ATTTCCACAGTCCTCACCCTCATGTTCAGGTACTTGTAACTTTGTCCTCTGGAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000087158.11 ENSMUST00000172711.2 |
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| CDS-3UTR CAA 90 bp | ATGAGGGTGAGGACTGTGGAAATCACCCTCAAGTCTGCATGCAACAGTCATAATTGGGAGAGCCTTCAGTaGTTCCTTGGTTTGGTCTTG | + |
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Preference number: 5 (lower is better) Translates to: MRVRTVEITLKSACNSHNWESLQ*FLGLVL Trigger: CAAGACCAAACCAAGGAACAACTGAAGGCTCTCCCA...ATTATGACTGTTGCATGCAGACTTGAGGGTGATTTCCACAGTCCTCACCCTCAT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000087158.11 ENSMUST00000172711.2 |
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| CDS-3UTR CAA 90 bp | CTCCAGAGGACAAAGTTACAAGTACCTGAACATGAGGGTGAGGACTGTGGAAATGAGAAGCTAAAGATCTaGGCCACCTCCTCTGGTAAG | + |
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Preference number: 5 (lower is better) Translates to: LQRTKLQVPEHEGEDCGNEKLKI*ATSSGK Trigger: CTTACCAGAGGAGGTGGCCAAGATCTTTAGCTTCTC...ATTTCCACAGTCCTCACCCTCATGTTCAGGTACTTGTAACTTTGTCCTCTGGAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087158.11 |
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| CDS-3UTR CAA 90 bp | TTTTACAATTTTCCAGTCCTTATGGAAACTATGGGCAGGGACAGGGTGATTAGTCTGGCATCCAGATCCTaGGCCATCCTTTCCAGGCCA | + |
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Preference number: 5 (lower is better) Translates to: FYNFPVLMETMGRDRVISLASRS*AILSRP Trigger: TGGCCTGGAAAGGATGGCCAAGGATCTGGATGCCAG...ACTAATCACCCTGTCCCTGCCCATAGTTTCCATAAGGACTGGAAAATTGTAAAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000087158.11 |
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| CDS-3UTR CAA 90 bp | TGCAACAGTCATAATGAATGGTCAGTGTGGGCTGTACAAACAGGAGGTTCTATCCAGTTGTTCCTTGGTTaGGTCTTGGTTCTGCAGGTC | + |
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Preference number: 5 (lower is better) Translates to: CNSHNEWSVWAVQTGGSIQLFLG*VLVLQV Trigger: GACCTGCAGAACCAAGACCAAACCAAGGAACAACTG...GATAGAACCTCCTGTTTGTACAGCCCACACTGACCATTCATTATGACTGTTGCA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000087158.11 ENSMUST00000172711.2 |
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| CDS-3UTR CAA 90 bp | GCAATCATCAGCACACAGTTATATGGAGATCTGAAATGTCTGGTCACAGCAGTGTGGGAGAGCCTTCAGTaGTTCCTTGGTTTGGTCTTG | + |
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Preference number: 5 (lower is better) Translates to: AIISTQLYGDLKCLVTAVWESLQ*FLGLVL Trigger: CAAGACCAAACCAAGGAACAACTGAAGGCTCTCCCA...CACTGCTGTGACCAGACATTTCAGATCTCCATATAACTGTGTGCTGATGATTGC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000087158.11 ENSMUST00000172711.2 |
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| CDS-3UTR CAA 90 bp | TTCTGCTATATTCCTTTAATGAGAAGCAAGTCACTGATGGCACTCATTCTCCAGCTGAGCCTTCAGCTGTaGAAGGTTCCCAAGGTCCTT | + |
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Preference number: 5 (lower is better) Translates to: FCYIPLMRSKSLMALILQLSLQL*KVPKVL Trigger: AAGGACCTTGGGAACCTTCAACAGCTGAAGGCTCAG...CTGGAGAATGAGTGCCATCAGTGACTTGCTTCTCATTAAAGGAATATAGCAGAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000087158.11 ENSMUST00000172711.2 |
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| CDS GCA 72 bp | TGTGCTGGGTCAGGCACATGCGGCAGAAGAGATGTCTaGAGTCGGTGCTCACAGCCTCCTTCAGGGGATCCA | + |
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Preference number: 6 (lower is better) Translates to: CAGSGTCGRRDV*SRCSQPPSGDP Trigger: TGGATCCCCTGAAGGAGGCTGTGAGCACCGACTGCAGACATCTCTTCTGCCGCATGTGCCTGACCCAGCACA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000087158.11 ENSMUST00000172711.2 |
