RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for TRIM26 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000024457

Ensembl transcript IDs: ENSMUST00000053434.15, ENSMUST00000123715.8, ENSMUST00000124136.2, ENSMUST00000130367.8, ENSMUST00000130801.8, ENSMUST00000144182.8, ENSMUST00000179968.8

Found 303 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp TCCGGGGCCGCAGCACCGGGAACAGCTGGGCCTCTGGGCTCGTGTTaGCCCAGATACCTGAGGGGGAGAGCCGAAGGGCCCACACACCAT +
Preference number: 1 (lower is better)
Translates to: SGAAAPGTAGPLGSC*PRYLRGRAEGPTHH
Trigger: ATGGTGTGTGGGCCCTTCGGCTCTCCCCCTCAGGTATCTGGGCCAACACGAGCCCAGAGGCCCAGCTGTTCCCGGTGCTGCGGCCCCGGA
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000124136.2
3UTR CCA 90 bp TCTCGAGACGCTGTGGTGACTCCGAGGCCACCAAGATCCAGTGTCTaGGAACAGTCTGTTCAAGAGCCAAGAGGAGCTAACACTTGCACG +
Preference number: 1 (lower is better)
Translates to: SRDAVVTPRPPRSSV*EQSVQEPRGANTCT
Trigger: CGTGCAAGTGTTAGCTCCTCTTGGCTCTTGAACAGACTGTTCCCAGACACTGGATCTTGGTGGCCTCGGAGTCACCACAGCGTCTCGAGA
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000053434.15
ENSMUST00000130367.8
ENSMUST00000179968.8
3UTR TCA 90 bp GCAGCATGTGATGCATACGAAGTGTTCAGTCTCGAGACGCTGTGGTaGCTCCGAGGCCACCAAGATCCAGTGTCTGGGAACAGTCTGTTC +
Preference number: 1 (lower is better)
Translates to: AACDAYEVFSLETLW*LRGHQDPVSGNSLF
Trigger: GAACAGACTGTTCCCAGACACTGGATCTTGGTGGCCTCGGAGTCACCACAGCGTCTCGAGACTGAACACTTCGTATGCATCACATGCTGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000053434.15
ENSMUST00000123715.8
ENSMUST00000130367.8
ENSMUST00000179968.8
3UTR CCA 90 bp GTGGCAATGGATGTGATGTCCCTCTCTCTCCTCCTCCTAGTGCTCTaGCCAGGAACCTTCCTCCATTATAGTTTTGGGATCCCAGAGAAG +
Preference number: 1 (lower is better)
Translates to: VAMDVMSLSLLLLVL*PGTFLHYSFGIPEK
Trigger: CTTCTCTGGGATCCCAAAACTATAATGGAGGAAGGTTCCTGGCCAGAGCACTAGGAGGAGGAGAGAGAGGGACATCACATCCATTGCCAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000053434.15
ENSMUST00000130367.8
ENSMUST00000179968.8
3UTR CCA 90 bp TGCTGCCAAGGCCCTGCTCAACAAAGAACACAGGGACAAGACAAATaGGTGTGTTCAGGAAAGAGGGAGTCATTTGGTCTTCAGAGCAGG +
Preference number: 1 (lower is better)
Translates to: CCQGPAQQRTQGQDK*VCSGKRESFGLQSR
Trigger: CCTGCTCTGAAGACCAAATGACTCCCTCTTTCCTGAACACACCCATTTGTCTTGTCCCTGTGTTCTTTGTTGAGCAGGGCCTTGGCAGCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000053434.15
ENSMUST00000130367.8
ENSMUST00000179968.8
3UTR CCA 90 bp AGCAAAAACAGCTTCAGATGTGATGGAAAGTCTACCTGTGGGCACTaGCTAACAACTGAACCAGAAAATGCTGCTGCCAAGGCCCTGCTC +
Preference number: 1 (lower is better)
Translates to: SKNSFRCDGKSTCGH*LTTEPENAAAKALL
Trigger: GAGCAGGGCCTTGGCAGCAGCATTTTCTGGTTCAGTTGTTAGCCAGTGCCCACAGGTAGACTTTCCATCACATCTGAAGCTGTTTTTGCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000053434.15
ENSMUST00000130367.8
ENSMUST00000179968.8
3UTR GCA 90 bp AGTGTCTGGGAACAGTCTGTTCAAGAGCCAAGAGGAGCTAACACTTaGACGGGCAGAAGAAATCTGGAATGTTTAAGGATAAAAAGGGGG +
Preference number: 1 (lower is better)
Translates to: SVWEQSVQEPRGANT*TGRRNLECLRIKRG
Trigger: CCCCCTTTTTATCCTTAAACATTCCAGATTTCTTCTGCCCGTGCAAGTGTTAGCTCCTCTTGGCTCTTGAACAGACTGTTCCCAGACACT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000053434.15
ENSMUST00000130367.8
ENSMUST00000179968.8
3UTR TCA 90 bp GTCATTTGGTCTTCAGAGCAGGAAACCTCAGAGGAAATGAGAAGCTaGGTAAGATATATGGATAGGGTGACAGTGTTGAGAGACTTTGGC +
Preference number: 1 (lower is better)
Translates to: VIWSSEQETSEEMRS*VRYMDRVTVLRDFG
Trigger: GCCAAAGTCTCTCAACACTGTCACCCTATCCATATATCTTACTCAGCTTCTCATTTCCTCTGAGGTTTCCTGCTCTGAAGACCAAATGAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000053434.15
ENSMUST00000130367.8
ENSMUST00000179968.8
3UTR TCA 90 bp CTCCAGGACACAAACTTACACGGCCTTGGAAACTTCTGTGGGTCATaGCTACATCCATTCTTGCATCTTTGCATATTTAACTCTTGTGGG +
Preference number: 1 (lower is better)
Translates to: LQDTNLHGLGNFCGS*LHPFLHLCIFNSCG
Trigger: CCCACAAGAGTTAAATATGCAAAGATGCAAGAATGGATGTAGTCATGACCCACAGAAGTTTCCAAGGCCGTGTAAGTTTGTGTCCTGGAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000053434.15
ENSMUST00000130367.8
ENSMUST00000179968.8
3UTR CAA 90 bp CTCCGGGGCCGCAGCACCGGGAACAGCTGGGCCTCTGGGCTCGTGTaGGCCCAGATACCTGAGGGGGAGAGCCGAAGGGCCCACACACCA +
Preference number: 2 (lower is better)
Translates to: LRGRSTGNSWASGLV*AQIPEGESRRAHTP
Trigger: TGGTGTGTGGGCCCTTCGGCTCTCCCCCTCAGGTATCTGGGCCAACACGAGCCCAGAGGCCCAGCTGTTCCCGGTGCTGCGGCCCCGGAG
70% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000124136.2
3UTR-3UTR CCA 90 bp GGCCGCAGCACCGGGAACAGCTGGGCCTCTGGGCTCGTGTTGGCCCAGATACCTCCACACACCATCTTCTaGTCGCAGGGAGAGGTCCCC +
Preference number: 2 (lower is better)
Translates to: GRSTGNSWASGLVLAQIPPHTIF*SQGEVP
Trigger: GGGGACCTCTCCCTGCGACCAGAAGATGGTGTGTGG...AGGTATCTGGGCCAACACGAGCCCAGAGGCCCAGCTGTTCCCGGTGCTGCGGCC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000124136.2
3UTR-3UTR TCA 90 bp GTGATGCATACGAAGTGTTCAGTCTCGAGACGCTGTGGTGACTCCGAGGCCACCGGGTGGCAATGGATGTaGTGTCCCTCTCTCTCCTCC +
Preference number: 2 (lower is better)
Translates to: VMHTKCSVSRRCGDSEATGWQWM*CPSLSS
Trigger: GGAGGAGAGAGAGGGACATCACATCCATTGCCACCC...GGTGGCCTCGGAGTCACCACAGCGTCTCGAGACTGAACACTTCGTATGCATCAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000053434.15
ENSMUST00000130367.8
ENSMUST00000179968.8
3UTR-3UTR CCA 90 bp CATGTGATGCATACGAAGTGTTCAGTCTCGAGACGCTGTGGTGACTCCGAGGCCCTTTGGCCGTGGCAGTaGGGAGATGGGTGGCAATGG +
Preference number: 2 (lower is better)
Translates to: HVMHTKCSVSRRCGDSEALWPWQ*GDGWQW
Trigger: CCATTGCCACCCATCTCCCCACTGCCACGGCCAAAG...GGCCTCGGAGTCACCACAGCGTCTCGAGACTGAACACTTCGTATGCATCACATG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000053434.15
ENSMUST00000130367.8
ENSMUST00000179968.8
3UTR-3UTR CCA 90 bp CGAGGCCACCAAGATCCAGTGTCTGGGAACAGTCTGTTCAAGAGCCAAGAGGAGGAGAGACTTTGGCCGTaGCAGTGGGGAGATGGGTGG +
Preference number: 2 (lower is better)
Translates to: RGHQDPVSGNSLFKSQEEERLWP*QWGDGW
Trigger: CCACCCATCTCCCCACTGCCACGGCCAAAGTCTCTC...CTCCTCTTGGCTCTTGAACAGACTGTTCCCAGACACTGGATCTTGGTGGCCTCG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000053434.15
ENSMUST00000130367.8
ENSMUST00000179968.8
3UTR-3UTR TCA 90 bp CATGTGATGCATACGAAGTGTTCAGTCTCGAGACGCTGTGGTGACTCCGAGGCCGGGTGGCAATGGATGTaGTGTCCCTCTCTCTCCTCC +
Preference number: 2 (lower is better)
Translates to: HVMHTKCSVSRRCGDSEAGWQWM*CPSLSS
Trigger: GGAGGAGAGAGAGGGACATCACATCCATTGCCACCC...GGCCTCGGAGTCACCACAGCGTCTCGAGACTGAACACTTCGTATGCATCACATG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000053434.15
ENSMUST00000130367.8
ENSMUST00000179968.8
3UTR-3UTR CCA 90 bp GTGATGCATACGAAGTGTTCAGTCTCGAGACGCTGTGGTGACTCCGAGGCCACCTCTCTAGATTCCTCATaGCCCTCTCTCCCCTTCCCC +
Preference number: 2 (lower is better)
Translates to: VMHTKCSVSRRCGDSEATSLDSS*PSLPFP
Trigger: GGGGAAGGGGAGAGAGGGCCATGAGGAATCTAGAGA...GGTGGCCTCGGAGTCACCACAGCGTCTCGAGACTGAACACTTCGTATGCATCAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000053434.15
ENSMUST00000130367.8
ENSMUST00000179968.8
3UTR-3UTR TCA 90 bp GTGATGCATACGAAGTGTTCAGTCTCGAGACGCTGTGGTGACTCCGAGGCCACCTACCTAGATGCTTTCTaGAACACAGATGTCCCTGGG +
Preference number: 2 (lower is better)
Translates to: VMHTKCSVSRRCGDSEATYLDAF*NTDVPG
Trigger: CCCAGGGACATCTGTGTTTCAGAAAGCATCTAGGTA...GGTGGCCTCGGAGTCACCACAGCGTCTCGAGACTGAACACTTCGTATGCATCAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000053434.15
ENSMUST00000130367.8
ENSMUST00000179968.8
3UTR-3UTR CCA 90 bp GTGTCTGGGAACAGTCTGTTCAAGAGCCAAGAGGAGCTAACACTTGCACGGGCAGCAACAGAGTGGTTTTaGGCACGGGGTACCTCAACT +
Preference number: 2 (lower is better)
Translates to: VSGNSLFKSQEELTLARAATEWF*ARGTST
Trigger: AGTTGAGGTACCCCGTGCCCAAAACCACTCTGTTGC...TGCCCGTGCAAGTGTTAGCTCCTCTTGGCTCTTGAACAGACTGTTCCCAGACAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000053434.15
ENSMUST00000130367.8
ENSMUST00000179968.8
3UTR-3UTR TCA 90 bp AGAACACAGGGACAAGACAAATGGGTGTGTTCAGGAAAGAGGGAGTCATTTGGTGGGTGGCAATGGATGTaGTGTCCCTCTCTCTCCTCC +
Preference number: 2 (lower is better)
Translates to: RTQGQDKWVCSGKRESFGGWQWM*CPSLSS
Trigger: GGAGGAGAGAGAGGGACATCACATCCATTGCCACCC...ACCAAATGACTCCCTCTTTCCTGAACACACCCATTTGTCTTGTCCCTGTGTTCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000053434.15
ENSMUST00000130367.8
ENSMUST00000179968.8
3UTR-3UTR TCA 90 bp GTGTCTGGGAACAGTCTGTTCAAGAGCCAAGAGGAGCTAACACTTGCACGGGCATACCTAGATGCTTTCTaGAACACAGATGTCCCTGGG +
Preference number: 2 (lower is better)
Translates to: VSGNSLFKSQEELTLARAYLDAF*NTDVPG
Trigger: CCCAGGGACATCTGTGTTTCAGAAAGCATCTAGGTA...TGCCCGTGCAAGTGTTAGCTCCTCTTGGCTCTTGAACAGACTGTTCCCAGACAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000053434.15
ENSMUST00000130367.8
ENSMUST00000179968.8
3UTR-3UTR CCA 90 bp CGAGGCCACCAAGATCCAGTGTCTGGGAACAGTCTGTTCAAGAGCCAAGAGGAGAAAGAGGGAGTCATTTaGTCTTCAGAGCAGGAAACC +
Preference number: 2 (lower is better)
Translates to: RGHQDPVSGNSLFKSQEEKEGVI*SSEQET
Trigger: GGTTTCCTGCTCTGAAGACCAAATGACTCCCTCTTT...CTCCTCTTGGCTCTTGAACAGACTGTTCCCAGACACTGGATCTTGGTGGCCTCG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000053434.15
ENSMUST00000130367.8
ENSMUST00000179968.8
3UTR CAA 90 bp GAAACACAGATGTCCCTGGGGAGTCCTACCTACTCAGGTCTGGGTTaGAGGCTAGAAACTTTGGTACTCACGCTAGGAGATGATTCTACC +
Preference number: 2 (lower is better)
Translates to: ETQMSLGSPTYSGLG*RLETLVLTLGDDST
Trigger: GGTAGAATCATCTCCTAGCGTGAGTACCAAAGTTTCTAGCCTCAAACCCAGACCTGAGTAGGTAGGACTCCCCAGGGACATCTGTGTTTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000053434.15
ENSMUST00000130367.8
ENSMUST00000179968.8
3UTR-3UTR TCA 90 bp CGAGGCCACCAAGATCCAGTGTCTGGGAACAGTCTGTTCAAGAGCCAAGAGGAGATCACAGTCACTATCTaGGTCATAGTACCTAGATGC +
Preference number: 2 (lower is better)
Translates to: RGHQDPVSGNSLFKSQEEITVTI*VIVPRC
