Pregenerated sensors for TRIM34B (Mus musculus)
Ensembl gene IDs: ENSMUSG00000090215Ensembl transcript IDs: ENSMUST00000106847.9, ENSMUST00000180136.2
Found 16 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | ACCACATCCAAGCATGACAGAAGGGAGACCATGGGAAGAGATGCCTaGACAGCACAGGTCCATCCACACGGTAAGCATCAAGGCCAGAAG | + |
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Preference number: 1 (lower is better) Translates to: TTSKHDRRETMGRDA*TAQVHPHGKHQGQK Trigger: CTTCTGGCCTTGATGCTTACCGTGTGGATGGACCTGTGCTGTTCAGGCATCTCTTCCCATGGTCTCCCTTCTGTCATGCTTGGATGTGGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106847.9 |
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| 3UTR CCA 90 bp | ATGATGCCAGATACACCACATCCAAGCATGACAGAAGGGAGACCATaGGAAGAGATGCCTGAACAGCACAGGTCCATCCACACGGTAAGC | + |
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Preference number: 1 (lower is better) Translates to: MMPDTPHPSMTEGRP*EEMPEQHRSIHTVS Trigger: GCTTACCGTGTGGATGGACCTGTGCTGTTCAGGCATCTCTTCCCATGGTCTCCCTTCTGTCATGCTTGGATGTGGTGTATCTGGCATCAT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106847.9 |
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| 3UTR CCA 72 bp | GATACACCACATCCAAGCATGACAGAAGGGAGACCATaGGAAGAGATGCCTGAACAGCACAGGTCCATCCAC | + |
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Preference number: 3 (lower is better) Translates to: DTPHPSMTEGRP*EEMPEQHRSIH Trigger: GTGGATGGACCTGTGCTGTTCAGGCATCTCTTCCCATGGTCTCCCTTCTGTCATGCTTGGATGTGGTGTATC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106847.9 |
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| CDS-3UTR CCA 90 bp | GAAGGGAGACCATGGGAAGAGATGCCTGAACAGCACAGGTCCATCCACACGGTACTCTCAGTCTGGACCTaGCGCTTCCAGGAAAGTCTG | + |
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Preference number: 4 (lower is better) Translates to: EGRPWEEMPEQHRSIHTVLSVWT*RFQESL Trigger: CAGACTTTCCTGGAAGCGCCAGGTCCAGACTGAGAG...TACCGTGTGGATGGACCTGTGCTGTTCAGGCATCTCTTCCCATGGTCTCCCTTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106847.9 |
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| CDS-3UTR CCA 90 bp | GAAGGGAGACCATGGGAAGAGATGCCTGAACAGCACAGGTCCATCCACACGGTAAAAATCCCAACCCGATaGAGAGGGGTGGCCACAAAG | + |
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Preference number: 4 (lower is better) Translates to: EGRPWEEMPEQHRSIHTVKIPTR*RGVATK Trigger: CTTTGTGGCCACCCCTCTCCATCGGGTTGGGATTTT...TACCGTGTGGATGGACCTGTGCTGTTCAGGCATCTCTTCCCATGGTCTCCCTTC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000106847.9 |
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| CDS-3UTR TCA 90 bp | CAGAAGGGAGACCATGGGAAGAGATGCCTGAACAGCACAGGTCCATCCACACGGCATTCTTGTTCGAGATaGGACAGGCTTGGCATACAA | + |
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Preference number: 4 (lower is better) Translates to: QKGDHGKRCLNSTGPSTRHSCSR*DRLGIQ Trigger: TTGTATGCCAAGCCTGTCTCATCTCGAACAAGAATG...CCGTGTGGATGGACCTGTGCTGTTCAGGCATCTCTTCCCATGGTCTCCCTTCTG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106847.9 |
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| CDS-3UTR TCA 90 bp | TTCAAGACAAAGGGAAATATGGAAGGCAGAGGGCATGGATATTATCCTGACCTATTTTCCCTCTGGGGTTaGTCACTGCATTCTTGTTCG | + |
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Preference number: 4 (lower is better) Translates to: FKTKGNMEGRGHGYYPDLFSLWG*SLHSCS Trigger: CGAACAAGAATGCAGTGATCAACCCCAGAGGGAAAA...TAGGTCAGGATAATATCCATGCCCTCTGCCTTCCATATTTCCCTTTGTCTTGAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000106847.9 |
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| CDS-3UTR CCA 90 bp | TGGCTAATAGACTTTGTCACGTTTCTTCAAGACAAAGGGAAATATGGAAGGCAGCTGAGGAGAAACATTTaGAGCCCAAAATACCATTAT | + |
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Preference number: 4 (lower is better) Translates to: WLIDFVTFLQDKGKYGRQLRRNI*SPKYHY Trigger: ATAATGGTATTTTGGGCTCCAAATGTTTCTCCTCAG...CTGCCTTCCATATTTCCCTTTGTCTTGAAGAAACGTGACAAAGTCTATTAGCCA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000106847.9 |
