Pregenerated sensors for TRIM31 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000058063Ensembl transcript IDs: ENSMUST00000078438.5
Found 74 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | TGGCCGACTCTGTACAACCTCTGGTTCTCAGATCTCAGGAAAGGATaGGTCACAAGAGTTTCAGGTAATACAGTAGAGAAAGCAGCAGCC | + |
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Preference number: 1 (lower is better) Translates to: WPTLYNLWFSDLRKG*VTRVSGNTVEKAAA Trigger: GGCTGCTGCTTTCTCTACTGTATTACCTGAAACTCTTGTGACTCATCCTTTCCTGAGATCTGAGAACCAGAGGTTGTACAGAGTCGGCCA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078438.5 |
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| 3UTR CCA 90 bp | GATTGTAGATTGTCCAAATCTACAAACGGGGCATTGGCACAGAACTaGCCGACTCTGTACAACCTCTGGTTCTCAGATCTCAGGAAAGGA | + |
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Preference number: 1 (lower is better) Translates to: DCRLSKSTNGALAQN*PTLYNLWFSDLRKG Trigger: TCCTTTCCTGAGATCTGAGAACCAGAGGTTGTACAGAGTCGGCCAGTTCTGTGCCAATGCCCCGTTTGTAGATTTGGACAATCTACAATC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078438.5 |
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| 3UTR CCA 90 bp | GTTTTATTCTTGATTGTAGATTGTCCAAATCTACAAACGGGGCATTaGCACAGAACTGGCCGACTCTGTACAACCTCTGGTTCTCAGATC | + |
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Preference number: 1 (lower is better) Translates to: VLFLIVDCPNLQTGH*HRTGRLCTTSGSQI Trigger: GATCTGAGAACCAGAGGTTGTACAGAGTCGGCCAGTTCTGTGCCAATGCCCCGTTTGTAGATTTGGACAATCTACAATCAAGAATAAAAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000078438.5 |
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| 3UTR CAA 90 bp | TGGCATGTAGAGTGTCAGAGTAGGGCCACACTTCACTTCTACCATTaGTCTCATCCCGTCCTGAGTGATAGGTGGGAAGAGACTGAGGAA | + |
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Preference number: 2 (lower is better) Translates to: WHVECQSRATLHFYH*SHPVLSDRWEETEE Trigger: TTCCTCAGTCTCTTCCCACCTATCACTCAGGACGGGATGAGACAAATGGTAGAAGTGAAGTGTGGCCCTACTCTGACACTCTACATGCCA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078438.5 |
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| 3UTR-3UTR CCA 90 bp | AAACATCAGGTGATTGTGTGGCATGTAGAGTGTCAGAGTAGGGCCACACTTCACGTCCTGAGTGATAGGTaGGAAGAGACTGAGGAACAC | + |
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Preference number: 2 (lower is better) Translates to: KHQVIVWHVECQSRATLHVLSDR*EETEEH Trigger: GTGTTCCTCAGTCTCTTCCCACCTATCACTCAGGAC...GTGAAGTGTGGCCCTACTCTGACACTCTACATGCCACACAATCACCTGATGTTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078438.5 |
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| 3UTR-3UTR CCA 90 bp | CTTGATTGTAGATTGTCCAAATCTACAAACGGGGCATTGGCACAGAACTGGCCGCATCAGGTGATTGTGTaGCATGTAGAGTGTCAGAGT | + |
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Preference number: 2 (lower is better) Translates to: LDCRLSKSTNGALAQNWPHQVIV*HVECQS Trigger: ACTCTGACACTCTACATGCCACACAATCACCTGATG...CGGCCAGTTCTGTGCCAATGCCCCGTTTGTAGATTTGGACAATCTACAATCAAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078438.5 |
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| 3UTR CAA 90 bp | GGTTTTATTCTTGATTGTAGATTGTCCAAATCTACAAACGGGGCATaGGCACAGAACTGGCCGACTCTGTACAACCTCTGGTTCTCAGAT | + |
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Preference number: 2 (lower is better) Translates to: GFILDCRLSKSTNGA*AQNWPTLYNLWFSD Trigger: ATCTGAGAACCAGAGGTTGTACAGAGTCGGCCAGTTCTGTGCCAATGCCCCGTTTGTAGATTTGGACAATCTACAATCAAGAATAAAACC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000078438.5 |
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| 3UTR TCA 72 bp | CCACACTTCACTTCTACCATTTGTCTCATCCCGTCCTaGGTGATAGGTGGGAAGAGACTGAGGAACACACAA | + |
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Preference number: 3 (lower is better) Translates to: PHFTSTICLIPS*VIGGKRLRNTQ Trigger: TTGTGTGTTCCTCAGTCTCTTCCCACCTATCACTCAGGACGGGATGAGACAAATGGTAGAAGTGAAGTGTGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078438.5 |
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| 3UTR CCA 72 bp | TTGATTGTAGATTGTCCAAATCTACAAACGGGGCATTaGCACAGAACTGGCCGACTCTGTACAACCTCTGGT | + |
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Preference number: 3 (lower is better) Translates to: LIVDCPNLQTGH*HRTGRLCTTSG Trigger: ACCAGAGGTTGTACAGAGTCGGCCAGTTCTGTGCCAATGCCCCGTTTGTAGATTTGGACAATCTACAATCAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078438.5 |