Trigger: GCATCTAGGTACTATGACTCAGATAGTGACTGTGAT...CTCCTCTTGGCTCTTGAACAGACTGTTCCCAGACACTGGATCTTGGTGGCCTCG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000053434.15
ENSMUST00000130367.8
ENSMUST00000179968.8
3UTR-3UTR TCA 90 bp GTGTCTGGGAACAGTCTGTTCAAGAGCCAAGAGGAGCTAACACTTGCACGGGCACATCTCCTAGGAAAGTaGATCTGGACACTCCATAGT +
Preference number: 2 (lower is better)
Translates to: VSGNSLFKSQEELTLARAHLLGK*IWTLHS
Trigger: ACTATGGAGTGTCCAGATTCACTTTCCTAGGAGATG...TGCCCGTGCAAGTGTTAGCTCCTCTTGGCTCTTGAACAGACTGTTCCCAGACAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000053434.15
ENSMUST00000130367.8
ENSMUST00000179968.8
3UTR-3UTR CCA 90 bp GCCAAGGCCCTGCTCAACAAAGAACACAGGGACAAGACAAATGGGTGTGTTCAGGAAGGGAAGTTTCCATaGGTGTGGGATCCAGGTAAT +
Preference number: 2 (lower is better)
Translates to: AKALLNKEHRDKTNGCVQEGKFP*VWDPGN
Trigger: ATTACCTGGATCCCACACCCATGGAAACTTCCCTTC...CTGAACACACCCATTTGTCTTGTCCCTGTGTTCTTTGTTGAGCAGGGCCTTGGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000053434.15
ENSMUST00000130367.8
ENSMUST00000179968.8
3UTR CAA 90 bp CACAGGGACAAGACAAATGGGTGTGTTCAGGAAAGAGGGAGTCATTaGGTCTTCAGAGCAGGAAACCTCAGAGGAAATGAGAAGCTGAGT +
Preference number: 2 (lower is better)
Translates to: HRDKTNGCVQERGSH*VFRAGNLRGNEKLS
Trigger: ACTCAGCTTCTCATTTCCTCTGAGGTTTCCTGCTCTGAAGACCAAATGACTCCCTCTTTCCTGAACACACCCATTTGTCTTGTCCCTGTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000053434.15
ENSMUST00000130367.8
ENSMUST00000179968.8
3UTR-3UTR GCA 90 bp CGAGGCCACCAAGATCCAGTGTCTGGGAACAGTCTGTTCAAGAGCCAAGAGGAGCCATTCTTGCATCTTTaGATATTTAACTCTTGTGGG +
Preference number: 2 (lower is better)
Translates to: RGHQDPVSGNSLFKSQEEPFLHL*IFNSCG
Trigger: CCCACAAGAGTTAAATATGCAAAGATGCAAGAATGG...CTCCTCTTGGCTCTTGAACAGACTGTTCCCAGACACTGGATCTTGGTGGCCTCG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000053434.15
ENSMUST00000130367.8
ENSMUST00000179968.8
3UTR-3UTR GCA 90 bp CATGTGATGCATACGAAGTGTTCAGTCTCGAGACGCTGTGGTGACTCCGAGGCCGTCATAGTACCTAGATaGTTTCTGAAACACAGATGT +
Preference number: 2 (lower is better)
Translates to: HVMHTKCSVSRRCGDSEAVIVPR*FLKHRC
Trigger: ACATCTGTGTTTCAGAAAGCATCTAGGTACTATGAC...GGCCTCGGAGTCACCACAGCGTCTCGAGACTGAACACTTCGTATGCATCACATG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000053434.15
ENSMUST00000130367.8
ENSMUST00000179968.8
3UTR-3UTR CCA 90 bp AATGGGTGTGTTCAGGAAAGAGGGAGTCATTTGGTCTTCAGAGCAGGAAACCTCGAAGGGAAGTTTCCATaGGTGTGGGATCCAGGTAAT +
Preference number: 2 (lower is better)
Translates to: NGCVQERGSHLVFRAGNLEGKFP*VWDPGN
Trigger: ATTACCTGGATCCCACACCCATGGAAACTTCCCTTC...GAGGTTTCCTGCTCTGAAGACCAAATGACTCCCTCTTTCCTGAACACACCCATT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000053434.15
ENSMUST00000130367.8
ENSMUST00000179968.8
3UTR-3UTR GCA 90 bp GTGTCTGGGAACAGTCTGTTCAAGAGCCAAGAGGAGCTAACACTTGCACGGGCACCATTCTTGCATCTTTaGATATTTAACTCTTGTGGG +
Preference number: 2 (lower is better)
Translates to: VSGNSLFKSQEELTLARAPFLHL*IFNSCG
Trigger: CCCACAAGAGTTAAATATGCAAAGATGCAAGAATGG...TGCCCGTGCAAGTGTTAGCTCCTCTTGGCTCTTGAACAGACTGTTCCCAGACAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000053434.15
ENSMUST00000130367.8
ENSMUST00000179968.8
3UTR-3UTR CCA 90 bp CACCAAGATCCAGTGTCTGGGAACAGTCTGTTCAAGAGCCAAGAGGAGCTAACACCTTGGAAACTTCTGTaGGTCATGACTACATCCATT +
Preference number: 2 (lower is better)
Translates to: HQDPVSGNSLFKSQEELTPWKLL*VMTTSI
Trigger: AATGGATGTAGTCATGACCCACAGAAGTTTCCAAGG...TGTTAGCTCCTCTTGGCTCTTGAACAGACTGTTCCCAGACACTGGATCTTGGTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000053434.15
ENSMUST00000130367.8
ENSMUST00000179968.8
3UTR-3UTR CCA 90 bp GGAACCTTCCTCCATTATAGTTTTGGGATCCCAGAGAAGGGAAGTTTCCATGGGTTCATCTCAGAGTCCTaGACTCTCAGAGAAGTAAAG +
Preference number: 2 (lower is better)
Translates to: GTFLHYSFGIPEKGSFHGFISES*TLREVK
Trigger: CTTTACTTCTCTGAGAGTCCAGGACTCTGAGATGAA...CCCATGGAAACTTCCCTTCTCTGGGATCCCAAAACTATAATGGAGGAAGGTTCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000053434.15
ENSMUST00000130367.8
ENSMUST00000179968.8
3UTR CCA 72 bp ATGCCCACTCTCCGGGGCCGCAGCACCGGGAACAGCTaGGCCTCTGGGCTCGTGTTGGCCCAGATACCTGAG +
Preference number: 3 (lower is better)
Translates to: MPTLRGRSTGNS*ASGLVLAQIPE
Trigger: CTCAGGTATCTGGGCCAACACGAGCCCAGAGGCCCAGCTGTTCCCGGTGCTGCGGCCCCGGAGAGTGGGCAT
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000124136.2
3UTR CCA 72 bp GCTGTGGTGACTCCGAGGCCACCAAGATCCAGTGTCTaGGAACAGTCTGTTCAAGAGCCAAGAGGAGCTAAC +
Preference number: 3 (lower is better)
Translates to: AVVTPRPPRSSV*EQSVQEPRGAN
Trigger: GTTAGCTCCTCTTGGCTCTTGAACAGACTGTTCCCAGACACTGGATCTTGGTGGCCTCGGAGTCACCACAGC
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000053434.15
ENSMUST00000130367.8
ENSMUST00000179968.8
3UTR-3UTR CAA 90 bp GTGATGCATACGAAGTGTTCAGTCTCGAGACGCTGTGGTGACTCCGAGGCCACCCAAACTTACACGGCCTaGGAAACTTCTGTGGGTCAT +
Preference number: 3 (lower is better)
Translates to: VMHTKCSVSRRCGDSEATQTYTA*ETSVGH
Trigger: ATGACCCACAGAAGTTTCCAAGGCCGTGTAAGTTTG...GGTGGCCTCGGAGTCACCACAGCGTCTCGAGACTGAACACTTCGTATGCATCAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000053434.15
ENSMUST00000130367.8
ENSMUST00000179968.8
3UTR-3UTR CAA 90 bp GTGATGCATACGAAGTGTTCAGTCTCGAGACGCTGTGGTGACTCCGAGGCCACCTCCTCCATTATAGTTTaGGGATCCCAGAGAAGGGAA +
Preference number: 3 (lower is better)
Translates to: VMHTKCSVSRRCGDSEATSSIIV*GSQRRE
Trigger: TTCCCTTCTCTGGGATCCCAAAACTATAATGGAGGA...GGTGGCCTCGGAGTCACCACAGCGTCTCGAGACTGAACACTTCGTATGCATCAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000053434.15
ENSMUST00000130367.8
ENSMUST00000179968.8
3UTR-3UTR CAA 90 bp GCCAAGGCCCTGCTCAACAAAGAACACAGGGACAAGACAAATGGGTGTGTTCAGTCCTCCATTATAGTTTaGGGATCCCAGAGAAGGGAA +
Preference number: 3 (lower is better)
Translates to: AKALLNKEHRDKTNGCVQSSIIV*GSQRRE
Trigger: TTCCCTTCTCTGGGATCCCAAAACTATAATGGAGGA...CTGAACACACCCATTTGTCTTGTCCCTGTGTTCTTTGTTGAGCAGGGCCTTGGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000053434.15
ENSMUST00000130367.8
ENSMUST00000179968.8
3UTR TCA 72 bp CCTCAACTTCGAGGACAGCAAAAACAGCTTCAGATGTaGTGGAAAGTCTACCTGTGGGCACTGGCTAACAAC +
Preference number: 3 (lower is better)
Translates to: PQLRGQQKQLQM*WKVYLWALANN
Trigger: GTTGTTAGCCAGTGCCCACAGGTAGACTTTCCATCACATCTGAAGCTGTTTTTGCTGTCCTCGAAGTTGAGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000053434.15
ENSMUST00000130367.8
ENSMUST00000179968.8
3UTR CCA 72 bp AGCTTCAGATGTGATGGAAAGTCTACCTGTGGGCACTaGCTAACAACTGAACCAGAAAATGCTGCTGCCAAG +
Preference number: 3 (lower is better)
Translates to: SFRCDGKSTCGH*LTTEPENAAAK
Trigger: CTTGGCAGCAGCATTTTCTGGTTCAGTTGTTAGCCAGTGCCCACAGGTAGACTTTCCATCACATCTGAAGCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000053434.15
ENSMUST00000130367.8
ENSMUST00000179968.8
3UTR-3UTR CAA 90 bp CACCAAGATCCAGTGTCTGGGAACAGTCTGTTCAAGAGCCAAGAGGAGCTAACATCCTCCATTATAGTTTaGGGATCCCAGAGAAGGGAA +
Preference number: 3 (lower is better)
Translates to: HQDPVSGNSLFKSQEELTSSIIV*GSQRRE
Trigger: TTCCCTTCTCTGGGATCCCAAAACTATAATGGAGGA...TGTTAGCTCCTCTTGGCTCTTGAACAGACTGTTCCCAGACACTGGATCTTGGTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000053434.15
ENSMUST00000130367.8
ENSMUST00000179968.8
3UTR CCA 72 bp TTTTGGGATCCCAGAGAAGGGAAGTTTCCATGGGTGTaGGATCCAGGTAATCTTTCTTCATCTCAGAGTCCT +
Preference number: 3 (lower is better)
Translates to: FWDPREGKFPWV*DPGNLSSSQSP
Trigger: AGGACTCTGAGATGAAGAAAGATTACCTGGATCCCACACCCATGGAAACTTCCCTTCTCTGGGATCCCAAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000053434.15
ENSMUST00000130367.8
ENSMUST00000179968.8
3UTR CCA 72 bp AGACAAATGGGTGTGTTCAGGAAAGAGGGAGTCATTTaGTCTTCAGAGCAGGAAACCTCAGAGGAAATGAGA +
Preference number: 3 (lower is better)
Translates to: RQMGVFRKEGVI*SSEQETSEEMR
Trigger: TCTCATTTCCTCTGAGGTTTCCTGCTCTGAAGACCAAATGACTCCCTCTTTCCTGAACACACCCATTTGTCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000053434.15
ENSMUST00000130367.8
ENSMUST00000179968.8
3UTR CCA 72 bp CCAGGACACAAACTTACACGGCCTTGGAAACTTCTGTaGGTCATGACTACATCCATTCTTGCATCTTTGCAT +
Preference number: 3 (lower is better)
Translates to: PGHKLTRPWKLL*VMTTSILASLH
Trigger: ATGCAAAGATGCAAGAATGGATGTAGTCATGACCCACAGAAGTTTCCAAGGCCGTGTAAGTTTGTGTCCTGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000053434.15
ENSMUST00000130367.8
ENSMUST00000179968.8
3UTR GCA 72 bp GAACAGTCTGTTCAAGAGCCAAGAGGAGCTAACACTTaGACGGGCAGAAGAAATCTGGAATGTTTAAGGATA +
Preference number: 3 (lower is better)
Translates to: EQSVQEPRGANT*TGRRNLECLRI
Trigger: TATCCTTAAACATTCCAGATTTCTTCTGCCCGTGCAAGTGTTAGCTCCTCTTGGCTCTTGAACAGACTGTTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000053434.15
ENSMUST00000130367.8
ENSMUST00000179968.8
3UTR TCA 72 bp ACAAACTTACACGGCCTTGGAAACTTCTGTGGGTCATaGCTACATCCATTCTTGCATCTTTGCATATTTAAC +
Preference number: 3 (lower is better)
Translates to: TNLHGLGNFCGS*LHPFLHLCIFN
Trigger: GTTAAATATGCAAAGATGCAAGAATGGATGTAGTCATGACCCACAGAAGTTTCCAAGGCCGTGTAAGTTTGT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000053434.15
ENSMUST00000130367.8
ENSMUST00000179968.8
3UTR TCA 72 bp CTCTGCAGAGGTAATTTATTGATCACAGTCACTATCTaGGTCATAGTACCTAGATGCTTTCTGAAACACAGA +
Preference number: 3 (lower is better)
Translates to: LCRGNLLITVTI*VIVPRCFLKHR
Trigger: TCTGTGTTTCAGAAAGCATCTAGGTACTATGACTCAGATAGTGACTGTGATCAATAAATTACCTCTGCAGAG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000053434.15
ENSMUST00000130367.8
ENSMUST00000179968.8
CDS-3UTR GCA 90 bp CACTCTCCGGGGCCGCAGCACCGGGAACAGCTGGGCCTCTGGGCTCGTGTTGGCTGCAGCTGGCTGTCGTaGCTTGCCCTCCAGCTCGGA +
Preference number: 4 (lower is better)
Translates to: HSPGPQHREQLGLWARVGCSWLS*LALQLG
Trigger: TCCGAGCTGGAGGGCAAGGCACGACAGCCAGCTGCA...GCCAACACGAGCCCAGAGGCCCAGCTGTTCCCGGTGCTGCGGCCCCGGAGAGTG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000124136.2
CDS-3UTR CCA 90 bp CGATGCCCACTCTCCGGGGCCGCAGCACCGGGAACAGCTGGGCCTCTGGGCTCGTCCACTGGCCGACTGTaGGTCCAGGGTGACGCTTAC +