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| CDS TCA 72 bp | CTTCCTGCAGACTGGGCAGCTGAGAATCCCAGAGACTaGAGCCTTATCCATGTGCTGGGTCAGGCACATGCG | + |
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Preference number: 6 (lower is better) Translates to: LPADWAAENPRD*SLIHVLGQAHA Trigger: CGCATGTGCCTGACCCAGCACATGGATAAGGCTTCAGTCTCTGGGATTCTCAGCTGCCCAGTCTGCAGGAAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000087158.11 ENSMUST00000172711.2 |
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| CDS TCA 72 bp | CCCCCTCGGAACATGGCTTCCTGCAGACTGGGCAGCTaGGAATCCCAGAGACTGAAGCCTTATCCATGTGCT | + |
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Preference number: 6 (lower is better) Translates to: PPRNMASCRLGS*ESQRLKPYPCA Trigger: AGCACATGGATAAGGCTTCAGTCTCTGGGATTCTCAGCTGCCCAGTCTGCAGGAAGCCATGTTCCGAGGGGG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000087158.11 ENSMUST00000172711.2 |
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| CDS GCA 72 bp | AGACTGAAGCCTTATCCATGTGCTGGGTCAGGCACATaGGGCAGAAGAGATGTCTGCAGTCGGTGCTCACAG | + |
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Preference number: 6 (lower is better) Translates to: RLKPYPCAGSGT*GRRDVCSRCSQ Trigger: CTGTGAGCACCGACTGCAGACATCTCTTCTGCCGCATGTGCCTGACCCAGCACATGGATAAGGCTTCAGTCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000087158.11 ENSMUST00000172711.2 |
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| CDS GCA 72 bp | GCCACCTCCTCTGGTAAGTCCTCTTGGTCCAGCCAATaGCATGGGAGAGCCTTCAGTTGTTCCTTGGTTTGG | + |
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Preference number: 6 (lower is better) Translates to: ATSSGKSSWSSQ*HGRAFSCSLVW Trigger: CCAAACCAAGGAACAACTGAAGGCTCTCCCATGGCATTGGCTGGACCAAGAGGACTTACCAGAGGAGGTGGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087158.11 |
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| CDS GCA 72 bp | GCATCCTCCTCTGGTAAGTCCTCTTGGTCCAGCCAATaGCATGGGAGAGCCTTCAGTTGTTCCTTGGTTTGG | + |
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Preference number: 6 (lower is better) Translates to: ASSSGKSSWSSQ*HGRAFSCSLVW Trigger: CCAAACCAAGGAACAACTGAAGGCTCTCCCATGGCATTGGCTGGACCAAGAGGACTTACCAGAGGAGGATGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172711.2 |
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| CDS CCA 72 bp | CTGAGAATCCCAGAGACTGAAGCCTTATCCATGTGCTaGGTCAGGCACATGCGGCAGAAGAGATGTCTGCAG | + |
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Preference number: 6 (lower is better) Translates to: LRIPETEALSMC*VRHMRQKRCLQ Trigger: CTGCAGACATCTCTTCTGCCGCATGTGCCTGACCCAGCACATGGATAAGGCTTCAGTCTCTGGGATTCTCAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000087158.11 ENSMUST00000172711.2 |
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| CDS CCA 72 bp | CTAATTTCTGTGGTGCGCTCCTGTCCAGTAAGTCACTaGCATCCTTCAGGGTGCTGGCATCCAGATCCTTGG | + |
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Preference number: 6 (lower is better) Translates to: LISVVRSCPVSH*HPSGCWHPDPW Trigger: CCAAGGATCTGGATGCCAGCACCCTGAAGGATGCCAGTGACTTACTGGACAGGAGCGCACCACAGAAATTAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087158.11 |
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| CDS CCA 72 bp | CTAATTTCTGTGGTGCGCTCCTGTCCAGTAAGTCACTaGCATCCTCCTCTGGTAAGTCCTCTTGGTCCAGCC | + |
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Preference number: 6 (lower is better) Translates to: LISVVRSCPVSH*HPPLVSPLGPA Trigger: GGCTGGACCAAGAGGACTTACCAGAGGAGGATGCCAGTGACTTACTGGACAGGAGCGCACCACAGAAATTAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172711.2 |