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| 3UTR TCA 72 bp | CTGTACAACCTCTGGTTCTCAGATCTCAGGAAAGGATaGGTCACAAGAGTTTCAGGTAATACAGTAGAGAAA | + |
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Preference number: 3 (lower is better) Translates to: LYNLWFSDLRKG*VTRVSGNTVEK Trigger: TTTCTCTACTGTATTACCTGAAACTCTTGTGACTCATCCTTTCCTGAGATCTGAGAACCAGAGGTTGTACAG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078438.5 |
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| 3UTR CAA 72 bp | GTAGAGAAAGCAGCAGCCAATGTGTTGGACAGCGCCTaGCACCCCTGTGTCAGCAGGGTGCAGCCAGAAGCT | + |
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Preference number: 4 (lower is better) Translates to: VEKAAANVLDSA*HPCVSRVQPEA Trigger: AGCTTCTGGCTGCACCCTGCTGACACAGGGGTGCAAGGCGCTGTCCAACACATTGGCTGCTGCTTTCTCTAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078438.5 |
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| CDS-3UTR CCA 90 bp | CATGTAGAGTGTCAGAGTAGGGCCACACTTCACTTCTACCATTTGTCTCATCCCTCTGCCTCCCACACCTaGCGGCCTGAGGAGAGGCCT | + |
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Preference number: 4 (lower is better) Translates to: HVECQSRATLHFYHLSHPSASHT*RPEERP Trigger: AGGCCTCTCCTCAGGCCGCCAGGTGTGGGAGGCAGA...GGGATGAGACAAATGGTAGAAGTGAAGTGTGGCCCTACTCTGACACTCTACATG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078438.5 |
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| CDS-3UTR GCA 90 bp | GCCGACTCTGTACAACCTCTGGTTCTCAGATCTCAGGAAAGGATGAGTCACAAGCAGGTCACCTCCTCCTaGAGTTGGCAGGCCAGAGGT | + |
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Preference number: 4 (lower is better) Translates to: ADSVQPLVLRSQERMSHKQVTSS*SWQARG Trigger: ACCTCTGGCCTGCCAACTGCAGGAGGAGGTGACCTG...CTTGTGACTCATCCTTTCCTGAGATCTGAGAACCAGAGGTTGTACAGAGTCGGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078438.5 |
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| CDS-3UTR TCA 90 bp | GGTTTTATTCTTGATTGTAGATTGTCCAAATCTACAAACGGGGCATTGGCACAGCCACACCTGGCGGCCTaGGGAGAGGCCTGGGGAACC | + |
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Preference number: 4 (lower is better) Translates to: GFILDCRLSKSTNGALAQPHLAA*GEAWGT Trigger: GGTTCCCCAGGCCTCTCCTCAGGCCGCCAGGTGTGG...CTGTGCCAATGCCCCGTTTGTAGATTTGGACAATCTACAATCAAGAATAAAACC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000078438.5 |
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| CDS-3UTR GCA 90 bp | CACTTCTACCATTTGTCTCATCCCGTCCTGAGTGATAGGTGGGAAGAGACTGAGCACCACACAGAGGAATaGCCCATCCTGCTCGCAGAA | + |
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Preference number: 4 (lower is better) Translates to: HFYHLSHPVLSDRWEETEHHTEE*PILLAE Trigger: TTCTGCGAGCAGGATGGGGCATTCCTCTGTGTGGTG...CTCAGTCTCTTCCCACCTATCACTCAGGACGGGATGAGACAAATGGTAGAAGTG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078438.5 |
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| CDS-3UTR GCA 90 bp | CTCTGTACAACCTCTGGTTCTCAGATCTCAGGAAAGGATGAGTCACAAGAGTTTTGCTTGGCTCCCTGCTaGTCCAGCCAGTCCAGCCTG | + |
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Preference number: 4 (lower is better) Translates to: LCTTSGSQISGKDESQEFCLAPC*SSQSSL Trigger: CAGGCTGGACTGGCTGGAGCAGCAGGGAGCCAAGCA...AAACTCTTGTGACTCATCCTTTCCTGAGATCTGAGAACCAGAGGTTGTACAGAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078438.5 |
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| CDS-3UTR CCA 90 bp | ATTGTAGATTGTCCAAATCTACAAACGGGGCATTGGCACAGAACTGGCCGACTCATTGTCTCAACTGCTTaGCTCCCTGCTGCTCCAGCC | + |
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Preference number: 4 (lower is better) Translates to: IVDCPNLQTGHWHRTGRLIVSTA*LPAAPA Trigger: GGCTGGAGCAGCAGGGAGCCAAGCAGTTGAGACAAT...GAGTCGGCCAGTTCTGTGCCAATGCCCCGTTTGTAGATTTGGACAATCTACAAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078438.5 |
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| CDS-3UTR CCA 90 bp | TGGCATGTAGAGTGTCAGAGTAGGGCCACACTTCACTTCTACCATTTGTCTCATCCAGCCAGTCCAGCCTaGACAGGAGGAAACTCTCTT | + |
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Preference number: 4 (lower is better) Translates to: WHVECQSRATLHFYHLSHPASPA*TGGNSL Trigger: AAGAGAGTTTCCTCCTGTCCAGGCTGGACTGGCTGG...ATGAGACAAATGGTAGAAGTGAAGTGTGGCCCTACTCTGACACTCTACATGCCA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078438.5 |
