Pregenerated sensors for TRIM38 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000064140Ensembl transcript IDs: ENSMUST00000074067.4, ENSMUST00000223911.2, ENSMUST00000226039.2
Found 50 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | ATCGTCTTCACATCGAAGTACAGCTCAGACACATTACATTTAGTGTaGACCTTCAGGGGATCAGCCTTCAGTGGGTTTCGCTTCATGGCC | + |
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Preference number: 1 (lower is better) Translates to: IVFTSKYSSDTLHLV*TFRGSAFSGFRFMA Trigger: GGCCATGAAGCGAAACCCACTGAAGGCTGATCCCCTGAAGGTTCACACTAAATGTAATGTGTCTGAGCTGTACTTCGATGTGAAGACGAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000223911.2 |
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| 3UTR GCA 90 bp | GCCCCTGTGCACATTCTCTACACAGACTCCCAAATCCCAACTGGTTaGATTCTCAACAGAGACTTCAAAGTAATATCTCCCCGAAGTAAA | + |
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Preference number: 1 (lower is better) Translates to: APVHILYTDSQIPTG*ILNRDFKVISPRSK Trigger: TTTACTTCGGGGAGATATTACTTTGAAGTCTCTGTTGAGAATGCAACCAGTTGGGATTTGGGAGTCTGTGTAGAGAATGTGCACAGGGGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000223911.2 |
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| 3UTR-3UTR CCA 90 bp | CCAAATCCCAACTGGTTGCATTCTCAACAGAGACTTCAAAGTAATATCTCCCCGAGAGCTAGGTCAAGGTaGGCTGTGCTGGGGTCCAGG | + |
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Preference number: 2 (lower is better) Translates to: PNPNWLHSQQRLQSNISPRARSR*AVLGSR Trigger: CCTGGACCCCAGCACAGCCCACCTTGACCTAGCTCT...CGGGGAGATATTACTTTGAAGTCTCTGTTGAGAATGCAACCAGTTGGGATTTGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000223911.2 |
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| 3UTR-3UTR TCA 90 bp | AGAAGTAAGAGCTTCAAGGCCGTCCTCTTCAGACATCTTGATGGTCCAGAATCCGCTGAAGATCTTGCCTaGAGATCCCTGGGGCATCTT | + |
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Preference number: 2 (lower is better) Translates to: RSKSFKAVLFRHLDGPESAEDLA*RSLGHL Trigger: AAGATGCCCCAGGGATCTTCAGGCAAGATCTTCAGC...GGATTCTGGACCATCAAGATGTCTGAAGAGGACGGCCTTGAAGCTCTTACTTCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000223911.2 |
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| 3UTR-3UTR TCA 90 bp | CTTCTTCATGTTAAAGCCCCTGTGCACATTCTCTACACAGACTCCCAAATCCCAATAAAACCTCTTGGCTaGAGATCTTGCCTGAAGATC | + |
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Preference number: 2 (lower is better) Translates to: LLHVKAPVHILYTDSQIPIKPLG*RSCLKI Trigger: GATCTTCAGGCAAGATCTTCAGCCAAGAGGTTTTAT...TGGGATTTGGGAGTCTGTGTAGAGAATGTGCACAGGGGCTTTAACATGAAGAAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000223911.2 |
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| 3UTR-3UTR CCA 90 bp | CCAAATCCCAACTGGTTGCATTCTCAACAGAGACTTCAAAGTAATATCTCCCCGTTGCCTGAAGATCCCTaGGGCATCTTTTGTAAGTCA | + |
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Preference number: 2 (lower is better) Translates to: PNPNWLHSQQRLQSNISPLPEDP*GIFCKS Trigger: TGACTTACAAAAGATGCCCCAGGGATCTTCAGGCAA...CGGGGAGATATTACTTTGAAGTCTCTGTTGAGAATGCAACCAGTTGGGATTTGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000223911.2 |
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| 3UTR-3UTR CCA 90 bp | CTTCTTCATGTTAAAGCCCCTGTGCACATTCTCTACACAGACTCCCAAATCCCAAACCATAAAACCTCTTaGCTGAAGATCTTGCCTGAA | + |
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Preference number: 2 (lower is better) Translates to: LLHVKAPVHILYTDSQIPNHKTS*LKILPE Trigger: TTCAGGCAAGATCTTCAGCCAAGAGGTTTTATGGTT...TGGGATTTGGGAGTCTGTGTAGAGAATGTGCACAGGGGCTTTAACATGAAGAAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000223911.2 |