Preference number: 4 (lower is better)
Translates to: RCPLSGAAAPGTAGPLGSSTGRL*VQGDAY
Trigger: GTAAGCGTCACCCTGGACCCACAGTCGGCCAGTGGA...CGAGCCCAGAGGCCCAGCTGTTCCCGGTGCTGCGGCCCCGGAGAGTGGGCATCG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000124136.2
3UTR CAA 72 bp CGCAGCACCGGGAACAGCTGGGCCTCTGGGCTCGTGTaGGCCCAGATACCTGAGGGGGAGAGCCGAAGGGCC +
Preference number: 4 (lower is better)
Translates to: RSTGNSWASGLV*AQIPEGESRRA
Trigger: GGCCCTTCGGCTCTCCCCCTCAGGTATCTGGGCCAACACGAGCCCAGAGGCCCAGCTGTTCCCGGTGCTGCG
69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000124136.2
CDS-3UTR TCA 90 bp CTCCGGGGCCGCAGCACCGGGAACAGCTGGGCCTCTGGGCTCGTGTTGGCCCAGTCCTCTTTCCCCATGTaGAGCCCTTGCTGCCCAACA +
Preference number: 4 (lower is better)
Translates to: LRGRSTGNSWASGLVLAQSSFPM*SPCCPT
Trigger: TGTTGGGCAGCAAGGGCTTCACATGGGGAAAGAGGA...CTGGGCCAACACGAGCCCAGAGGCCCAGCTGTTCCCGGTGCTGCGGCCCCGGAG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000124136.2
CDS-3UTR GCA 90 bp GCACCGGGAACAGCTGGGCCTCTGGGCTCGTGTTGGCCCAGATACCTGAGGGGGAGCTTGCCCTGGAACTaGCTCAGGCCTCGCTGCAGA +
Preference number: 4 (lower is better)
Translates to: APGTAGPLGSCWPRYLRGSLPWN*LRPRCR
Trigger: TCTGCAGCGAGGCCTGAGGCAGTTCCAGGGCAAGCT...CCCCCTCAGGTATCTGGGCCAACACGAGCCCAGAGGCCCAGCTGTTCCCGGTGC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000124136.2
CDS-3UTR GCA 90 bp GATGCCCACTCTCCGGGGCCGCAGCACCGGGAACAGCTGGGCCTCTGGGCTCGTAAGTCCTTGGTGTCCTaGATCAGCTCTGCAGCTGGC +
Preference number: 4 (lower is better)
Translates to: DAHSPGPQHREQLGLWARKSLVS*ISSAAG
Trigger: GCCAGCTGCAGAGCTGATGCAGGACACCAAGGACTT...ACGAGCCCAGAGGCCCAGCTGTTCCCGGTGCTGCGGCCCCGGAGAGTGGGCATC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000124136.2
CDS-3UTR CCA 90 bp CGATGCCCACTCTCCGGGGCCGCAGCACCGGGAACAGCTGGGCCTCTGGGCTCGTCACAGTCAAACTGCTaGGGGAGCAGACAGTCACTC +
Preference number: 4 (lower is better)
Translates to: RCPLSGAAAPGTAGPLGSSQSNC*GSRQSL
Trigger: GAGTGACTGTCTGCTCCCCCAGCAGTTTGACTGTGA...CGAGCCCAGAGGCCCAGCTGTTCCCGGTGCTGCGGCCCCGGAGAGTGGGCATCG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000124136.2
CDS-3UTR TCA 90 bp GGCGATGCCCACTCTCCGGGGCCGCAGCACCGGGAACAGCTGGGCCTCTGGGCTACTGTGGGTCCAGGGTaGCGCTTACTGTCTTATACT +
Preference number: 4 (lower is better)
Translates to: GDAHSPGPQHREQLGLWATVGPG*RLLSYT
Trigger: AGTATAAGACAGTAAGCGTCACCCTGGACCCACAGT...AGCCCAGAGGCCCAGCTGTTCCCGGTGCTGCGGCCCCGGAGAGTGGGCATCGCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000124136.2
CDS-3UTR GCA 90 bp CGATGCCCACTCTCCGGGGCCGCAGCACCGGGAACAGCTGGGCCTCTGGGCTCGTGGCCACTCCCACCATaGAGCTTTCCTGAACTTCTT +
Preference number: 4 (lower is better)
Translates to: RCPLSGAAAPGTAGPLGSWPLPP*SFPELL
Trigger: AAGAAGTTCAGGAAAGCTGCATGGTGGGAGTGGCCA...CGAGCCCAGAGGCCCAGCTGTTCCCGGTGCTGCGGCCCCGGAGAGTGGGCATCG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000124136.2
CDS-3UTR CCA 90 bp AGCACCGGGAACAGCTGGGCCTCTGGGCTCGTGTTGGCCCAGATACCTGAGGGGCATCAGCTCTGCAGCTaGCTGTCGTGCCTTGCCCTC +
Preference number: 4 (lower is better)
Translates to: STGNSWASGLVLAQIPEGHQLCS*LSCLAL
Trigger: GAGGGCAAGGCACGACAGCCAGCTGCAGAGCTGATG...CCCCTCAGGTATCTGGGCCAACACGAGCCCAGAGGCCCAGCTGTTCCCGGTGCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000124136.2
CDS-3UTR CCA 90 bp GGCGATGCCCACTCTCCGGGGCCGCAGCACCGGGAACAGCTGGGCCTCTGGGCTCCAGAACTTCTTCCGTaGGTACTTGTTGGCGAAGTC +
Preference number: 4 (lower is better)
Translates to: GDAHSPGPQHREQLGLWAPELLP*VLVGEV
Trigger: GACTTCGCCAACAAGTACCCACGGAAGAAGTTCTGG...AGCCCAGAGGCCCAGCTGTTCCCGGTGCTGCGGCCCCGGAGAGTGGGCATCGCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000124136.2
CDS-3UTR GCA 90 bp GGCCGCAGCACCGGGAACAGCTGGGCCTCTGGGCTCGTGTTGGCCCAGATACCTGGCTCACAGTCAAACTaGTGGGGGAGCAGACAGTCA +
Preference number: 4 (lower is better)
Translates to: GRSTGNSWASGLVLAQIPGSQSN*WGSRQS
Trigger: TGACTGTCTGCTCCCCCAGCAGTTTGACTGTGAGCC...AGGTATCTGGGCCAACACGAGCCCAGAGGCCCAGCTGTTCCCGGTGCTGCGGCC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000124136.2
CDS-3UTR CCA 90 bp CGCAGCACCGGGAACAGCTGGGCCTCTGGGCTCGTGTTGGCCCAGATACCTGAGGATGTAGGTATCCACTaGCCGACTGTGGGTCCAGGG +
Preference number: 4 (lower is better)
Translates to: RSTGNSWASGLVLAQIPEDVGIH*PTVGPG
Trigger: CCCTGGACCCACAGTCGGCCAGTGGATACCTACATC...CTCAGGTATCTGGGCCAACACGAGCCCAGAGGCCCAGCTGTTCCCGGTGCTGCG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000124136.2
CDS-3UTR CCA 90 bp AGAGCCGAAGGGCCCACACACCATCTTCTGGTCGCAGGGAGAGGTCCCCTTTCCGGAGCTGCTCCAAGGTaGCCAGCTGGTCTAGCAGGT +
Preference number: 4 (lower is better)
Translates to: RAEGPTHHLLVAGRGPLSGAAPR*PAGLAG
Trigger: ACCTGCTAGACCAGCTGGCCACCTTGGAGCAGCTCC...GGAAAGGGGACCTCTCCCTGCGACCAGAAGATGGTGTGTGGGCCCTTCGGCTCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000124136.2
CDS-3UTR GCA 90 bp CGTGGCAGTGGGGAGATGGGTGGCAATGGATGTGATGTCCCTCTCTCTCCTCCTTGCAGCTGGCTGTCGTaGCTTGCCCTCCAGCTCGGA +
Preference number: 4 (lower is better)
Translates to: RGSGEMGGNGCDVPLSPPCSWLS*LALQLG
Trigger: TCCGAGCTGGAGGGCAAGGCACGACAGCCAGCTGCA...AGGAGGAGAGAGAGGGACATCACATCCATTGCCACCCATCTCCCCACTGCCACG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000053434.15
ENSMUST00000130367.8
ENSMUST00000179968.8
CDS-3UTR GCA 90 bp AGCCGAAGGGCCCACACACCATCTTCTGGTCGCAGGGAGAGGTCCCCTTTCCTCAGTCTCTCAGCAGCTTaGCCTGGAACTGCCTCAGGC +
Preference number: 4 (lower is better)
Translates to: SRRAHTPSSGRRERSPFLSLSAA*PGTASG
Trigger: GCCTGAGGCAGTTCCAGGGCAAGCTGCTGAGAGACT...GAGGAAAGGGGACCTCTCCCTGCGACCAGAAGATGGTGTGTGGGCCCTTCGGCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000124136.2
CDS-3UTR TCA 90 bp TTGGCCGTGGCAGTGGGGAGATGGGTGGCAATGGATGTGATGTCCCTCTCTCTCGTGCTCCTGGCCACTTaGGCCACAGGAAGGGAACCA +
Preference number: 4 (lower is better)
Translates to: LAVAVGRWVAMDVMSLSLVLLAT*ATGREP
Trigger: TGGTTCCCTTCCTGTGGCTCAAGTGGCCAGGAGCAC...GAGAGAGAGGGACATCACATCCATTGCCACCCATCTCCCCACTGCCACGGCCAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000053434.15
ENSMUST00000130367.8
ENSMUST00000179968.8
CDS-3UTR GCA 90 bp TTGGCCGTGGCAGTGGGGAGATGGGTGGCAATGGATGTGATGTCCCTCTCTCTCTTTCTCCACCAGGACTaGAGTGTGGGGGCGGTGCTC +
Preference number: 4 (lower is better)
Translates to: LAVAVGRWVAMDVMSLSLFLHQD*SVGAVL
Trigger: GAGCACCGCCCCCACACTGCAGTCCTGGTGGAGAAA...GAGAGAGAGGGACATCACATCCATTGCCACCCATCTCCCCACTGCCACGGCCAA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000053434.15
ENSMUST00000130367.8
ENSMUST00000179968.8
CDS-3UTR CCA 90 bp TTGGCCGTGGCAGTGGGGAGATGGGTGGCAATGGATGTGATGTCCCTCTCTCTCGGAGCTGCTCCAAGGTaGCCAGCTGGTCTAGCAGGT +
Preference number: 4 (lower is better)
Translates to: LAVAVGRWVAMDVMSLSLGAAPR*PAGLAG
Trigger: ACCTGCTAGACCAGCTGGCCACCTTGGAGCAGCTCC...GAGAGAGAGGGACATCACATCCATTGCCACCCATCTCCCCACTGCCACGGCCAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000053434.15
ENSMUST00000130367.8
ENSMUST00000179968.8
CDS-3UTR CCA 90 bp CGTGGCAGTGGGGAGATGGGTGGCAATGGATGTGATGTCCCTCTCTCTCCTCCTCCACACACCATCTTCTaGTCGCAGGGAGAGGTCCCC +
Preference number: 4 (lower is better)
Translates to: RGSGEMGGNGCDVPLSPPPHTIF*SQGEVP
Trigger: GGGGACCTCTCCCTGCGACCAGAAGATGGTGTGTGG...AGGAGGAGAGAGAGGGACATCACATCCATTGCCACCCATCTCCCCACTGCCACG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000053434.15
ENSMUST00000130367.8
ENSMUST00000179968.8
CDS-3UTR GCA 90 bp TTGGCCGTGGCAGTGGGGAGATGGGTGGCAATGGATGTGATGTCCCTCTCTCTCGCTCTCCTGGCTGTCTaGCATTGTCCACCTTCAGCC +
Preference number: 4 (lower is better)
Translates to: LAVAVGRWVAMDVMSLSLALLAV*HCPPSA
Trigger: GGCTGAAGGTGGACAATGGCAGACAGCCAGGAGAGC...GAGAGAGAGGGACATCACATCCATTGCCACCCATCTCCCCACTGCCACGGCCAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000053434.15
ENSMUST00000130367.8
ENSMUST00000179968.8
CDS-3UTR GCA 90 bp CATGTGATGCATACGAAGTGTTCAGTCTCGAGACGCTGTGGTGACTCCGAGGCCTGCAGCTGGCTGTCGTaGCTTGCCCTCCAGCTCGGA +
Preference number: 4 (lower is better)
Translates to: HVMHTKCSVSRRCGDSEACSWLS*LALQLG
Trigger: TCCGAGCTGGAGGGCAAGGCACGACAGCCAGCTGCA...GGCCTCGGAGTCACCACAGCGTCTCGAGACTGAACACTTCGTATGCATCACATG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000053434.15
ENSMUST00000123715.8
ENSMUST00000130367.8
ENSMUST00000179968.8
CDS-3UTR CCA 90 bp CGAGGCCACCAAGATCCAGTGTCTGGGAACAGTCTGTTCAAGAGCCAAGAGGAGGCGGGCGAGCTCTCCTaGCTGTCTGCCATTGTCCAC +
Preference number: 4 (lower is better)
Translates to: RGHQDPVSGNSLFKSQEEAGELS*LSAIVH
Trigger: GTGGACAATGGCAGACAGCCAGGAGAGCTCGCCCGC...CTCCTCTTGGCTCTTGAACAGACTGTTCCCAGACACTGGATCTTGGTGGCCTCG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000053434.15
ENSMUST00000123715.8
ENSMUST00000130367.8
ENSMUST00000179968.8
CDS-3UTR CCA 90 bp CATGTGATGCATACGAAGTGTTCAGTCTCGAGACGCTGTGGTGACTCCGAGGCCGCGGGCGAGCTCTCCTaGCTGTCTGCCATTGTCCAC +
Preference number: 4 (lower is better)
Translates to: HVMHTKCSVSRRCGDSEAAGELS*LSAIVH
Trigger: GTGGACAATGGCAGACAGCCAGGAGAGCTCGCCCGC...GGCCTCGGAGTCACCACAGCGTCTCGAGACTGAACACTTCGTATGCATCACATG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000053434.15
ENSMUST00000123715.8
ENSMUST00000130367.8
ENSMUST00000179968.8
CDS-3UTR GCA 90 bp CCGAGGCCACCAAGATCCAGTGTCTGGGAACAGTCTGTTCAAGAGCCAAGAGGATTTCTCCACCAGGACTaGAGTGTGGGGGCGGTGCTC +
Preference number: 4 (lower is better)
Translates to: PRPPRSSVWEQSVQEPRGFLHQD*SVGAVL
Trigger: GAGCACCGCCCCCACACTGCAGTCCTGGTGGAGAAA...TCCTCTTGGCTCTTGAACAGACTGTTCCCAGACACTGGATCTTGGTGGCCTCGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000053434.15
ENSMUST00000123715.8
ENSMUST00000130367.8
ENSMUST00000179968.8
CDS-3UTR GCA 90 bp GTGTCTGGGAACAGTCTGTTCAAGAGCCAAGAGGAGCTAACACTTGCACGGGCATGCAGCTGGCTGTCGTaGCTTGCCCTCCAGCTCGGA +
Preference number: 4 (lower is better)
Translates to: VSGNSLFKSQEELTLARACSWLS*LALQLG
Trigger: TCCGAGCTGGAGGGCAAGGCACGACAGCCAGCTGCA...TGCCCGTGCAAGTGTTAGCTCCTCTTGGCTCTTGAACAGACTGTTCCCAGACAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000053434.15