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| CDS GCA 72 bp | TTCCAGGCCAGAAACCAGGATGCTGAGCTGTGTTACTaGCTCAGAGAAGCTAAAGATCTTGGCCACCTCCTC | + |
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Preference number: 6 (lower is better) Translates to: FQARNQDAELCY*LREAKDLGHLL Trigger: GAGGAGGTGGCCAAGATCTTTAGCTTCTCTGAGGCAGTAACACAGCTCAGCATCCTGGTTTCTGGCCTGGAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087158.11 |
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| CDS CCA 72 bp | CCAGCCAATGCCATGGGAGAGCCTTCAGTTGTTCCTTaGTTTGGTCTTGGTTCTGCAGGTCAGTTCTTAGCC | + |
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Preference number: 6 (lower is better) Translates to: PANAMGEPSVVP*FGLGSAGQFLA Trigger: GGCTAAGAACTGACCTGCAGAACCAAGACCAAACCAAGGAACAACTGAAGGCTCTCCCATGGCATTGGCTGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000087158.11 ENSMUST00000172711.2 |
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| CDS CCA 72 bp | CTAAAGATCTTGGCCACCTCCTCTGGTAAGTCCTCTTaGTCCAGCCAATGCCATGGGAGAGCCTTCAGTTGT | + |
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Preference number: 6 (lower is better) Translates to: LKILATSSGKSS*SSQCHGRAFSC Trigger: ACAACTGAAGGCTCTCCCATGGCATTGGCTGGACCAAGAGGACTTACCAGAGGAGGTGGCCAAGATCTTTAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087158.11 |
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| CDS CCA 72 bp | AGTAAGTCACTGGCATCCTCCTCTGGTAAGTCCTCTTaGTCCAGCCAATGCCATGGGAGAGCCTTCAGTTGT | + |
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Preference number: 6 (lower is better) Translates to: SKSLASSSGKSS*SSQCHGRAFSC Trigger: ACAACTGAAGGCTCTCCCATGGCATTGGCTGGACCAAGAGGACTTACCAGAGGAGGATGCCAGTGACTTACT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172711.2 |
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| CDS CAA 72 bp | CTCTTGGTCCAGCCAATGCCATGGGAGAGCCTTCAGTaGTTCCTTGGTTTGGTCTTGGTTCTGCAGGTCAGT | + |
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Preference number: 6 (lower is better) Translates to: LLVQPMPWESLQ*FLGLVLVLQVS Trigger: ACTGACCTGCAGAACCAAGACCAAACCAAGGAACAACTGAAGGCTCTCCCATGGCATTGGCTGGACCAAGAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000087158.11 ENSMUST00000172711.2 |
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| CDS CAA 72 bp | CTGAGCTGTGTTACTGCCTCAGAGAAGCTAAAGATCTaGGCCACCTCCTCTGGTAAGTCCTCTTGGTCCAGC | + |
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Preference number: 6 (lower is better) Translates to: LSCVTASEKLKI*ATSSGKSSWSS Trigger: GCTGGACCAAGAGGACTTACCAGAGGAGGTGGCCAAGATCTTTAGCTTCTCTGAGGCAGTAACACAGCTCAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087158.11 |
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| CDS CAA 90 bp | ACCAGGATGCTGAGCTGTGTTACTGCCTCAGAGAAGCTAAAGATCTaGGCCACCTCCTCTGGTAAGTCCTCTTGGTCCAGCCAATGCCAT | + |
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Preference number: 6 (lower is better) Translates to: TRMLSCVTASEKLKI*ATSSGKSSWSSQCH Trigger: ATGGCATTGGCTGGACCAAGAGGACTTACCAGAGGAGGTGGCCAAGATCTTTAGCTTCTCTGAGGCAGTAACACAGCTCAGCATCCTGGT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087158.11 |
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| CDS CAA 72 bp | TCCAGCCAATGCCATGGGAGAGCCTTCAGTTGTTCCTaGGTTTGGTCTTGGTTCTGCAGGTCAGTTCTTAGC | + |
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Preference number: 6 (lower is better) Translates to: SSQCHGRAFSCS*VWSWFCRSVLS Trigger: GCTAAGAACTGACCTGCAGAACCAAGACCAAACCAAGGAACAACTGAAGGCTCTCCCATGGCATTGGCTGGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000087158.11 ENSMUST00000172711.2 |
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