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| 3UTR TCA 72 bp | GGTCAAGGTGGGCTGTGCTGGGGTCCAGGATCACGCTaGCTTGGTGACGTCGTAATATCGTCTTCACATCGA | + |
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Preference number: 3 (lower is better) Translates to: GQGGLCWGPGSR*LGDVVISSSHR Trigger: TCGATGTGAAGACGATATTACGACGTCACCAAGTCAGCGTGATCCTGGACCCCAGCACAGCCCACCTTGACC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000223911.2 |
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| 3UTR CCA 72 bp | CACAGCCCAGGACACAGGGTAAACCATAAAACCTCTTaGCTGAAGATCTTGCCTGAAGATCCCTGGGGCATC | + |
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Preference number: 3 (lower is better) Translates to: HSPGHRVNHKTS*LKILPEDPWGI Trigger: GATGCCCCAGGGATCTTCAGGCAAGATCTTCAGCCAAGAGGTTTTATGGTTTACCCTGTGTCCTGGGCTGTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000223911.2 |
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| 3UTR TCA 72 bp | ACATCGAAGTACAGCTCAGACACATTACATTTAGTGTaGACCTTCAGGGGATCAGCCTTCAGTGGGTTTCGC | + |
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Preference number: 3 (lower is better) Translates to: TSKYSSDTLHLV*TFRGSAFSGFR Trigger: GCGAAACCCACTGAAGGCTGATCCCCTGAAGGTTCACACTAAATGTAATGTGTCTGAGCTGTACTTCGATGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000223911.2 |
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| CDS-3UTR TCA 90 bp | GTCAGAGCTAGGTCAAGGTGGGCTGTGCTGGGGTCCAGGATCACGCTGACTTGGAGCTGTGTCCACAGTTaGTGCTCACTGGGTGAGACA | + |
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Preference number: 4 (lower is better) Translates to: VRARSRWAVLGSRITLTWSCVHS*CSLGET Trigger: TGTCTCACCCAGTGAGCATCAACTGTGGACACAGCT...CCAAGTCAGCGTGATCCTGGACCCCAGCACAGCCCACCTTGACCTAGCTCTGAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000223911.2 |
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| CDS-3UTR TCA 90 bp | TTAGTCAGAGCTAGGTCAAGGTGGGCTGTGCTGGGGTCCAGGATCACGCTGACTTCACACACCATGTCTTaGTCCTGCTCTTCCATCCCC | + |
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Preference number: 4 (lower is better) Translates to: LVRARSRWAVLGSRITLTSHTMS*SCSSIP Trigger: GGGGATGGAAGAGCAGGATCAAGACATGGTGTGTGA...AGTCAGCGTGATCCTGGACCCCAGCACAGCCCACCTTGACCTAGCTCTGACTAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000223911.2 |
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| CDS-3UTR CCA 90 bp | AGAAGTAAGAGCTTCAAGGCCGTCCTCTTCAGACATCTTGATGGTCCAGAATCCCTGGGTGAGACATCATaGCCTTGCAGATGGAGCAAG | + |
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Preference number: 4 (lower is better) Translates to: RSKSFKAVLFRHLDGPESLGETS*PCRWSK Trigger: CTTGCTCCATCTGCAAGGCCATGATGTCTCACCCAG...GGATTCTGGACCATCAAGATGTCTGAAGAGGACGGCCTTGAAGCTCTTACTTCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000223911.2 |
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| CDS-3UTR CCA 90 bp | TCCTTCTTCATGTTAAAGCCCCTGTGCACATTCTCTACACAGACTCCCAAATCCACGTCTGCTGTAGATTaGCCTCGCTGCCTTCCAGCT | + |
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Preference number: 4 (lower is better) Translates to: SFFMLKPLCTFSTQTPKSTSAVD*PRCLPA Trigger: AGCTGGAAGGCAGCGAGGCCAATCTACAGCAGACGT...GGATTTGGGAGTCTGTGTAGAGAATGTGCACAGGGGCTTTAACATGAAGAAGGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000223911.2 |
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| CDS-3UTR TCA 90 bp | CTTCTTCATGTTAAAGCCCCTGTGCACATTCTCTACACAGACTCCCAAATCCCATTGATGCTCACTGGGTaGGACATCATGGCCTTGCAG | + |