ENSMUST00000130367.8
ENSMUST00000179968.8
CDS-3UTR GCA 90 bp CTCCGAGGCCACCAAGATCCAGTGTCTGGGAACAGTCTGTTCAAGAGCCAAGAGAGCTTGCCCTGGAACTaGCTCAGGCCTCGCTGCAGA +
Preference number: 4 (lower is better)
Translates to: LRGHQDPVSGNSLFKSQESLPWN*LRPRCR
Trigger: TCTGCAGCGAGGCCTGAGGCAGTTCCAGGGCAAGCT...CTCTTGGCTCTTGAACAGACTGTTCCCAGACACTGGATCTTGGTGGCCTCGGAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000053434.15
ENSMUST00000123715.8
ENSMUST00000130367.8
ENSMUST00000179968.8
CDS-3UTR GCA 90 bp CGAGGCCACCAAGATCCAGTGTCTGGGAACAGTCTGTTCAAGAGCCAAGAGGAGAGCTTGCCCTGGAACTaGCTCAGGCCTCGCTGCAGA +
Preference number: 4 (lower is better)
Translates to: RGHQDPVSGNSLFKSQEESLPWN*LRPRCR
Trigger: TCTGCAGCGAGGCCTGAGGCAGTTCCAGGGCAAGCT...CTCCTCTTGGCTCTTGAACAGACTGTTCCCAGACACTGGATCTTGGTGGCCTCG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000053434.15
ENSMUST00000123715.8
ENSMUST00000130367.8
ENSMUST00000179968.8
CDS-3UTR GCA 90 bp GTGATGCATACGAAGTGTTCAGTCTCGAGACGCTGTGGTGACTCCGAGGCCACCAGTCTCTCAGCAGCTTaGCCTGGAACTGCCTCAGGC +
Preference number: 4 (lower is better)
Translates to: VMHTKCSVSRRCGDSEATSLSAA*PGTASG
Trigger: GCCTGAGGCAGTTCCAGGGCAAGCTGCTGAGAGACT...GGTGGCCTCGGAGTCACCACAGCGTCTCGAGACTGAACACTTCGTATGCATCAC
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000053434.15
ENSMUST00000123715.8
ENSMUST00000130367.8
ENSMUST00000179968.8
CDS-3UTR GCA 90 bp CGTGGCAGTGGGGAGATGGGTGGCAATGGATGTGATGTCCCTCTCTCTCCTCCTGGCTCACAGTCAAACTaGTGGGGGAGCAGACAGTCA +
Preference number: 4 (lower is better)
Translates to: RGSGEMGGNGCDVPLSPPGSQSN*WGSRQS
Trigger: TGACTGTCTGCTCCCCCAGCAGTTTGACTGTGAGCC...AGGAGGAGAGAGAGGGACATCACATCCATTGCCACCCATCTCCCCACTGCCACG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000053434.15
ENSMUST00000130367.8
ENSMUST00000179968.8
CDS-3UTR GCA 90 bp TTGGCCGTGGCAGTGGGGAGATGGGTGGCAATGGATGTGATGTCCCTCTCTCTCGGCTCACAGTCAAACTaGTGGGGGAGCAGACAGTCA +
Preference number: 4 (lower is better)
Translates to: LAVAVGRWVAMDVMSLSLGSQSN*WGSRQS
Trigger: TGACTGTCTGCTCCCCCAGCAGTTTGACTGTGAGCC...GAGAGAGAGGGACATCACATCCATTGCCACCCATCTCCCCACTGCCACGGCCAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000053434.15
ENSMUST00000130367.8
ENSMUST00000179968.8
CDS-3UTR GCA 90 bp GTGTCTGGGAACAGTCTGTTCAAGAGCCAAGAGGAGCTAACACTTGCACGGGCACATAATCCAGGGCGATaGCCACTCTCCGGGGCCGCA +
Preference number: 4 (lower is better)
Translates to: VSGNSLFKSQEELTLARAHNPGR*PLSGAA
Trigger: TGCGGCCCCGGAGAGTGGGCATCGCCCTGGATTATG...TGCCCGTGCAAGTGTTAGCTCCTCTTGGCTCTTGAACAGACTGTTCCCAGACAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000053434.15
ENSMUST00000130367.8
ENSMUST00000179968.8
CDS-3UTR CCA 90 bp CTCCGAGGCCACCAAGATCCAGTGTCTGGGAACAGTCTGTTCAAGAGCCAAGAGGGAGCTGCTCCAAGGTaGCCAGCTGGTCTAGCAGGT +
Preference number: 4 (lower is better)
Translates to: LRGHQDPVSGNSLFKSQEGAAPR*PAGLAG
Trigger: ACCTGCTAGACCAGCTGGCCACCTTGGAGCAGCTCC...CTCTTGGCTCTTGAACAGACTGTTCCCAGACACTGGATCTTGGTGGCCTCGGAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000053434.15
ENSMUST00000123715.8
ENSMUST00000130367.8
ENSMUST00000179968.8
CDS-3UTR CCA 90 bp CTCCGAGGCCACCAAGATCCAGTGTCTGGGAACAGTCTGTTCAAGAGCCAAGAGCATCAGCTCTGCAGCTaGCTGTCGTGCCTTGCCCTC +
Preference number: 4 (lower is better)
Translates to: LRGHQDPVSGNSLFKSQEHQLCS*LSCLAL
Trigger: GAGGGCAAGGCACGACAGCCAGCTGCAGAGCTGATG...CTCTTGGCTCTTGAACAGACTGTTCCCAGACACTGGATCTTGGTGGCCTCGGAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000053434.15
ENSMUST00000123715.8
ENSMUST00000130367.8
ENSMUST00000179968.8
CDS-3UTR CCA 90 bp CTCCGAGGCCACCAAGATCCAGTGTCTGGGAACAGTCTGTTCAAGAGCCAAGAGTCCACTGGCCGACTGTaGGTCCAGGGTGACGCTTAC +
Preference number: 4 (lower is better)
Translates to: LRGHQDPVSGNSLFKSQESTGRL*VQGDAY
Trigger: GTAAGCGTCACCCTGGACCCACAGTCGGCCAGTGGA...CTCTTGGCTCTTGAACAGACTGTTCCCAGACACTGGATCTTGGTGGCCTCGGAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000053434.15
ENSMUST00000130367.8
ENSMUST00000179968.8
CDS-3UTR TCA 90 bp CGTGGCAGTGGGGAGATGGGTGGCAATGGATGTGATGTCCCTCTCTCTCCTCCTGGGACTCTGCATTGGTaGATGTCACAGTGCCACCTT +
Preference number: 4 (lower is better)
Translates to: RGSGEMGGNGCDVPLSPPGTLHW*MSQCHL
Trigger: AAGGTGGCACTGTGACATTCACCAATGCAGAGTCCC...AGGAGGAGAGAGAGGGACATCACATCCATTGCCACCCATCTCCCCACTGCCACG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000053434.15
ENSMUST00000130367.8
ENSMUST00000179968.8
CDS-3UTR GCA 90 bp CCGAGGCCACCAAGATCCAGTGTCTGGGAACAGTCTGTTCAAGAGCCAAGAGGAGCTCTCCTGGCTGTCTaGCATTGTCCACCTTCAGCC +
Preference number: 4 (lower is better)
Translates to: PRPPRSSVWEQSVQEPRGALLAV*HCPPSA
Trigger: GGCTGAAGGTGGACAATGGCAGACAGCCAGGAGAGC...TCCTCTTGGCTCTTGAACAGACTGTTCCCAGACACTGGATCTTGGTGGCCTCGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000053434.15
ENSMUST00000123715.8
ENSMUST00000130367.8
ENSMUST00000179968.8
CDS-3UTR GCA 90 bp CAGCATGTGATGCATACGAAGTGTTCAGTCTCGAGACGCTGTGGTGACTCCGAGTTTCTCCACCAGGACTaGAGTGTGGGGGCGGTGCTC +
Preference number: 4 (lower is better)
Translates to: QHVMHTKCSVSRRCGDSEFLHQD*SVGAVL
Trigger: GAGCACCGCCCCCACACTGCAGTCCTGGTGGAGAAA...CTCGGAGTCACCACAGCGTCTCGAGACTGAACACTTCGTATGCATCACATGCTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000053434.15
ENSMUST00000123715.8
ENSMUST00000130367.8
ENSMUST00000179968.8
CDS-3UTR GCA 90 bp CCCAGATACCTGAGGGGGAGAGCCGAAGGGCCCACACACCATCTTCTGGTCGCATGCCTCAGGCCTCGCTaGAGAGAAAGAAGTTTATCT +
Preference number: 4 (lower is better)
Translates to: PRYLRGRAEGPTHHLLVACLRPR*RERSLS
Trigger: AGATAAACTTCTTTCTCTGCAGCGAGGCCTGAGGCA...TGCGACCAGAAGATGGTGTGTGGGCCCTTCGGCTCTCCCCCTCAGGTATCTGGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000124136.2
CDS-3UTR GCA 90 bp GCCAAGGCCCTGCTCAACAAAGAACACAGGGACAAGACAAATGGGTGTGTTCAGCATAATCCAGGGCGATaGCCACTCTCCGGGGCCGCA +
Preference number: 4 (lower is better)
Translates to: AKALLNKEHRDKTNGCVQHNPGR*PLSGAA
Trigger: TGCGGCCCCGGAGAGTGGGCATCGCCCTGGATTATG...CTGAACACACCCATTTGTCTTGTCCCTGTGTTCTTTGTTGAGCAGGGCCTTGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000053434.15
ENSMUST00000130367.8
ENSMUST00000179968.8
CDS-3UTR CCA 90 bp CCGAGGCCACCAAGATCCAGTGTCTGGGAACAGTCTGTTCAAGAGCCAAGAGGAGATGTAGGTATCCACTaGCCGACTGTGGGTCCAGGG +
Preference number: 4 (lower is better)
Translates to: PRPPRSSVWEQSVQEPRGDVGIH*PTVGPG
Trigger: CCCTGGACCCACAGTCGGCCAGTGGATACCTACATC...TCCTCTTGGCTCTTGAACAGACTGTTCCCAGACACTGGATCTTGGTGGCCTCGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000053434.15
ENSMUST00000130367.8
ENSMUST00000179968.8
CDS-3UTR CCA 90 bp CAGCATGTGATGCATACGAAGTGTTCAGTCTCGAGACGCTGTGGTGACTCCGAGCCACACACCATCTTCTaGTCGCAGGGAGAGGTCCCC +
Preference number: 4 (lower is better)
Translates to: QHVMHTKCSVSRRCGDSEPHTIF*SQGEVP
Trigger: GGGGACCTCTCCCTGCGACCAGAAGATGGTGTGTGG...CTCGGAGTCACCACAGCGTCTCGAGACTGAACACTTCGTATGCATCACATGCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000053434.15
ENSMUST00000130367.8
ENSMUST00000179968.8
CDS-3UTR CCA 90 bp AGGCAGCATGTGATGCATACGAAGTGTTCAGTCTCGAGACGCTGTGGTGACTCCGAACAGCTGGGCCTCTaGGCTCGTGTTGGCCCAGAT +
Preference number: 4 (lower is better)
Translates to: RQHVMHTKCSVSRRCGDSEQLGL*ARVGPD
Trigger: ATCTGGGCCAACACGAGCCCAGAGGCCCAGCTGTTC...GGAGTCACCACAGCGTCTCGAGACTGAACACTTCGTATGCATCACATGCTGCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000053434.15
ENSMUST00000130367.8
ENSMUST00000179968.8
CDS-3UTR TCA 90 bp CGTGGCAGTGGGGAGATGGGTGGCAATGGATGTGATGTCCCTCTCTCTCCTCCTGCTTCTCCCTTGGCTTaGAAGCCCTGGATTTTGTCT +
Preference number: 4 (lower is better)
Translates to: RGSGEMGGNGCDVPLSPPASPLA*KPWILS
Trigger: AGACAAAATCCAGGGCTTTCAAGCCAAGGGAGAAGC...AGGAGGAGAGAGAGGGACATCACATCCATTGCCACCCATCTCCCCACTGCCACG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000053434.15
ENSMUST00000130367.8
ENSMUST00000179968.8
CDS-3UTR TCA 90 bp CAGCATGTGATGCATACGAAGTGTTCAGTCTCGAGACGCTGTGGTGACTCCGAGCCTCCAGCTCGGAGATaGCCAGAGTCAACCGGTCAA +
Preference number: 4 (lower is better)
Translates to: QHVMHTKCSVSRRCGDSEPPARR*PESTGQ
Trigger: TTGACCGGTTGACTCTGGTCATCTCCGAGCTGGAGG...CTCGGAGTCACCACAGCGTCTCGAGACTGAACACTTCGTATGCATCACATGCTG
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000053434.15
ENSMUST00000123715.8
ENSMUST00000130367.8
ENSMUST00000179968.8
CDS-3UTR TCA 90 bp CGTGGCAGTGGGGAGATGGGTGGCAATGGATGTGATGTCCCTCTCTCTCCTCCTACTGTGGGTCCAGGGTaGCGCTTACTGTCTTATACT +
Preference number: 4 (lower is better)
Translates to: RGSGEMGGNGCDVPLSPPTVGPG*RLLSYT
Trigger: AGTATAAGACAGTAAGCGTCACCCTGGACCCACAGT...AGGAGGAGAGAGAGGGACATCACATCCATTGCCACCCATCTCCCCACTGCCACG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000053434.15
ENSMUST00000130367.8
ENSMUST00000179968.8
CDS-3UTR GCA 90 bp CTCCGAGGCCACCAAGATCCAGTGTCTGGGAACAGTCTGTTCAAGAGCCAAGAGACCAGACTTGCTAGCTaGCACACGGGTCGGATGTTC +
Preference number: 4 (lower is better)
Translates to: LRGHQDPVSGNSLFKSQETRLAS*HTGRMF
Trigger: GAACATCCGACCCGTGTGGCAGCTAGCAAGTCTGGT...CTCTTGGCTCTTGAACAGACTGTTCCCAGACACTGGATCTTGGTGGCCTCGGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000053434.15
ENSMUST00000123715.8
ENSMUST00000130367.8
ENSMUST00000179968.8
CDS-3UTR GCA 90 bp CATGTGATGCATACGAAGTGTTCAGTCTCGAGACGCTGTGGTGACTCCGAGGCCACCAGACTTGCTAGCTaGCACACGGGTCGGATGTTC +
Preference number: 4 (lower is better)
Translates to: HVMHTKCSVSRRCGDSEATRLAS*HTGRMF
Trigger: GAACATCCGACCCGTGTGGCAGCTAGCAAGTCTGGT...GGCCTCGGAGTCACCACAGCGTCTCGAGACTGAACACTTCGTATGCATCACATG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000053434.15
ENSMUST00000123715.8
ENSMUST00000130367.8
ENSMUST00000179968.8
CDS-3UTR GCA 90 bp CAGCATGTGATGCATACGAAGTGTTCAGTCTCGAGACGCTGTGGTGACTCCGAGGCTCTCCTGGCTGTCTaGCATTGTCCACCTTCAGCC +
Preference number: 4 (lower is better)
Translates to: QHVMHTKCSVSRRCGDSEALLAV*HCPPSA
