RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for TRIM36 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000033949

Ensembl transcript IDs: ENSMUST00000037011.6, ENSMUST00000167364.9, ENSMUST00000237526.2

Found 217 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp CGTGGGGTGTCCAAGCTACACATCCTCTTCATATTCCAGATACTTTaGTGTGATGGCTTCCTCAAGCTGAATTCCTCCGCTGCCCATCAA +
Preference number: 1 (lower is better)
Translates to: RGVSKLHILFIFQIL*CDGFLKLNSSAAHQ
Trigger: TTGATGGGCAGCGGAGGAATTCAGCTTGAGGAAGCCATCACAGCAAAGTATCTGGAATATGAAGAGGATGTGTAGCTTGGACACCCCACG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237526.2
3UTR TCA 90 bp TCCTCTTCATATTCCAGATACTTTGCTGTGATGGCTTCCTCAAGCTaGATTCCTCCGCTGCCCATCAAGGCAAAGGCCGGATACATTGTA +
Preference number: 1 (lower is better)
Translates to: SSSYSRYFAVMASSS*IPPLPIKAKAGYIV
Trigger: TACAATGTATCCGGCCTTTGCCTTGATGGGCAGCGGAGGAATTCAGCTTGAGGAAGCCATCACAGCAAAGTATCTGGAATATGAAGAGGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000237526.2
3UTR CCA 90 bp ATCAAGGCATGGCTTTGTTCACGGTTCTTATCCTCATCAGTCACGTaGGGTGTCCAAGCTACACATCCTCTTCATATTCCAGATACTTTG +
Preference number: 1 (lower is better)
Translates to: IKAWLCSRFLSSSVT*GVQATHPLHIPDTL
Trigger: CAAAGTATCTGGAATATGAAGAGGATGTGTAGCTTGGACACCCCACGTGACTGATGAGGATAAGAACCGTGAACAAAGCCATGCCTTGAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000237526.2
3UTR GCA 90 bp GCTCATACAGGCATTTCATGTGGTCCATATCATAGAAGCTCACTTTaGCTTTATCACAGTCAAGGAAAATCCCTATACTCGTTGGCATGG +
Preference number: 1 (lower is better)
Translates to: AHTGISCGPYHRSSL*LYHSQGKSLYSLAW
Trigger: CCATGCCAACGAGTATAGGGATTTTCCTTGACTGTGATAAAGGCAAAGTGAGCTTCTATGATATGGACCACATGAAATGCCTGTATGAGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237526.2
3UTR CCA 90 bp AGAAAGCCTCCACTCCCACCATTTGTAATAGGTAGGACAATGACGTaGAAGAGACAAGGTTGTGAAGTCCTTCTGAGTTTTAAGAACCAT +
Preference number: 1 (lower is better)
Translates to: RKPPLPPFVIGRTMT*KRQGCEVLLSFKNH
Trigger: ATGGTTCTTAAAACTCAGAAGGACTTCACAACCTTGTCTCTTCCACGTCATTGTCCTACCTATTACAAATGGTGGGAGTGGAGGCTTTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037011.6
3UTR TCA 90 bp AGCAATTTCTATAGAGTGATACAGTGTTTGAACAGCTTCCTTCTCTaGCTCCTGTTAAAGCTTTATATTTTAAAACGTCTACAGGACATG +
Preference number: 1 (lower is better)
Translates to: SNFYRVIQCLNSFLL*LLLKLYILKRLQDM
Trigger: CATGTCCTGTAGACGTTTTAAAATATAAAGCTTTAACAGGAGTCAGAGAAGGAAGCTGTTCAAACACTGTATCACTCTATAGAAATTGCT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000037011.6
3UTR CAA 90 bp CCCACCTATAATCCTAGCCCTCCAGAGGCTATAACAGAACAGAGTTaGAGGCCCGCCTGGACTACACAGCAAGACCCTGTGTGTCACAGC +
Preference number: 2 (lower is better)
Translates to: PTYNPSPPEAITEQS*RPAWTTQQDPVCHS
Trigger: GCTGTGACACACAGGGTCTTGCTGTGTAGTCCAGGCGGGCCTCAAACTCTGTTCTGTTATAGCCTCTGGAGGGCTAGGATTATAGGTGGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037011.6
3UTR CAA 90 bp CAAGCTGAATTCCTCCGCTGCCCATCAAGGCAAAGGCCGGATACATaGTATGCGAACAGTCCACCTGGCGCTCATACAGGCATTTCATGT +
Preference number: 2 (lower is better)
Translates to: QAEFLRCPSRQRPDT*YANSPPGAHTGISC
Trigger: ACATGAAATGCCTGTATGAGCGCCAGGTGGACTGTTCGCATACAATGTATCCGGCCTTTGCCTTGATGGGCAGCGGAGGAATTCAGCTTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000237526.2
3UTR-3UTR GCA 90 bp GCCCATCAAGGCAAAGGCCGGATACATTGTATGCGAACAGTCCACCTGGCGCTCCAGAGTTGTCCTCTGTaGTCAGTGTCAAATTCACCA +
Preference number: 2 (lower is better)
Translates to: AHQGKGRIHCMRTVHLALQSCPL*SVSNSP
Trigger: TGGTGAATTTGACACTGAGCACAGAGGACAACTCTG...GAGCGCCAGGTGGACTGTTCGCATACAATGTATCCGGCCTTTGCCTTGATGGGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000237526.2
3UTR-3UTR CCA 90 bp CTGCCCATCAAGGCAAAGGCCGGATACATTGTATGCGAACAGTCCACCTGGCGCAATCCCTATACTCGTTaGCATGGGGAGAACTCTGTT +
Preference number: 2 (lower is better)
Translates to: LPIKAKAGYIVCEQSTWRNPYTR*HGENSV
Trigger: AACAGAGTTCTCCCCATGCCAACGAGTATAGGGATT...GCGCCAGGTGGACTGTTCGCATACAATGTATCCGGCCTTTGCCTTGATGGGCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237526.2
3UTR-3UTR GCA 90 bp GCCCATCAAGGCAAAGGCCGGATACATTGTATGCGAACAGTCCACCTGGCGCTCTCATGTCCACTGTCTTaGTCATATCTAAAGCACAGA +
Preference number: 2 (lower is better)
Translates to: AHQGKGRIHCMRTVHLALSCPLS*SYLKHR
Trigger: TCTGTGCTTTAGATATGAGCAAGACAGTGGACATGA...GAGCGCCAGGTGGACTGTTCGCATACAATGTATCCGGCCTTTGCCTTGATGGGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000237526.2
3UTR-3UTR GCA 90 bp AATACTTTGTATCCCACCCCAGCCCCCAAACAAAGGGACATGAATAACCAATTAAGCTGGGGATGGTGGTaGCCACCTATAATCCTAGCC +
Preference number: 2 (lower is better)
Translates to: NTLYPTPAPKQRDMNNQLSWGWW*PPIILA
Trigger: GGCTAGGATTATAGGTGGGCACCACCATCCCCAGCT...TAATTGGTTATTCATGTCCCTTTGTTTGGGGGCTGGGGTGGGATACAAAGTATT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000037011.6
3UTR CAA 90 bp AGAATCAAAACAGGCGTCCTCGCTTCCACTGTCATGTCCACTGTCTaGCTCATATCTAAAGCACAGACTATAAGTTGTCCTGCAGAGTTG +
Preference number: 2 (lower is better)
Translates to: RIKTGVLASTVMSTV*LISKAQTISCPAEL
Trigger: CAACTCTGCAGGACAACTTATAGTCTGTGCTTTAGATATGAGCAAGACAGTGGACATGACAGTGGAAGCGAGGACGCCTGTTTTGATTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237526.2
3UTR-3UTR CCA 90 bp ATTGTATGCGAACAGTCCACCTGGCGCTCATACAGGCATTTCATGTGGTCCATAGAGAACTCTGTTTTCTaGTTCATTAGAGGAAGTAGG +
Preference number: 2 (lower is better)
Translates to: IVCEQSTWRSYRHFMWSIENSVF*FIRGSR
Trigger: CCTACTTCCTCTAATGAACCAGAAAACAGAGTTCTC...TATGGACCACATGAAATGCCTGTATGAGCGCCAGGTGGACTGTTCGCATACAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237526.2
3UTR-3UTR CCA 90 bp GTAACATGTAACATGTCTGGTATTTCAATGCTGCTGAAAATGGGCAGTGAACTTACTAGCTGGGGATGGTaGTGCCCACCTATAATCCTA +
Preference number: 2 (lower is better)
Translates to: VTCNMSGISMLLKMGSELTSWGW*CPPIIL
Trigger: TAGGATTATAGGTGGGCACCACCATCCCCAGCTAGT...AAGTTCACTGCCCATTTTCAGCAGCATTGAAATACCAGACATGTTACATGTTAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000037011.6
3UTR CAA 90 bp AGTTGCACGGGTTCAAGAACCCTGTGTTTTTATATGAAACGATGCTaGTTACATGTGCCAGACAATGGGCATTACAACAAGGACACTGTT +
Preference number: 2 (lower is better)
Translates to: SCTGSRTLCFYMKRC*LHVPDNGHYNKDTV
Trigger: AACAGTGTCCTTGTTGTAATGCCCATTGTCTGGCACATGTAACAAGCATCGTTTCATATAAAAACACAGGGTTCTTGAACCCGTGCAACT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000037011.6
3UTR-3UTR CCA 90 bp TCAAGAACCCTGTGTTTTTATATGAAACGATGCTTGTTACATGTGCCAGACAATTACACTAGCTGGGGATaGTGGTGCCCACCTATAATC +
Preference number: 2 (lower is better)
Translates to: SRTLCFYMKRCLLHVPDNYTSWG*WCPPII
Trigger: GATTATAGGTGGGCACCACCATCCCCAGCTAGTGTA...ATTGTCTGGCACATGTAACAAGCATCGTTTCATATAAAAACACAGGGTTCTTGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000037011.6
3UTR-3UTR CCA 90 bp ATTTCATGTGGTCCATATCATAGAAGCTCACTTTGCCTTTATCACAGTCAAGGACTATACTCGTTGGCATaGGGAGAACTCTGTTTTCTG +
Preference number: 2 (lower is better)
Translates to: ISCGPYHRSSLCLYHSQGLYSLA*GELCFL
Trigger: CAGAAAACAGAGTTCTCCCCATGCCAACGAGTATAG...TCCTTGACTGTGATAAAGGCAAAGTGAGCTTCTATGATATGGACCACATGAAAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237526.2
3UTR-3UTR TCA 90 bp TGTAACATGTCTGGTATTTCAATGCTGCTGAAAATGGGCAGTGAACTTCTCAGATCATTTGCCAGGCGATaGATATTCTCAGTAGTTACA +
Preference number: 2 (lower is better)
Translates to: CNMSGISMLLKMGSELLRSFARR*IFSVVT
Trigger: TGTAACTACTGAGAATATTCATCGCCTGGCAAATGA...TCTGAGAAGTTCACTGCCCATTTTCAGCAGCATTGAAATACCAGACATGTTACA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037011.6
3UTR-3UTR TCA 90 bp CCAAAGAGAAGGACTTCCATTGTAAAGTTATCTATTCTAGACCAGTTAAGACAGGTTGTGAAGTCCTTCTaGGTTTTAAGAACCATACAC +
Preference number: 2 (lower is better)
Translates to: PKRRTSIVKLSILDQLRQVVKSF*VLRTIH
Trigger: GTGTATGGTTCTTAAAACTCAGAAGGACTTCACAAC...CTGTCTTAACTGGTCTAGAATAGATAACTTTACAATGGAAGTCCTTCTCTTTGG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037011.6
3UTR-3UTR TCA 90 bp GATACAGTGTTTGAACAGCTTCCTTCTCTGACTCCTGTTAAAGCTTTATATTTTGTATTTCAATGCTGCTaGAAATGGGCAGTGAACTTC +
Preference number: 2 (lower is better)
Translates to: DTVFEQLPSLTPVKALYFVFQCC*KWAVNF
Trigger: GAAGTTCACTGCCCATTTTCAGCAGCATTGAAATAC...AAAATATAAAGCTTTAACAGGAGTCAGAGAAGGAAGCTGTTCAAACACTGTATC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037011.6
3UTR-3UTR TCA 90 bp GATACAGTGTTTGAACAGCTTCCTTCTCTGACTCCTGTTAAAGCTTTATATTTTCCCTGTGTTTTTATATaGAACGATGCTTGTTACATG +
Preference number: 2 (lower is better)
Translates to: DTVFEQLPSLTPVKALYFPCVFI*NDACYM
Trigger: CATGTAACAAGCATCGTTTCATATAAAAACACAGGG...AAAATATAAAGCTTTAACAGGAGTCAGAGAAGGAAGCTGTTCAAACACTGTATC
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000037011.6
3UTR-3UTR CCA 90 bp TCAAGAACCCTGTGTTTTTATATGAAACGATGCTTGTTACATGTGCCAGACAATCAAATGCAAGACACATaGCTTAGTACTAGTTTCTAT +
Preference number: 2 (lower is better)
Translates to: SRTLCFYMKRCLLHVPDNQMQDT*LSTSFY
Trigger: ATAGAAACTAGTACTAAGCCATGTGTCTTGCATTTG...ATTGTCTGGCACATGTAACAAGCATCGTTTCATATAAAAACACAGGGTTCTTGA
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000037011.6
3UTR GCA 72 bp CCGCTGCCCATCAAGGCAAAGGCCGGATACATTGTATaGGAACAGTCCACCTGGCGCTCATACAGGCATTTC +
Preference number: 3 (lower is better)
Translates to: PLPIKAKAGYIV*EQSTWRSYRHF
Trigger: GAAATGCCTGTATGAGCGCCAGGTGGACTGTTCGCATACAATGTATCCGGCCTTTGCCTTGATGGGCAGCGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000237526.2
3UTR-3UTR CAA 90 bp GCCCATCAAGGCAAAGGCCGGATACATTGTATGCGAACAGTCCACCTGGCGCTCCATCAAGGCATGGCTTaGTTCACGGTTCTTATCCTC +
Preference number: 3 (lower is better)
Translates to: AHQGKGRIHCMRTVHLALHQGMA*FTVLIL
Trigger: GAGGATAAGAACCGTGAACAAAGCCATGCCTTGATG...GAGCGCCAGGTGGACTGTTCGCATACAATGTATCCGGCCTTTGCCTTGATGGGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000237526.2
3UTR TCA 72 bp TATTCCAGATACTTTGCTGTGATGGCTTCCTCAAGCTaGATTCCTCCGCTGCCCATCAAGGCAAAGGCCGGA +
Preference number: 3 (lower is better)
Translates to: YSRYFAVMASSS*IPPLPIKAKAG
Trigger: TCCGGCCTTTGCCTTGATGGGCAGCGGAGGAATTCAGCTTGAGGAAGCCATCACAGCAAAGTATCTGGAATA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000237526.2
3UTR CCA 72 bp GCAAAGGCCGGATACATTGTATGCGAACAGTCCACCTaGCGCTCATACAGGCATTTCATGTGGTCCATATCA +
Preference number: 3 (lower is better)
Translates to: AKAGYIVCEQST*RSYRHFMWSIS
Trigger: TGATATGGACCACATGAAATGCCTGTATGAGCGCCAGGTGGACTGTTCGCATACAATGTATCCGGCCTTTGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000237526.2
3UTR-3UTR CAA 90 bp GTAACTAATGTAAAGGGCTGTGAAGAATCAAAACAGGCGTCCTCGCTTCCACTGAGTTGTCCTGCAGAGTaGTCCTCTGTGCTCAGTGTC +