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| CDS-3UTR GCA 90 bp | CTTGATTGTAGATTGTCCAAATCTACAAACGGGGCATTGGCACAGAACTGGCCGACATATTGTCTCAACTaGTTGGCTCCCTGCTGCTCC | + |
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Preference number: 4 (lower is better) Translates to: LDCRLSKSTNGALAQNWPTYCLN*LAPCCS Trigger: GGAGCAGCAGGGAGCCAAGCAGTTGAGACAATATGT...CGGCCAGTTCTGTGCCAATGCCCCGTTTGTAGATTTGGACAATCTACAATCAAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078438.5 |
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| 3UTR CAA 72 bp | CTTGATTGTAGATTGTCCAAATCTACAAACGGGGCATaGGCACAGAACTGGCCGACTCTGTACAACCTCTGG | + |
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Preference number: 4 (lower is better) Translates to: LDCRLSKSTNGA*AQNWPTLYNLW Trigger: CCAGAGGTTGTACAGAGTCGGCCAGTTCTGTGCCAATGCCCCGTTTGTAGATTTGGACAATCTACAATCAAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078438.5 |
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| CDS-3UTR TCA 90 bp | ATTCTTGATTGTAGATTGTCCAAATCTACAAACGGGGCATTGGCACAGAACTGGGATCCTGAGAAAAGGTaGGGTCTGGGTCAGCTGAGG | + |
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Preference number: 4 (lower is better) Translates to: ILDCRLSKSTNGALAQNWDPEKR*GLGQLR Trigger: CCTCAGCTGACCCAGACCTCACCTTTTCTCAGGATC...CCAGTTCTGTGCCAATGCCCCGTTTGTAGATTTGGACAATCTACAATCAAGAAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000078438.5 |
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| CDS-3UTR TCA 90 bp | CTCTGTACAACCTCTGGTTCTCAGATCTCAGGAAAGGATGAGTCACAAGAGTTTGGGCTTTACAATTGGTaGATGGCTGGCATCCAGAGG | + |
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Preference number: 4 (lower is better) Translates to: LCTTSGSQISGKDESQEFGLYNW*MAGIQR Trigger: CCTCTGGATGCCAGCCATTCACCAATTGTAAAGCCC...AAACTCTTGTGACTCATCCTTTCCTGAGATCTGAGAACCAGAGGTTGTACAGAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078438.5 |
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| CDS-3UTR CCA 90 bp | CTTGATTGTAGATTGTCCAAATCTACAAACGGGGCATTGGCACAGAACTGGCCGTTTTGCCCCAAATCTTaGGCCTGTGACTCAATCTGC | + |
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Preference number: 4 (lower is better) Translates to: LDCRLSKSTNGALAQNWPFCPKS*ACDSIC Trigger: GCAGATTGAGTCACAGGCCCAAGATTTGGGGCAAAA...CGGCCAGTTCTGTGCCAATGCCCCGTTTGTAGATTTGGACAATCTACAATCAAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000078438.5 |
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| CDS-3UTR CCA 90 bp | TGGCATGTAGAGTGTCAGAGTAGGGCCACACTTCACTTCTACCATTTGTCTCATCAGGTCCTCAGGAACTaGGTTTGGGTTGAGAAACTG | + |
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Preference number: 4 (lower is better) Translates to: WHVECQSRATLHFYHLSHQVLRN*VWVEKL Trigger: CAGTTTCTCAACCCAAACCCAGTTCCTGAGGACCTG...ATGAGACAAATGGTAGAAGTGAAGTGTGGCCCTACTCTGACACTCTACATGCCA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078438.5 |
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| CDS-3UTR TCA 90 bp | AAACATCAGGTGATTGTGTGGCATGTAGAGTGTCAGAGTAGGGCCACACTTCACTTTTTCCAACCTGACTaGTACACTGCAGGCAGAAGT | + |
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Preference number: 4 (lower is better) Translates to: KHQVIVWHVECQSRATLHFFQPD*YTAGRS Trigger: ACTTCTGCCTGCAGTGTATCAGTCAGGTTGGAAAAA...GTGAAGTGTGGCCCTACTCTGACACTCTACATGCCACACAATCACCTGATGTTT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000078438.5 |
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| CDS-3UTR TCA 90 bp | TGGCATGTAGAGTGTCAGAGTAGGGCCACACTTCACTTCTACCATTTGTCTCATATCAAGGTGACATTGTaGGACTTGTGGTCCTTGGAG | + |
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Preference number: 4 (lower is better) Translates to: WHVECQSRATLHFYHLSHIKVTL*DLWSLE Trigger: CTCCAAGGACCACAAGTCTCACAATGTCACCTTGAT...ATGAGACAAATGGTAGAAGTGAAGTGTGGCCCTACTCTGACACTCTACATGCCA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078438.5 |
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| CDS-3UTR TCA 90 bp | GCCGACTCTGTACAACCTCTGGTTCTCAGATCTCAGGAAAGGATGAGTCACAAGGAACTGGGTTTGGGTTaGGAAACTGAAATTCCTTAC | + |
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Preference number: 4 (lower is better) Translates to: ADSVQPLVLRSQERMSHKELGLG*ETEIPY Trigger: GTAAGGAATTTCAGTTTCTCAACCCAAACCCAGTTC...CTTGTGACTCATCCTTTCCTGAGATCTGAGAACCAGAGGTTGTACAGAGTCGGC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078438.5 |