Trigger: GGCTGAAGGTGGACAATGGCAGACAGCCAGGAGAGC...CTCGGAGTCACCACAGCGTCTCGAGACTGAACACTTCGTATGCATCACATGCTG
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000053434.15
ENSMUST00000123715.8
ENSMUST00000130367.8
ENSMUST00000179968.8
CDS-3UTR GCA 90 bp CTCCGAGGCCACCAAGATCCAGTGTCTGGGAACAGTCTGTTCAAGAGCCAAGAGTACTGCCTCTGCTCCTaGAGCTTTGTCAGTGCAGCC +
Preference number: 4 (lower is better)
Translates to: LRGHQDPVSGNSLFKSQEYCLCS*SFVSAA
Trigger: GGCTGCACTGACAAAGCTGCAGGAGCAGAGGCAGTA...CTCTTGGCTCTTGAACAGACTGTTCCCAGACACTGGATCTTGGTGGCCTCGGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000053434.15
ENSMUST00000123715.8
ENSMUST00000130367.8
ENSMUST00000179968.8
CDS-3UTR GCA 90 bp CAGCATGTGATGCATACGAAGTGTTCAGTCTCGAGACGCTGTGGTGACTCCGAGAGTCTCTCAGCAGCTTaGCCTGGAACTGCCTCAGGC +
Preference number: 4 (lower is better)
Translates to: QHVMHTKCSVSRRCGDSESLSAA*PGTASG
Trigger: GCCTGAGGCAGTTCCAGGGCAAGCTGCTGAGAGACT...CTCGGAGTCACCACAGCGTCTCGAGACTGAACACTTCGTATGCATCACATGCTG
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000053434.15
ENSMUST00000123715.8
ENSMUST00000130367.8
ENSMUST00000179968.8
CDS-3UTR GCA 90 bp AGGCAGCATGTGATGCATACGAAGTGTTCAGTCTCGAGACGCTGTGGTGACTCCAGTCTCTCAGCAGCTTaGCCTGGAACTGCCTCAGGC +
Preference number: 4 (lower is better)
Translates to: RQHVMHTKCSVSRRCGDSSLSAA*PGTASG
Trigger: GCCTGAGGCAGTTCCAGGGCAAGCTGCTGAGAGACT...GGAGTCACCACAGCGTCTCGAGACTGAACACTTCGTATGCATCACATGCTGCCT
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000053434.15
ENSMUST00000123715.8
ENSMUST00000130367.8
ENSMUST00000179968.8
CDS-3UTR GCA 90 bp CAGCATGTGATGCATACGAAGTGTTCAGTCTCGAGACGCTGTGGTGACTCCGAGTCTCAGCAGAAGGCGTaGTCCTGGCCACTTGAGCCA +
Preference number: 4 (lower is better)
Translates to: QHVMHTKCSVSRRCGDSESQQKA*SWPLEP
Trigger: TGGCTCAAGTGGCCAGGAGCACGCCTTCTGCTGAGA...CTCGGAGTCACCACAGCGTCTCGAGACTGAACACTTCGTATGCATCACATGCTG
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000053434.15
ENSMUST00000130367.8
ENSMUST00000179968.8
CDS-3UTR GCA 90 bp AGGCAGCATGTGATGCATACGAAGTGTTCAGTCTCGAGACGCTGTGGTGACTCCTCTCAGCAGAAGGCGTaGTCCTGGCCACTTGAGCCA +
Preference number: 4 (lower is better)
Translates to: RQHVMHTKCSVSRRCGDSSQQKA*SWPLEP
Trigger: TGGCTCAAGTGGCCAGGAGCACGCCTTCTGCTGAGA...GGAGTCACCACAGCGTCTCGAGACTGAACACTTCGTATGCATCACATGCTGCCT
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000053434.15
ENSMUST00000130367.8
ENSMUST00000179968.8
CDS-3UTR GCA 90 bp AGGCAGCATGTGATGCATACGAAGTGTTCAGTCTCGAGACGCTGTGGTGACTCCCAGGTACACACAGCCTaGATCAGCTCTGCAGCTGGC +
Preference number: 4 (lower is better)
Translates to: RQHVMHTKCSVSRRCGDSQVHTA*ISSAAG
Trigger: GCCAGCTGCAGAGCTGATGCAGGCTGTGTGTACCTG...GGAGTCACCACAGCGTCTCGAGACTGAACACTTCGTATGCATCACATGCTGCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000179968.8
CDS-3UTR CCA 90 bp CGTGGCAGTGGGGAGATGGGTGGCAATGGATGTGATGTCCCTCTCTCTCCTCCTCCAGAACTTCTTCCGTaGGTACTTGTTGGCGAAGTC +
Preference number: 4 (lower is better)
Translates to: RGSGEMGGNGCDVPLSPPPELLP*VLVGEV
Trigger: GACTTCGCCAACAAGTACCCACGGAAGAAGTTCTGG...AGGAGGAGAGAGAGGGACATCACATCCATTGCCACCCATCTCCCCACTGCCACG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000053434.15
ENSMUST00000130367.8
ENSMUST00000179968.8
CDS-3UTR CCA 90 bp GCCAAGGCCCTGCTCAACAAAGAACACAGGGACAAGACAAATGGGTGTGTTCAGTCCACTGGCCGACTGTaGGTCCAGGGTGACGCTTAC +
Preference number: 4 (lower is better)
Translates to: AKALLNKEHRDKTNGCVQSTGRL*VQGDAY
Trigger: GTAAGCGTCACCCTGGACCCACAGTCGGCCAGTGGA...CTGAACACACCCATTTGTCTTGTCCCTGTGTTCTTTGTTGAGCAGGGCCTTGGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000053434.15
ENSMUST00000130367.8
ENSMUST00000179968.8
CDS-3UTR CCA 90 bp CAGCATGTGATGCATACGAAGTGTTCAGTCTCGAGACGCTGTGGTGACTCCGAGGATGTAGGTATCCACTaGCCGACTGTGGGTCCAGGG +
Preference number: 4 (lower is better)
Translates to: QHVMHTKCSVSRRCGDSEDVGIH*PTVGPG
Trigger: CCCTGGACCCACAGTCGGCCAGTGGATACCTACATC...CTCGGAGTCACCACAGCGTCTCGAGACTGAACACTTCGTATGCATCACATGCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000053434.15
ENSMUST00000130367.8
ENSMUST00000179968.8
CDS-3UTR CCA 90 bp CAGCATGTGATGCATACGAAGTGTTCAGTCTCGAGACGCTGTGGTGACTCCGAGCAGAAGGCGTGCTCCTaGCCACTTGAGCCACAGGAA +
Preference number: 4 (lower is better)
Translates to: QHVMHTKCSVSRRCGDSEQKACS*PLEPQE
Trigger: TTCCTGTGGCTCAAGTGGCCAGGAGCACGCCTTCTG...CTCGGAGTCACCACAGCGTCTCGAGACTGAACACTTCGTATGCATCACATGCTG
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000053434.15
ENSMUST00000130367.8
ENSMUST00000179968.8
CDS-3UTR GCA 90 bp GTGATGCATACGAAGTGTTCAGTCTCGAGACGCTGTGGTGACTCCGAGGCCACCTGTAGCTTCTCCTGGTaGCGCTCACACAACTTCATG +
Preference number: 4 (lower is better)
Translates to: VMHTKCSVSRRCGDSEATCSFSW*RSHNFM
Trigger: CATGAAGTTGTGTGAGCGGCACCAGGAGAAGCTACA...GGTGGCCTCGGAGTCACCACAGCGTCTCGAGACTGAACACTTCGTATGCATCAC
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000053434.15
ENSMUST00000123715.8
ENSMUST00000130367.8
ENSMUST00000179968.8
CDS-3UTR GCA 90 bp TTGGCCGTGGCAGTGGGGAGATGGGTGGCAATGGATGTGATGTCCCTCTCTCTCCTGCAGCTTTGTCAGTaGAGCCAGAATATCAGCTTC +
Preference number: 4 (lower is better)
Translates to: LAVAVGRWVAMDVMSLSLLQLCQ*SQNISF
Trigger: GAAGCTGATATTCTGGCTGCACTGACAAAGCTGCAG...GAGAGAGAGGGACATCACATCCATTGCCACCCATCTCCCCACTGCCACGGCCAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000053434.15
ENSMUST00000130367.8
ENSMUST00000179968.8
CDS-3UTR GCA 90 bp CAGCATGTGATGCATACGAAGTGTTCAGTCTCGAGACGCTGTGGTGACTCCGAGTACTGCCTCTGCTCCTaGAGCTTTGTCAGTGCAGCC +
Preference number: 4 (lower is better)
Translates to: QHVMHTKCSVSRRCGDSEYCLCS*SFVSAA
Trigger: GGCTGCACTGACAAAGCTGCAGGAGCAGAGGCAGTA...CTCGGAGTCACCACAGCGTCTCGAGACTGAACACTTCGTATGCATCACATGCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000053434.15
ENSMUST00000123715.8
ENSMUST00000130367.8
ENSMUST00000179968.8
CDS-3UTR GCA 90 bp AGGCAGCATGTGATGCATACGAAGTGTTCAGTCTCGAGACGCTGTGGTGACTCCTACTGCCTCTGCTCCTaGAGCTTTGTCAGTGCAGCC +
Preference number: 4 (lower is better)
Translates to: RQHVMHTKCSVSRRCGDSYCLCS*SFVSAA
Trigger: GGCTGCACTGACAAAGCTGCAGGAGCAGAGGCAGTA...GGAGTCACCACAGCGTCTCGAGACTGAACACTTCGTATGCATCACATGCTGCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000053434.15
ENSMUST00000123715.8
ENSMUST00000130367.8
ENSMUST00000179968.8
CDS-3UTR GCA 90 bp CATGTGATGCATACGAAGTGTTCAGTCTCGAGACGCTGTGGTGACTCCGAGGCCTCCGCCACAATGTACTaGCTCTGCTCCTGCAGCTTT +
Preference number: 4 (lower is better)
Translates to: HVMHTKCSVSRRCGDSEASATMY*LCSCSF
Trigger: AAAGCTGCAGGAGCAGAGGCAGTACATTGTGGCGGA...GGCCTCGGAGTCACCACAGCGTCTCGAGACTGAACACTTCGTATGCATCACATG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000053434.15
ENSMUST00000123715.8
ENSMUST00000130367.8
ENSMUST00000179968.8
CDS-3UTR GCA 90 bp GTGTCTGGGAACAGTCTGTTCAAGAGCCAAGAGGAGCTAACACTTGCACGGGCAGGCTCACAGTCAAACTaGTGGGGGAGCAGACAGTCA +
Preference number: 4 (lower is better)
Translates to: VSGNSLFKSQEELTLARAGSQSN*WGSRQS
Trigger: TGACTGTCTGCTCCCCCAGCAGTTTGACTGTGAGCC...TGCCCGTGCAAGTGTTAGCTCCTCTTGGCTCTTGAACAGACTGTTCCCAGACAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000053434.15
ENSMUST00000130367.8
ENSMUST00000179968.8
CDS-3UTR GCA 90 bp GTGATGCATACGAAGTGTTCAGTCTCGAGACGCTGTGGTGACTCCGAGGCCACCTGGCCACTCCCACCATaGAGCTTTCCTGAACTTCTT +
Preference number: 4 (lower is better)
Translates to: VMHTKCSVSRRCGDSEATWPLPP*SFPELL
Trigger: AAGAAGTTCAGGAAAGCTGCATGGTGGGAGTGGCCA...GGTGGCCTCGGAGTCACCACAGCGTCTCGAGACTGAACACTTCGTATGCATCAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000053434.15
ENSMUST00000130367.8
ENSMUST00000179968.8
CDS-3UTR GCA 90 bp ACTTCGAGGACAGCAAAAACAGCTTCAGATGTGATGGAAAGTCTACCTGTGGGCCATAATCCAGGGCGATaGCCACTCTCCGGGGCCGCA +
Preference number: 4 (lower is better)
Translates to: TSRTAKTASDVMESLPVGHNPGR*PLSGAA
Trigger: TGCGGCCCCGGAGAGTGGGCATCGCCCTGGATTATG...GCCCACAGGTAGACTTTCCATCACATCTGAAGCTGTTTTTGCTGTCCTCGAAGT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000053434.15
ENSMUST00000130367.8
ENSMUST00000179968.8
CDS-3UTR CCA 90 bp AATGGGTGTGTTCAGGAAAGAGGGAGTCATTTGGTCTTCAGAGCAGGAAACCTCGCGGGCGAGCTCTCCTaGCTGTCTGCCATTGTCCAC +
Preference number: 4 (lower is better)
Translates to: NGCVQERGSHLVFRAGNLAGELS*LSAIVH
Trigger: GTGGACAATGGCAGACAGCCAGGAGAGCTCGCCCGC...GAGGTTTCCTGCTCTGAAGACCAAATGACTCCCTCTTTCCTGAACACACCCATT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000053434.15
ENSMUST00000130367.8
ENSMUST00000179968.8
CDS-3UTR CCA 90 bp GCCAAGGCCCTGCTCAACAAAGAACACAGGGACAAGACAAATGGGTGTGTTCAGGATGTAGGTATCCACTaGCCGACTGTGGGTCCAGGG +
Preference number: 4 (lower is better)
Translates to: AKALLNKEHRDKTNGCVQDVGIH*PTVGPG
Trigger: CCCTGGACCCACAGTCGGCCAGTGGATACCTACATC...CTGAACACACCCATTTGTCTTGTCCCTGTGTTCTTTGTTGAGCAGGGCCTTGGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000053434.15
ENSMUST00000130367.8
ENSMUST00000179968.8
CDS-3UTR CCA 90 bp CCGAGGCCACCAAGATCCAGTGTCTGGGAACAGTCTGTTCAAGAGCCAAGAGGATCACAGTCAAACTGCTaGGGGAGCAGACAGTCACTC +
Preference number: 4 (lower is better)
Translates to: PRPPRSSVWEQSVQEPRGSQSNC*GSRQSL
Trigger: GAGTGACTGTCTGCTCCCCCAGCAGTTTGACTGTGA...TCCTCTTGGCTCTTGAACAGACTGTTCCCAGACACTGGATCTTGGTGGCCTCGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000053434.15
ENSMUST00000130367.8
ENSMUST00000179968.8
CDS-3UTR TCA 90 bp CGAGGCCACCAAGATCCAGTGTCTGGGAACAGTCTGTTCAAGAGCCAAGAGGAGGCTTCTCCCTTGGCTTaGAAGCCCTGGATTTTGTCT +
Preference number: 4 (lower is better)
Translates to: RGHQDPVSGNSLFKSQEEASPLA*KPWILS
Trigger: AGACAAAATCCAGGGCTTTCAAGCCAAGGGAGAAGC...CTCCTCTTGGCTCTTGAACAGACTGTTCCCAGACACTGGATCTTGGTGGCCTCG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000053434.15
ENSMUST00000123715.8
ENSMUST00000130367.8
ENSMUST00000179968.8
CDS-3UTR GCA 90 bp CTCCGAGGCCACCAAGATCCAGTGTCTGGGAACAGTCTGTTCAAGAGCCAAGAGTGTAGCTTCTCCTGGTaGCGCTCACACAACTTCATG +
