Pregenerated sensors for TRIM30C (Mus musculus)
Ensembl gene IDs: ENSMUSG00000078616Ensembl transcript IDs: ENSMUST00000106828.3
Found 16 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | ATGAGAGAGTACAAGCTTCCCGGTCCAGGAAAACTCCAACACGACTaGGAGGACCAGACAGAGAGAGGGCCAAAACACTGGAATTGTGGG | + |
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Preference number: 5 (lower is better) Translates to: MREYKLPGPGKLQHD*EDQTERGPKHWNCG Trigger: CCCACAATTCCAGTGTTTTGGCCCTCTCTCTGTCTGGTCCTCCCAGTCGTGTTGGAGTTTTCCTGGACCGGGAAGCTTGTACTCTCTCAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000106828.3 |
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| CDS TCA 90 bp | GCATTTCCATGGTTGAGAGCGCCAACTGATGTCCCACATCTGAGATaGGGTCTCTCACCAACTCTGTCTGCTCCCTTAGCTCATTTTCAG | + |
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Preference number: 5 (lower is better) Translates to: AFPWLRAPTDVPHLR*GLSPTLSAPLAHFQ Trigger: CTGAAAATGAGCTAAGGGAGCAGACAGAGTTGGTGAGAGACCTCATCTCAGATGTGGGACATCAGTTGGCGCTCTCAACCATGGAAATGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000106828.3 |
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| CDS CCA 90 bp | CGACTGGGAGGACCAGACAGAGAGAGGGCCAAAACACTGGAATTGTaGGTAACAGAACACTCATCAGAGGCATTGTATACAGACCAATTC | + |
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Preference number: 5 (lower is better) Translates to: RLGGPDRERAKTLEL*VTEHSSEALYTDQF Trigger: GAATTGGTCTGTATACAATGCCTCTGATGAGTGTTCTGTTACCCACAATTCCAGTGTTTTGGCCCTCTCTCTGTCTGGTCCTCCCAGTCG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000106828.3 |
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| CDS TCA 90 bp | ATAGAACCTATAGATGAGAGCTCCAAAGTTAGAAACATCATAAAATaGGAGAGTACAAGCTTCCCGGTCCAGGAAAACTCCAACACGACT | + |
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Preference number: 5 (lower is better) Translates to: IEPIDESSKVRNIIK*ESTSFPVQENSNTT Trigger: AGTCGTGTTGGAGTTTTCCTGGACCGGGAAGCTTGTACTCTCTCATTTTATGATGTTTCTAACTTTGGAGCTCTCATCTATAGGTTCTAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000106828.3 |
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| CDS CCA 72 bp | TACAAGCTTCCCGGTCCAGGAAAACTCCAACACGACTaGGAGGACCAGACAGAGAGAGGGCCAAAACACTGG | + |
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Preference number: 6 (lower is better) Translates to: YKLPGPGKLQHD*EDQTERGPKHW Trigger: CCAGTGTTTTGGCCCTCTCTCTGTCTGGTCCTCCCAGTCGTGTTGGAGTTTTCCTGGACCGGGAAGCTTGTA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000106828.3 |
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| CDS TCA 72 bp | TGGTTGAGAGCGCCAACTGATGTCCCACATCTGAGATaGGGTCTCTCACCAACTCTGTCTGCTCCCTTAGCT | + |
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Preference number: 6 (lower is better) Translates to: WLRAPTDVPHLR*GLSPTLSAPLA Trigger: AGCTAAGGGAGCAGACAGAGTTGGTGAGAGACCTCATCTCAGATGTGGGACATCAGTTGGCGCTCTCAACCA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106828.3 |
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| CDS TCA 72 bp | ATGCCCTGCAGCATTTCCATGGTTGAGAGCGCCAACTaGTGTCCCACATCTGAGATGAGGTCTCTCACCAAC | + |
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Preference number: 6 (lower is better) Translates to: MPCSISMVESAN*CPTSEMRSLTN Trigger: GTTGGTGAGAGACCTCATCTCAGATGTGGGACATCAGTTGGCGCTCTCAACCATGGAAATGCTGCAGGGCAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106828.3 |
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| CDS CAA 90 bp | ACACGACTGGGAGGACCAGACAGAGAGAGGGCCAAAACACTGGAATaGTGGGTAACAGAACACTCATCAGAGGCATTGTATACAGACCAA | + |
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Preference number: 6 (lower is better) Translates to: TRLGGPDRERAKTLE*WVTEHSSEALYTDQ Trigger: TTGGTCTGTATACAATGCCTCTGATGAGTGTTCTGTTACCCACAATTCCAGTGTTTTGGCCCTCTCTCTGTCTGGTCCTCCCAGTCGTGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000106828.3 |