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| CDS-3UTR GCA 90 bp | CATGTAGAGTGTCAGAGTAGGGCCACACTTCACTTCTACCATTTGTCTCATCCCCAGGCTGTTCATGAATaGGCTTTTATCTCTCTTCCC | + |
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Preference number: 4 (lower is better) Translates to: HVECQSRATLHFYHLSHPQAVHE*AFISLP Trigger: GGGAAGAGAGATAAAAGCGCATTCATGAACAGCCTG...GGGATGAGACAAATGGTAGAAGTGAAGTGTGGCCCTACTCTGACACTCTACATG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000078438.5 |
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| CDS-3UTR CCA 90 bp | CACTTCTACCATTTGTCTCATCCCGTCCTGAGTGATAGGTGGGAAGAGACTGAGTCTTCCTTTTCTGCTTaGATGTCAGCAGGATCCATA | + |
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Preference number: 4 (lower is better) Translates to: HFYHLSHPVLSDRWEETESSFSA*MSAGSI Trigger: TATGGATCCTGCTGACATCCAAGCAGAAAAGGAAGA...CTCAGTCTCTTCCCACCTATCACTCAGGACGGGATGAGACAAATGGTAGAAGTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078438.5 |
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| CDS-3UTR TCA 90 bp | TGGCATGTAGAGTGTCAGAGTAGGGCCACACTTCACTTCTACCATTTGTCTCATGCCCACAGTCAATGGTaGCAGGATCTTGTAGAATTT | + |
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Preference number: 4 (lower is better) Translates to: WHVECQSRATLHFYHLSHAHSQW*QDLVEF Trigger: AAATTCTACAAGATCCTGTCACCATTGACTGTGGGC...ATGAGACAAATGGTAGAAGTGAAGTGTGGCCCTACTCTGACACTCTACATGCCA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078438.5 |
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| CDS-3UTR TCA 90 bp | CTTGATTGTAGATTGTCCAAATCTACAAACGGGGCATTGGCACAGAACTGGCCGTTTTCCTTGTGCCTCTaGCATCTTGAGTCTTCCTTT | + |
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Preference number: 4 (lower is better) Translates to: LDCRLSKSTNGALAQNWPFSLCL*HLESSF Trigger: AAAGGAAGACTCAAGATGTCAGAGGCACAAGGAAAA...CGGCCAGTTCTGTGCCAATGCCCCGTTTGTAGATTTGGACAATCTACAATCAAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000078438.5 |
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| CDS-3UTR TCA 90 bp | TGGCATGTAGAGTGTCAGAGTAGGGCCACACTTCACTTCTACCATTTGTCTCATTTTGGGTTGAGAAACTaGAATTCCTTACCCCTGCTC | + |
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Preference number: 4 (lower is better) Translates to: WHVECQSRATLHFYHLSHFGLRN*NSLPLL Trigger: GAGCAGGGGTAAGGAATTTCAGTTTCTCAACCCAAA...ATGAGACAAATGGTAGAAGTGAAGTGTGGCCCTACTCTGACACTCTACATGCCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000078438.5 |
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| CDS-3UTR TCA 90 bp | CATGTAGAGTGTCAGAGTAGGGCCACACTTCACTTCTACCATTTGTCTCATCCCACATTGGATCTTTTCTaGCGTTTTTCCAACCTGACT | + |
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Preference number: 4 (lower is better) Translates to: HVECQSRATLHFYHLSHPTLDLF*RFSNLT Trigger: AGTCAGGTTGGAAAAACGTCAGAAAAGATCCAATGT...GGGATGAGACAAATGGTAGAAGTGAAGTGTGGCCCTACTCTGACACTCTACATG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000078438.5 |
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| CDS-3UTR TCA 90 bp | ATTCTTGATTGTAGATTGTCCAAATCTACAAACGGGGCATTGGCACAGAACTGGCAAATCTTGGGCCTGTaGCTCAATCTGCACCTTGTA | + |
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Preference number: 4 (lower is better) Translates to: ILDCRLSKSTNGALAQNWQILGL*LNLHLV Trigger: TACAAGGTGCAGATTGAGTCACAGGCCCAAGATTTG...CCAGTTCTGTGCCAATGCCCCGTTTGTAGATTTGGACAATCTACAATCAAGAAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078438.5 |
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| CDS-3UTR TCA 90 bp | GGTTTTATTCTTGATTGTAGATTGTCCAAATCTACAAACGGGGCATTGGCACAGGTGCCTCTGACATCTTaGGTCTTCCTTTTCTGCTTG | + |
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Preference number: 4 (lower is better) Translates to: GFILDCRLSKSTNGALAQVPLTS*VFLFCL Trigger: CAAGCAGAAAAGGAAGACTCAAGATGTCAGAGGCAC...CTGTGCCAATGCCCCGTTTGTAGATTTGGACAATCTACAATCAAGAATAAAACC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000078438.5 |
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| CDS-3UTR GCA 90 bp | GGTTTTATTCTTGATTGTAGATTGTCCAAATCTACAAACGGGGCATTGGCACAGCTTGTAGAATTTCCATaGAGATGGGGCAGGTCACCT | + |
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Preference number: 4 (lower is better) Translates to: GFILDCRLSKSTNGALAQLVEFP*RWGRSP Trigger: AGGTGACCTGCCCCATCTGCATGGAAATTCTACAAG...CTGTGCCAATGCCCCGTTTGTAGATTTGGACAATCTACAATCAAGAATAAAACC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000078438.5 |