Preference number: 3 (lower is better)
Translates to: VTNVKGCEESKQASSLPLSCPAE*SSVLSV
Trigger: GACACTGAGCACAGAGGACAACTCTGCAGGACAACT...CAGTGGAAGCGAGGACGCCTGTTTTGATTCTTCACAGCCCTTTACATTAGTTAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237526.2
3UTR GCA 72 bp TCCAAGCTACACATCCTCTTCATATTCCAGATACTTTaGTGTGATGGCTTCCTCAAGCTGAATTCCTCCGCT +
Preference number: 3 (lower is better)
Translates to: SKLHILFIFQIL*CDGFLKLNSSA
Trigger: AGCGGAGGAATTCAGCTTGAGGAAGCCATCACAGCAAAGTATCTGGAATATGAAGAGGATGTGTAGCTTGGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000237526.2
3UTR CCA 72 bp CCACTCCCACCATTTGTAATAGGTAGGACAATGACGTaGAAGAGACAAGGTTGTGAAGTCCTTCTGAGTTTT +
Preference number: 3 (lower is better)
Translates to: PLPPFVIGRTMT*KRQGCEVLLSF
Trigger: AAAACTCAGAAGGACTTCACAACCTTGTCTCTTCCACGTCATTGTCCTACCTATTACAAATGGTGGGAGTGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037011.6
3UTR TCA 72 bp AAAGTTGCACGGGTTCAAGAACCCTGTGTTTTTATATaGAACGATGCTTGTTACATGTGCCAGACAATGGGC +
Preference number: 3 (lower is better)
Translates to: KVARVQEPCVFI*NDACYMCQTMG
Trigger: GCCCATTGTCTGGCACATGTAACAAGCATCGTTTCATATAAAAACACAGGGTTCTTGAACCCGTGCAACTTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000037011.6
3UTR-3UTR CAA 90 bp TCAAGAACCCTGTGTTTTTATATGAAACGATGCTTGTTACATGTGCCAGACAATATAACAGAACAGAGTTaGAGGCCCGCCTGGACTACA +
Preference number: 3 (lower is better)
Translates to: SRTLCFYMKRCLLHVPDNITEQS*RPAWTT
Trigger: TGTAGTCCAGGCGGGCCTCAAACTCTGTTCTGTTAT...ATTGTCTGGCACATGTAACAAGCATCGTTTCATATAAAAACACAGGGTTCTTGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000037011.6
3UTR-3UTR CAA 90 bp TCAAGAACCCTGTGTTTTTATATGAAACGATGCTTGTTACATGTGCCAGACAATCATCAAGGCATGGCTTaGTTCACGGTTCTTATCCTC +
Preference number: 3 (lower is better)
Translates to: SRTLCFYMKRCLLHVPDNHQGMA*FTVLIL
Trigger: GAGGATAAGAACCGTGAACAAAGCCATGCCTTGATG...ATTGTCTGGCACATGTAACAAGCATCGTTTCATATAAAAACACAGGGTTCTTGA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000037011.6
3UTR-3UTR CAA 90 bp GTAACATGTAACATGTCTGGTATTTCAATGCTGCTGAAAATGGGCAGTGAACTTAAAAGCAGTATTCATTaGCCAGGCGATGAATATTCT +
Preference number: 3 (lower is better)
Translates to: VTCNMSGISMLLKMGSELKSSIH*PGDEYS
Trigger: AGAATATTCATCGCCTGGCAAATGAATACTGCTTTT...AAGTTCACTGCCCATTTTCAGCAGCATTGAAATACCAGACATGTTACATGTTAC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000037011.6
3UTR CAA 72 bp TTCCTCCGCTGCCCATCAAGGCAAAGGCCGGATACATaGTATGCGAACAGTCCACCTGGCGCTCATACAGGC +
Preference number: 4 (lower is better)
Translates to: FLRCPSRQRPDT*YANSPPGAHTG
Trigger: GCCTGTATGAGCGCCAGGTGGACTGTTCGCATACAATGTATCCGGCCTTTGCCTTGATGGGCAGCGGAGGAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000237526.2
3UTR CAA 72 bp AATCCTAGCCCTCCAGAGGCTATAACAGAACAGAGTTaGAGGCCCGCCTGGACTACACAGCAAGACCCTGTG +
Preference number: 4 (lower is better)
Translates to: NPSPPEAITEQS*RPAWTTQQDPV
Trigger: CACAGGGTCTTGCTGTGTAGTCCAGGCGGGCCTCAAACTCTGTTCTGTTATAGCCTCTGGAGGGCTAGGATT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037011.6
CDS-3UTR TCA 90 bp TTCCTCAAGCTGAATTCCTCCGCTGCCCATCAAGGCAAAGGCCGGATACATTGTCACTTTCACCAGGTATaGATACGGTTCCACGCGGCA +
Preference number: 4 (lower is better)
Translates to: FLKLNSSAAHQGKGRIHCHFHQV*IRFHAA
Trigger: TGCCGCGTGGAACCGTATTCATACCTGGTGAAAGTG...ACAATGTATCCGGCCTTTGCCTTGATGGGCAGCGGAGGAATTCAGCTTGAGGAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000237526.2
CDS-3UTR TCA 90 bp ATTGTATGCGAACAGTCCACCTGGCGCTCATACAGGCATTTCATGTGGTCCATACATCGAACAGGAAACTaGAAACTGGAGCTGGAGGAG +
Preference number: 4 (lower is better)
Translates to: IVCEQSTWRSYRHFMWSIHRTGN*KLELEE
Trigger: CTCCTCCAGCTCCAGTTTTCAGTTTCCTGTTCGATG...TATGGACCACATGAAATGCCTGTATGAGCGCCAGGTGGACTGTTCGCATACAAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000237526.2
CDS-3UTR TCA 90 bp ATTGTATGCGAACAGTCCACCTGGCGCTCATACAGGCATTTCATGTGGTCCATACTCCGACATCCCCGATaGTGTAGTCTAAGCTTGTGT +
Preference number: 4 (lower is better)
Translates to: IVCEQSTWRSYRHFMWSILRHPR*CSLSLC
Trigger: ACACAAGCTTAGACTACATCATCGGGGATGTCGGAG...TATGGACCACATGAAATGCCTGTATGAGCGCCAGGTGGACTGTTCGCATACAAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237526.2
3UTR CAA 72 bp ACACTAACCCACACACGGGTGACACTAGCAGCTTTATaGCACAATGACCCAGGTAACACTGCACATTCTCTC +
Preference number: 4 (lower is better)
Translates to: TLTHTRVTLAAL*HNDPGNTAHSL
Trigger: GAGAGAATGTGCAGTGTTACCTGGGTCATTGTGCAATAAAGCTGCTAGTGTCACCCGTGTGTGGGTTAGTGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037011.6
CDS-3UTR TCA 90 bp CCTGGCGCTCATACAGGCATTTCATGTGGTCCATATCATAGAAGCTCACTTTGCTTGTCCTTTTCTGGATaGTGCCAGTCTATCAAGGCG +
Preference number: 4 (lower is better)
Translates to: PGAHTGISCGPYHRSSLCLSFSG*CQSIKA
Trigger: CGCCTTGATAGACTGGCATCATCCAGAAAAGGACAA...GCAAAGTGAGCTTCTATGATATGGACCACATGAAATGCCTGTATGAGCGCCAGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237526.2
CDS-3UTR GCA 90 bp TCAGTCACGTGGGGTGTCCAAGCTACACATCCTCTTCATATTCCAGATACTTTGGGAGCTGGAGGAGTATaGAGGATCAATTCTCTGCTG +
Preference number: 4 (lower is better)
Translates to: SVTWGVQATHPLHIPDTLGAGGV*RINSLL
Trigger: CAGCAGAGAATTGATCCTGCATACTCCTCCAGCTCC...CAAAGTATCTGGAATATGAAGAGGATGTGTAGCTTGGACACCCCACGTGACTGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237526.2
CDS-3UTR TCA 90 bp GTAACATGTAACATGTCTGGTATTTCAATGCTGCTGAAAATGGGCAGTGAACTTTGGTCTCGGGGTCAGTaGATTACGCTTCCAGCCTGG +
Preference number: 4 (lower is better)
Translates to: VTCNMSGISMLLKMGSELWSRGQ*ITLPAW
Trigger: CCAGGCTGGAAGCGTAATTCACTGACCCCGAGACCA...AAGTTCACTGCCCATTTTCAGCAGCATTGAAATACCAGACATGTTACATGTTAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000037011.6
CDS-3UTR GCA 90 bp ACAAAGAGACACGTGTTCACTATCAGTCCATCTTCCCTAGTAATTCTGAAAAATCATAATGGCTGTGGCTaGCCTAGCGGCCTGCCGGTA +
Preference number: 4 (lower is better)
Translates to: TKRHVFTISPSSLVILKNHNGCG*PSGLPV
Trigger: TACCGGCAGGCCGCTAGGGCAGCCACAGCCATTATG...ATTTTTCAGAATTACTAGGGAAGATGGACTGATAGTGAACACGTGTCTCTTTGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000037011.6
CDS-3UTR GCA 90 bp TGTAACATGTCTGGTATTTCAATGCTGCTGAAAATGGGCAGTGAACTTCTCAGAGGGCCCACATACTCATaGTGGGCTTTTACAGTGCCC +
Preference number: 4 (lower is better)
Translates to: CNMSGISMLLKMGSELLRGPTYS*WAFTVP
Trigger: GGGCACTGTAAAAGCCCAGCATGAGTATGTGGGCCC...TCTGAGAAGTTCACTGCCCATTTTCAGCAGCATTGAAATACCAGACATGTTACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000037011.6
CDS-3UTR GCA 90 bp GTCCTCGCTTCCACTGTCATGTCCACTGTCTTGCTCATATCTAAAGCACAGACTACGCATAGGGACTGTTaGTTTCAAGGTTGGAGACAA +
Preference number: 4 (lower is better)
Translates to: VLASTVMSTVLLISKAQTTHRDC*FQGWRQ
Trigger: TTGTCTCCAACCTTGAAAGCAACAGTCCCTATGCGT...AGTCTGTGCTTTAGATATGAGCAAGACAGTGGACATGACAGTGGAAGCGAGGAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000237526.2
CDS-3UTR CCA 90 bp CCTTTATCACAGTCAAGGAAAATCCCTATACTCGTTGGCATGGGGAGAACTCTGCAGGAAACTGAAAACTaGAGCTGGAGGAGTATGCAG +
Preference number: 4 (lower is better)
Translates to: PLSQSRKIPILVGMGRTLQETEN*SWRSMQ
Trigger: CTGCATACTCCTCCAGCTCCAGTTTTCAGTTTCCTG...CAGAGTTCTCCCCATGCCAACGAGTATAGGGATTTTCCTTGACTGTGATAAAGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000237526.2
3UTR CAA 72 bp ACAGGCGTCCTCGCTTCCACTGTCATGTCCACTGTCTaGCTCATATCTAAAGCACAGACTATAAGTTGTCCT +
Preference number: 4 (lower is better)
Translates to: TGVLASTVMSTV*LISKAQTISCP
Trigger: AGGACAACTTATAGTCTGTGCTTTAGATATGAGCAAGACAGTGGACATGACAGTGGAAGCGAGGACGCCTGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000237526.2
CDS-3UTR TCA 90 bp TCAGTCACGTGGGGTGTCCAAGCTACACATCCTCTTCATATTCCAGATACTTTGTACTCTGTTCCTCGTTaGTCTCAGGAATGTCTATGC +
Preference number: 4 (lower is better)
Translates to: SVTWGVQATHPLHIPDTLYSVPR*SQECLC
Trigger: GCATAGACATTCCTGAGATCAACGAGGAACAGAGTA...CAAAGTATCTGGAATATGAAGAGGATGTGTAGCTTGGACACCCCACGTGACTGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237526.2
CDS-3UTR TCA 90 bp GTAACATGTAACATGTCTGGTATTTCAATGCTGCTGAAAATGGGCAGTGAACTTATGGCTTCCTCAAGCTaGATTCCTCCGCTGCCCATC +
Preference number: 4 (lower is better)
Translates to: VTCNMSGISMLLKMGSELMASSS*IPPLPI
Trigger: GATGGGCAGCGGAGGAATTCAGCTTGAGGAAGCCAT...AAGTTCACTGCCCATTTTCAGCAGCATTGAAATACCAGACATGTTACATGTTAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037011.6
CDS-3UTR GCA 90 bp TATGTAATTAGATTAACATCAAGGCATGGCTTTGTTCACGGTTCTTATCCTCATCATAATGGCTGTGGCTaGCCTAGCGGCCTGCCGGTA +
Preference number: 4 (lower is better)
Translates to: YVIRLTSRHGFVHGSYPHHNGCG*PSGLPV
Trigger: TACCGGCAGGCCGCTAGGGCAGCCACAGCCATTATG...ATGAGGATAAGAACCGTGAACAAAGCCATGCCTTGATGTTAATCTAATTACATA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037011.6
ENSMUST00000167364.9
CDS-3UTR GCA 90 bp ACAAAGAGACACGTGTTCACTATCAGTCCATCTTCCCTAGTAATTCTGAAAAATGCTGAATTCCTCCGCTaGCCATCAAGGCAAAGGCCG +
Preference number: 4 (lower is better)
Translates to: TKRHVFTISPSSLVILKNAEFLR*PSRQRP
Trigger: CGGCCTTTGCCTTGATGGGCAGCGGAGGAATTCAGC...ATTTTTCAGAATTACTAGGGAAGATGGACTGATAGTGAACACGTGTCTCTTTGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000037011.6
CDS-3UTR CCA 90 bp TGTAACATGTCTGGTATTTCAATGCTGCTGAAAATGGGCAGTGAACTTCTCAGACCCACATACTCATGCTaGGCTTTTACAGTGCCCCAG +
Preference number: 4 (lower is better)
Translates to: CNMSGISMLLKMGSELLRPTYSC*AFTVPQ
Trigger: CTGGGGCACTGTAAAAGCCCAGCATGAGTATGTGGG...TCTGAGAAGTTCACTGCCCATTTTCAGCAGCATTGAAATACCAGACATGTTACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000037011.6
CDS-3UTR CCA 90 bp AATACTTTGTATCCCACCCCAGCCCCCAAACAAAGGGACATGAATAACCAATTAAGGCACTGCTCATGGTaGTTACCCGGTGATTGGAAT +
Preference number: 4 (lower is better)
Translates to: NTLYPTPAPKQRDMNNQLRHCSW*LPGDWN
Trigger: ATTCCAATCACCGGGTAACCACCATGAGCAGTGCCT...TAATTGGTTATTCATGTCCCTTTGTTTGGGGGCTGGGGTGGGATACAAAGTATT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000037011.6
CDS-3UTR TCA 90 bp TATGTAATTAGATTAACATCAAGGCATGGCTTTGTTCACGGTTCTTATCCTCATTGGTCTCGGGGTCAGTaGATTACGCTTCCAGCCTGG +
Preference number: 4 (lower is better)
Translates to: YVIRLTSRHGFVHGSYPHWSRGQ*ITLPAW
Trigger: CCAGGCTGGAAGCGTAATTCACTGACCCCGAGACCA...ATGAGGATAAGAACCGTGAACAAAGCCATGCCTTGATGTTAATCTAATTACATA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037011.6
ENSMUST00000167364.9
CDS-3UTR TCA 90 bp TGTAACATGTCTGGTATTTCAATGCTGCTGAAAATGGGCAGTGAACTTCTCAGACATCGAACAGGAAACTaGAAACTGGAGCTGGAGGAG +
Preference number: 4 (lower is better)
Translates to: CNMSGISMLLKMGSELLRHRTGN*KLELEE