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| CDS CAA 72 bp | GGAGGACCAGACAGAGAGAGGGCCAAAACACTGGAATaGTGGGTAACAGAACACTCATCAGAGGCATTGTAT | + |
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Preference number: 6 (lower is better) Translates to: GGPDRERAKTLE*WVTEHSSEALY Trigger: ATACAATGCCTCTGATGAGTGTTCTGTTACCCACAATTCCAGTGTTTTGGCCCTCTCTCTGTCTGGTCCTCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000106828.3 |
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| CDS CCA 72 bp | TTGTTAGAACAGAATTCATGCCCTGCAGCATTTCCATaGTTGAGAGCGCCAACTGATGTCCCACATCTGAGA | + |
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Preference number: 6 (lower is better) Translates to: LLEQNSCPAAFP*LRAPTDVPHLR Trigger: TCTCAGATGTGGGACATCAGTTGGCGCTCTCAACCATGGAAATGCTGCAGGGCATGAATTCTGTTCTAACAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106828.3 |
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| CDS CCA 72 bp | GGACCAGACAGAGAGAGGGCCAAAACACTGGAATTGTaGGTAACAGAACACTCATCAGAGGCATTGTATACA | + |
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Preference number: 6 (lower is better) Translates to: GPDRERAKTLEL*VTEHSSEALYT Trigger: TGTATACAATGCCTCTGATGAGTGTTCTGTTACCCACAATTCCAGTGTTTTGGCCCTCTCTCTGTCTGGTCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000106828.3 |
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| CDS CAA 72 bp | AAGCTCCATCTGAACATATTCCACATCACGCTGTATTaGATTCTCCCAGTCAGCTCTCTGTTGCTGAAGGTC | + |
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Preference number: 6 (lower is better) Translates to: KLHLNIFHITLY*ILPVSSLLLKV Trigger: GACCTTCAGCAACAGAGAGCTGACTGGGAGAATCAAATACAGCGTGATGTGGAATATGTTCAGATGGAGCTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106828.3 |
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| CDS CAA 72 bp | ATCACGCTGTATTTGATTCTCCCAGTCAGCTCTCTGTaGCTGAAGGTCATCCTGCCATTTATCACATCTTTT | + |
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Preference number: 6 (lower is better) Translates to: ITLYLILPVSSL*LKVILPFITSF Trigger: AAAAGATGTGATAAATGGCAGGATGACCTTCAGCAACAGAGAGCTGACTGGGAGAATCAAATACAGCGTGAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106828.3 |
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| CDS CAA 72 bp | CTGGAATTGTGGGTAACAGAACACTCATCAGAGGCATaGTATACAGACCAATTCTTCATCCCTATAACCCAG | + |
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Preference number: 6 (lower is better) Translates to: LELWVTEHSSEA*YTDQFFIPITQ Trigger: CTGGGTTATAGGGATGAAGAATTGGTCTGTATACAATGCCTCTGATGAGTGTTCTGTTACCCACAATTCCAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106828.3 |
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| CDS CAA 90 bp | GATAGACTTCAACTCTTTGATCCTTTTTACTATGTTGATCATGTTTaGATTAGGTCTCAGATTCTCAAACAGGTAACCAACCCGGCACAC | + |
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Preference number: 6 (lower is better) Translates to: DRLQLFDPFYYVDHV*IRSQILKQVTNPAH Trigger: GTGTGCCGGGTTGGTTACCTGTTTGAGAATCTGAGACCTAATCAAAACATGATCAACATAGTAAAAAGGATCAAAGAGTTGAAGTCTATC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000106828.3 |
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| CDS CCA 72 bp | ATGTTGTGCACAGTAAAACACTTTCTCCTTCTCCTCTaGGATAGACTTCAACTCTTTGATCCTTTTTACTAT | + |
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Preference number: 6 (lower is better) Translates to: MLCTVKHFLLLL*DRLQLFDPFYY Trigger: ATAGTAAAAAGGATCAAAGAGTTGAAGTCTATCCCAGAGGAGAAGGAGAAAGTGTTTTACTGTGCACAACAT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000106828.3 |
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