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| CDS-3UTR GCA 90 bp | CTCTGTACAACCTCTGGTTCTCAGATCTCAGGAAAGGATGAGTCACAAGAGTTTATTTTCTTGTCCTTTTaGCCCAAATCTTGGGCCTGT | + |
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Preference number: 4 (lower is better) Translates to: LCTTSGSQISGKDESQEFIFLSF*PKSWAC Trigger: ACAGGCCCAAGATTTGGGGCAAAAGGACAAGAAAAT...AAACTCTTGTGACTCATCCTTTCCTGAGATCTGAGAACCAGAGGTTGTACAGAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000078438.5 |
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| CDS-3UTR GCA 90 bp | ATTCTTGATTGTAGATTGTCCAAATCTACAAACGGGGCATTGGCACAGAACTGGTATTCACAGAGAGTTTaGAGAGAGGACATTGGATCT | + |
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Preference number: 4 (lower is better) Translates to: ILDCRLSKSTNGALAQNWYSQRV*REDIGS Trigger: AGATCCAATGTCCTCTCTGCAAACTCTCTGTGAATA...CCAGTTCTGTGCCAATGCCCCGTTTGTAGATTTGGACAATCTACAATCAAGAAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078438.5 |
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| CDS-3UTR GCA 90 bp | ATTCTTGATTGTAGATTGTCCAAATCTACAAACGGGGCATTGGCACAGAACTGGTCCATGGATGATGATTaGAGCCTTATTTTCAAGGAT | + |
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Preference number: 4 (lower is better) Translates to: ILDCRLSKSTNGALAQNWSMDDD*SLIFKD Trigger: ATCCTTGAAAATAAGGCTGCAATCATCATCCATGGA...CCAGTTCTGTGCCAATGCCCCGTTTGTAGATTTGGACAATCTACAATCAAGAAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000078438.5 |
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| CDS CCA 90 bp | GGTCTGGGTCAGCTGAGGACTTGTCCAGGGTCACAGGGACTGAGGTaGGCAACACTGAATTATTCTTCTGTAACAGGCTCCAGCTCTCCT | + |
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Preference number: 5 (lower is better) Translates to: GLGQLRTCPGSQGLR*ATLNYSSVTGSSSP Trigger: AGGAGAGCTGGAGCCTGTTACAGAAGAATAATTCAGTGTTGCCCACCTCAGTCCCTGTGACCCTGGACAAGTCCTCAGCTGACCCAGACC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078438.5 |
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| CDS-3UTR CAA 90 bp | CATGTAGAGTGTCAGAGTAGGGCCACACTTCACTTCTACCATTTGTCTCATCCCTATTGTCTCAACTGCTaGGCTCCCTGCTGCTCCAGC | + |
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Preference number: 5 (lower is better) Translates to: HVECQSRATLHFYHLSHPYCLNC*APCCSS Trigger: GCTGGAGCAGCAGGGAGCCAAGCAGTTGAGACAATA...GGGATGAGACAAATGGTAGAAGTGAAGTGTGGCCCTACTCTGACACTCTACATG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078438.5 |
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| CDS-3UTR CAA 90 bp | ATTCTTGATTGTAGATTGTCCAAATCTACAAACGGGGCATTGGCACAGAACTGGGGGTCAGCTGAGGACTaGTCCAGGGTCACAGGGACT | + |
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Preference number: 5 (lower is better) Translates to: ILDCRLSKSTNGALAQNWGSAED*SRVTGT Trigger: AGTCCCTGTGACCCTGGACAAGTCCTCAGCTGACCC...CCAGTTCTGTGCCAATGCCCCGTTTGTAGATTTGGACAATCTACAATCAAGAAT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000078438.5 |
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| CDS TCA 90 bp | CAGCTACAATATACAAGGTCACTTTCTTTAGATCCTGAGAAAAGGTaGGGTCTGGGTCAGCTGAGGACTTGTCCAGGGTCACAGGGACTG | + |
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Preference number: 5 (lower is better) Translates to: QLQYTRSLSLDPEKR*GLGQLRTCPGSQGL Trigger: CAGTCCCTGTGACCCTGGACAAGTCCTCAGCTGACCCAGACCTCACCTTTTCTCAGGATCTAAAGAAAGTGACCTTGTATATTGTAGCTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078438.5 |
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| CDS-3UTR CAA 90 bp | CTTGATTGTAGATTGTCCAAATCTACAAACGGGGCATTGGCACAGAACTGGCCGTTATTCACAGAGAGTTaGCAGAGAGGACATTGGATC | + |
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Preference number: 5 (lower is better) Translates to: LDCRLSKSTNGALAQNWPLFTES*QRGHWI Trigger: GATCCAATGTCCTCTCTGCAAACTCTCTGTGAATAA...CGGCCAGTTCTGTGCCAATGCCCCGTTTGTAGATTTGGACAATCTACAATCAAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078438.5 |
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| CDS-3UTR CAA 90 bp | TGGCATGTAGAGTGTCAGAGTAGGGCCACACTTCACTTCTACCATTTGTCTCATTATTTTCTTGTCCTTTaGCCCCAAATCTTGGGCCTG | + |
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Preference number: 5 (lower is better) Translates to: WHVECQSRATLHFYHLSHYFLVL*PQILGL Trigger: CAGGCCCAAGATTTGGGGCAAAAGGACAAGAAAATA...ATGAGACAAATGGTAGAAGTGAAGTGTGGCCCTACTCTGACACTCTACATGCCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000078438.5 |