Trigger: CTCCTCCAGCTCCAGTTTTCAGTTTCCTGTTCGATG...TCTGAGAAGTTCACTGCCCATTTTCAGCAGCATTGAAATACCAGACATGTTACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037011.6
CDS-3UTR GCA 90 bp CCAAAGAGAAGGACTTCCATTGTAAAGTTATCTATTCTAGACCAGTTAAGACAGGCCGGATACATTGTATaGGAACAGTCCACCTGGCGC +
Preference number: 4 (lower is better)
Translates to: PKRRTSIVKLSILDQLRQAGYIV*EQSTWR
Trigger: GCGCCAGGTGGACTGTTCGCATACAATGTATCCGGC...CTGTCTTAACTGGTCTAGAATAGATAACTTTACAATGGAAGTCCTTCTCTTTGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037011.6
CDS-3UTR GCA 90 bp TATGTAATTAGATTAACATCAAGGCATGGCTTTGTTCACGGTTCTTATCCTCATGCTGAATTCCTCCGCTaGCCATCAAGGCAAAGGCCG +
Preference number: 4 (lower is better)
Translates to: YVIRLTSRHGFVHGSYPHAEFLR*PSRQRP
Trigger: CGGCCTTTGCCTTGATGGGCAGCGGAGGAATTCAGC...ATGAGGATAAGAACCGTGAACAAAGCCATGCCTTGATGTTAATCTAATTACATA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037011.6
ENSMUST00000167364.9
CDS-3UTR CCA 90 bp TCAGTCACGTGGGGTGTCCAAGCTACACATCCTCTTCATATTCCAGATACTTTGGGCTTTGTCCTTTTCTaGATGATGCCAGTCTATCAA +
Preference number: 4 (lower is better)
Translates to: SVTWGVQATHPLHIPDTLGFVLF*MMPVYQ
Trigger: TTGATAGACTGGCATCATCCAGAAAAGGACAAAGCC...CAAAGTATCTGGAATATGAAGAGGATGTGTAGCTTGGACACCCCACGTGACTGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000237526.2
CDS-3UTR CCA 90 bp AATACTTTGTATCCCACCCCAGCCCCCAAACAAAGGGACATGAATAACCAATTACTTGCAGTTTGTCGCTaGAAGCAACTCCCACTTTCA +
Preference number: 4 (lower is better)
Translates to: NTLYPTPAPKQRDMNNQLLAVCR*KQLPLS
Trigger: TGAAAGTGGGAGTTGCTTCCAGCGACAAACTGCAAG...TAATTGGTTATTCATGTCCCTTTGTTTGGGGGCTGGGGTGGGATACAAAGTATT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000037011.6
CDS-3UTR CCA 90 bp TTTATCACAGTCAAGGAAAATCCCTATACTCGTTGGCATGGGGAGAACTCTGTTCTTGCAGTTTGTCGCTaGAAGCAACTCCCACTTTCA +
Preference number: 4 (lower is better)
Translates to: FITVKENPYTRWHGENSVLAVCR*KQLPLS
Trigger: TGAAAGTGGGAGTTGCTTCCAGCGACAAACTGCAAG...AACAGAGTTCTCCCCATGCCAACGAGTATAGGGATTTTCCTTGACTGTGATAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000237526.2
CDS-3UTR TCA 90 bp GTAACTAATGTAAAGGGCTGTGAAGAATCAAAACAGGCGTCCTCGCTTCCACTGACTTTACTTGTGCCGTaGACTTCTATCTCATTCCAT +
Preference number: 4 (lower is better)
Translates to: VTNVKGCEESKQASSLPLTLLVP*TSISFH
Trigger: ATGGAATGAGATAGAAGTTCACGGCACAAGTAAAGT...CAGTGGAAGCGAGGACGCCTGTTTTGATTCTTCACAGCCCTTTACATTAGTTAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237526.2
CDS-3UTR TCA 90 bp TCAAGAACCCTGTGTTTTTATATGAAACGATGCTTGTTACATGTGCCAGACAATCACTTTCACCAGGTATaGATACGGTTCCACGCGGCA +
Preference number: 4 (lower is better)
Translates to: SRTLCFYMKRCLLHVPDNHFHQV*IRFHAA
Trigger: TGCCGCGTGGAACCGTATTCATACCTGGTGAAAGTG...ATTGTCTGGCACATGTAACAAGCATCGTTTCATATAAAAACACAGGGTTCTTGA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000037011.6
CDS-3UTR TCA 90 bp TATGTAATTAGATTAACATCAAGGCATGGCTTTGTTCACGGTTCTTATCCTCATATGGCTTCCTCAAGCTaGATTCCTCCGCTGCCCATC +
Preference number: 4 (lower is better)
Translates to: YVIRLTSRHGFVHGSYPHMASSS*IPPLPI
Trigger: GATGGGCAGCGGAGGAATTCAGCTTGAGGAAGCCAT...ATGAGGATAAGAACCGTGAACAAAGCCATGCCTTGATGTTAATCTAATTACATA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037011.6
ENSMUST00000167364.9
CDS-3UTR GCA 90 bp TATGTAATTAGATTAACATCAAGGCATGGCTTTGTTCACGGTTCTTATCCTCATGGGCCCACATACTCATaGTGGGCTTTTACAGTGCCC +
Preference number: 4 (lower is better)
Translates to: YVIRLTSRHGFVHGSYPHGPTYS*WAFTVP
Trigger: GGGCACTGTAAAAGCCCAGCATGAGTATGTGGGCCC...ATGAGGATAAGAACCGTGAACAAAGCCATGCCTTGATGTTAATCTAATTACATA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037011.6
ENSMUST00000167364.9
CDS-3UTR GCA 90 bp TATGTAATTAGATTAACATCAAGGCATGGCTTTGTTCACGGTTCTTATCCTCATGCCGGATACATTGTATaGGAACAGTCCACCTGGCGC +
Preference number: 4 (lower is better)
Translates to: YVIRLTSRHGFVHGSYPHAGYIV*EQSTWR
Trigger: GCGCCAGGTGGACTGTTCGCATACAATGTATCCGGC...ATGAGGATAAGAACCGTGAACAAAGCCATGCCTTGATGTTAATCTAATTACATA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037011.6
ENSMUST00000167364.9
CDS-3UTR CCA 90 bp GATACAGTGTTTGAACAGCTTCCTTCTCTGACTCCTGTTAAAGCTTTATATTTTGGAAGGATCAGCGGGTaGGTAAACAGCTCCTTGCAC +
Preference number: 4 (lower is better)
Translates to: DTVFEQLPSLTPVKALYFGRISG*VNSSLH
Trigger: GTGCAAGGAGCTGTTTACCCACCCGCTGATCCTTCC...AAAATATAAAGCTTTAACAGGAGTCAGAGAAGGAAGCTGTTCAAACACTGTATC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037011.6
CDS-3UTR CCA 90 bp TATGTAATTAGATTAACATCAAGGCATGGCTTTGTTCACGGTTCTTATCCTCATGGAAGGATCAGCGGGTaGGTAAACAGCTCCTTGCAC +
Preference number: 4 (lower is better)
Translates to: YVIRLTSRHGFVHGSYPHGRISG*VNSSLH
Trigger: GTGCAAGGAGCTGTTTACCCACCCGCTGATCCTTCC...ATGAGGATAAGAACCGTGAACAAAGCCATGCCTTGATGTTAATCTAATTACATA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037011.6
ENSMUST00000167364.9
CDS-3UTR CCA 90 bp CCAAAGAGAAGGACTTCCATTGTAAAGTTATCTATTCTAGACCAGTTAAGACAGTGTAGGCACTGCTCATaGTGGTTACCCGGTGATTGG +
Preference number: 4 (lower is better)
Translates to: PKRRTSIVKLSILDQLRQCRHCS*WLPGDW
Trigger: CCAATCACCGGGTAACCACCATGAGCAGTGCCTACA...CTGTCTTAACTGGTCTAGAATAGATAACTTTACAATGGAAGTCCTTCTCTTTGG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037011.6
CDS-3UTR CCA 90 bp GTAACATGTAACATGTCTGGTATTTCAATGCTGCTGAAAATGGGCAGTGAACTTTTCTGTATTCTGAGATaGAGCTGCTTCGCCGTCTGC +
Preference number: 4 (lower is better)
Translates to: VTCNMSGISMLLKMGSELFCILR*SCFAVC
Trigger: GCAGACGGCGAAGCAGCTCCATCTCAGAATACAGAA...AAGTTCACTGCCCATTTTCAGCAGCATTGAAATACCAGACATGTTACATGTTAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000037011.6
CDS-3UTR CCA 90 bp TGTAACATGTCTGGTATTTCAATGCTGCTGAAAATGGGCAGTGAACTTCTCAGACAGGAAACTGAAAACTaGAGCTGGAGGAGTATGCAG +
Preference number: 4 (lower is better)
Translates to: CNMSGISMLLKMGSELLRQETEN*SWRSMQ
Trigger: CTGCATACTCCTCCAGCTCCAGTTTTCAGTTTCCTG...TCTGAGAAGTTCACTGCCCATTTTCAGCAGCATTGAAATACCAGACATGTTACA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000037011.6
CDS-3UTR CCA 90 bp ACAAAGAGACACGTGTTCACTATCAGTCCATCTTCCCTAGTAATTCTGAAAAATTGCGAACAGTCCACCTaGCGCTCATACAGGCATTTC +
Preference number: 4 (lower is better)
Translates to: TKRHVFTISPSSLVILKNCEQST*RSYRHF
Trigger: GAAATGCCTGTATGAGCGCCAGGTGGACTGTTCGCA...ATTTTTCAGAATTACTAGGGAAGATGGACTGATAGTGAACACGTGTCTCTTTGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000037011.6
CDS-3UTR TCA 90 bp ACAAAGAGACACGTGTTCACTATCAGTCCATCTTCCCTAGTAATTCTGAAAAATCTCCGACATCCCCGATaGTGTAGTCTAAGCTTGTGT +
Preference number: 4 (lower is better)
Translates to: TKRHVFTISPSSLVILKNLRHPR*CSLSLC
Trigger: ACACAAGCTTAGACTACATCATCGGGGATGTCGGAG...ATTTTTCAGAATTACTAGGGAAGATGGACTGATAGTGAACACGTGTCTCTTTGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000037011.6
CDS-3UTR TCA 90 bp TATGTAATTAGATTAACATCAAGGCATGGCTTTGTTCACGGTTCTTATCCTCATCACTTTCACCAGGTATaGATACGGTTCCACGCGGCA +
Preference number: 4 (lower is better)
Translates to: YVIRLTSRHGFVHGSYPHHFHQV*IRFHAA
Trigger: TGCCGCGTGGAACCGTATTCATACCTGGTGAAAGTG...ATGAGGATAAGAACCGTGAACAAAGCCATGCCTTGATGTTAATCTAATTACATA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037011.6
ENSMUST00000167364.9
ENSMUST00000237526.2
CDS-3UTR GCA 90 bp TGTAACATGTCTGGTATTTCAATGCTGCTGAAAATGGGCAGTGAACTTCTCAGAGCTGGGCTTTTACAGTaGCCCAGGGATGATAAATTT +
Preference number: 4 (lower is better)
Translates to: CNMSGISMLLKMGSELLRAGLLQ*PRDDKF
Trigger: AAATTTATCATCCCTGGGGCACTGTAAAAGCCCAGC...TCTGAGAAGTTCACTGCCCATTTTCAGCAGCATTGAAATACCAGACATGTTACA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000037011.6
CDS-3UTR GCA 90 bp ACAAAGAGACACGTGTTCACTATCAGTCCATCTTCCCTAGTAATTCTGAAAAATAGGTTTTGTAGGCACTaGTCATGGTGGTTACCCGGT +
Preference number: 4 (lower is better)
Translates to: TKRHVFTISPSSLVILKNRFCRH*SWWLPG
Trigger: ACCGGGTAACCACCATGAGCAGTGCCTACAAAACCT...ATTTTTCAGAATTACTAGGGAAGATGGACTGATAGTGAACACGTGTCTCTTTGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000037011.6
CDS-3UTR GCA 90 bp AATACTTTGTATCCCACCCCAGCCCCCAAACAAAGGGACATGAATAACCAATTATCTCAGGAATGTCTATaGCACTGGAGAAAAAGGACA +
Preference number: 4 (lower is better)
Translates to: NTLYPTPAPKQRDMNNQLSQECL*HWRKRT
Trigger: TGTCCTTTTTCTCCAGTGGCATAGACATTCCTGAGA...TAATTGGTTATTCATGTCCCTTTGTTTGGGGGCTGGGGTGGGATACAAAGTATT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000037011.6
CDS-3UTR GCA 90 bp TTTATCACAGTCAAGGAAAATCCCTATACTCGTTGGCATGGGGAGAACTCTGTTTCTCAGGAATGTCTATaGCACTGGAGAAAAAGGACA +
Preference number: 4 (lower is better)
Translates to: FITVKENPYTRWHGENSVSQECL*HWRKRT
Trigger: TGTCCTTTTTCTCCAGTGGCATAGACATTCCTGAGA...AACAGAGTTCTCCCCATGCCAACGAGTATAGGGATTTTCCTTGACTGTGATAAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000237526.2
CDS-3UTR CCA 90 bp ACAAAGAGACACGTGTTCACTATCAGTCCATCTTCCCTAGTAATTCTGAAAAATCAGCTCCTTGCACGCTaGGCAAATAAGCTCCTTTTC +
Preference number: 4 (lower is better)
Translates to: TKRHVFTISPSSLVILKNQLLAR*ANKLLF
Trigger: GAAAAGGAGCTTATTTGCCCAGCGTGCAAGGAGCTG...ATTTTTCAGAATTACTAGGGAAGATGGACTGATAGTGAACACGTGTCTCTTTGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000037011.6
CDS-3UTR CCA 90 bp TGTAACATGTCTGGTATTTCAATGCTGCTGAAAATGGGCAGTGAACTTCTCAGATGTAGATTCCTGGGGTaGAGGTTTACAAAGGTCACA +
Preference number: 4 (lower is better)
Translates to: CNMSGISMLLKMGSELLRCRFLG*RFTKVT
Trigger: TGTGACCTTTGTAAACCTCCACCCCAGGAATCTACA...TCTGAGAAGTTCACTGCCCATTTTCAGCAGCATTGAAATACCAGACATGTTACA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000037011.6
CDS-3UTR CCA 90 bp TATGTAATTAGATTAACATCAAGGCATGGCTTTGTTCACGGTTCTTATCCTCATCCCACATACTCATGCTaGGCTTTTACAGTGCCCCAG +
Preference number: 4 (lower is better)
Translates to: YVIRLTSRHGFVHGSYPHPTYSC*AFTVPQ
Trigger: CTGGGGCACTGTAAAAGCCCAGCATGAGTATGTGGG...ATGAGGATAAGAACCGTGAACAAAGCCATGCCTTGATGTTAATCTAATTACATA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000037011.6
ENSMUST00000167364.9
CDS-3UTR CCA 90 bp TATGTAATTAGATTAACATCAAGGCATGGCTTTGTTCACGGTTCTTATCCTCATTGTAGGCACTGCTCATaGTGGTTACCCGGTGATTGG +
Preference number: 4 (lower is better)
Translates to: YVIRLTSRHGFVHGSYPHCRHCS*WLPGDW
Trigger: CCAATCACCGGGTAACCACCATGAGCAGTGCCTACA...ATGAGGATAAGAACCGTGAACAAAGCCATGCCTTGATGTTAATCTAATTACATA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037011.6
ENSMUST00000167364.9
CDS-3UTR CCA 90 bp ACTGTCATGTCCACTGTCTTGCTCATATCTAAAGCACAGACTATAAGTTGTCCTACTGAAAACTGGAGCTaGAGGAGTATGCAGGATCAA +
Preference number: 4 (lower is better)