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Preference number: 4 (lower is better) Translates to: LLHVKAPVHILYTDSQIPLMLTG*DIMALQ Trigger: CTGCAAGGCCATGATGTCTCACCCAGTGAGCATCAA...TGGGATTTGGGAGTCTGTGTAGAGAATGTGCACAGGGGCTTTAACATGAAGAAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000223911.2 |
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| CDS-3UTR GCA 90 bp | CCAAATCCCAACTGGTTGCATTCTCAACAGAGACTTCAAAGTAATATCTCCCCGTCGCTGCCTTCCAGCTaGACCAGCATCTCCTTTTCC | + |
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Preference number: 4 (lower is better) Translates to: PNPNWLHSQQRLQSNISPSLPSS*TSISFS Trigger: GGAAAAGGAGATGCTGGTGCAGCTGGAAGGCAGCGA...CGGGGAGATATTACTTTGAAGTCTCTGTTGAGAATGCAACCAGTTGGGATTTGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000223911.2 |
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| CDS-3UTR GCA 90 bp | CGTCTTCACATCGAAGTACAGCTCAGACACATTACATTTAGTGTGAACCTTCAGGTAGATTGGCCTCGCTaGCTTCCAGCTGCACCAGCA | + |
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Preference number: 4 (lower is better) Translates to: RLHIEVQLRHITFSVNLQVDWPR*LPAAPA Trigger: TGCTGGTGCAGCTGGAAGGCAGCGAGGCCAATCTAC...CTGAAGGTTCACACTAAATGTAATGTGTCTGAGCTGTACTTCGATGTGAAGACG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000223911.2 |
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| CDS-3UTR CCA 90 bp | TCAAGGCCGTCCTCTTCAGACATCTTGATGGTCCAGAATCCAGACTCAGGCTCCCTTCCACCCTGTTTTTaGGCTGACATTGCAATAATA | + |
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Preference number: 4 (lower is better) Translates to: SRPSSSDILMVQNPDSGSLPPCF*ADIAII Trigger: TATTATTGCAATGTCAGCCCAAAAACAGGGTGGAAG...GGAGCCTGAGTCTGGATTCTGGACCATCAAGATGTCTGAAGAGGACGGCCTTGA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000223911.2 |
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| CDS-3UTR TCA 90 bp | AGAAGTAAGAGCTTCAAGGCCGTCCTCTTCAGACATCTTGATGGTCCAGAATCCAGATGGAGCAAGAAGTaGCCTTTCTTATCTTCACCG | + |
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Preference number: 4 (lower is better) Translates to: RSKSFKAVLFRHLDGPESRWSKK*PFLSSP Trigger: CGGTGAAGATAAGAAAGGTCACTTCTTGCTCCATCT...GGATTCTGGACCATCAAGATGTCTGAAGAGGACGGCCTTGAAGCTCTTACTTCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000223911.2 |
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| CDS-3UTR TCA 90 bp | ACATTTAGTGTGAACCTTCAGGGGATCAGCCTTCAGTGGGTTTCGCTTCATGGCGAGATTCTTGAAGTTTaGCTTGATTGTTTGCCGACG | + |
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Preference number: 4 (lower is better) Translates to: TFSVNLQGISLQWVSLHGEILEV*LDCLPT Trigger: CGTCGGCAAACAATCAAGTCAAACTTCAAGAATCTC...GCCATGAAGCGAAACCCACTGAAGGCTGATCCCCTGAAGGTTCACACTAAATGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000223911.2 |
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| CDS-3UTR CCA 90 bp | ACATTTAGTGTGAACCTTCAGGGGATCAGCCTTCAGTGGGTTTCGCTTCATGGCTCCTGTAGAAAACTCTaGAGATTCTTGAAGTTTGAC | + |
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Preference number: 4 (lower is better) Translates to: TFSVNLQGISLQWVSLHGSCRKL*RFLKFD Trigger: GTCAAACTTCAAGAATCTCCAGAGTTTTCTACAGGA...GCCATGAAGCGAAACCCACTGAAGGCTGATCCCCTGAAGGTTCACACTAAATGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000223911.2 |
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| CDS-3UTR TCA 90 bp | TCCTTCTTCATGTTAAAGCCCCTGTGCACATTCTCTACACAGACTCCCAAATCCGCTCTTCCATCCCCTTaGTCATATCAATTATGGTTT | + |