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| CDS-3UTR CAA 90 bp | ATTCTTGATTGTAGATTGTCCAAATCTACAAACGGGGCATTGGCACAGAACTGGTCCTGGGCTTTACAATaGGTGAATGGCTGGCATCCA | + |
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Preference number: 5 (lower is better) Translates to: ILDCRLSKSTNGALAQNWSWALQ*VNGWHP Trigger: TGGATGCCAGCCATTCACCAATTGTAAAGCCCAGGA...CCAGTTCTGTGCCAATGCCCCGTTTGTAGATTTGGACAATCTACAATCAAGAAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078438.5 |
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| CDS GCA 90 bp | CTTTTCTGCTTGGATGTCAGCAGGATCCATACTTTGGATCTTCTCTaGAAGACTAGCCAGCAGCTTATTGGGCCTGAACGTATTCTTATT | + |
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Preference number: 5 (lower is better) Translates to: LFCLDVSRIHTLDLL*KTSQQLIGPERILI Trigger: AATAAGAATACGTTCAGGCCCAATAAGCTGCTGGCTAGTCTTGCAGAGAAGATCCAAAGTATGGATCCTGCTGACATCCAAGCAGAAAAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078438.5 |
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| CDS-3UTR CAA 90 bp | CTTGATTGTAGATTGTCCAAATCTACAAACGGGGCATTGGCACAGAACTGGCCGGCATTCATATCGTCTTaGAGTTCTGTCAGGGTTTTT | + |
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Preference number: 5 (lower is better) Translates to: LDCRLSKSTNGALAQNWPAFISS*SSVRVF Trigger: AAAAACCCTGACAGAACTCAAAGACGATATGAATGC...CGGCCAGTTCTGTGCCAATGCCCCGTTTGTAGATTTGGACAATCTACAATCAAG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078438.5 |
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| CDS-3UTR CAA 90 bp | GGTTTTATTCTTGATTGTAGATTGTCCAAATCTACAAACGGGGCATTGGCACAGGGTTTTGCCTGCCTATaGGAAGCTTTTCCAGCTACA | + |
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Preference number: 5 (lower is better) Translates to: GFILDCRLSKSTNGALAQGFACL*EAFPAT Trigger: TGTAGCTGGAAAAGCTTCCAATAGGCAGGCAAAACC...CTGTGCCAATGCCCCGTTTGTAGATTTGGACAATCTACAATCAAGAATAAAACC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000078438.5 |
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| CDS-3UTR CAA 90 bp | GGTTTTATTCTTGATTGTAGATTGTCCAAATCTACAAACGGGGCATTGGCACAGTGTGCCTCTGACATCTaGAGTCTTCCTTTTCTGCTT | + |
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Preference number: 5 (lower is better) Translates to: GFILDCRLSKSTNGALAQCASDI*SLPFLL Trigger: AAGCAGAAAAGGAAGACTCAAGATGTCAGAGGCACA...CTGTGCCAATGCCCCGTTTGTAGATTTGGACAATCTACAATCAAGAATAAAACC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000078438.5 |
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| CDS TCA 72 bp | GACAGACCTGGAGGTACTCCTGGGCTTTACAATTGGTaGATGGCTGGCATCCAGAGGGCGAGATCCGCAGTG | + |
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Preference number: 6 (lower is better) Translates to: DRPGGTPGLYNW*MAGIQRARSAV Trigger: CACTGCGGATCTCGCCCTCTGGATGCCAGCCATTCACCAATTGTAAAGCCCAGGAGTACCTCCAGGTCTGTC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078438.5 |
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| CDS GCA 72 bp | GTCACAGTGACATATTGTCTCAACTGCTTGGCTCCCTaGTGCTCCAGCCAGTCCAGCCTGGACAGGAGGAAA | + |
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Preference number: 6 (lower is better) Translates to: VTVTYCLNCLAP*CSSQSSLDRRK Trigger: TTTCCTCCTGTCCAGGCTGGACTGGCTGGAGCAGCAGGGAGCCAAGCAGTTGAGACAATATGTCACTGTGAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078438.5 |
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| CDS GCA 72 bp | AGCTGCTTCTCTGTCACAGTGACATATTGTCTCAACTaGTTGGCTCCCTGCTGCTCCAGCCAGTCCAGCCTG | + |
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Preference number: 6 (lower is better) Translates to: SCFSVTVTYCLN*LAPCCSSQSSL Trigger: CAGGCTGGACTGGCTGGAGCAGCAGGGAGCCAAGCAGTTGAGACAATATGTCACTGTGACAGAGAAGCAGCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078438.5 |
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| CDS CAA 90 bp | GAGTTCAGCTGCTTCTCTGTCACAGTGACATATTGTCTCAACTGCTaGGCTCCCTGCTGCTCCAGCCAGTCCAGCCTGGACAGGAGGAAA | + |
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Preference number: 6 (lower is better) Translates to: EFSCFSVTVTYCLNC*APCCSSQSSLDRRK Trigger: TTTCCTCCTGTCCAGGCTGGACTGGCTGGAGCAGCAGGGAGCCAAGCAGTTGAGACAATATGTCACTGTGACAGAGAAGCAGCTGAACTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078438.5 |
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| CDS CAA 90 bp | CCCACTTTCTTAAGACAGACCTGGAGGTACTCCTGGGCTTTACAATaGGTGAATGGCTGGCATCCAGAGGGCGAGATCCGCAGTGCCCAT | + |