Translates to: TVMSTVLLISKAQTISCPTENWS*RSMQDQ
Trigger: TTGATCCTGCATACTCCTCCAGCTCCAGTTTTCAGT...AGGACAACTTATAGTCTGTGCTTTAGATATGAGCAAGACAGTGGACATGACAGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237526.2
CDS-3UTR CCA 90 bp TATGTAATTAGATTAACATCAAGGCATGGCTTTGTTCACGGTTCTTATCCTCATTGCGAACAGTCCACCTaGCGCTCATACAGGCATTTC +
Preference number: 4 (lower is better)
Translates to: YVIRLTSRHGFVHGSYPHCEQST*RSYRHF
Trigger: GAAATGCCTGTATGAGCGCCAGGTGGACTGTTCGCA...ATGAGGATAAGAACCGTGAACAAAGCCATGCCTTGATGTTAATCTAATTACATA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037011.6
ENSMUST00000167364.9
3UTR CAA 72 bp ATATCTAAAGCACAGACTATAAGTTGTCCTGCAGAGTaGTCCTCTGTGCTCAGTGTCAAATTCACCACAGTA +
Preference number: 4 (lower is better)
Translates to: ISKAQTISCPAE*SSVLSVKFTTV
Trigger: TACTGTGGTGAATTTGACACTGAGCACAGAGGACAACTCTGCAGGACAACTTATAGTCTGTGCTTTAGATAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000237526.2
CDS-3UTR TCA 90 bp TATGTAATTAGATTAACATCAAGGCATGGCTTTGTTCACGGTTCTTATCCTCATTTCGAAACAGACCACTaGCTCCTCGCTCTCCAAGAT +
Preference number: 4 (lower is better)
Translates to: YVIRLTSRHGFVHGSYPHFETDH*LLALQD
Trigger: ATCTTGGAGAGCGAGGAGTCAGTGGTCTGTTTCGAA...ATGAGGATAAGAACCGTGAACAAAGCCATGCCTTGATGTTAATCTAATTACATA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037011.6
ENSMUST00000167364.9
CDS-3UTR TCA 90 bp GTAACATGTAACATGTCTGGTATTTCAATGCTGCTGAAAATGGGCAGTGAACTTTACTCTGTTCCTCGTTaGTCTCAGGAATGTCTATGC +
Preference number: 4 (lower is better)
Translates to: VTCNMSGISMLLKMGSELYSVPR*SQECLC
Trigger: GCATAGACATTCCTGAGATCAACGAGGAACAGAGTA...AAGTTCACTGCCCATTTTCAGCAGCATTGAAATACCAGACATGTTACATGTTAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037011.6
CDS-3UTR TCA 90 bp ACAAAGAGACACGTGTTCACTATCAGTCCATCTTCCCTAGTAATTCTGAAAAATTTGTCCTTTTCTGGATaGTGCCAGTCTATCAAGGCG +
Preference number: 4 (lower is better)
Translates to: TKRHVFTISPSSLVILKNLSFSG*CQSIKA
Trigger: CGCCTTGATAGACTGGCATCATCCAGAAAAGGACAA...ATTTTTCAGAATTACTAGGGAAGATGGACTGATAGTGAACACGTGTCTCTTTGT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000037011.6
CDS-3UTR TCA 90 bp TATGTAATTAGATTAACATCAAGGCATGGCTTTGTTCACGGTTCTTATCCTCATCATCGAACAGGAAACTaGAAACTGGAGCTGGAGGAG +
Preference number: 4 (lower is better)
Translates to: YVIRLTSRHGFVHGSYPHHRTGN*KLELEE
Trigger: CTCCTCCAGCTCCAGTTTTCAGTTTCCTGTTCGATG...ATGAGGATAAGAACCGTGAACAAAGCCATGCCTTGATGTTAATCTAATTACATA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037011.6
ENSMUST00000167364.9
ENSMUST00000237526.2
CDS-3UTR TCA 90 bp TATGTAATTAGATTAACATCAAGGCATGGCTTTGTTCACGGTTCTTATCCTCATCTCCGACATCCCCGATaGTGTAGTCTAAGCTTGTGT +
Preference number: 4 (lower is better)
Translates to: YVIRLTSRHGFVHGSYPHLRHPR*CSLSLC
Trigger: ACACAAGCTTAGACTACATCATCGGGGATGTCGGAG...ATGAGGATAAGAACCGTGAACAAAGCCATGCCTTGATGTTAATCTAATTACATA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000037011.6
ENSMUST00000167364.9
ENSMUST00000237526.2
CDS-3UTR TCA 90 bp TATGTAATTAGATTAACATCAAGGCATGGCTTTGTTCACGGTTCTTATCCTCATTTCTTAATAGTCACCTaGGAGTCTGAGGCATCCCCC +
Preference number: 4 (lower is better)
Translates to: YVIRLTSRHGFVHGSYPHFLIVT*ESEASP
Trigger: GGGGGATGCCTCAGACTCTCAGGTGACTATTAAGAA...ATGAGGATAAGAACCGTGAACAAAGCCATGCCTTGATGTTAATCTAATTACATA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000167364.9
CDS-3UTR GCA 90 bp TATGTAATTAGATTAACATCAAGGCATGGCTTTGTTCACGGTTCTTATCCTCATAGGTTTTGTAGGCACTaGTCATGGTGGTTACCCGGT +
Preference number: 4 (lower is better)
Translates to: YVIRLTSRHGFVHGSYPHRFCRH*SWWLPG
Trigger: ACCGGGTAACCACCATGAGCAGTGCCTACAAAACCT...ATGAGGATAAGAACCGTGAACAAAGCCATGCCTTGATGTTAATCTAATTACATA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037011.6
ENSMUST00000167364.9
CDS-3UTR GCA 90 bp GATACAGTGTTTGAACAGCTTCCTTCTCTGACTCCTGTTAAAGCTTTATATTTTATTCTGAGATGGAGCTaGTTCGCCGTCTGCACAAAG +
Preference number: 4 (lower is better)
Translates to: DTVFEQLPSLTPVKALYFILRWS*FAVCTK
Trigger: CTTTGTGCAGACGGCGAAGCAGCTCCATCTCAGAAT...AAAATATAAAGCTTTAACAGGAGTCAGAGAAGGAAGCTGTTCAAACACTGTATC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037011.6
CDS-3UTR GCA 90 bp TATGTAATTAGATTAACATCAAGGCATGGCTTTGTTCACGGTTCTTATCCTCATATTCTGAGATGGAGCTaGTTCGCCGTCTGCACAAAG +
Preference number: 4 (lower is better)
Translates to: YVIRLTSRHGFVHGSYPHILRWS*FAVCTK
Trigger: CTTTGTGCAGACGGCGAAGCAGCTCCATCTCAGAAT...ATGAGGATAAGAACCGTGAACAAAGCCATGCCTTGATGTTAATCTAATTACATA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037011.6
ENSMUST00000167364.9
CDS-3UTR GCA 90 bp TATGTAATTAGATTAACATCAAGGCATGGCTTTGTTCACGGTTCTTATCCTCATGGAGCTGGAGGAGTATaGAGGATCAATTCTCTGCTG +
Preference number: 4 (lower is better)
Translates to: YVIRLTSRHGFVHGSYPHGAGGV*RINSLL
Trigger: CAGCAGAGAATTGATCCTGCATACTCCTCCAGCTCC...ATGAGGATAAGAACCGTGAACAAAGCCATGCCTTGATGTTAATCTAATTACATA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037011.6
ENSMUST00000167364.9
ENSMUST00000237526.2
CDS-3UTR CCA 90 bp TATGTAATTAGATTAACATCAAGGCATGGCTTTGTTCACGGTTCTTATCCTCATCAGCTCCTTGCACGCTaGGCAAATAAGCTCCTTTTC +
Preference number: 4 (lower is better)
Translates to: YVIRLTSRHGFVHGSYPHQLLAR*ANKLLF
Trigger: GAAAAGGAGCTTATTTGCCCAGCGTGCAAGGAGCTG...ATGAGGATAAGAACCGTGAACAAAGCCATGCCTTGATGTTAATCTAATTACATA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037011.6
ENSMUST00000167364.9
CDS-3UTR CCA 90 bp GATACAGTGTTTGAACAGCTTCCTTCTCTGACTCCTGTTAAAGCTTTATATTTTCCCAACTTACAGAGGTaGCAAACTGGCCTTCTGCAT +
Preference number: 4 (lower is better)
Translates to: DTVFEQLPSLTPVKALYFPNLQR*QTGLLH
Trigger: ATGCAGAAGGCCAGTTTGCCACCTCTGTAAGTTGGG...AAAATATAAAGCTTTAACAGGAGTCAGAGAAGGAAGCTGTTCAAACACTGTATC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037011.6
CDS-3UTR CCA 90 bp TATGTAATTAGATTAACATCAAGGCATGGCTTTGTTCACGGTTCTTATCCTCATCCCAACTTACAGAGGTaGCAAACTGGCCTTCTGCAT +
Preference number: 4 (lower is better)
Translates to: YVIRLTSRHGFVHGSYPHPNLQR*QTGLLH
Trigger: ATGCAGAAGGCCAGTTTGCCACCTCTGTAAGTTGGG...ATGAGGATAAGAACCGTGAACAAAGCCATGCCTTGATGTTAATCTAATTACATA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037011.6
ENSMUST00000167364.9
CDS-3UTR CCA 90 bp TCAAGAACCCTGTGTTTTTATATGAAACGATGCTTGTTACATGTGCCAGACAATTGGTTACCCGGTGATTaGAATGATTCCCACCCAACT +
Preference number: 4 (lower is better)
Translates to: SRTLCFYMKRCLLHVPDNWLPGD*NDSHPT
Trigger: AGTTGGGTGGGAATCATTCCAATCACCGGGTAACCA...ATTGTCTGGCACATGTAACAAGCATCGTTTCATATAAAAACACAGGGTTCTTGA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000037011.6
CDS-3UTR CCA 90 bp TATGTAATTAGATTAACATCAAGGCATGGCTTTGTTCACGGTTCTTATCCTCATAGGCACTGCTCATGGTaGTTACCCGGTGATTGGAAT +
Preference number: 4 (lower is better)
Translates to: YVIRLTSRHGFVHGSYPHRHCSW*LPGDWN
Trigger: ATTCCAATCACCGGGTAACCACCATGAGCAGTGCCT...ATGAGGATAAGAACCGTGAACAAAGCCATGCCTTGATGTTAATCTAATTACATA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037011.6
ENSMUST00000167364.9
CDS-3UTR CCA 90 bp TATGTAATTAGATTAACATCAAGGCATGGCTTTGTTCACGGTTCTTATCCTCATTTCTGTATTCTGAGATaGAGCTGCTTCGCCGTCTGC +
Preference number: 4 (lower is better)
Translates to: YVIRLTSRHGFVHGSYPHFCILR*SCFAVC
Trigger: GCAGACGGCGAAGCAGCTCCATCTCAGAATACAGAA...ATGAGGATAAGAACCGTGAACAAAGCCATGCCTTGATGTTAATCTAATTACATA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037011.6
ENSMUST00000167364.9
CDS-3UTR CCA 90 bp ACTGTCATGTCCACTGTCTTGCTCATATCTAAAGCACAGACTATAAGTTGTCCTGAATGTCTATGCCACTaGAGAAAAAGGACAACTCTC +
Preference number: 4 (lower is better)
Translates to: TVMSTVLLISKAQTISCPECLCH*RKRTTL
Trigger: GAGAGTTGTCCTTTTTCTCCAGTGGCATAGACATTC...AGGACAACTTATAGTCTGTGCTTTAGATATGAGCAAGACAGTGGACATGACAGT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000237526.2
CDS-3UTR CCA 90 bp TGTAACATGTCTGGTATTTCAATGCTGCTGAAAATGGGCAGTGAACTTCTCAGAGGCTTTGTCCTTTTCTaGATGATGCCAGTCTATCAA +
Preference number: 4 (lower is better)
Translates to: CNMSGISMLLKMGSELLRGFVLF*MMPVYQ
Trigger: TTGATAGACTGGCATCATCCAGAAAAGGACAAAGCC...TCTGAGAAGTTCACTGCCCATTTTCAGCAGCATTGAAATACCAGACATGTTACA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000037011.6
CDS-3UTR CCA 90 bp TTTATCACAGTCAAGGAAAATCCCTATACTCGTTGGCATGGGGAGAACTCTGTTTGTTGCTTTCAAGGTTaGAGACAACTTTACTTGTGC +
Preference number: 4 (lower is better)
Translates to: FITVKENPYTRWHGENSVCCFQG*RQLYLC
Trigger: GCACAAGTAAAGTTGTCTCCAACCTTGAAAGCAACA...AACAGAGTTCTCCCCATGCCAACGAGTATAGGGATTTTCCTTGACTGTGATAAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000237526.2
CDS-3UTR TCA 90 bp TATGTAATTAGATTAACATCAAGGCATGGCTTTGTTCACGGTTCTTATCCTCATTTGTCCTTTTCTGGATaGTGCCAGTCTATCAAGGCG +
Preference number: 4 (lower is better)
Translates to: YVIRLTSRHGFVHGSYPHLSFSG*CQSIKA
Trigger: CGCCTTGATAGACTGGCATCATCCAGAAAAGGACAA...ATGAGGATAAGAACCGTGAACAAAGCCATGCCTTGATGTTAATCTAATTACATA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000037011.6
ENSMUST00000167364.9
ENSMUST00000237526.2
CDS-3UTR TCA 90 bp GATACAGTGTTTGAACAGCTTCCTTCTCTGACTCCTGTTAAAGCTTTATATTTTCCAGATACTTTGCTGTaGTGGCTTCCTCAAGCTGAA +
Preference number: 4 (lower is better)
Translates to: DTVFEQLPSLTPVKALYFPDTLL*WLPQAE
Trigger: TTCAGCTTGAGGAAGCCATCACAGCAAAGTATCTGG...AAAATATAAAGCTTTAACAGGAGTCAGAGAAGGAAGCTGTTCAAACACTGTATC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037011.6
CDS-3UTR TCA 90 bp TATGTAATTAGATTAACATCAAGGCATGGCTTTGTTCACGGTTCTTATCCTCATCCAGATACTTTGCTGTaGTGGCTTCCTCAAGCTGAA +
Preference number: 4 (lower is better)
Translates to: YVIRLTSRHGFVHGSYPHPDTLL*WLPQAE
Trigger: TTCAGCTTGAGGAAGCCATCACAGCAAAGTATCTGG...ATGAGGATAAGAACCGTGAACAAAGCCATGCCTTGATGTTAATCTAATTACATA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037011.6
ENSMUST00000167364.9
CDS-3UTR GCA 90 bp GTAACATGTAACATGTCTGGTATTTCAATGCTGCTGAAAATGGGCAGTGAACTTTTCATTGCAGTAGCTTaGACTACAATCCATGCAGCT +
Preference number: 4 (lower is better)
Translates to: VTCNMSGISMLLKMGSELFIAVA*TTIHAA
Trigger: AGCTGCATGGATTGTAGTGCAAGCTACTGCAATGAA...AAGTTCACTGCCCATTTTCAGCAGCATTGAAATACCAGACATGTTACATGTTAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000037011.6
CDS-3UTR GCA 90 bp CCAAAGAGAAGGACTTCCATTGTAAAGTTATCTATTCTAGACCAGTTAAGACAGGGCAAACTGGCCTTCTaGATAGTTCACAGTACATGT +
Preference number: 4 (lower is better)
Translates to: PKRRTSIVKLSILDQLRQGKLAF*IVHSTC
Trigger: ACATGTACTGTGAACTATGCAGAAGGCCAGTTTGCC...CTGTCTTAACTGGTCTAGAATAGATAACTTTACAATGGAAGTCCTTCTCTTTGG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037011.6