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| CDS CCA 90 bp | ACAAGGTGGCCACAGCCTAGACTCAGGGCTTTGGTCAAAAGCTCTTaGCAGACAGGGCAAGTGGTCTTCTCCTGTATATTCGTCGGGCCT | + |
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Preference number: 5 (lower is better) Translates to: TRWPQPRLRALVKSS*QTGQVVFSCIFVGP Trigger: AGGCCCGACGAATATACAGGAGAAGACCACTTGCCCTGTCTGCCAAGAGCTTTTGACCAAAGCCCTGAGTCTAGGCTGTGGCCACCTTGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000106847.9 ENSMUST00000180136.2 |
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| CDS CCA 90 bp | ATCACTGCATTCTTGTTCGAGATGAGACAGGCTTGGCATACAAGGTaGCCACAGCCTAGACTCAGGGCTTTGGTCAAAAGCTCTTGGCAG | + |
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Preference number: 5 (lower is better) Translates to: ITAFLFEMRQAWHTR*PQPRLRALVKSSWQ Trigger: CTGCCAAGAGCTTTTGACCAAAGCCCTGAGTCTAGGCTGTGGCCACCTTGTATGCCAAGCCTGTCTCATCTCGAACAAGAATGCAGTGAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000106847.9 ENSMUST00000180136.2 |
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| CDS-3UTR CAA 90 bp | CAGAAGGGAGACCATGGGAAGAGATGCCTGAACAGCACAGGTCCATCCACACGGCCTGAGGAGAAACATTaGGAGCCCAAAATACCATTA | + |
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Preference number: 5 (lower is better) Translates to: QKGDHGKRCLNSTGPSTRPEEKH*EPKIPL Trigger: TAATGGTATTTTGGGCTCCAAATGTTTCTCCTCAGG...CCGTGTGGATGGACCTGTGCTGTTCAGGCATCTCTTCCCATGGTCTCCCTTCTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000106847.9 |
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| CDS-3UTR CAA 90 bp | AAGACAAAGGGAAATATGGAAGGCAGAGGGCATGGATATTATCCTGACCTAGCTCGAGATGAGACAGGCTaGGCATACAAGGTGGCCACA | + |
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Preference number: 5 (lower is better) Translates to: KTKGNMEGRGHGYYPDLARDETG*AYKVAT Trigger: TGTGGCCACCTTGTATGCCAAGCCTGTCTCATCTCG...AGCTAGGTCAGGATAATATCCATGCCCTCTGCCTTCCATATTTCCCTTTGTCTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106847.9 |
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| CDS-3UTR CAA 90 bp | GTGGCTAATAGACTTTGTCACGTTTCTTCAAGACAAAGGGAAATATGGAAGGCACCATGGTTGGTGACATaGAGGAAGGACACTGTGCCC | + |
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Preference number: 5 (lower is better) Translates to: VANRLCHVSSRQREIWKAPWLVT*RKDTVP Trigger: GGGCACAGTGTCCTTCCTCAATGTCACCAACCATGG...TGCCTTCCATATTTCCCTTTGTCTTGAAGAAACGTGACAAAGTCTATTAGCCAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106847.9 |
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| CDS-3UTR CAA 90 bp | TGGCTAATAGACTTTGTCACGTTTCTTCAAGACAAAGGGAAATATGGAAGGCAGCTTTTCCCTCTGGGGTaGATCACTGCATTCTTGTTC | + |
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Preference number: 5 (lower is better) Translates to: WLIDFVTFLQDKGKYGRQLFPLG*ITAFLF Trigger: GAACAAGAATGCAGTGATCAACCCCAGAGGGAAAAG...CTGCCTTCCATATTTCCCTTTGTCTTGAAGAAACGTGACAAAGTCTATTAGCCA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000106847.9 |
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| CDS GCA 72 bp | CACAGGACAGCTGCTTTTCCCTCTGGGGTTGATCACTaGATTCTTGTTCGAGATGAGACAGGCTTGGCATAC | + |
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Preference number: 6 (lower is better) Translates to: HRTAAFPSGVDH*ILVRDETGLAY Trigger: GTATGCCAAGCCTGTCTCATCTCGAACAAGAATGCAGTGATCAACCCCAGAGGGAAAAGCAGCTGTCCTGTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000106847.9 ENSMUST00000180136.2 |
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| CDS CAA 72 bp | CAGCTGCTTTTCCCTCTGGGGTTGATCACTGCATTCTaGTTCGAGATGAGACAGGCTTGGCATACAAGGTGG | + |
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Preference number: 6 (lower is better) Translates to: QLLFPLGLITAF*FEMRQAWHTRW Trigger: CCACCTTGTATGCCAAGCCTGTCTCATCTCGAACAAGAATGCAGTGATCAACCCCAGAGGGAAAAGCAGCTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000106847.9 ENSMUST00000180136.2 |
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