Preference number: 4 (lower is better)
Translates to: LRGHQDPVSGNSLFKSQECSFSW*RSHNFM
Trigger: CATGAAGTTGTGTGAGCGGCACCAGGAGAAGCTACA...CTCTTGGCTCTTGAACAGACTGTTCCCAGACACTGGATCTTGGTGGCCTCGGAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000053434.15
ENSMUST00000123715.8
ENSMUST00000130367.8
ENSMUST00000179968.8
CDS-3UTR GCA 90 bp GTGATGCATACGAAGTGTTCAGTCTCGAGACGCTGTGGTGACTCCGAGGCCACCCTGCAGCTTTGTCAGTaGAGCCAGAATATCAGCTTC +
Preference number: 4 (lower is better)
Translates to: VMHTKCSVSRRCGDSEATLQLCQ*SQNISF
Trigger: GAAGCTGATATTCTGGCTGCACTGACAAAGCTGCAG...GGTGGCCTCGGAGTCACCACAGCGTCTCGAGACTGAACACTTCGTATGCATCAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000053434.15
ENSMUST00000123715.8
ENSMUST00000130367.8
ENSMUST00000179968.8
CDS-3UTR GCA 90 bp GTGATGCATACGAAGTGTTCAGTCTCGAGACGCTGTGGTGACTCCGAGGCCACCTGCCTCAGGCCTCGCTaGAGAGAAAGAAGTTTATCT +
Preference number: 4 (lower is better)
Translates to: VMHTKCSVSRRCGDSEATCLRPR*RERSLS
Trigger: AGATAAACTTCTTTCTCTGCAGCGAGGCCTGAGGCA...GGTGGCCTCGGAGTCACCACAGCGTCTCGAGACTGAACACTTCGTATGCATCAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000053434.15
ENSMUST00000123715.8
ENSMUST00000130367.8
ENSMUST00000179968.8
CDS-3UTR GCA 90 bp AATGGGTGTGTTCAGGAAAGAGGGAGTCATTTGGTCTTCAGAGCAGGAAACCTCAGCTTGCCCTGGAACTaGCTCAGGCCTCGCTGCAGA +
Preference number: 4 (lower is better)
Translates to: NGCVQERGSHLVFRAGNLSLPWN*LRPRCR
Trigger: TCTGCAGCGAGGCCTGAGGCAGTTCCAGGGCAAGCT...GAGGTTTCCTGCTCTGAAGACCAAATGACTCCCTCTTTCCTGAACACACCCATT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000053434.15
ENSMUST00000130367.8
ENSMUST00000179968.8
CDS-3UTR GCA 90 bp CGAGGCCACCAAGATCCAGTGTCTGGGAACAGTCTGTTCAAGAGCCAAGAGGAGTGGCCACTCCCACCATaGAGCTTTCCTGAACTTCTT +
Preference number: 4 (lower is better)
Translates to: RGHQDPVSGNSLFKSQEEWPLPP*SFPELL
Trigger: AAGAAGTTCAGGAAAGCTGCATGGTGGGAGTGGCCA...CTCCTCTTGGCTCTTGAACAGACTGTTCCCAGACACTGGATCTTGGTGGCCTCG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000053434.15
ENSMUST00000130367.8
ENSMUST00000179968.8
CDS-3UTR CCA 90 bp TGGTCAAGAGCAAGATGTTCGGGTTGTTTTAAAAACTTCCTTCACAAGGACTGCACCAGGACTGCAGTGTaGGGGCGGTGCTCCCGGGAC +
Preference number: 4 (lower is better)
Translates to: WSRARCSGCFKNFLHKDCTRTAV*GRCSRD
Trigger: GTCCCGGGAGCACCGCCCCCACACTGCAGTCCTGGT...GCAGTCCTTGTGAAGGAAGTTTTTAAAACAACCCGAACATCTTGCTCTTGACCA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000053434.15
ENSMUST00000130367.8
ENSMUST00000179968.8
CDS-3UTR CCA 90 bp CCTTCCTCCATTATAGTTTTGGGATCCCAGAGAAGGGAAGTTTCCATGGGTGTGGGAGCTGCTCCAAGGTaGCCAGCTGGTCTAGCAGGT +
Preference number: 4 (lower is better)
Translates to: PSSIIVLGSQRREVSMGVGAAPR*PAGLAG
Trigger: ACCTGCTAGACCAGCTGGCCACCTTGGAGCAGCTCC...CACACCCATGGAAACTTCCCTTCTCTGGGATCCCAAAACTATAATGGAGGAAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000053434.15
ENSMUST00000130367.8
ENSMUST00000179968.8
CDS-3UTR CCA 90 bp GTGTTCAGGAAAGAGGGAGTCATTTGGTCTTCAGAGCAGGAAACCTCAGAGGAACATCAGCTCTGCAGCTaGCTGTCGTGCCTTGCCCTC +
Preference number: 4 (lower is better)
Translates to: VFRKEGVIWSSEQETSEEHQLCS*LSCLAL
Trigger: GAGGGCAAGGCACGACAGCCAGCTGCAGAGCTGATG...TTCCTCTGAGGTTTCCTGCTCTGAAGACCAAATGACTCCCTCTTTCCTGAACAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000053434.15
ENSMUST00000130367.8
ENSMUST00000179968.8
CDS-3UTR CCA 90 bp CTCCGAGGCCACCAAGATCCAGTGTCTGGGAACAGTCTGTTCAAGAGCCAAGAGCCAGAACTTCTTCCGTaGGTACTTGTTGGCGAAGTC +
Preference number: 4 (lower is better)
Translates to: LRGHQDPVSGNSLFKSQEPELLP*VLVGEV
Trigger: GACTTCGCCAACAAGTACCCACGGAAGAAGTTCTGG...CTCTTGGCTCTTGAACAGACTGTTCCCAGACACTGGATCTTGGTGGCCTCGGAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000053434.15
ENSMUST00000123715.8
ENSMUST00000130367.8
ENSMUST00000179968.8
CDS-3UTR CCA 90 bp CCTTCCTCCATTATAGTTTTGGGATCCCAGAGAAGGGAAGTTTCCATGGGTGTGTCCACTGGCCGACTGTaGGTCCAGGGTGACGCTTAC +
Preference number: 4 (lower is better)
Translates to: PSSIIVLGSQRREVSMGVSTGRL*VQGDAY
Trigger: GTAAGCGTCACCCTGGACCCACAGTCGGCCAGTGGA...CACACCCATGGAAACTTCCCTTCTCTGGGATCCCAAAACTATAATGGAGGAAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000053434.15
ENSMUST00000130367.8
ENSMUST00000179968.8
CDS-3UTR CCA 90 bp GTGTCTGGGAACAGTCTGTTCAAGAGCCAAGAGGAGCTAACACTTGCACGGGCATCACAGTCAAACTGCTaGGGGAGCAGACAGTCACTC +
Preference number: 4 (lower is better)
Translates to: VSGNSLFKSQEELTLARASQSNC*GSRQSL
Trigger: GAGTGACTGTCTGCTCCCCCAGCAGTTTGACTGTGA...TGCCCGTGCAAGTGTTAGCTCCTCTTGGCTCTTGAACAGACTGTTCCCAGACAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000053434.15
ENSMUST00000130367.8
ENSMUST00000179968.8
CDS-3UTR CCA 90 bp CCTTCCTCCATTATAGTTTTGGGATCCCAGAGAAGGGAAGTTTCCATGGGTGTGGAACAGCTGGGCCTCTaGGCTCGTGTTGGCCCAGAT +
Preference number: 4 (lower is better)
Translates to: PSSIIVLGSQRREVSMGVEQLGL*ARVGPD
Trigger: ATCTGGGCCAACACGAGCCCAGAGGCCCAGCTGTTC...CACACCCATGGAAACTTCCCTTCTCTGGGATCCCAAAACTATAATGGAGGAAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000053434.15
ENSMUST00000130367.8
ENSMUST00000179968.8
CDS-3UTR TCA 90 bp CGAGGCCACCAAGATCCAGTGTCTGGGAACAGTCTGTTCAAGAGCCAAGAGGAGTTCCTCTTCCCCCAGTaGTTCGTCTTCTTCATCTGT +
Preference number: 4 (lower is better)
Translates to: RGHQDPVSGNSLFKSQEEFLFPQ*FVFFIC
Trigger: ACAGATGAAGAAGACGAATCACTGGGGGAAGAGGAA...CTCCTCTTGGCTCTTGAACAGACTGTTCCCAGACACTGGATCTTGGTGGCCTCG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000053434.15
ENSMUST00000130367.8
ENSMUST00000179968.8
CDS-3UTR GCA 90 bp AGGCAGCATGTGATGCATACGAAGTGTTCAGTCTCGAGACGCTGTGGTGACTCCTATCACTTGTGCAGCTaGGACAGAAGACATGGCCAC +
Preference number: 4 (lower is better)
Translates to: RQHVMHTKCSVSRRCGDSYHLCS*DRRHGH
Trigger: GTGGCCATGTCTTCTGTCGCAGCTGCACAAGTGATA...GGAGTCACCACAGCGTCTCGAGACTGAACACTTCGTATGCATCACATGCTGCCT
52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000053434.15
ENSMUST00000123715.8
ENSMUST00000130367.8
ENSMUST00000179968.8
CDS-3UTR GCA 90 bp GTGTCTGGGAACAGTCTGTTCAAGAGCCAAGAGGAGCTAACACTTGCACGGGCATATCACTTGTGCAGCTaGGACAGAAGACATGGCCAC +
Preference number: 4 (lower is better)
Translates to: VSGNSLFKSQEELTLARAYHLCS*DRRHGH
Trigger: GTGGCCATGTCTTCTGTCGCAGCTGCACAAGTGATA...TGCCCGTGCAAGTGTTAGCTCCTCTTGGCTCTTGAACAGACTGTTCCCAGACAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000053434.15
ENSMUST00000130367.8
ENSMUST00000179968.8
CDS-3UTR GCA 90 bp AATGGGTGTGTTCAGGAAAGAGGGAGTCATTTGGTCTTCAGAGCAGGAAACCTCGCTCTCCTGGCTGTCTaGCATTGTCCACCTTCAGCC +
Preference number: 4 (lower is better)
Translates to: NGCVQERGSHLVFRAGNLALLAV*HCPPSA
Trigger: GGCTGAAGGTGGACAATGGCAGACAGCCAGGAGAGC...GAGGTTTCCTGCTCTGAAGACCAAATGACTCCCTCTTTCCTGAACACACCCATT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000053434.15
ENSMUST00000130367.8
ENSMUST00000179968.8
CDS-3UTR GCA 90 bp GTGTCTGGGAACAGTCTGTTCAAGAGCCAAGAGGAGCTAACACTTGCACGGGCATGTAGCTTCTCCTGGTaGCGCTCACACAACTTCATG +
Preference number: 4 (lower is better)
Translates to: VSGNSLFKSQEELTLARACSFSW*RSHNFM
Trigger: CATGAAGTTGTGTGAGCGGCACCAGGAGAAGCTACA...TGCCCGTGCAAGTGTTAGCTCCTCTTGGCTCTTGAACAGACTGTTCCCAGACAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000053434.15
ENSMUST00000130367.8
ENSMUST00000179968.8
CDS-3UTR GCA 90 bp AGGGACAAGACAAATGGGTGTGTTCAGGAAAGAGGGAGTCATTTGGTCTTCAGATTTCTCCACCAGGACTaGAGTGTGGGGGCGGTGCTC +
Preference number: 4 (lower is better)
Translates to: RDKTNGCVQERGSHLVFRFLHQD*SVGAVL
Trigger: GAGCACCGCCCCCACACTGCAGTCCTGGTGGAGAAA...TCTGAAGACCAAATGACTCCCTCTTTCCTGAACACACCCATTTGTCTTGTCCCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000053434.15
ENSMUST00000130367.8
ENSMUST00000179968.8
CDS-3UTR GCA 90 bp CACCAAGATCCAGTGTCTGGGAACAGTCTGTTCAAGAGCCAAGAGGAGCTAACATACTGCCTCTGCTCCTaGAGCTTTGTCAGTGCAGCC +
Preference number: 4 (lower is better)
Translates to: HQDPVSGNSLFKSQEELTYCLCS*SFVSAA
Trigger: GGCTGCACTGACAAAGCTGCAGGAGCAGAGGCAGTA...TGTTAGCTCCTCTTGGCTCTTGAACAGACTGTTCCCAGACACTGGATCTTGGTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000053434.15
ENSMUST00000130367.8
ENSMUST00000179968.8
CDS-3UTR GCA 90 bp CTCCGAGGCCACCAAGATCCAGTGTCTGGGAACAGTCTGTTCAAGAGCCAAGAGACAATGTACTGCCTCTaGTCCTGCAGCTTTGTCAGT +
Preference number: 4 (lower is better)
Translates to: LRGHQDPVSGNSLFKSQETMYCL*SCSFVS
Trigger: ACTGACAAAGCTGCAGGAGCAGAGGCAGTACATTGT...CTCTTGGCTCTTGAACAGACTGTTCCCAGACACTGGATCTTGGTGGCCTCGGAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000053434.15
ENSMUST00000123715.8
ENSMUST00000130367.8
ENSMUST00000179968.8
CDS-3UTR GCA 90 bp GCCAAGGCCCTGCTCAACAAAGAACACAGGGACAAGACAAATGGGTGTGTTCAGTCCGCCACAATGTACTaGCTCTGCTCCTGCAGCTTT +
Preference number: 4 (lower is better)
Translates to: AKALLNKEHRDKTNGCVQSATMY*LCSCSF
Trigger: AAAGCTGCAGGAGCAGAGGCAGTACATTGTGGCGGA...CTGAACACACCCATTTGTCTTGTCCCTGTGTTCTTTGTTGAGCAGGGCCTTGGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000053434.15
ENSMUST00000130367.8
ENSMUST00000179968.8
CDS-3UTR GCA 90 bp AAAAACAGCTTCAGATGTGATGGAAAGTCTACCTGTGGGCACTGGCTAACAACTTGCAGCTGGCTGTCGTaGCTTGCCCTCCAGCTCGGA +
Preference number: 4 (lower is better)
Translates to: KNSFRCDGKSTCGHWLTTCSWLS*LALQLG
Trigger: TCCGAGCTGGAGGGCAAGGCACGACAGCCAGCTGCA...AGTTGTTAGCCAGTGCCCACAGGTAGACTTTCCATCACATCTGAAGCTGTTTTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000053434.15
ENSMUST00000130367.8
ENSMUST00000179968.8
CDS-3UTR GCA 90 bp AGAACACAGGGACAAGACAAATGGGTGTGTTCAGGAAAGAGGGAGTCATTTGGTAGCTTGCCCTGGAACTaGCTCAGGCCTCGCTGCAGA +
Preference number: 4 (lower is better)
Translates to: RTQGQDKWVCSGKRESFGSLPWN*LRPRCR
Trigger: TCTGCAGCGAGGCCTGAGGCAGTTCCAGGGCAAGCT...ACCAAATGACTCCCTCTTTCCTGAACACACCCATTTGTCTTGTCCCTGTGTTCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000053434.15
ENSMUST00000130367.8
ENSMUST00000179968.8