CDS-3UTR CCA 90 bp TATGTAATTAGATTAACATCAAGGCATGGCTTTGTTCACGGTTCTTATCCTCATTGGTTACCCGGTGATTaGAATGATTCCCACCCAACT +
Preference number: 4 (lower is better)
Translates to: YVIRLTSRHGFVHGSYPHWLPGD*NDSHPT
Trigger: AGTTGGGTGGGAATCATTCCAATCACCGGGTAACCA...ATGAGGATAAGAACCGTGAACAAAGCCATGCCTTGATGTTAATCTAATTACATA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037011.6
ENSMUST00000167364.9
CDS-3UTR CCA 90 bp GATACAGTGTTTGAACAGCTTCCTTCTCTGACTCCTGTTAAAGCTTTATATTTTTCTTCAAAAGAAGCCTaGGCTGCAGGTCTAAAGCTC +
Preference number: 4 (lower is better)
Translates to: DTVFEQLPSLTPVKALYFSSKEA*AAGLKL
Trigger: GAGCTTTAGACCTGCAGCCCAGGCTTCTTTTGAAGA...AAAATATAAAGCTTTAACAGGAGTCAGAGAAGGAAGCTGTTCAAACACTGTATC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000037011.6
CDS-3UTR CCA 90 bp TATGTAATTAGATTAACATCAAGGCATGGCTTTGTTCACGGTTCTTATCCTCATTCTTCAAAAGAAGCCTaGGCTGCAGGTCTAAAGCTC +
Preference number: 4 (lower is better)
Translates to: YVIRLTSRHGFVHGSYPHSSKEA*AAGLKL
Trigger: GAGCTTTAGACCTGCAGCCCAGGCTTCTTTTGAAGA...ATGAGGATAAGAACCGTGAACAAAGCCATGCCTTGATGTTAATCTAATTACATA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037011.6
ENSMUST00000167364.9
CDS-3UTR CCA 90 bp GTAACATGTAACATGTCTGGTATTTCAATGCTGCTGAAAATGGGCAGTGAACTTGAATGTCTATGCCACTaGAGAAAAAGGACAACTCTC +
Preference number: 4 (lower is better)
Translates to: VTCNMSGISMLLKMGSELECLCH*RKRTTL
Trigger: GAGAGTTGTCCTTTTTCTCCAGTGGCATAGACATTC...AAGTTCACTGCCCATTTTCAGCAGCATTGAAATACCAGACATGTTACATGTTAC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000037011.6
CDS-3UTR CCA 90 bp CCAAAGAGAAGGACTTCCATTGTAAAGTTATCTATTCTAGACCAGTTAAGACAGACTGAAAACTGGAGCTaGAGGAGTATGCAGGATCAA +
Preference number: 4 (lower is better)
Translates to: PKRRTSIVKLSILDQLRQTENWS*RSMQDQ
Trigger: TTGATCCTGCATACTCCTCCAGCTCCAGTTTTCAGT...CTGTCTTAACTGGTCTAGAATAGATAACTTTACAATGGAAGTCCTTCTCTTTGG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037011.6
CDS-3UTR CCA 90 bp TATGTAATTAGATTAACATCAAGGCATGGCTTTGTTCACGGTTCTTATCCTCATCAGGAAACTGAAAACTaGAGCTGGAGGAGTATGCAG +
Preference number: 4 (lower is better)
Translates to: YVIRLTSRHGFVHGSYPHQETEN*SWRSMQ
Trigger: CTGCATACTCCTCCAGCTCCAGTTTTCAGTTTCCTG...ATGAGGATAAGAACCGTGAACAAAGCCATGCCTTGATGTTAATCTAATTACATA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000037011.6
ENSMUST00000167364.9
ENSMUST00000237526.2
CDS-3UTR CCA 90 bp TATGTAATTAGATTAACATCAAGGCATGGCTTTGTTCACGGTTCTTATCCTCATCTTGCAGTTTGTCGCTaGAAGCAACTCCCACTTTCA +
Preference number: 4 (lower is better)
Translates to: YVIRLTSRHGFVHGSYPHLAVCR*KQLPLS
Trigger: TGAAAGTGGGAGTTGCTTCCAGCGACAAACTGCAAG...ATGAGGATAAGAACCGTGAACAAAGCCATGCCTTGATGTTAATCTAATTACATA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037011.6
ENSMUST00000167364.9
ENSMUST00000237526.2
CDS-3UTR CCA 90 bp ACAAAGAGACACGTGTTCACTATCAGTCCATCTTCCCTAGTAATTCTGAAAAATCTATACTCGTTGGCATaGGGAGAACTCTGTTTTCTG +
Preference number: 4 (lower is better)
Translates to: TKRHVFTISPSSLVILKNLYSLA*GELCFL
Trigger: CAGAAAACAGAGTTCTCCCCATGCCAACGAGTATAG...ATTTTTCAGAATTACTAGGGAAGATGGACTGATAGTGAACACGTGTCTCTTTGT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000037011.6
3UTR CAA 72 bp GGTTCAAGAACCCTGTGTTTTTATATGAAACGATGCTaGTTACATGTGCCAGACAATGGGCATTACAACAAG +
Preference number: 4 (lower is better)
Translates to: GSRTLCFYMKRC*LHVPDNGHYNK
Trigger: CTTGTTGTAATGCCCATTGTCTGGCACATGTAACAAGCATCGTTTCATATAAAAACACAGGGTTCTTGAACC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000037011.6
CDS-3UTR TCA 90 bp TATGTAATTAGATTAACATCAAGGCATGGCTTTGTTCACGGTTCTTATCCTCATTACTCTGTTCCTCGTTaGTCTCAGGAATGTCTATGC +
Preference number: 4 (lower is better)
Translates to: YVIRLTSRHGFVHGSYPHYSVPR*SQECLC
Trigger: GCATAGACATTCCTGAGATCAACGAGGAACAGAGTA...ATGAGGATAAGAACCGTGAACAAAGCCATGCCTTGATGTTAATCTAATTACATA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037011.6
ENSMUST00000167364.9
ENSMUST00000237526.2
CDS-3UTR GCA 90 bp TATGTAATTAGATTAACATCAAGGCATGGCTTTGTTCACGGTTCTTATCCTCATGGCAAACTGGCCTTCTaGATAGTTCACAGTACATGT +
Preference number: 4 (lower is better)
Translates to: YVIRLTSRHGFVHGSYPHGKLAF*IVHSTC
Trigger: ACATGTACTGTGAACTATGCAGAAGGCCAGTTTGCC...ATGAGGATAAGAACCGTGAACAAAGCCATGCCTTGATGTTAATCTAATTACATA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037011.6
ENSMUST00000167364.9
CDS-3UTR GCA 90 bp GATACAGTGTTTGAACAGCTTCCTTCTCTGACTCCTGTTAAAGCTTTATATTTTACGCATAGGGACTGTTaGTTTCAAGGTTGGAGACAA +
Preference number: 4 (lower is better)
Translates to: DTVFEQLPSLTPVKALYFTHRDC*FQGWRQ
Trigger: TTGTCTCCAACCTTGAAAGCAACAGTCCCTATGCGT...AAAATATAAAGCTTTAACAGGAGTCAGAGAAGGAAGCTGTTCAAACACTGTATC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037011.6
CDS-3UTR GCA 90 bp TATGTAATTAGATTAACATCAAGGCATGGCTTTGTTCACGGTTCTTATCCTCATACGCATAGGGACTGTTaGTTTCAAGGTTGGAGACAA +
Preference number: 4 (lower is better)
Translates to: YVIRLTSRHGFVHGSYPHTHRDC*FQGWRQ
Trigger: TTGTCTCCAACCTTGAAAGCAACAGTCCCTATGCGT...ATGAGGATAAGAACCGTGAACAAAGCCATGCCTTGATGTTAATCTAATTACATA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037011.6
ENSMUST00000167364.9
ENSMUST00000237526.2
CDS-3UTR CCA 90 bp TATGTAATTAGATTAACATCAAGGCATGGCTTTGTTCACGGTTCTTATCCTCATCTCTTTGTAGATTCCTaGGGTGGAGGTTTACAAAGG +
Preference number: 4 (lower is better)
Translates to: YVIRLTSRHGFVHGSYPHLFVDS*GGGLQR
Trigger: CCTTTGTAAACCTCCACCCCAGGAATCTACAAAGAG...ATGAGGATAAGAACCGTGAACAAAGCCATGCCTTGATGTTAATCTAATTACATA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037011.6
ENSMUST00000167364.9
CDS-3UTR CCA 90 bp TATGTAATTAGATTAACATCAAGGCATGGCTTTGTTCACGGTTCTTATCCTCATACTGAAAACTGGAGCTaGAGGAGTATGCAGGATCAA +
Preference number: 4 (lower is better)
Translates to: YVIRLTSRHGFVHGSYPHTENWS*RSMQDQ
Trigger: TTGATCCTGCATACTCCTCCAGCTCCAGTTTTCAGT...ATGAGGATAAGAACCGTGAACAAAGCCATGCCTTGATGTTAATCTAATTACATA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000037011.6
ENSMUST00000167364.9
ENSMUST00000237526.2
CDS-3UTR CCA 90 bp TATGTAATTAGATTAACATCAAGGCATGGCTTTGTTCACGGTTCTTATCCTCATCTATACTCGTTGGCATaGGGAGAACTCTGTTTTCTG +
Preference number: 4 (lower is better)
Translates to: YVIRLTSRHGFVHGSYPHLYSLA*GELCFL
Trigger: CAGAAAACAGAGTTCTCCCCATGCCAACGAGTATAG...ATGAGGATAAGAACCGTGAACAAAGCCATGCCTTGATGTTAATCTAATTACATA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037011.6
ENSMUST00000167364.9
CDS-3UTR CCA 90 bp TATGTAATTAGATTAACATCAAGGCATGGCTTTGTTCACGGTTCTTATCCTCATAATCCCTATACTCGTTaGCATGGGGAGAACTCTGTT +
Preference number: 4 (lower is better)
Translates to: YVIRLTSRHGFVHGSYPHNPYTR*HGENSV
Trigger: AACAGAGTTCTCCCCATGCCAACGAGTATAGGGATT...ATGAGGATAAGAACCGTGAACAAAGCCATGCCTTGATGTTAATCTAATTACATA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037011.6
ENSMUST00000167364.9
CDS-3UTR TCA 90 bp ACAAAGAGACACGTGTTCACTATCAGTCCATCTTCCCTAGTAATTCTGAAAAATCAATCGTTTCCAAAGTaGAATTTCGAAACAGACCAC +
Preference number: 4 (lower is better)
Translates to: TKRHVFTISPSSLVILKNQSFPK*NFETDH
Trigger: GTGGTCTGTTTCGAAATTTCACTTTGGAAACGATTG...ATTTTTCAGAATTACTAGGGAAGATGGACTGATAGTGAACACGTGTCTCTTTGT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000037011.6
CDS-3UTR TCA 90 bp TCAAGAACCCTGTGTTTTTATATGAAACGATGCTTGTTACATGTGCCAGACAATACTTTACTTGTGCCGTaGACTTCTATCTCATTCCAT +
Preference number: 4 (lower is better)
Translates to: SRTLCFYMKRCLLHVPDNTLLVP*TSISFH
Trigger: ATGGAATGAGATAGAAGTTCACGGCACAAGTAAAGT...ATTGTCTGGCACATGTAACAAGCATCGTTTCATATAAAAACACAGGGTTCTTGA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000037011.6
CDS-3UTR GCA 90 bp TATGTAATTAGATTAACATCAAGGCATGGCTTTGTTCACGGTTCTTATCCTCATTTCATTGCAGTAGCTTaGACTACAATCCATGCAGCT +
Preference number: 4 (lower is better)
Translates to: YVIRLTSRHGFVHGSYPHFIAVA*TTIHAA
Trigger: AGCTGCATGGATTGTAGTGCAAGCTACTGCAATGAA...ATGAGGATAAGAACCGTGAACAAAGCCATGCCTTGATGTTAATCTAATTACATA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037011.6
ENSMUST00000167364.9
CDS-3UTR GCA 90 bp TATGTAATTAGATTAACATCAAGGCATGGCTTTGTTCACGGTTCTTATCCTCATTCTCAGGAATGTCTATaGCACTGGAGAAAAAGGACA +
Preference number: 4 (lower is better)
Translates to: YVIRLTSRHGFVHGSYPHSQECL*HWRKRT
Trigger: TGTCCTTTTTCTCCAGTGGCATAGACATTCCTGAGA...ATGAGGATAAGAACCGTGAACAAAGCCATGCCTTGATGTTAATCTAATTACATA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000037011.6
ENSMUST00000167364.9
ENSMUST00000237526.2
CDS-3UTR GCA 90 bp TCAAGAACCCTGTGTTTTTATATGAAACGATGCTTGTTACATGTGCCAGACAATATATTCCAGATACTTTaGTGTGATGGCTTCCTCAAG +
Preference number: 4 (lower is better)
Translates to: SRTLCFYMKRCLLHVPDNIFQIL*CDGFLK
Trigger: CTTGAGGAAGCCATCACAGCAAAGTATCTGGAATAT...ATTGTCTGGCACATGTAACAAGCATCGTTTCATATAAAAACACAGGGTTCTTGA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000037011.6
CDS-3UTR CCA 90 bp TATGTAATTAGATTAACATCAAGGCATGGCTTTGTTCACGGTTCTTATCCTCATGAATGTCTATGCCACTaGAGAAAAAGGACAACTCTC +
Preference number: 4 (lower is better)
Translates to: YVIRLTSRHGFVHGSYPHECLCH*RKRTTL
Trigger: GAGAGTTGTCCTTTTTCTCCAGTGGCATAGACATTC...ATGAGGATAAGAACCGTGAACAAAGCCATGCCTTGATGTTAATCTAATTACATA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000037011.6
ENSMUST00000167364.9
ENSMUST00000237526.2
CDS-3UTR CCA 90 bp TATGTAATTAGATTAACATCAAGGCATGGCTTTGTTCACGGTTCTTATCCTCATGGCTTTGTCCTTTTCTaGATGATGCCAGTCTATCAA +
Preference number: 4 (lower is better)
Translates to: YVIRLTSRHGFVHGSYPHGFVLF*MMPVYQ
Trigger: TTGATAGACTGGCATCATCCAGAAAAGGACAAAGCC...ATGAGGATAAGAACCGTGAACAAAGCCATGCCTTGATGTTAATCTAATTACATA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000037011.6
ENSMUST00000167364.9
ENSMUST00000237526.2
CDS-3UTR CCA 90 bp CCAAAGAGAAGGACTTCCATTGTAAAGTTATCTATTCTAGACCAGTTAAGACAGTGTTGCTTTCAAGGTTaGAGACAACTTTACTTGTGC +
Preference number: 4 (lower is better)
Translates to: PKRRTSIVKLSILDQLRQCCFQG*RQLYLC
Trigger: GCACAAGTAAAGTTGTCTCCAACCTTGAAAGCAACA...CTGTCTTAACTGGTCTAGAATAGATAACTTTACAATGGAAGTCCTTCTCTTTGG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037011.6
CDS-3UTR CCA 90 bp CCAAAGAGAAGGACTTCCATTGTAAAGTTATCTATTCTAGACCAGTTAAGACAGGAGAACTCTGTTTTCTaGTTCATTAGAGGAAGTAGG +
Preference number: 4 (lower is better)
Translates to: PKRRTSIVKLSILDQLRQENSVF*FIRGSR
Trigger: CCTACTTCCTCTAATGAACCAGAAAACAGAGTTCTC...CTGTCTTAACTGGTCTAGAATAGATAACTTTACAATGGAAGTCCTTCTCTTTGG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037011.6
CDS-3UTR TCA 90 bp TATGTAATTAGATTAACATCAAGGCATGGCTTTGTTCACGGTTCTTATCCTCATCAATCGTTTCCAAAGTaGAATTTCGAAACAGACCAC +