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Preference number: 4 (lower is better) Translates to: SFFMLKPLCTFSTQTPKSALPSP*SYQLWF Trigger: AAACCATAATTGATATGATCAAGGGGATGGAAGAGC...GGATTTGGGAGTCTGTGTAGAGAATGTGCACAGGGGCTTTAACATGAAGAAGGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000223911.2 |
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| CDS-3UTR CCA 90 bp | CCAAATCCCAACTGGTTGCATTCTCAACAGAGACTTCAAAGTAATATCTCCCCGCACGCAATTTTGTCATaGTGTTCTGGAGTTTTTCCT | + |
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Preference number: 4 (lower is better) Translates to: PNPNWLHSQQRLQSNISPHAILS*CSGVFP Trigger: AGGAAAAACTCCAGAACACCATGACAAAATTGCGTG...CGGGGAGATATTACTTTGAAGTCTCTGTTGAGAATGCAACCAGTTGGGATTTGG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000223911.2 |
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| CDS-3UTR CAA 90 bp | GTCAGAGCTAGGTCAAGGTGGGCTGTGCTGGGGTCCAGGATCACGCTGACTTGGGGAGTTCACGCAATTTaGTCATGGTGTTCTGGAGTT | + |
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Preference number: 5 (lower is better) Translates to: VRARSRWAVLGSRITLTWGVHAI*SWCSGV Trigger: AACTCCAGAACACCATGACAAAATTGCGTGAACTCC...CCAAGTCAGCGTGATCCTGGACCCCAGCACAGCCCACCTTGACCTAGCTCTGAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000223911.2 |
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| CDS GCA 90 bp | TCAGGGGATCAGCCTTCAGTGGGTTTCGCTTCATGGCCTCACACCTaGTCAAAGTGTTTTTCACGTCCTGTAGCAATTTCTGGGCTGAGC | + |
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Preference number: 5 (lower is better) Translates to: SGDQPSVGFASWPHT*SKCFSRPVAISGLS Trigger: GCTCAGCCCAGAAATTGCTACAGGACGTGAAAAACACTTTGAGCAGGTGTGAGGCCATGAAGCGAAACCCACTGAAGGCTGATCCCCTGA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000074067.4 ENSMUST00000226039.2 |
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| CDS GCA 90 bp | TTTGGCATTGAGCTCTCTCAAACGTCTGCTGTAGATTGGCCTCGCTaGCTTCCAGCTGCACCAGCATCTCCTTTTCCTCATTTTCCAACC | + |
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Preference number: 5 (lower is better) Translates to: FGIELSQTSAVDWPR*LPAAPASPFPHFPT Trigger: GGTTGGAAAATGAGGAAAAGGAGATGCTGGTGCAGCTGGAAGGCAGCGAGGCCAATCTACAGCAGACGTTTGAGAGAGCTCAATGCCAAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000074067.4 ENSMUST00000223911.2 ENSMUST00000226039.2 |
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| CDS-3UTR CAA 90 bp | CCTGTGCACATTCTCTACACAGACTCCCAAATCCCAACTGGTTGCATTCTCAACATGGTTTCTAGCTCCTaGTTGGGCCTGAGGTTCTCT | + |
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Preference number: 5 (lower is better) Translates to: PVHILYTDSQIPTGCILNMVSSS*LGLRFS Trigger: AGAGAACCTCAGGCCCAACAAGGAGCTAGAAACCAT...GTTGAGAATGCAACCAGTTGGGATTTGGGAGTCTGTGTAGAGAATGTGCACAGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000223911.2 |
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| CDS TCA 90 bp | AATAATAGCTCTGTATGCAGGATTTGCAGTAGCTGTGTCCACAGTTaGTGCTCACTGGGTGAGACATCATGGCCTTGCAGATGGAGCAAG | + |
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Preference number: 5 (lower is better) Translates to: NNSSVCRICSSCVHS*CSLGETSWPCRWSK Trigger: CTTGCTCCATCTGCAAGGCCATGATGTCTCACCCAGTGAGCATCAACTGTGGACACAGCTACTGCAAATCCTGCATACAGAGCTATTATT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000074067.4 ENSMUST00000223911.2 ENSMUST00000226039.2 |
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| CDS CCA 90 bp | AGACACATTACATTTAGTGTGAACCTTCAGGGGATCAGCCTTCAGTaGGTTTCGCTTCATGGCCTCACACCTGCTCAAAGTGTTTTTCAC | + |