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Preference number: 6 (lower is better) Translates to: PTFLRQTWRYSWALQ*VNGWHPEGEIRSAH Trigger: ATGGGCACTGCGGATCTCGCCCTCTGGATGCCAGCCATTCACCAATTGTAAAGCCCAGGAGTACCTCCAGGTCTGTCTTAAGAAAGTGGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078438.5 |
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| CDS CAA 72 bp | TTAAGACAGACCTGGAGGTACTCCTGGGCTTTACAATaGGTGAATGGCTGGCATCCAGAGGGCGAGATCCGC | + |
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Preference number: 6 (lower is better) Translates to: LRQTWRYSWALQ*VNGWHPEGEIR Trigger: GCGGATCTCGCCCTCTGGATGCCAGCCATTCACCAATTGTAAAGCCCAGGAGTACCTCCAGGTCTGTCTTAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078438.5 |
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| CDS CCA 72 bp | CAGCTGAGGACTTGTCCAGGGTCACAGGGACTGAGGTaGGCAACACTGAATTATTCTTCTGTAACAGGCTCC | + |
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Preference number: 6 (lower is better) Translates to: QLRTCPGSQGLR*ATLNYSSVTGS Trigger: GGAGCCTGTTACAGAAGAATAATTCAGTGTTGCCCACCTCAGTCCCTGTGACCCTGGACAAGTCCTCAGCTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078438.5 |
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| CDS CCA 72 bp | AATTCCTCATGGATCTTTAGTTTCTCTAGATCCACCTaGGCCCTGAACGCCCAGATTGCCCCTTCACCTTGT | + |
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Preference number: 6 (lower is better) Translates to: NSSWIFSFSRST*ALNAQIAPSPC Trigger: ACAAGGTGAAGGGGCAATCTGGGCGTTCAGGGCCCAGGTGGATCTAGAGAAACTAAAGATCCATGAGGAATT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078438.5 |
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| CDS CCA 72 bp | TCATCTAGTCTCTGGCGCAGGAGCTTGAATTCCTCATaGATCTTTAGTTTCTCTAGATCCACCTGGGCCCTG | + |
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Preference number: 6 (lower is better) Translates to: SSSLWRRSLNSS*IFSFSRSTWAL Trigger: CAGGGCCCAGGTGGATCTAGAGAAACTAAAGATCCATGAGGAATTCAAGCTCCTGCGCCAGAGACTAGATGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078438.5 |
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| CDS CCA 72 bp | ACACCCACTTTCTTAAGACAGACCTGGAGGTACTCCTaGGCTTTACAATTGGTGAATGGCTGGCATCCAGAG | + |
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Preference number: 6 (lower is better) Translates to: TPTFLRQTWRYS*ALQLVNGWHPE Trigger: CTCTGGATGCCAGCCATTCACCAATTGTAAAGCCCAGGAGTACCTCCAGGTCTGTCTTAAGAAAGTGGGTGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078438.5 |
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| CDS GCA 72 bp | TTGGATGTCAGCAGGATCCATACTTTGGATCTTCTCTaGAAGACTAGCCAGCAGCTTATTGGGCCTGAACGT | + |
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Preference number: 6 (lower is better) Translates to: LDVSRIHTLDLL*KTSQQLIGPER Trigger: ACGTTCAGGCCCAATAAGCTGCTGGCTAGTCTTGCAGAGAAGATCCAAAGTATGGATCCTGCTGACATCCAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078438.5 |
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| CDS CCA 72 bp | CTGGACAGGAGGAAACTCTCTTCCTCATCTAGTCTCTaGCGCAGGAGCTTGAATTCCTCATGGATCTTTAGT | + |
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Preference number: 6 (lower is better) Translates to: LDRRKLSSSSSL*RRSLNSSWIFS Trigger: ACTAAAGATCCATGAGGAATTCAAGCTCCTGCGCCAGAGACTAGATGAGGAAGAGAGTTTCCTCCTGTCCAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078438.5 |
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| CDS TCA 72 bp | AGAGGACATTGGATCTTTTCTGACGTTTTTCCAACCTaGCTGATACACTGCAGGCAGAAGTTGTGCCCACAG | + |
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Preference number: 6 (lower is better) Translates to: RGHWIFSDVFPT*LIHCRQKLCPQ Trigger: CTGTGGGCACAACTTCTGCCTGCAGTGTATCAGTCAGGTTGGAAAAACGTCAGAAAAGATCCAATGTCCTCT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000078438.5 |
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| CDS CAA 72 bp | CCCTCACACAGTGGAAAGGGTAGAATGGTCGAGGTTTaGCCTGCCTATTGGAAGCTTTTCCAGCTACAATAT | + |
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Preference number: 6 (lower is better) Translates to: PSHSGKGRMVEV*PAYWKLFQLQY Trigger: ATATTGTAGCTGGAAAAGCTTCCAATAGGCAGGCAAAACCTCGACCATTCTACCCTTTCCACTGTGTGAGGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078438.5 |
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| CDS CAA 90 bp | CCTGCTCGCAGAAGTAATGTAGCTTTTCCTTGTGCCTCTGACATCTaGAGTCTTCCTTTTCTGCTTGGATGTCAGCAGGATCCATACTTT | + |