Preference number: 4 (lower is better)
Translates to: YVIRLTSRHGFVHGSYPHQSFPK*NFETDH
Trigger: GTGGTCTGTTTCGAAATTTCACTTTGGAAACGATTG...ATGAGGATAAGAACCGTGAACAAAGCCATGCCTTGATGTTAATCTAATTACATA
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037011.6
ENSMUST00000167364.9
CDS-3UTR TCA 90 bp TCAAGAACCCTGTGTTTTTATATGAAACGATGCTTGTTACATGTGCCAGACAATAGGGATGATAAATTTTaGAGCATTCATTGCAGTAGC +
Preference number: 4 (lower is better)
Translates to: SRTLCFYMKRCLLHVPDNRDDKF*SIHCSS
Trigger: GCTACTGCAATGAATGCTTCAAAATTTATCATCCCT...ATTGTCTGGCACATGTAACAAGCATCGTTTCATATAAAAACACAGGGTTCTTGA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000037011.6
CDS-3UTR TCA 90 bp TATGTAATTAGATTAACATCAAGGCATGGCTTTGTTCACGGTTCTTATCCTCATACTTTACTTGTGCCGTaGACTTCTATCTCATTCCAT +
Preference number: 4 (lower is better)
Translates to: YVIRLTSRHGFVHGSYPHTLLVP*TSISFH
Trigger: ATGGAATGAGATAGAAGTTCACGGCACAAGTAAAGT...ATGAGGATAAGAACCGTGAACAAAGCCATGCCTTGATGTTAATCTAATTACATA
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037011.6
ENSMUST00000167364.9
ENSMUST00000237526.2
CDS-3UTR GCA 90 bp TATGTAATTAGATTAACATCAAGGCATGGCTTTGTTCACGGTTCTTATCCTCATATATTCCAGATACTTTaGTGTGATGGCTTCCTCAAG +
Preference number: 4 (lower is better)
Translates to: YVIRLTSRHGFVHGSYPHIFQIL*CDGFLK
Trigger: CTTGAGGAAGCCATCACAGCAAAGTATCTGGAATAT...ATGAGGATAAGAACCGTGAACAAAGCCATGCCTTGATGTTAATCTAATTACATA
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037011.6
ENSMUST00000167364.9
CDS-3UTR CCA 90 bp TATGTAATTAGATTAACATCAAGGCATGGCTTTGTTCACGGTTCTTATCCTCATTGTTGCTTTCAAGGTTaGAGACAACTTTACTTGTGC +
Preference number: 4 (lower is better)
Translates to: YVIRLTSRHGFVHGSYPHCCFQG*RQLYLC
Trigger: GCACAAGTAAAGTTGTCTCCAACCTTGAAAGCAACA...ATGAGGATAAGAACCGTGAACAAAGCCATGCCTTGATGTTAATCTAATTACATA
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037011.6
ENSMUST00000167364.9
ENSMUST00000237526.2
CDS-3UTR CCA 90 bp TATGTAATTAGATTAACATCAAGGCATGGCTTTGTTCACGGTTCTTATCCTCATGAGAACTCTGTTTTCTaGTTCATTAGAGGAAGTAGG +
Preference number: 4 (lower is better)
Translates to: YVIRLTSRHGFVHGSYPHENSVF*FIRGSR
Trigger: CCTACTTCCTCTAATGAACCAGAAAACAGAGTTCTC...ATGAGGATAAGAACCGTGAACAAAGCCATGCCTTGATGTTAATCTAATTACATA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037011.6
ENSMUST00000167364.9
CDS-3UTR TCA 90 bp TATGTAATTAGATTAACATCAAGGCATGGCTTTGTTCACGGTTCTTATCCTCATAGGGATGATAAATTTTaGAGCATTCATTGCAGTAGC +
Preference number: 4 (lower is better)
Translates to: YVIRLTSRHGFVHGSYPHRDDKF*SIHCSS
Trigger: GCTACTGCAATGAATGCTTCAAAATTTATCATCCCT...ATGAGGATAAGAACCGTGAACAAAGCCATGCCTTGATGTTAATCTAATTACATA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037011.6
ENSMUST00000167364.9
CDS CCA 90 bp GGCGTCCTCGCTTCCACTGTCATGTCCACTGTCTTGCTCATATCTTaGACTAGCTGCATCTCGGGGAGAGCGCAGCCACTCTTGCAGTTT +
Preference number: 5 (lower is better)
Translates to: GVLASTVMSTVLLIS*TSCISGRAQPLLQF
Trigger: AAACTGCAAGAGTGGCTGCGCTCTCCCCGAGATGCAGCTAGTCCAAGATATGAGCAAGACAGTGGACATGACAGTGGAAGCGAGGACGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037011.6
ENSMUST00000167364.9
CDS GCA 90 bp GCTTCCACTGTCATGTCCACTGTCTTGCTCATATCTTGGACTAGCTaGATCTCGGGGAGAGCGCAGCCACTCTTGCAGTTTGTCGCTGGA +
Preference number: 5 (lower is better)
Translates to: ASTVMSTVLLISWTS*ISGRAQPLLQFVAG
Trigger: TCCAGCGACAAACTGCAAGAGTGGCTGCGCTCTCCCCGAGATGCAGCTAGTCCAAGATATGAGCAAGACAGTGGACATGACAGTGGAAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037011.6
ENSMUST00000167364.9
CDS GCA 90 bp GAATCAAAACAGGCGTCCTCGCTTCCACTGTCATGTCCACTGTCTTaGTCATATCTTGGACTAGCTGCATCTCGGGGAGAGCGCAGCCAC +
Preference number: 5 (lower is better)
Translates to: ESKQASSLPLSCPLS*SYLGLAASRGERSH
Trigger: GTGGCTGCGCTCTCCCCGAGATGCAGCTAGTCCAAGATATGAGCAAGACAGTGGACATGACAGTGGAAGCGAGGACGCCTGTTTTGATTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000037011.6
ENSMUST00000167364.9
CDS GCA 90 bp TTCCTGGGGTGGAGGTTTACAAAGGTCACACATAATGGCTGTGGCTaGCCTAGCGGCCTGCCGGTATCTCTCGACAATCGTTTCCAAAGT +
Preference number: 5 (lower is better)
Translates to: FLGWRFTKVTHNGCG*PSGLPVSLDNRFQS
Trigger: ACTTTGGAAACGATTGTCGAGAGATACCGGCAGGCCGCTAGGGCAGCCACAGCCATTATGTGTGACCTTTGTAAACCTCCACCCCAGGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037011.6
ENSMUST00000167364.9
CDS TCA 90 bp CTCTTGCAGTTTGTCGCTGGAAGCAACTCCCACTTTCACCAGGTATaGATACGGTTCCACGCGGCAGGCCCAGAAGTGTTTACCTTTCGT +
Preference number: 5 (lower is better)
Translates to: LLQFVAGSNSHFHQV*IRFHAAGPEVFTFR
Trigger: ACGAAAGGTAAACACTTCTGGGCCTGCCGCGTGGAACCGTATTCATACCTGGTGAAAGTGGGAGTTGCTTCCAGCGACAAACTGCAAGAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037011.6
ENSMUST00000167364.9
ENSMUST00000237526.2
CDS GCA 90 bp TCATATCTTGGACTAGCTGCATCTCGGGGAGAGCGCAGCCACTCTTaGAGTTTGTCGCTGGAAGCAACTCCCACTTTCACCAGGTATGAA +
Preference number: 5 (lower is better)
Translates to: SYLGLAASRGERSHS*SLSLEATPTFTRYE
Trigger: TTCATACCTGGTGAAAGTGGGAGTTGCTTCCAGCGACAAACTGCAAGAGTGGCTGCGCTCTCCCCGAGATGCAGCTAGTCCAAGATATGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037011.6
ENSMUST00000167364.9
CDS CCA 90 bp CTGGCAGGGAAGGATCAGCGGGTGGGTAAACAGCTCCTTGCACGCTaGGCAAATAAGCTCCTTTTCGATATTCTTAATAGTCACCTTGCC +
Preference number: 5 (lower is better)
Translates to: LAGKDQRVGKQLLAR*ANKLLFDILNSHLA
Trigger: GGCAAGGTGACTATTAAGAATATCGAAAAGGAGCTTATTTGCCCAGCGTGCAAGGAGCTGTTTACCCACCCGCTGATCCTTCCCTGCCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037011.6
CDS GCA 90 bp CACTTCTCATCGAACAGGAAACTGAAAACTGGAGCTGGAGGAGTATaGAGGATCAATTCTCTGCTGCAGGGACTGCAGATAGAACCCCTG +
Preference number: 5 (lower is better)
Translates to: HFSSNRKLKTGAGGV*RINSLLQGLQIEPL
Trigger: CAGGGGTTCTATCTGCAGTCCCTGCAGCAGAGAATTGATCCTGCATACTCCTCCAGCTCCAGTTTTCAGTTTCCTGTTCGATGAGAAGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000037011.6
ENSMUST00000167364.9
ENSMUST00000237526.2
CDS CCA 90 bp GTAGCTTGCACTACAATCCATGCAGCTCTTTGTAGATTCCTGGGGTaGAGGTTTACAAAGGTCACACATAATGGCTGTGGCTGCCCTAGC +
Preference number: 5 (lower is better)
Translates to: VACTTIHAALCRFLG*RFTKVTHNGCGCPS
Trigger: GCTAGGGCAGCCACAGCCATTATGTGTGACCTTTGTAAACCTCCACCCCAGGAATCTACAAAGAGCTGCATGGATTGTAGTGCAAGCTAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037011.6
ENSMUST00000167364.9
CDS CCA 90 bp CCTTTAAGGTTTTGTAGGCACTGCTCATGGTGGTTACCCGGTGATTaGAATGATTCCCACCCAACTTACAGAGGTGGCAAACTGGCCTTC +
Preference number: 5 (lower is better)
Translates to: PLRFCRHCSWWLPGD*NDSHPTYRGGKLAF
Trigger: GAAGGCCAGTTTGCCACCTCTGTAAGTTGGGTGGGAATCATTCCAATCACCGGGTAACCACCATGAGCAGTGCCTACAAAACCTTAAAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037011.6
ENSMUST00000167364.9
CDS CCA 90 bp CTGGCAGGGAAGGATCAGCGGGTGGGTAAACAGCTCCTTGCACGCTaGGCAAATAAGCTCCTTTTCGATATTCTTAATAGTCACCTGAGA +
Preference number: 5 (lower is better)
Translates to: LAGKDQRVGKQLLAR*ANKLLFDILNSHLR
Trigger: TCTCAGGTGACTATTAAGAATATCGAAAAGGAGCTTATTTGCCCAGCGTGCAAGGAGCTGTTTACCCACCCGCTGATCCTTCCCTGCCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000167364.9
CDS-3UTR CAA 90 bp TCAGTCACGTGGGGTGTCCAAGCTACACATCCTCTTCATATTCCAGATACTTTGAGCCACTCTTGCAGTTaGTCGCTGGAAGCAACTCCC +
Preference number: 5 (lower is better)
Translates to: SVTWGVQATHPLHIPDTLSHSCS*SLEATP
Trigger: GGGAGTTGCTTCCAGCGACAAACTGCAAGAGTGGCT...CAAAGTATCTGGAATATGAAGAGGATGTGTAGCTTGGACACCCCACGTGACTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237526.2
CDS TCA 90 bp ATGTTCACAGCCAGGACAAGGGAACGTGGTTGGTCTCGGGGTCAGTaGATTACGCTTCCAGCCTGGTCTGTTAATCTTGTCGATTTTATC +
Preference number: 5 (lower is better)
Translates to: MFTARTRERGWSRGQ*ITLPAWSVNLVDFI
Trigger: GATAAAATCGACAAGATTAACAGACCAGGCTGGAAGCGTAATTCACTGACCCCGAGACCAACCACGTTCCCTTGTCCTGGCTGTGAACAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000037011.6
ENSMUST00000167364.9
CDS TCA 90 bp AGAGGTGCTCAGTGTTGTAGCCACACTTCTCATCGAACAGGAAACTaGAAACTGGAGCTGGAGGAGTATGCAGGATCAATTCTCTGCTGC +
Preference number: 5 (lower is better)
Translates to: RGAQCCSHTSHRTGN*KLELEEYAGSILCC
Trigger: GCAGCAGAGAATTGATCCTGCATACTCCTCCAGCTCCAGTTTTCAGTTTCCTGTTCGATGAGAAGTGTGGCTACAACACTGAGCACCTCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037011.6
ENSMUST00000167364.9
ENSMUST00000237526.2
CDS GCA 90 bp GGTTTACAAAGGTCACACATAATGGCTGTGGCTGCCCTAGCGGCCTaGCGGTATCTCTCGACAATCGTTTCCAAAGTGAAATTTCGAAAC +
Preference number: 5 (lower is better)
Translates to: GLQRSHIMAVAALAA*RYLSTIVSKVKFRN
Trigger: GTTTCGAAATTTCACTTTGGAAACGATTGTCGAGAGATACCGGCAGGCCGCTAGGGCAGCCACAGCCATTATGTGTGACCTTTGTAAACC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037011.6
ENSMUST00000167364.9
CDS CCA 90 bp GTTGTAGCCACACTTCTCATCGAACAGGAAACTGAAAACTGGAGCTaGAGGAGTATGCAGGATCAATTCTCTGCTGCAGGGACTGCAGAT +
Preference number: 5 (lower is better)
Translates to: VVATLLIEQETENWS*RSMQDQFSAAGTAD
Trigger: ATCTGCAGTCCCTGCAGCAGAGAATTGATCCTGCATACTCCTCCAGCTCCAGTTTTCAGTTTCCTGTTCGATGAGAAGTGTGGCTACAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000037011.6
ENSMUST00000167364.9
ENSMUST00000237526.2
CDS TCA 90 bp TTGAACGAGTCATCAAGAGACAGTAAAAGTTCTTTCACACACTTATaGCAGACGCTGTGCTGGCAGGGAAGGATCAGCGGGTGGGTAAAC +
Preference number: 5 (lower is better)
Translates to: LNESSRDSKSSFTHL*QTLCWQGRISGWVN
Trigger: GTTTACCCACCCGCTGATCCTTCCCTGCCAGCACAGCGTCTGTCATAAGTGTGTGAAAGAACTTTTACTGTCTCTTGATGACTCGTTCAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037011.6
ENSMUST00000167364.9
CDS CCA 90 bp TGTAAGCTCTCACTCGGAACGCATAGGGACTGTTGCTTTCAAGGTTaGAGACAACTTTACTTGTGCCGTGAACTTCTATCTCATTCCATG +
Preference number: 5 (lower is better)
Translates to: CKLSLGTHRDCCFQG*RQLYLCRELLSHSM
Trigger: CATGGAATGAGATAGAAGTTCACGGCACAAGTAAAGTTGTCTCCAACCTTGAAAGCAACAGTCCCTATGCGTTCCGAGTGAGAGCTTACA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037011.6
ENSMUST00000167364.9
ENSMUST00000237526.2
CDS-3UTR CAA 90 bp TGTAACATGTCTGGTATTTCAATGCTGCTGAAAATGGGCAGTGAACTTCTCAGATGGGTAAACAGCTCCTaGCACGCTGGGCAAATAAGC +
Preference number: 5 (lower is better)
Translates to: CNMSGISMLLKMGSELLRWVNSS*HAGQIS
Trigger: GCTTATTTGCCCAGCGTGCAAGGAGCTGTTTACCCA...TCTGAGAAGTTCACTGCCCATTTTCAGCAGCATTGAAATACCAGACATGTTACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037011.6
CDS GCA 90 bp TGGAATGATTCCCACCCAACTTACAGAGGTGGCAAACTGGCCTTCTaGATAGTTCACAGTACATGTTTATTCTCTCTGTCTCATGTTCTG +
Preference number: 5 (lower is better)