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Preference number: 5 (lower is better) Translates to: RHITFSVNLQGISLQ*VSLHGLTPAQSVFH Trigger: GTGAAAAACACTTTGAGCAGGTGTGAGGCCATGAAGCGAAACCCACTGAAGGCTGATCCCCTGAAGGTTCACACTAAATGTAATGTGTCT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000074067.4 ENSMUST00000226039.2 |
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| CDS-3UTR CAA 90 bp | CCTGTGCACATTCTCTACACAGACTCCCAAATCCCAACTGGTTGCATTCTCAACCTCCAGTTCCTGAATTaGGCATTGAGCTCTCTCAAA | + |
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Preference number: 5 (lower is better) Translates to: PVHILYTDSQIPTGCILNLQFLN*ALSSLK Trigger: TTTGAGAGAGCTCAATGCCAAATTCAGGAACTGGAG...GTTGAGAATGCAACCAGTTGGGATTTGGGAGTCTGTGTAGAGAATGTGCACAGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000223911.2 |
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| CDS-3UTR CAA 90 bp | CTCAGACACATTACATTTAGTGTGAACCTTCAGGGGATCAGCCTTCAGTGGGTTTTCCTGAATTTGGCATaGAGCTCTCTCAAACGTCTG | + |
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Preference number: 5 (lower is better) Translates to: LRHITFSVNLQGISLQWVFLNLA*SSLKRL Trigger: CAGACGTTTGAGAGAGCTCAATGCCAAATTCAGGAA...AACCCACTGAAGGCTGATCCCCTGAAGGTTCACACTAAATGTAATGTGTCTGAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000223911.2 |
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| CDS TCA 90 bp | TACTACACAAAGGACAGCCCAACATCTTCCACCCTGTTTTTGGGCTaGCATTGCAATAATAGCTCTGTATGCAGGATTTGCAGTAGCTGT | + |
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Preference number: 5 (lower is better) Translates to: YYTKDSPTSSTLFLG*HCNNSSVCRICSSC Trigger: ACAGCTACTGCAAATCCTGCATACAGAGCTATTATTGCAATGTCAGCCCAAAAACAGGGTGGAAGATGTTGGGCTGTCCTTTGTGTAGTA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000074067.4 ENSMUST00000223911.2 ENSMUST00000226039.2 |
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| CDS-3UTR CAA 90 bp | CTCAGACACATTACATTTAGTGTGAACCTTCAGGGGATCAGCCTTCAGTGGGTTTCTTCACAAAAGCGATaGAACTTCTCTTCATGTTCC | + |
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Preference number: 5 (lower is better) Translates to: LRHITFSVNLQGISLQWVSSQKR*NFSSCS Trigger: GGAACATGAAGAGAAGTTCAATCGCTTTTGTGAAGA...AACCCACTGAAGGCTGATCCCCTGAAGGTTCACACTAAATGTAATGTGTCTGAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000223911.2 |
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| CDS-3UTR CAA 90 bp | CGTCTTCACATCGAAGTACAGCTCAGACACATTACATTTAGTGTGAACCTTCAGTTCTTGAAGTTTGACTaGATTGTTTGCCGACGATCC | + |
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Preference number: 5 (lower is better) Translates to: RLHIEVQLRHITFSVNLQFLKFD*IVCRRS Trigger: GGATCGTCGGCAAACAATCAAGTCAAACTTCAAGAA...CTGAAGGTTCACACTAAATGTAATGTGTCTGAGCTGTACTTCGATGTGAAGACG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000223911.2 |
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| CDS TCA 90 bp | CAAAAGCGATTGAACTTCTCTTCATGTTCCTCACACACCATGTCTTaGTCCTGCTCTTCCATCCCCTTGATCATATCAATTATGGTTTCT | + |
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Preference number: 5 (lower is better) Translates to: QKRLNFSSCSSHTMS*SCSSIPLIISIMVS Trigger: AGAAACCATAATTGATATGATCAAGGGGATGGAAGAGCAGGATCAAGACATGGTGTGTGAGGAACATGAAGAGAAGTTCAATCGCTTTTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000074067.4 ENSMUST00000223911.2 ENSMUST00000226039.2 |
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| CDS CCA 90 bp | GTATCTGAACTTCGTGATTCTCTTGGAGTTCACGCAATTTTGTCATaGTGTTCTGGAGTTTTTCCTTGTAGTTCTGGTACACATCTTTCA | + |