CDS-3UTR GCA 90 bp ACTTCGAGGACAGCAAAAACAGCTTCAGATGTGATGGAAAGTCTACCTGTGGGCAGTCTCTCAGCAGCTTaGCCTGGAACTGCCTCAGGC +
Preference number: 4 (lower is better)
Translates to: TSRTAKTASDVMESLPVGSLSAA*PGTASG
Trigger: GCCTGAGGCAGTTCCAGGGCAAGCTGCTGAGAGACT...GCCCACAGGTAGACTTTCCATCACATCTGAAGCTGTTTTTGCTGTCCTCGAAGT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000053434.15
ENSMUST00000130367.8
ENSMUST00000179968.8
CDS-3UTR GCA 90 bp CCGAGGCCACCAAGATCCAGTGTCTGGGAACAGTCTGTTCAAGAGCCAAGAGGAGAGTTCCTGGGACTCTaGATTGGTGAATGTCACAGT +
Preference number: 4 (lower is better)
Translates to: PRPPRSSVWEQSVQEPRGEFLGL*IGECHS
Trigger: ACTGTGACATTCACCAATGCAGAGTCCCAGGAACTC...TCCTCTTGGCTCTTGAACAGACTGTTCCCAGACACTGGATCTTGGTGGCCTCGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000053434.15
ENSMUST00000130367.8
ENSMUST00000179968.8
CDS-3UTR CCA 90 bp ATCCCAGAGAAGGGAAGTTTCCATGGGTGTGGGATCCAGGTAATCTTTCTTCATGGAGCTGCTCCAAGGTaGCCAGCTGGTCTAGCAGGT +
Preference number: 4 (lower is better)
Translates to: IPEKGSFHGCGIQVIFLHGAAPR*PAGLAG
Trigger: ACCTGCTAGACCAGCTGGCCACCTTGGAGCAGCTCC...ATGAAGAAAGATTACCTGGATCCCACACCCATGGAAACTTCCCTTCTCTGGGAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000053434.15
ENSMUST00000130367.8
ENSMUST00000179968.8
CDS-3UTR CCA 90 bp AGGGACAAGACAAATGGGTGTGTTCAGGAAAGAGGGAGTCATTTGGTCTTCAGACATCAGCTCTGCAGCTaGCTGTCGTGCCTTGCCCTC +
Preference number: 4 (lower is better)
Translates to: RDKTNGCVQERGSHLVFRHQLCS*LSCLAL
Trigger: GAGGGCAAGGCACGACAGCCAGCTGCAGAGCTGATG...TCTGAAGACCAAATGACTCCCTCTTTCCTGAACACACCCATTTGTCTTGTCCCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000053434.15
ENSMUST00000130367.8
ENSMUST00000179968.8
CDS-3UTR CCA 90 bp GTGTCTGGGAACAGTCTGTTCAAGAGCCAAGAGGAGCTAACACTTGCACGGGCACCAGAACTTCTTCCGTaGGTACTTGTTGGCGAAGTC +
Preference number: 4 (lower is better)
Translates to: VSGNSLFKSQEELTLARAPELLP*VLVGEV
Trigger: GACTTCGCCAACAAGTACCCACGGAAGAAGTTCTGG...TGCCCGTGCAAGTGTTAGCTCCTCTTGGCTCTTGAACAGACTGTTCCCAGACAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000053434.15
ENSMUST00000130367.8
ENSMUST00000179968.8
CDS-3UTR CCA 90 bp CAGCATGTGATGCATACGAAGTGTTCAGTCTCGAGACGCTGTGGTGACTCCGAGCCAGAACTTCTTCCGTaGGTACTTGTTGGCGAAGTC +
Preference number: 4 (lower is better)
Translates to: QHVMHTKCSVSRRCGDSEPELLP*VLVGEV
Trigger: GACTTCGCCAACAAGTACCCACGGAAGAAGTTCTGG...CTCGGAGTCACCACAGCGTCTCGAGACTGAACACTTCGTATGCATCACATGCTG
52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000053434.15
ENSMUST00000123715.8
ENSMUST00000130367.8
ENSMUST00000179968.8
CDS-3UTR CCA 90 bp AGGGACAAGACAAATGGGTGTGTTCAGGAAAGAGGGAGTCATTTGGTCTTCAGACCACACACCATCTTCTaGTCGCAGGGAGAGGTCCCC +
Preference number: 4 (lower is better)
Translates to: RDKTNGCVQERGSHLVFRPHTIF*SQGEVP
Trigger: GGGGACCTCTCCCTGCGACCAGAAGATGGTGTGTGG...TCTGAAGACCAAATGACTCCCTCTTTCCTGAACACACCCATTTGTCTTGTCCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000053434.15
ENSMUST00000130367.8
ENSMUST00000179968.8
CDS-3UTR TCA 90 bp CAGCATGTGATGCATACGAAGTGTTCAGTCTCGAGACGCTGTGGTGACTCCGAGTTCCTCTTCCCCCAGTaGTTCGTCTTCTTCATCTGT +
Preference number: 4 (lower is better)
Translates to: QHVMHTKCSVSRRCGDSEFLFPQ*FVFFIC
Trigger: ACAGATGAAGAAGACGAATCACTGGGGGAAGAGGAA...CTCGGAGTCACCACAGCGTCTCGAGACTGAACACTTCGTATGCATCACATGCTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000053434.15
ENSMUST00000130367.8
ENSMUST00000179968.8
CDS-3UTR GCA 90 bp CAGCATGTGATGCATACGAAGTGTTCAGTCTCGAGACGCTGTGGTGACTCCGAGACAATGTACTGCCTCTaGTCCTGCAGCTTTGTCAGT +
Preference number: 4 (lower is better)
Translates to: QHVMHTKCSVSRRCGDSETMYCL*SCSFVS
Trigger: ACTGACAAAGCTGCAGGAGCAGAGGCAGTACATTGT...CTCGGAGTCACCACAGCGTCTCGAGACTGAACACTTCGTATGCATCACATGCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000053434.15
ENSMUST00000123715.8
ENSMUST00000130367.8
ENSMUST00000179968.8
CDS-3UTR GCA 90 bp AGAACACAGGGACAAGACAAATGGGTGTGTTCAGGAAAGAGGGAGTCATTTGGTTCTCAGCAGAAGGCGTaGTCCTGGCCACTTGAGCCA +
Preference number: 4 (lower is better)
Translates to: RTQGQDKWVCSGKRESFGSQQKA*SWPLEP
Trigger: TGGCTCAAGTGGCCAGGAGCACGCCTTCTGCTGAGA...ACCAAATGACTCCCTCTTTCCTGAACACACCCATTTGTCTTGTCCCTGTGTTCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000053434.15
ENSMUST00000130367.8
ENSMUST00000179968.8
CDS-3UTR CCA 90 bp ACCTCCTGGTCAAGAGCAAGATGTTCGGGTTGTTTTAAAAACTTCCTTCACAAGGCGGGCGAGCTCTCCTaGCTGTCTGCCATTGTCCAC +
Preference number: 4 (lower is better)
Translates to: TSWSRARCSGCFKNFLHKAGELS*LSAIVH
Trigger: GTGGACAATGGCAGACAGCCAGGAGAGCTCGCCCGC...CTTGTGAAGGAAGTTTTTAAAACAACCCGAACATCTTGCTCTTGACCAGGAGGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000053434.15
ENSMUST00000130367.8
ENSMUST00000179968.8
CDS-3UTR CCA 90 bp CTCCGAGGCCACCAAGATCCAGTGTCTGGGAACAGTCTGTTCAAGAGCCAAGAGCGCTTCTTTAGAAACTaGTGGCCCTGCTTAAATTCC +
Preference number: 4 (lower is better)
Translates to: LRGHQDPVSGNSLFKSQERFFRN*WPCLNS
Trigger: GGAATTTAAGCAGGGCCACCAGTTTCTAAAGAAGCG...CTCTTGGCTCTTGAACAGACTGTTCCCAGACACTGGATCTTGGTGGCCTCGGAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000053434.15
ENSMUST00000123715.8
ENSMUST00000130367.8
ENSMUST00000179968.8
CDS-3UTR CCA 90 bp ATCCCAGAGAAGGGAAGTTTCCATGGGTGTGGGATCCAGGTAATCTTTCTTCATCAGAAGGCGTGCTCCTaGCCACTTGAGCCACAGGAA +
Preference number: 4 (lower is better)
Translates to: IPEKGSFHGCGIQVIFLHQKACS*PLEPQE
Trigger: TTCCTGTGGCTCAAGTGGCCAGGAGCACGCCTTCTG...ATGAAGAAAGATTACCTGGATCCCACACCCATGGAAACTTCCCTTCTCTGGGAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000053434.15
ENSMUST00000130367.8
ENSMUST00000179968.8
CDS-3UTR TCA 90 bp GCCAAGGCCCTGCTCAACAAAGAACACAGGGACAAGACAAATGGGTGTGTTCAGTTCCTCTTCCCCCAGTaGTTCGTCTTCTTCATCTGT +
Preference number: 4 (lower is better)
Translates to: AKALLNKEHRDKTNGCVQFLFPQ*FVFFIC
Trigger: ACAGATGAAGAAGACGAATCACTGGGGGAAGAGGAA...CTGAACACACCCATTTGTCTTGTCCCTGTGTTCTTTGTTGAGCAGGGCCTTGGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000053434.15
ENSMUST00000130367.8
ENSMUST00000179968.8
CDS-3UTR TCA 90 bp TGGTCAAGAGCAAGATGTTCGGGTTGTTTTAAAAACTTCCTTCACAAGGACTGCGTGCTCCTGGCCACTTaGGCCACAGGAAGGGAACCA +
Preference number: 4 (lower is better)
Translates to: WSRARCSGCFKNFLHKDCVLLAT*ATGREP
Trigger: TGGTTCCCTTCCTGTGGCTCAAGTGGCCAGGAGCAC...GCAGTCCTTGTGAAGGAAGTTTTTAAAACAACCCGAACATCTTGCTCTTGACCA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000053434.15
ENSMUST00000130367.8
ENSMUST00000179968.8
CDS-3UTR GCA 90 bp GTGTTCAGGAAAGAGGGAGTCATTTGGTCTTCAGAGCAGGAAACCTCAGAGGAATCCGCCACAATGTACTaGCTCTGCTCCTGCAGCTTT +
Preference number: 4 (lower is better)
Translates to: VFRKEGVIWSSEQETSEESATMY*LCSCSF
Trigger: AAAGCTGCAGGAGCAGAGGCAGTACATTGTGGCGGA...TTCCTCTGAGGTTTCCTGCTCTGAAGACCAAATGACTCCCTCTTTCCTGAACAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000053434.15
ENSMUST00000130367.8
ENSMUST00000179968.8
CDS-3UTR GCA 90 bp GCCAAGGCCCTGCTCAACAAAGAACACAGGGACAAGACAAATGGGTGTGTTCAGGAGTTCCTGGGACTCTaGATTGGTGAATGTCACAGT +
Preference number: 4 (lower is better)
Translates to: AKALLNKEHRDKTNGCVQEFLGL*IGECHS
Trigger: ACTGTGACATTCACCAATGCAGAGTCCCAGGAACTC...CTGAACACACCCATTTGTCTTGTCCCTGTGTTCTTTGTTGAGCAGGGCCTTGGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000053434.15
ENSMUST00000130367.8
ENSMUST00000179968.8
CDS-3UTR CCA 90 bp GTGATGCATACGAAGTGTTCAGTCTCGAGACGCTGTGGTGACTCCGAGGCCACCCTTAGGGTGTTCAAGTaGTTCAGAATTTTCTCTCTG +
Preference number: 4 (lower is better)
Translates to: VMHTKCSVSRRCGDSEATLRVFK*FRIFSL
Trigger: CAGAGAGAAAATTCTGAACCACTTGAACACCCTAAG...GGTGGCCTCGGAGTCACCACAGCGTCTCGAGACTGAACACTTCGTATGCATCAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000053434.15
ENSMUST00000123715.8
ENSMUST00000130367.8
ENSMUST00000179968.8
CDS-3UTR CCA 90 bp GTGTTCAGGAAAGAGGGAGTCATTTGGTCTTCAGAGCAGGAAACCTCAGAGGAATCACAGTCAAACTGCTaGGGGAGCAGACAGTCACTC +
Preference number: 4 (lower is better)
Translates to: VFRKEGVIWSSEQETSEESQSNC*GSRQSL
Trigger: GAGTGACTGTCTGCTCCCCCAGCAGTTTGACTGTGA...TTCCTCTGAGGTTTCCTGCTCTGAAGACCAAATGACTCCCTCTTTCCTGAACAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000053434.15
ENSMUST00000130367.8
ENSMUST00000179968.8
3UTR CAA 72 bp TTTAAGACACCAGGAAAGGTAGGCAACAGAGTGGTTTaGGGCACGGGGTACCTCAACTTCGAGGACAGCAAA +
Preference number: 4 (lower is better)
Translates to: FKTPGKVGNRVV*GTGYLNFEDSK
Trigger: TTTGCTGTCCTCGAAGTTGAGGTACCCCGTGCCCAAAACCACTCTGTTGCCTACCTTTCCTGGTGTCTTAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000053434.15
ENSMUST00000130367.8
ENSMUST00000179968.8
CDS-3UTR TCA 90 bp TGGTCAAGAGCAAGATGTTCGGGTTGTTTTAAAAACTTCCTTCACAAGGACTGCCCTCCAGCTCGGAGATaGCCAGAGTCAACCGGTCAA +
Preference number: 4 (lower is better)
Translates to: WSRARCSGCFKNFLHKDCPPARR*PESTGQ
Trigger: TTGACCGGTTGACTCTGGTCATCTCCGAGCTGGAGG...GCAGTCCTTGTGAAGGAAGTTTTTAAAACAACCCGAACATCTTGCTCTTGACCA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000053434.15
ENSMUST00000130367.8
ENSMUST00000179968.8
CDS-3UTR TCA 90 bp GGAACCTTCCTCCATTATAGTTTTGGGATCCCAGAGAAGGGAAGTTTCCATGGGACTGTGGGTCCAGGGTaGCGCTTACTGTCTTATACT +
Preference number: 4 (lower is better)
Translates to: GTFLHYSFGIPEKGSFHGTVGPG*RLLSYT
Trigger: AGTATAAGACAGTAAGCGTCACCCTGGACCCACAGT...CCCATGGAAACTTCCCTTCTCTGGGATCCCAAAACTATAATGGAGGAAGGTTCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000053434.15
ENSMUST00000130367.8
ENSMUST00000179968.8
CDS-3UTR TCA 90 bp GGAACCTTCCTCCATTATAGTTTTGGGATCCCAGAGAAGGGAAGTTTCCATGGGCTCTTCTTCATCCTCTaGCCAGCCTTCTCTCTCCAA +
Preference number: 4 (lower is better)
Translates to: GTFLHYSFGIPEKGSFHGLFFIL*PAFSLQ
Trigger: TTGGAGAGAGAAGGCTGGTCAGAGGATGAAGAAGAG...CCCATGGAAACTTCCCTTCTCTGGGATCCCAAAACTATAATGGAGGAAGGTTCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000053434.15
ENSMUST00000130367.8
ENSMUST00000179968.8
CDS-3UTR TCA 90 bp GTGTTCAGGAAAGAGGGAGTCATTTGGTCTTCAGAGCAGGAAACCTCAGAGGAACTCTTCTTCATCCTCTaGCCAGCCTTCTCTCTCCAA +