Translates to: WNDSHPTYRGGKLAF*IVHSTCLFSLSHVL
Trigger: CAGAACATGAGACAGAGAGAATAAACATGTACTGTGAACTATGCAGAAGGCCAGTTTGCCACCTCTGTAAGTTGGGTGGGAATCATTCCA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037011.6
ENSMUST00000167364.9
CDS CCA 90 bp CTTTTGAAAGTTTCTCCTTTAAGGTTTTGTAGGCACTGCTCATGGTaGTTACCCGGTGATTGGAATGATTCCCACCCAACTTACAGAGGT +
Preference number: 5 (lower is better)
Translates to: LLKVSPLRFCRHCSW*LPGDWNDSHPTYRG
Trigger: ACCTCTGTAAGTTGGGTGGGAATCATTCCAATCACCGGGTAACCACCATGAGCAGTGCCTACAAAACCTTAAAGGAGAAACTTTCAAAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000037011.6
ENSMUST00000167364.9
CDS-3UTR CAA 90 bp CCTTTATCACAGTCAAGGAAAATCCCTATACTCGTTGGCATGGGGAGAACTCTGTTACTCTGTTCCTCGTaGATCTCAGGAATGTCTATG +
Preference number: 5 (lower is better)
Translates to: PLSQSRKIPILVGMGRTLLLCSS*ISGMSM
Trigger: CATAGACATTCCTGAGATCAACGAGGAACAGAGTAA...CAGAGTTCTCCCCATGCCAACGAGTATAGGGATTTTCCTTGACTGTGATAAAGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000237526.2
CDS-3UTR CAA 90 bp ACAAAGAGACACGTGTTCACTATCAGTCCATCTTCCCTAGTAATTCTGAAAAATAGCCACTCTTGCAGTTaGTCGCTGGAAGCAACTCCC +
Preference number: 5 (lower is better)
Translates to: TKRHVFTISPSSLVILKNSHSCS*SLEATP
Trigger: GGGAGTTGCTTCCAGCGACAAACTGCAAGAGTGGCT...ATTTTTCAGAATTACTAGGGAAGATGGACTGATAGTGAACACGTGTCTCTTTGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000037011.6
CDS-3UTR CAA 90 bp AATACTTTGTATCCCACCCCAGCCCCCAAACAAAGGGACATGAATAACCAATTAGTCATGTCCACTGTCTaGCTCATATCTTGGACTAGC +
Preference number: 5 (lower is better)
Translates to: NTLYPTPAPKQRDMNNQLVMSTV*LISWTS
Trigger: GCTAGTCCAAGATATGAGCAAGACAGTGGACATGAC...TAATTGGTTATTCATGTCCCTTTGTTTGGGGGCTGGGGTGGGATACAAAGTATT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000037011.6
CDS CCA 90 bp TGTCTTTTGAAAGTTTCTCCTTTAAGGTTTTGTAGGCACTGCTCATaGTGGTTACCCGGTGATTGGAATGATTCCCACCCAACTTACAGA +
Preference number: 5 (lower is better)
Translates to: CLLKVSPLRFCRHCS*WLPGDWNDSHPTYR
Trigger: TCTGTAAGTTGGGTGGGAATCATTCCAATCACCGGGTAACCACCATGAGCAGTGCCTACAAAACCTTAAAGGAGAAACTTTCAAAAGACA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000037011.6
ENSMUST00000167364.9
CDS-3UTR CAA 90 bp CCTTTATCACAGTCAAGGAAAATCCCTATACTCGTTGGCATGGGGAGAACTCTGTCCAAGCACCTCTGTTaGTTTCGATATGTTAACAAC +
Preference number: 5 (lower is better)
Translates to: PLSQSRKIPILVGMGRTLSKHLC*FRYVNN
Trigger: GTTGTTAACATATCGAAACAAACAGAGGTGCTTGGA...CAGAGTTCTCCCCATGCCAACGAGTATAGGGATTTTCCTTGACTGTGATAAAGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000237526.2
CDS-3UTR CAA 90 bp TATGTAATTAGATTAACATCAAGGCATGGCTTTGTTCACGGTTCTTATCCTCATAGCCACTCTTGCAGTTaGTCGCTGGAAGCAACTCCC +
Preference number: 5 (lower is better)
Translates to: YVIRLTSRHGFVHGSYPHSHSCS*SLEATP
Trigger: GGGAGTTGCTTCCAGCGACAAACTGCAAGAGTGGCT...ATGAGGATAAGAACCGTGAACAAAGCCATGCCTTGATGTTAATCTAATTACATA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037011.6
ENSMUST00000167364.9
ENSMUST00000237526.2
CDS GCA 90 bp AATCAATGTCTTTTGAAAGTTTCTCCTTTAAGGTTTTGTAGGCACTaGTCATGGTGGTTACCCGGTGATTGGAATGATTCCCACCCAACT +
Preference number: 5 (lower is better)
Translates to: NQCLLKVSPLRFCRH*SWWLPGDWNDSHPT
Trigger: AGTTGGGTGGGAATCATTCCAATCACCGGGTAACCACCATGAGCAGTGCCTACAAAACCTTAAAGGAGAAACTTTCAAAAGACATTGATT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000037011.6
ENSMUST00000167364.9
CDS GCA 90 bp ACGCATAGGGACTGTTGCTTTCAAGGTTGGAGACAACTTTACTTGTaGCGTGAACTTCTATCTCATTCCATGATATCATTTCTTCGTCTC +
Preference number: 5 (lower is better)
Translates to: THRDCCFQGWRQLYL*RELLSHSMISFLRL
Trigger: GAGACGAAGAAATGATATCATGGAATGAGATAGAAGTTCACGGCACAAGTAAAGTTGTCTCCAACCTTGAAAGCAACAGTCCCTATGCGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037011.6
ENSMUST00000167364.9
ENSMUST00000237526.2
CDS-3UTR CAA 90 bp TATGTAATTAGATTAACATCAAGGCATGGCTTTGTTCACGGTTCTTATCCTCATTGGGTAAACAGCTCCTaGCACGCTGGGCAAATAAGC +
Preference number: 5 (lower is better)
Translates to: YVIRLTSRHGFVHGSYPHWVNSS*HAGQIS
Trigger: GCTTATTTGCCCAGCGTGCAAGGAGCTGTTTACCCA...ATGAGGATAAGAACCGTGAACAAAGCCATGCCTTGATGTTAATCTAATTACATA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037011.6
ENSMUST00000167364.9
CDS-3UTR CAA 90 bp AATACTTTGTATCCCACCCCAGCCCCCAAACAAAGGGACATGAATAACCAATTATTACTCTGTTCCTCGTaGATCTCAGGAATGTCTATG +
Preference number: 5 (lower is better)
Translates to: NTLYPTPAPKQRDMNNQLLLCSS*ISGMSM
Trigger: CATAGACATTCCTGAGATCAACGAGGAACAGAGTAA...TAATTGGTTATTCATGTCCCTTTGTTTGGGGGCTGGGGTGGGATACAAAGTATT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000037011.6
CDS-3UTR CAA 90 bp ACAAAGAGACACGTGTTCACTATCAGTCCATCTTCCCTAGTAATTCTGAAAAATCAAAGGCCGGATACATaGTATGCGAACAGTCCACCT +
Preference number: 5 (lower is better)
Translates to: TKRHVFTISPSSLVILKNQRPDT*YANSPP
Trigger: AGGTGGACTGTTCGCATACAATGTATCCGGCCTTTG...ATTTTTCAGAATTACTAGGGAAGATGGACTGATAGTGAACACGTGTCTCTTTGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000037011.6
CDS-3UTR CAA 90 bp GTAACATGTAACATGTCTGGTATTTCAATGCTGCTGAAAATGGGCAGTGAACTTATTCATTGCAGTAGCTaGCACTACAATCCATGCAGC +
Preference number: 5 (lower is better)
Translates to: VTCNMSGISMLLKMGSELIHCSS*HYNPCS
Trigger: GCTGCATGGATTGTAGTGCAAGCTACTGCAATGAAT...AAGTTCACTGCCCATTTTCAGCAGCATTGAAATACCAGACATGTTACATGTTAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037011.6
CDS-3UTR CAA 90 bp TATGTAATTAGATTAACATCAAGGCATGGCTTTGTTCACGGTTCTTATCCTCATTTCGCCCTCTCTCCGTaGCACTCTGTCTCTTTCATT +
Preference number: 5 (lower is better)
Translates to: YVIRLTSRHGFVHGSYPHFALSP*HSVSFI
Trigger: AATGAAAGAGACAGAGTGCAACGGAGAGAGGGCGAA...ATGAGGATAAGAACCGTGAACAAAGCCATGCCTTGATGTTAATCTAATTACATA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037011.6
ENSMUST00000167364.9
CDS-3UTR CAA 90 bp AATACTTTGTATCCCACCCCAGCCCCCAAACAAAGGGACATGAATAACCAATTATCCAAGCACCTCTGTTaGTTTCGATATGTTAACAAC +
Preference number: 5 (lower is better)
Translates to: NTLYPTPAPKQRDMNNQLSKHLC*FRYVNN
Trigger: GTTGTTAACATATCGAAACAAACAGAGGTGCTTGGA...TAATTGGTTATTCATGTCCCTTTGTTTGGGGGCTGGGGTGGGATACAAAGTATT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000037011.6
CDS-3UTR CAA 90 bp TGTAACATGTCTGGTATTTCAATGCTGCTGAAAATGGGCAGTGAACTTCTCAGACTGTTGCTTTCAAGGTaGGAGACAACTTTACTTGTG +
Preference number: 5 (lower is better)
Translates to: CNMSGISMLLKMGSELLRLLLSR*ETTLLV
Trigger: CACAAGTAAAGTTGTCTCCAACCTTGAAAGCAACAG...TCTGAGAAGTTCACTGCCCATTTTCAGCAGCATTGAAATACCAGACATGTTACA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037011.6
CDS-3UTR CAA 90 bp ACTGTCATGTCCACTGTCTTGCTCATATCTAAAGCACAGACTATAAGTTGTCCTCTGTTGCTTTCAAGGTaGGAGACAACTTTACTTGTG +
Preference number: 5 (lower is better)
Translates to: TVMSTVLLISKAQTISCPLLLSR*ETTLLV
Trigger: CACAAGTAAAGTTGTCTCCAACCTTGAAAGCAACAG...AGGACAACTTATAGTCTGTGCTTTAGATATGAGCAAGACAGTGGACATGACAGT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000237526.2
CDS-3UTR CAA 90 bp TATGTAATTAGATTAACATCAAGGCATGGCTTTGTTCACGGTTCTTATCCTCATCAAAGGCCGGATACATaGTATGCGAACAGTCCACCT +
Preference number: 5 (lower is better)
Translates to: YVIRLTSRHGFVHGSYPHQRPDT*YANSPP
Trigger: AGGTGGACTGTTCGCATACAATGTATCCGGCCTTTG...ATGAGGATAAGAACCGTGAACAAAGCCATGCCTTGATGTTAATCTAATTACATA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037011.6
ENSMUST00000167364.9
CDS-3UTR CAA 90 bp TATGTAATTAGATTAACATCAAGGCATGGCTTTGTTCACGGTTCTTATCCTCATGTCATGTCCACTGTCTaGCTCATATCTTGGACTAGC +
Preference number: 5 (lower is better)
Translates to: YVIRLTSRHGFVHGSYPHVMSTV*LISWTS
Trigger: GCTAGTCCAAGATATGAGCAAGACAGTGGACATGAC...ATGAGGATAAGAACCGTGAACAAAGCCATGCCTTGATGTTAATCTAATTACATA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037011.6
ENSMUST00000167364.9
CDS-3UTR CAA 90 bp TATGTAATTAGATTAACATCAAGGCATGGCTTTGTTCACGGTTCTTATCCTCATAAATCCCTATACTCGTaGGCATGGGGAGAACTCTGT +
Preference number: 5 (lower is better)
Translates to: YVIRLTSRHGFVHGSYPHKSLYS*AWGELC
Trigger: ACAGAGTTCTCCCCATGCCAACGAGTATAGGGATTT...ATGAGGATAAGAACCGTGAACAAAGCCATGCCTTGATGTTAATCTAATTACATA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037011.6
ENSMUST00000167364.9
CDS-3UTR CAA 90 bp TATGTAATTAGATTAACATCAAGGCATGGCTTTGTTCACGGTTCTTATCCTCATATTCATTGCAGTAGCTaGCACTACAATCCATGCAGC +
Preference number: 5 (lower is better)
Translates to: YVIRLTSRHGFVHGSYPHIHCSS*HYNPCS
Trigger: GCTGCATGGATTGTAGTGCAAGCTACTGCAATGAAT...ATGAGGATAAGAACCGTGAACAAAGCCATGCCTTGATGTTAATCTAATTACATA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037011.6
ENSMUST00000167364.9
CDS-3UTR CAA 90 bp TATGTAATTAGATTAACATCAAGGCATGGCTTTGTTCACGGTTCTTATCCTCATTTCACCTGGCTTTCCTaGCCAATAAGGAAATCAATG +
Preference number: 5 (lower is better)
Translates to: YVIRLTSRHGFVHGSYPHFTWLS*PIRKSM
Trigger: CATTGATTTCCTTATTGGCAAGGAAAGCCAGGTGAA...ATGAGGATAAGAACCGTGAACAAAGCCATGCCTTGATGTTAATCTAATTACATA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037011.6
ENSMUST00000167364.9
CDS-3UTR CAA 90 bp TATGTAATTAGATTAACATCAAGGCATGGCTTTGTTCACGGTTCTTATCCTCATTTACTCTGTTCCTCGTaGATCTCAGGAATGTCTATG +
Preference number: 5 (lower is better)
Translates to: YVIRLTSRHGFVHGSYPHLLCSS*ISGMSM
Trigger: CATAGACATTCCTGAGATCAACGAGGAACAGAGTAA...ATGAGGATAAGAACCGTGAACAAAGCCATGCCTTGATGTTAATCTAATTACATA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037011.6
ENSMUST00000167364.9
ENSMUST00000237526.2
CDS-3UTR CAA 90 bp TATGTAATTAGATTAACATCAAGGCATGGCTTTGTTCACGGTTCTTATCCTCATCTGTTGCTTTCAAGGTaGGAGACAACTTTACTTGTG +
Preference number: 5 (lower is better)
Translates to: YVIRLTSRHGFVHGSYPHLLLSR*ETTLLV
Trigger: CACAAGTAAAGTTGTCTCCAACCTTGAAAGCAACAG...ATGAGGATAAGAACCGTGAACAAAGCCATGCCTTGATGTTAATCTAATTACATA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037011.6
ENSMUST00000167364.9
ENSMUST00000237526.2
CDS-3UTR CAA 90 bp TATGTAATTAGATTAACATCAAGGCATGGCTTTGTTCACGGTTCTTATCCTCATTCCAAGCACCTCTGTTaGTTTCGATATGTTAACAAC +
Preference number: 5 (lower is better)
Translates to: YVIRLTSRHGFVHGSYPHSKHLC*FRYVNN
Trigger: GTTGTTAACATATCGAAACAAACAGAGGTGCTTGGA...ATGAGGATAAGAACCGTGAACAAAGCCATGCCTTGATGTTAATCTAATTACATA
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037011.6
ENSMUST00000167364.9
ENSMUST00000237526.2
CDS TCA 72 bp ATGCTAGGGGAGGTGAGCCGGAGCCTAGGGCTGCTCTaGTTTGAGCTGTCTGACGCCACATCATTGAACGAG +
Preference number: 6 (lower is better)
Translates to: MLGEVSRSLGLL*FELSDATSLNE
Trigger: CTCGTTCAATGATGTGGCGTCAGACAGCTCAAATCAGAGCAGCCCTAGGCTCCGGCTCACCTCCCCTAGCAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037011.6