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Preference number: 5 (lower is better) Translates to: VSELRDSLGVHAILS*CSGVFPCSSGTHLS Trigger: TGAAAGATGTGTACCAGAACTACAAGGAAAAACTCCAGAACACCATGACAAAATTGCGTGAACTCCAAGAGAATCACGAAGTTCAGATAC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000074067.4 ENSMUST00000223911.2 ENSMUST00000226039.2 |
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| CDS CCA 72 bp | TTTGGCATTGAGCTCTCTCAAACGTCTGCTGTAGATTaGCCTCGCTGCCTTCCAGCTGCACCAGCATCTCCT | + |
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Preference number: 6 (lower is better) Translates to: FGIELSQTSAVD*PRCLPAAPASP Trigger: AGGAGATGCTGGTGCAGCTGGAAGGCAGCGAGGCCAATCTACAGCAGACGTTTGAGAGAGCTCAATGCCAAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000074067.4 ENSMUST00000223911.2 ENSMUST00000226039.2 |
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| CDS TCA 72 bp | TCTGTATGCAGGATTTGCAGTAGCTGTGTCCACAGTTaGTGCTCACTGGGTGAGACATCATGGCCTTGCAGA | + |
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Preference number: 6 (lower is better) Translates to: SVCRICSSCVHS*CSLGETSWPCR Trigger: TCTGCAAGGCCATGATGTCTCACCCAGTGAGCATCAACTGTGGACACAGCTACTGCAAATCCTGCATACAGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000074067.4 ENSMUST00000223911.2 ENSMUST00000226039.2 |
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| CDS CCA 72 bp | ACATTTAGTGTGAACCTTCAGGGGATCAGCCTTCAGTaGGTTTCGCTTCATGGCCTCACACCTGCTCAAAGT | + |
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Preference number: 6 (lower is better) Translates to: TFSVNLQGISLQ*VSLHGLTPAQS Trigger: ACTTTGAGCAGGTGTGAGGCCATGAAGCGAAACCCACTGAAGGCTGATCCCCTGAAGGTTCACACTAAATGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000074067.4 ENSMUST00000226039.2 |
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| CDS CAA 72 bp | GTGCCGATCTTCCCAATAACAGCGCCAGCAGAGGAGTaGACCGTCATCTTCACAAAAGCGATTGAACTTCTC | + |
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Preference number: 6 (lower is better) Translates to: VPIFPITAPAEE*TVIFTKAIELL Trigger: GAGAAGTTCAATCGCTTTTGTGAAGATGACGGTCAACTCCTCTGCTGGCGCTGTTATTGGGAAGATCGGCAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000074067.4 ENSMUST00000223911.2 ENSMUST00000226039.2 |
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| CDS GCA 72 bp | CAGCCTTCAGTGGGTTTCGCTTCATGGCCTCACACCTaGTCAAAGTGTTTTTCACGTCCTGTAGCAATTTCT | + |
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Preference number: 6 (lower is better) Translates to: QPSVGFASWPHT*SKCFSRPVAIS Trigger: AGAAATTGCTACAGGACGTGAAAAACACTTTGAGCAGGTGTGAGGCCATGAAGCGAAACCCACTGAAGGCTG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000074067.4 ENSMUST00000226039.2 |
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| CDS CAA 90 bp | ATGACCTTTGTGCCGATCTTCCCAATAACAGCGCCAGCAGAGGAGTaGACCGTCATCTTCACAAAAGCGATTGAACTTCTCTTCATGTTC | + |
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Preference number: 6 (lower is better) Translates to: MTFVPIFPITAPAEE*TVIFTKAIELLFMF Trigger: GAACATGAAGAGAAGTTCAATCGCTTTTGTGAAGATGACGGTCAACTCCTCTGCTGGCGCTGTTATTGGGAAGATCGGCACAAAGGTCAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000074067.4 ENSMUST00000223911.2 ENSMUST00000226039.2 |
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| CDS TCA 72 bp | AAGGACAGCCCAACATCTTCCACCCTGTTTTTGGGCTaGCATTGCAATAATAGCTCTGTATGCAGGATTTGC | + |
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Preference number: 6 (lower is better) Translates to: KDSPTSSTLFLG*HCNNSSVCRIC Trigger: GCAAATCCTGCATACAGAGCTATTATTGCAATGTCAGCCCAAAAACAGGGTGGAAGATGTTGGGCTGTCCTT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000074067.4 ENSMUST00000223911.2 ENSMUST00000226039.2 |