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Preference number: 6 (lower is better) Translates to: PARRSNVAFPCASDI*SLPFLLGCQQDPYF Trigger: AAAGTATGGATCCTGCTGACATCCAAGCAGAAAAGGAAGACTCAAGATGTCAGAGGCACAAGGAAAAGCTACATTACTTCTGCGAGCAGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000078438.5 |
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| CDS TCA 72 bp | CACAGAGAGTTTGCAGAGAGGACATTGGATCTTTTCTaGCGTTTTTCCAACCTGACTGATACACTGCAGGCA | + |
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Preference number: 6 (lower is better) Translates to: HREFAERTLDLF*RFSNLTDTLQA Trigger: TGCCTGCAGTGTATCAGTCAGGTTGGAAAAACGTCAGAAAAGATCCAATGTCCTCTCTGCAAACTCTCTGTG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000078438.5 |
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| CDS GCA 72 bp | CCTCACACAGTGGAAAGGGTAGAATGGTCGAGGTTTTaGCTGCCTATTGGAAGCTTTTCCAGCTACAATATA | + |
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Preference number: 6 (lower is better) Translates to: PHTVERVEWSRF*LPIGSFSSYNI Trigger: TATATTGTAGCTGGAAAAGCTTCCAATAGGCAGGCAAAACCTCGACCATTCTACCCTTTCCACTGTGTGAGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000078438.5 |
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| CDS CCA 72 bp | TCCTTTTCTGCTTGGATGTCAGCAGGATCCATACTTTaGATCTTCTCTGCAAGACTAGCCAGCAGCTTATTG | + |
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Preference number: 6 (lower is better) Translates to: SFSAWMSAGSIL*IFSARLASSLL Trigger: CAATAAGCTGCTGGCTAGTCTTGCAGAGAAGATCCAAAGTATGGATCCTGCTGACATCCAAGCAGAAAAGGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078438.5 |
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| CDS TCA 72 bp | AACTCTCTTCCTCATCTAGTCTCTGGCGCAGGAGCTTaGATTCCTCATGGATCTTTAGTTTCTCTAGATCCA | + |
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Preference number: 6 (lower is better) Translates to: NSLPHLVSGAGA*IPHGSLVSLDP Trigger: TGGATCTAGAGAAACTAAAGATCCATGAGGAATTCAAGCTCCTGCGCCAGAGACTAGATGAGGAAGAGAGTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078438.5 |
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| CDS CAA 72 bp | CTTTGGATCTTCTCTGCAAGACTAGCCAGCAGCTTATaGGGCCTGAACGTATTCTTATTCACAGAGAGTTTG | + |
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Preference number: 6 (lower is better) Translates to: LWIFSARLASSL*GLNVFLFTESL Trigger: CAAACTCTCTGTGAATAAGAATACGTTCAGGCCCAATAAGCTGCTGGCTAGTCTTGCAGAGAAGATCCAAAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078438.5 |
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| CDS CAA 72 bp | TTCCTTTTCTGCTTGGATGTCAGCAGGATCCATACTTaGGATCTTCTCTGCAAGACTAGCCAGCAGCTTATT | + |
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Preference number: 6 (lower is better) Translates to: FLFCLDVSRIHT*DLLCKTSQQLI Trigger: AATAAGCTGCTGGCTAGTCTTGCAGAGAAGATCCAAAGTATGGATCCTGCTGACATCCAAGCAGAAAAGGAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078438.5 |
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| CDS CAA 72 bp | AAACTCTCTTCCTCATCTAGTCTCTGGCGCAGGAGCTaGAATTCCTCATGGATCTTTAGTTTCTCTAGATCC | + |
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Preference number: 6 (lower is better) Translates to: KLSSSSSLWRRS*NSSWIFSFSRS Trigger: GGATCTAGAGAAACTAAAGATCCATGAGGAATTCAAGCTCCTGCGCCAGAGACTAGATGAGGAAGAGAGTTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078438.5 |
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| CDS CAA 72 bp | AGAAGTAATGTAGCTTTTCCTTGTGCCTCTGACATCTaGAGTCTTCCTTTTCTGCTTGGATGTCAGCAGGAT | + |
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Preference number: 6 (lower is better) Translates to: RSNVAFPCASDI*SLPFLLGCQQD Trigger: ATCCTGCTGACATCCAAGCAGAAAAGGAAGACTCAAGATGTCAGAGGCACAAGGAAAAGCTACATTACTTCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000078438.5 |
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| CDS CAA 72 bp | CTTTTATCTCTCTTCCCTTCGGCATTCATATCGTCTTaGAGTTCTGTCAGGGTTTTTATGATGGACTCATGC | + |
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Preference number: 6 (lower is better) Translates to: LLSLFPSAFISS*SSVRVFMMDSC Trigger: GCATGAGTCCATCATAAAAACCCTGACAGAACTCAAAGACGATATGAATGCCGAAGGGAAGAGAGATAAAAG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000078438.5 |
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