ENSMUST00000167364.9
CDS CAA 72 bp TGGACTAGCTGCATCTCGGGGAGAGCGCAGCCACTCTaGCAGTTTGTCGCTGGAAGCAACTCCCACTTTCAC +
Preference number: 6 (lower is better)
Translates to: WTSCISGRAQPL*QFVAGSNSHFH
Trigger: GTGAAAGTGGGAGTTGCTTCCAGCGACAAACTGCAAGAGTGGCTGCGCTCTCCCCGAGATGCAGCTAGTCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000037011.6
ENSMUST00000167364.9
ENSMUST00000237526.2
CDS CCA 72 bp CTCGGGGAGAGCGCAGCCACTCTTGCAGTTTGTCGCTaGAAGCAACTCCCACTTTCACCAGGTATGAATACG +
Preference number: 6 (lower is better)
Translates to: LGESAATLAVCR*KQLPLSPGMNT
Trigger: CGTATTCATACCTGGTGAAAGTGGGAGTTGCTTCCAGCGACAAACTGCAAGAGTGGCTGCGCTCTCCCCGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000037011.6
ENSMUST00000167364.9
ENSMUST00000237526.2
CDS CCA 72 bp GCTTCCACTGTCATGTCCACTGTCTTGCTCATATCTTaGACTAGCTGCATCTCGGGGAGAGCGCAGCCACTC +
Preference number: 6 (lower is better)
Translates to: ASTVMSTVLLIS*TSCISGRAQPL
Trigger: GAGTGGCTGCGCTCTCCCCGAGATGCAGCTAGTCCAAGATATGAGCAAGACAGTGGACATGACAGTGGAAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037011.6
ENSMUST00000167364.9
CDS CAA 72 bp CCACATCATGTTCACAGCCAGGACAAGGGAACGTGGTaGGTCTCGGGGTCAGTGAATTACGCTTCCAGCCTG +
Preference number: 6 (lower is better)
Translates to: PHHVHSQDKGTW*VSGSVNYASSL
Trigger: CAGGCTGGAAGCGTAATTCACTGACCCCGAGACCAACCACGTTCCCTTGTCCTGGCTGTGAACATGATGTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037011.6
ENSMUST00000167364.9
CDS CAA 90 bp CTTGGACTAGCTGCATCTCGGGGAGAGCGCAGCCACTCTTGCAGTTaGTCGCTGGAAGCAACTCCCACTTTCACCAGGTATGAATACGGT +
Preference number: 6 (lower is better)
Translates to: LGLAASRGERSHSCS*SLEATPTFTRYEYG
Trigger: ACCGTATTCATACCTGGTGAAAGTGGGAGTTGCTTCCAGCGACAAACTGCAAGAGTGGCTGCGCTCTCCCCGAGATGCAGCTAGTCCAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000037011.6
ENSMUST00000167364.9
ENSMUST00000237526.2
CDS TCA 72 bp GCCAGGACAAGGGAACGTGGTTGGTCTCGGGGTCAGTaGATTACGCTTCCAGCCTGGTCTGTTAATCTTGTC +
Preference number: 6 (lower is better)
Translates to: ARTRERGWSRGQ*ITLPAWSVNLV
Trigger: GACAAGATTAACAGACCAGGCTGGAAGCGTAATTCACTGACCCCGAGACCAACCACGTTCCCTTGTCCTGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037011.6
ENSMUST00000167364.9
CDS GCA 72 bp TGGAGGTTTACAAAGGTCACACATAATGGCTGTGGCTaGCCTAGCGGCCTGCCGGTATCTCTCGACAATCGT +
Preference number: 6 (lower is better)
Translates to: WRFTKVTHNGCG*PSGLPVSLDNR
Trigger: ACGATTGTCGAGAGATACCGGCAGGCCGCTAGGGCAGCCACAGCCATTATGTGTGACCTTTGTAAACCTCCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037011.6
ENSMUST00000167364.9
CDS CCA 72 bp GATCCACATCATGTTCACAGCCAGGACAAGGGAACGTaGTTGGTCTCGGGGTCAGTGAATTACGCTTCCAGC +
Preference number: 6 (lower is better)
Translates to: DPHHVHSQDKGT*LVSGSVNYASS
Trigger: GCTGGAAGCGTAATTCACTGACCCCGAGACCAACCACGTTCCCTTGTCCTGGCTGTGAACATGATGTGGATC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037011.6
ENSMUST00000167364.9
CDS CAA 72 bp ACAGGCGTCCTCGCTTCCACTGTCATGTCCACTGTCTaGCTCATATCTTGGACTAGCTGCATCTCGGGGAGA +
Preference number: 6 (lower is better)
Translates to: TGVLASTVMSTV*LISWTSCISGR
Trigger: TCTCCCCGAGATGCAGCTAGTCCAAGATATGAGCAAGACAGTGGACATGACAGTGGAAGCGAGGACGCCTGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037011.6
ENSMUST00000167364.9
CDS CAA 90 bp AGAATCAAAACAGGCGTCCTCGCTTCCACTGTCATGTCCACTGTCTaGCTCATATCTTGGACTAGCTGCATCTCGGGGAGAGCGCAGCCA +
Preference number: 6 (lower is better)
Translates to: RIKTGVLASTVMSTV*LISWTSCISGRAQP
Trigger: TGGCTGCGCTCTCCCCGAGATGCAGCTAGTCCAAGATATGAGCAAGACAGTGGACATGACAGTGGAAGCGAGGACGCCTGTTTTGATTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000037011.6
ENSMUST00000167364.9
CDS TCA 72 bp TTTGTCGCTGGAAGCAACTCCCACTTTCACCAGGTATaGATACGGTTCCACGCGGCAGGCCCAGAAGTGTTT +
Preference number: 6 (lower is better)
Translates to: FVAGSNSHFHQV*IRFHAAGPEVF
Trigger: AAACACTTCTGGGCCTGCCGCGTGGAACCGTATTCATACCTGGTGAAAGTGGGAGTTGCTTCCAGCGACAAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037011.6
ENSMUST00000167364.9
ENSMUST00000237526.2
CDS GCA 72 bp GTCATGTCCACTGTCTTGCTCATATCTTGGACTAGCTaGATCTCGGGGAGAGCGCAGCCACTCTTGCAGTTT +
Preference number: 6 (lower is better)
Translates to: VMSTVLLISWTS*ISGRAQPLLQF
Trigger: AAACTGCAAGAGTGGCTGCGCTCTCCCCGAGATGCAGCTAGTCCAAGATATGAGCAAGACAGTGGACATGAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037011.6
ENSMUST00000167364.9
CDS CAA 72 bp TGGCAGGGAAGGATCAGCGGGTGGGTAAACAGCTCCTaGCACGCTGGGCAAATAAGCTCCTTTTCGATATTC +
Preference number: 6 (lower is better)
Translates to: WQGRISGWVNSS*HAGQISSFSIF
Trigger: GAATATCGAAAAGGAGCTTATTTGCCCAGCGTGCAAGGAGCTGTTTACCCACCCGCTGATCCTTCCCTGCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037011.6
ENSMUST00000167364.9
CDS CAA 90 bp ACGCTGTGCTGGCAGGGAAGGATCAGCGGGTGGGTAAACAGCTCCTaGCACGCTGGGCAAATAAGCTCCTTTTCGATATTCTTAATAGTC +
Preference number: 6 (lower is better)
Translates to: TLCWQGRISGWVNSS*HAGQISSFSIFLIV
Trigger: GACTATTAAGAATATCGAAAAGGAGCTTATTTGCCCAGCGTGCAAGGAGCTGTTTACCCACCCGCTGATCCTTCCCTGCCAGCACAGCGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037011.6
ENSMUST00000167364.9
CDS TCA 72 bp TCATCAAGAGACAGTAAAAGTTCTTTCACACACTTATaGCAGACGCTGTGCTGGCAGGGAAGGATCAGCGGG +
Preference number: 6 (lower is better)
Translates to: SSRDSKSSFTHL*QTLCWQGRISG
Trigger: CCCGCTGATCCTTCCCTGCCAGCACAGCGTCTGTCATAAGTGTGTGAAAGAACTTTTACTGTCTCTTGATGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037011.6
ENSMUST00000167364.9
CDS CCA 72 bp TTTTGTAGGCACTGCTCATGGTGGTTACCCGGTGATTaGAATGATTCCCACCCAACTTACAGAGGTGGCAAA +
Preference number: 6 (lower is better)
Translates to: FCRHCSWWLPGD*NDSHPTYRGGK
Trigger: TTTGCCACCTCTGTAAGTTGGGTGGGAATCATTCCAATCACCGGGTAACCACCATGAGCAGTGCCTACAAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037011.6
ENSMUST00000167364.9
CDS CAA 72 bp AAATGCGCCAGCGCTTCTTCCTTCGCCCTCTCTCCGTaGCACTCTGTCTCTTTCATTAGCAAGTTTAGTTCA +
Preference number: 6 (lower is better)
Translates to: KCASASSFALSP*HSVSFISKFSS
Trigger: TGAACTAAACTTGCTAATGAAAGAGACAGAGTGCAACGGAGAGAGGGCGAAGGAAGAAGCGCTGGCGCATTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037011.6
ENSMUST00000167364.9
CDS CCA 72 bp ACTACAATCCATGCAGCTCTTTGTAGATTCCTGGGGTaGAGGTTTACAAAGGTCACACATAATGGCTGTGGC +
Preference number: 6 (lower is better)
Translates to: TTIHAALCRFLG*RFTKVTHNGCG
Trigger: GCCACAGCCATTATGTGTGACCTTTGTAAACCTCCACCCCAGGAATCTACAAAGAGCTGCATGGATTGTAGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037011.6
ENSMUST00000167364.9
CDS CCA 72 bp GTTTCTCCTTTAAGGTTTTGTAGGCACTGCTCATGGTaGTTACCCGGTGATTGGAATGATTCCCACCCAACT +
Preference number: 6 (lower is better)
Translates to: VSPLRFCRHCSW*LPGDWNDSHPT
Trigger: AGTTGGGTGGGAATCATTCCAATCACCGGGTAACCACCATGAGCAGTGCCTACAAAACCTTAAAGGAGAAAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037011.6
ENSMUST00000167364.9
CDS GCA 72 bp TCCCACCCAACTTACAGAGGTGGCAAACTGGCCTTCTaGATAGTTCACAGTACATGTTTATTCTCTCTGTCT +
Preference number: 6 (lower is better)
Translates to: SHPTYRGGKLAF*IVHSTCLFSLS
Trigger: AGACAGAGAGAATAAACATGTACTGTGAACTATGCAGAAGGCCAGTTTGCCACCTCTGTAAGTTGGGTGGGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037011.6
ENSMUST00000167364.9
CDS CCA 72 bp AAGGATCAGCGGGTGGGTAAACAGCTCCTTGCACGCTaGGCAAATAAGCTCCTTTTCGATATTCTTAATAGT +
Preference number: 6 (lower is better)
Translates to: KDQRVGKQLLAR*ANKLLFDILNS
Trigger: ACTATTAAGAATATCGAAAAGGAGCTTATTTGCCCAGCGTGCAAGGAGCTGTTTACCCACCCGCTGATCCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037011.6
ENSMUST00000167364.9
CDS CCA 72 bp CTTGCACTACAATCCATGCAGCTCTTTGTAGATTCCTaGGGTGGAGGTTTACAAAGGTCACACATAATGGCT +
Preference number: 6 (lower is better)
Translates to: LALQSMQLFVDS*GGGLQRSHIMA
Trigger: AGCCATTATGTGTGACCTTTGTAAACCTCCACCCCAGGAATCTACAAAGAGCTGCATGGATTGTAGTGCAAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037011.6
ENSMUST00000167364.9
CDS CCA 72 bp AAAGTTTCTCCTTTAAGGTTTTGTAGGCACTGCTCATaGTGGTTACCCGGTGATTGGAATGATTCCCACCCA +
Preference number: 6 (lower is better)
Translates to: KVSPLRFCRHCS*WLPGDWNDSHP
Trigger: TGGGTGGGAATCATTCCAATCACCGGGTAACCACCATGAGCAGTGCCTACAAAACCTTAAAGGAGAAACTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037011.6
ENSMUST00000167364.9
CDS CCA 72 bp TCACTCGGAACGCATAGGGACTGTTGCTTTCAAGGTTaGAGACAACTTTACTTGTGCCGTGAACTTCTATCT +
Preference number: 6 (lower is better)
Translates to: SLGTHRDCCFQG*RQLYLCRELLS
Trigger: AGATAGAAGTTCACGGCACAAGTAAAGTTGTCTCCAACCTTGAAAGCAACAGTCCCTATGCGTTCCGAGTGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037011.6
ENSMUST00000167364.9
ENSMUST00000237526.2
CDS GCA 72 bp CTTTTGAAAGTTTCTCCTTTAAGGTTTTGTAGGCACTaGTCATGGTGGTTACCCGGTGATTGGAATGATTCC +
Preference number: 6 (lower is better)
Translates to: LLKVSPLRFCRH*SWWLPGDWNDS
Trigger: GGAATCATTCCAATCACCGGGTAACCACCATGAGCAGTGCCTACAAAACCTTAAAGGAGAAACTTTCAAAAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000037011.6
ENSMUST00000167364.9
CDS GCA 72 bp GGGATGATAAATTTTGAAGCATTCATTGCAGTAGCTTaGACTACAATCCATGCAGCTCTTTGTAGATTCCTG +
Preference number: 6 (lower is better)
Translates to: GMINFEAFIAVA*TTIHAALCRFL
Trigger: CAGGAATCTACAAAGAGCTGCATGGATTGTAGTGCAAGCTACTGCAATGAATGCTTCAAAATTTATCATCCC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037011.6
ENSMUST00000167364.9
CDS CAA 72 bp ATCAAGGCGTTATTATACACTTTACTCTGTTCCTCGTaGATCTCAGGAATGTCTATGCCACTGGAGAAAAAG +
Preference number: 6 (lower is better)
Translates to: IKALLYTLLCSS*ISGMSMPLEKK
Trigger: CTTTTTCTCCAGTGGCATAGACATTCCTGAGATCAACGAGGAACAGAGTAAAGTGTATAATAACGCCTTGAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000037011.6
ENSMUST00000167364.9
ENSMUST00000237526.2
CDS TCA 72 bp TCTGTCTCTTTCATTAGCAAGTTTAGTTCAGAAATTTaGCTCTTCACCTGGCTTTCCTTGCCAATAAGGAAA +
Preference number: 6 (lower is better)
Translates to: SVSFISKFSSEI*LFTWLSLPIRK
Trigger: TTTCCTTATTGGCAAGGAAAGCCAGGTGAAGAGTCAAATTTCTGAACTAAACTTGCTAATGAAAGAGACAGA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037011.6
ENSMUST00000167364.9
CDS TCA 72 bp AACTTTACTTGTGCCGTGAACTTCTATCTCATTCCATaGTATCATTTCTTCGTCTCTATTAATCTTGCGGTA +
Preference number: 6 (lower is better)
Translates to: NFTCAVNFYLIP*YHFFVSINLAV
Trigger: TACCGCAAGATTAATAGAGACGAAGAAATGATATCATGGAATGAGATAGAAGTTCACGGCACAAGTAAAGTT
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037011.6
ENSMUST00000167364.9
ENSMUST00000237526.2