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| CDS GCA 72 bp | AAACTCTGGAGATTCTTGAAGTTTGACTTGATTGTTTaGCGACGATCCTCTACAGCATCCTTCCAGGCATTT | + |
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Preference number: 6 (lower is better) Translates to: KLWRFLKFDLIV*RRSSTASFQAF Trigger: AAATGCCTGGAAGGATGCTGTAGAGGATCGTCGGCAAACAATCAAGTCAAACTTCAAGAATCTCCAGAGTTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000074067.4 ENSMUST00000223911.2 ENSMUST00000226039.2 |
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| CDS CAA 90 bp | TCTTCCATCCCCTTGATCATATCAATTATGGTTTCTAGCTCCTTGTaGGGCCTGAGGTTCTCTAAGCTAAATGGACTACTACACAAAGGA | + |
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Preference number: 6 (lower is better) Translates to: SSIPLIISIMVSSSL*GLRFSKLNGLLHKG Trigger: TCCTTTGTGTAGTAGTCCATTTAGCTTAGAGAACCTCAGGCCCAACAAGGAGCTAGAAACCATAATTGATATGATCAAGGGGATGGAAGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000074067.4 ENSMUST00000223911.2 ENSMUST00000226039.2 |
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| CDS CAA 90 bp | TGCTCTTCCATCCCCTTGATCATATCAATTATGGTTTCTAGCTCCTaGTTGGGCCTGAGGTTCTCTAAGCTAAATGGACTACTACACAAA | + |
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Preference number: 6 (lower is better) Translates to: CSSIPLIISIMVSSS*LGLRFSKLNGLLHK Trigger: TTTGTGTAGTAGTCCATTTAGCTTAGAGAACCTCAGGCCCAACAAGGAGCTAGAAACCATAATTGATATGATCAAGGGGATGGAAGAGCA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000074067.4 ENSMUST00000223911.2 ENSMUST00000226039.2 |
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| CDS CCA 72 bp | CTTCGTGATTCTCTTGGAGTTCACGCAATTTTGTCATaGTGTTCTGGAGTTTTTCCTTGTAGTTCTGGTACA | + |
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Preference number: 6 (lower is better) Translates to: LRDSLGVHAILS*CSGVFPCSSGT Trigger: TGTACCAGAACTACAAGGAAAAACTCCAGAACACCATGACAAAATTGCGTGAACTCCAAGAGAATCACGAAG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000074067.4 ENSMUST00000223911.2 ENSMUST00000226039.2 |
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| CDS CAA 72 bp | ATCCCCTTGATCATATCAATTATGGTTTCTAGCTCCTaGTTGGGCCTGAGGTTCTCTAAGCTAAATGGACTA | + |
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Preference number: 6 (lower is better) Translates to: IPLIISIMVSSS*LGLRFSKLNGL Trigger: TAGTCCATTTAGCTTAGAGAACCTCAGGCCCAACAAGGAGCTAGAAACCATAATTGATATGATCAAGGGGAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000074067.4 ENSMUST00000223911.2 ENSMUST00000226039.2 |
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| CDS CAA 72 bp | GTGTGTTATGAAATGTATCTGAACTTCGTGATTCTCTaGGAGTTCACGCAATTTTGTCATGGTGTTCTGGAG | + |
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Preference number: 6 (lower is better) Translates to: VCYEMYLNFVIL*EFTQFCHGVLE Trigger: CTCCAGAACACCATGACAAAATTGCGTGAACTCCAAGAGAATCACGAAGTTCAGATACATTTCATAACACAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000074067.4 ENSMUST00000223911.2 ENSMUST00000226039.2 |
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| CDS TCA 72 bp | CTACAGCATCCTTCCAGGCATTTATTTGGTGTGTTATaGAATGTATCTGAACTTCGTGATTCTCTTGGAGTT | + |
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Preference number: 6 (lower is better) Translates to: LQHPSRHLFGVL*NVSELRDSLGV Trigger: AACTCCAAGAGAATCACGAAGTTCAGATACATTTCATAACACACCAAATAAATGCCTGGAAGGATGCTGTAG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000074067.4 ENSMUST00000223911.2 ENSMUST00000226039.2 |
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