Preference number: 4 (lower is better)
Translates to: VFRKEGVIWSSEQETSEELFFIL*PAFSLQ
Trigger: TTGGAGAGAGAAGGCTGGTCAGAGGATGAAGAAGAG...TTCCTCTGAGGTTTCCTGCTCTGAAGACCAAATGACTCCCTCTTTCCTGAACAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000053434.15
ENSMUST00000130367.8
ENSMUST00000179968.8
CDS-3UTR GCA 90 bp GGAACCTTCCTCCATTATAGTTTTGGGATCCCAGAGAAGGGAAGTTTCCATGGGTATCACTTGTGCAGCTaGGACAGAAGACATGGCCAC +
Preference number: 4 (lower is better)
Translates to: GTFLHYSFGIPEKGSFHGYHLCS*DRRHGH
Trigger: GTGGCCATGTCTTCTGTCGCAGCTGCACAAGTGATA...CCCATGGAAACTTCCCTTCTCTGGGATCCCAAAACTATAATGGAGGAAGGTTCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000053434.15
ENSMUST00000130367.8
ENSMUST00000179968.8
CDS-3UTR GCA 90 bp GGAACCTTCCTCCATTATAGTTTTGGGATCCCAGAGAAGGGAAGTTTCCATGGGTGTAGCTTCTCCTGGTaGCGCTCACACAACTTCATG +
Preference number: 4 (lower is better)
Translates to: GTFLHYSFGIPEKGSFHGCSFSW*RSHNFM
Trigger: CATGAAGTTGTGTGAGCGGCACCAGGAGAAGCTACA...CCCATGGAAACTTCCCTTCTCTGGGATCCCAAAACTATAATGGAGGAAGGTTCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000053434.15
ENSMUST00000130367.8
ENSMUST00000179968.8
CDS-3UTR GCA 90 bp CATGTGATGCATACGAAGTGTTCAGTCTCGAGACGCTGTGGTGACTCCGAGGCCTCACACACAACAGTTTaGCATCATCTTCACAGTAGT +
Preference number: 4 (lower is better)
Translates to: HVMHTKCSVSRRCGDSEASHTTV*HHLHSS
Trigger: ACTACTGTGAAGATGATGGCAAACTGTTGTGTGTGA...GGCCTCGGAGTCACCACAGCGTCTCGAGACTGAACACTTCGTATGCATCACATG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000053434.15
ENSMUST00000123715.8
ENSMUST00000130367.8
ENSMUST00000179968.8
CDS-3UTR GCA 90 bp CCGAGGCCACCAAGATCCAGTGTCTGGGAACAGTCTGTTCAAGAGCCAAGAGGATCACACACAACAGTTTaGCATCATCTTCACAGTAGT +
Preference number: 4 (lower is better)
Translates to: PRPPRSSVWEQSVQEPRGSHTTV*HHLHSS
Trigger: ACTACTGTGAAGATGATGGCAAACTGTTGTGTGTGA...TCCTCTTGGCTCTTGAACAGACTGTTCCCAGACACTGGATCTTGGTGGCCTCGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000053434.15
ENSMUST00000123715.8
ENSMUST00000130367.8
ENSMUST00000179968.8
CDS-3UTR GCA 90 bp AGAACACAGGGACAAGACAAATGGGTGTGTTCAGGAAAGAGGGAGTCATTTGGTTCCGCCACAATGTACTaGCTCTGCTCCTGCAGCTTT +
Preference number: 4 (lower is better)
Translates to: RTQGQDKWVCSGKRESFGSATMY*LCSCSF
Trigger: AAAGCTGCAGGAGCAGAGGCAGTACATTGTGGCGGA...ACCAAATGACTCCCTCTTTCCTGAACACACCCATTTGTCTTGTCCCTGTGTTCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000053434.15
ENSMUST00000130367.8
ENSMUST00000179968.8
CDS-3UTR GCA 90 bp CACCAAGATCCAGTGTCTGGGAACAGTCTGTTCAAGAGCCAAGAGGAGCTAACATGCCTCAGGCCTCGCTaGAGAGAAAGAAGTTTATCT +
Preference number: 4 (lower is better)
Translates to: HQDPVSGNSLFKSQEELTCLRPR*RERSLS
Trigger: AGATAAACTTCTTTCTCTGCAGCGAGGCCTGAGGCA...TGTTAGCTCCTCTTGGCTCTTGAACAGACTGTTCCCAGACACTGGATCTTGGTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000053434.15
ENSMUST00000130367.8
ENSMUST00000179968.8
CDS-3UTR GCA 90 bp AATGGGTGTGTTCAGGAAAGAGGGAGTCATTTGGTCTTCAGAGCAGGAAACCTCTGGCCACTCCCACCATaGAGCTTTCCTGAACTTCTT +
Preference number: 4 (lower is better)
Translates to: NGCVQERGSHLVFRAGNLWPLPP*SFPELL
Trigger: AAGAAGTTCAGGAAAGCTGCATGGTGGGAGTGGCCA...GAGGTTTCCTGCTCTGAAGACCAAATGACTCCCTCTTTCCTGAACACACCCATT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000053434.15
ENSMUST00000130367.8
ENSMUST00000179968.8
CDS-3UTR CCA 90 bp CATGTGATGCATACGAAGTGTTCAGTCTCGAGACGCTGTGGTGACTCCGAGGCCCTTAGGGTGTTCAAGTaGTTCAGAATTTTCTCTCTG +
Preference number: 4 (lower is better)
Translates to: HVMHTKCSVSRRCGDSEALRVFK*FRIFSL
Trigger: CAGAGAGAAAATTCTGAACCACTTGAACACCCTAAG...GGCCTCGGAGTCACCACAGCGTCTCGAGACTGAACACTTCGTATGCATCACATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000053434.15
ENSMUST00000123715.8
ENSMUST00000130367.8
ENSMUST00000179968.8
CDS-3UTR CCA 90 bp CCGAGGCCACCAAGATCCAGTGTCTGGGAACAGTCTGTTCAAGAGCCAAGAGGACTTAGGGTGTTCAAGTaGTTCAGAATTTTCTCTCTG +
Preference number: 4 (lower is better)
Translates to: PRPPRSSVWEQSVQEPRGLRVFK*FRIFSL
Trigger: CAGAGAGAAAATTCTGAACCACTTGAACACCCTAAG...TCCTCTTGGCTCTTGAACAGACTGTTCCCAGACACTGGATCTTGGTGGCCTCGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000053434.15
ENSMUST00000123715.8
ENSMUST00000130367.8
ENSMUST00000179968.8
CDS-3UTR TCA 90 bp AGAACACAGGGACAAGACAAATGGGTGTGTTCAGGAAAGAGGGAGTCATTTGGTGCTTCTCCCTTGGCTTaGAAGCCCTGGATTTTGTCT +
Preference number: 4 (lower is better)
Translates to: RTQGQDKWVCSGKRESFGASPLA*KPWILS
Trigger: AGACAAAATCCAGGGCTTTCAAGCCAAGGGAGAAGC...ACCAAATGACTCCCTCTTTCCTGAACACACCCATTTGTCTTGTCCCTGTGTTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000053434.15
ENSMUST00000130367.8
ENSMUST00000179968.8
CDS-3UTR TCA 90 bp AGAACACAGGGACAAGACAAATGGGTGTGTTCAGGAAAGAGGGAGTCATTTGGTCTCTTCTTCATCCTCTaGCCAGCCTTCTCTCTCCAA +
Preference number: 4 (lower is better)
Translates to: RTQGQDKWVCSGKRESFGLFFIL*PAFSLQ
Trigger: TTGGAGAGAGAAGGCTGGTCAGAGGATGAAGAAGAG...ACCAAATGACTCCCTCTTTCCTGAACACACCCATTTGTCTTGTCCCTGTGTTCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000053434.15
ENSMUST00000130367.8
ENSMUST00000179968.8
CDS-3UTR GCA 90 bp ACTTCGAGGACAGCAAAAACAGCTTCAGATGTGATGGAAAGTCTACCTGTGGGCCTGCAGCTTTGTCAGTaGAGCCAGAATATCAGCTTC +
Preference number: 4 (lower is better)
Translates to: TSRTAKTASDVMESLPVGLQLCQ*SQNISF
Trigger: GAAGCTGATATTCTGGCTGCACTGACAAAGCTGCAG...GCCCACAGGTAGACTTTCCATCACATCTGAAGCTGTTTTTGCTGTCCTCGAAGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000053434.15
ENSMUST00000130367.8
ENSMUST00000179968.8
CDS-3UTR GCA 90 bp AATGGGTGTGTTCAGGAAAGAGGGAGTCATTTGGTCTTCAGAGCAGGAAACCTCCTGCAGCTTTGTCAGTaGAGCCAGAATATCAGCTTC +
Preference number: 4 (lower is better)
Translates to: NGCVQERGSHLVFRAGNLLQLCQ*SQNISF
Trigger: GAAGCTGATATTCTGGCTGCACTGACAAAGCTGCAG...GAGGTTTCCTGCTCTGAAGACCAAATGACTCCCTCTTTCCTGAACACACCCATT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000053434.15
ENSMUST00000130367.8
ENSMUST00000179968.8
CDS-3UTR GCA 90 bp CCTTCCTCCATTATAGTTTTGGGATCCCAGAGAAGGGAAGTTTCCATGGGTGTGTGCCTCAGGCCTCGCTaGAGAGAAAGAAGTTTATCT +
Preference number: 4 (lower is better)
Translates to: PSSIIVLGSQRREVSMGVCLRPR*RERSLS
Trigger: AGATAAACTTCTTTCTCTGCAGCGAGGCCTGAGGCA...CACACCCATGGAAACTTCCCTTCTCTGGGATCCCAAAACTATAATGGAGGAAGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000053434.15
ENSMUST00000130367.8
ENSMUST00000179968.8
CDS-3UTR GCA 90 bp AATGGGTGTGTTCAGGAAAGAGGGAGTCATTTGGTCTTCAGAGCAGGAAACCTCGAGTTCCTGGGACTCTaGATTGGTGAATGTCACAGT +
Preference number: 4 (lower is better)
Translates to: NGCVQERGSHLVFRAGNLEFLGL*IGECHS
Trigger: ACTGTGACATTCACCAATGCAGAGTCCCAGGAACTC...GAGGTTTCCTGCTCTGAAGACCAAATGACTCCCTCTTTCCTGAACACACCCATT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000053434.15
ENSMUST00000130367.8
ENSMUST00000179968.8
CDS-3UTR TCA 90 bp ACCTCCTGGTCAAGAGCAAGATGTTCGGGTTGTTTTAAAAACTTCCTTCACAAGGGGACTCTGCATTGGTaGATGTCACAGTGCCACCTT +
Preference number: 4 (lower is better)
Translates to: TSWSRARCSGCFKNFLHKGTLHW*MSQCHL
Trigger: AAGGTGGCACTGTGACATTCACCAATGCAGAGTCCC...CTTGTGAAGGAAGTTTTTAAAACAACCCGAACATCTTGCTCTTGACCAGGAGGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000053434.15
ENSMUST00000130367.8
ENSMUST00000179968.8
CDS-3UTR GCA 90 bp AGAACACAGGGACAAGACAAATGGGTGTGTTCAGGAAAGAGGGAGTCATTTGGTTGCCTCAGGCCTCGCTaGAGAGAAAGAAGTTTATCT +
Preference number: 4 (lower is better)
Translates to: RTQGQDKWVCSGKRESFGCLRPR*RERSLS
Trigger: AGATAAACTTCTTTCTCTGCAGCGAGGCCTGAGGCA...ACCAAATGACTCCCTCTTTCCTGAACACACCCATTTGTCTTGTCCCTGTGTTCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000053434.15
ENSMUST00000130367.8
ENSMUST00000179968.8
CDS-3UTR CCA 90 bp GGAACCTTCCTCCATTATAGTTTTGGGATCCCAGAGAAGGGAAGTTTCCATGGGCGCTTCTTTAGAAACTaGTGGCCCTGCTTAAATTCC +
Preference number: 4 (lower is better)
Translates to: GTFLHYSFGIPEKGSFHGRFFRN*WPCLNS
Trigger: GGAATTTAAGCAGGGCCACCAGTTTCTAAAGAAGCG...CCCATGGAAACTTCCCTTCTCTGGGATCCCAAAACTATAATGGAGGAAGGTTCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000053434.15
ENSMUST00000130367.8
ENSMUST00000179968.8
CDS-3UTR CCA 90 bp ACTTCGAGGACAGCAAAAACAGCTTCAGATGTGATGGAAAGTCTACCTGTGGGCCGCTTCTTTAGAAACTaGTGGCCCTGCTTAAATTCC +
Preference number: 4 (lower is better)
Translates to: TSRTAKTASDVMESLPVGRFFRN*WPCLNS
Trigger: GGAATTTAAGCAGGGCCACCAGTTTCTAAAGAAGCG...GCCCACAGGTAGACTTTCCATCACATCTGAAGCTGTTTTTGCTGTCCTCGAAGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000053434.15
ENSMUST00000130367.8
ENSMUST00000179968.8
3UTR CAA 72 bp TTCTACCAGCACTCCAGGACACAAACTTACACGGCCTaGGAAACTTCTGTGGGTCATGACTACATCCATTCT +
Preference number: 4 (lower is better)
Translates to: FYQHSRTQTYTA*ETSVGHDYIHS
Trigger: AGAATGGATGTAGTCATGACCCACAGAAGTTTCCAAGGCCGTGTAAGTTTGTGTCCTGGAGTGCTGGTAGAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000053434.15
ENSMUST00000130367.8
ENSMUST00000179968.8
CDS-3UTR TCA 90 bp TGGTCAAGAGCAAGATGTTCGGGTTGTTTTAAAAACTTCCTTCACAAGGACTGCACTGTGGGTCCAGGGTaGCGCTTACTGTCTTATACT +
Preference number: 4 (lower is better)
Translates to: WSRARCSGCFKNFLHKDCTVGPG*RLLSYT
Trigger: AGTATAAGACAGTAAGCGTCACCCTGGACCCACAGT...GCAGTCCTTGTGAAGGAAGTTTTTAAAACAACCCGAACATCTTGCTCTTGACCA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000053434.15
ENSMUST00000130367.8
ENSMUST00000179968.8
CDS-3UTR CCA 90 bp CACCAAGATCCAGTGTCTGGGAACAGTCTGTTCAAGAGCCAAGAGGAGCTAACACTTAGGGTGTTCAAGTaGTTCAGAATTTTCTCTCTG +
Preference number: 4 (lower is better)
Translates to: HQDPVSGNSLFKSQEELTLRVFK*FRIFSL
Trigger: CAGAGAGAAAATTCTGAACCACTTGAACACCCTAAG...TGTTAGCTCCTCTTGGCTCTTGAACAGACTGTTCCCAGACACTGGATCTTGGTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000053434.15
ENSMUST00000130367.8
ENSMUST00000179968.8
3UTR CAA 72 bp AAGACAAATGGGTGTGTTCAGGAAAGAGGGAGTCATTaGGTCTTCAGAGCAGGAAACCTCAGAGGAAATGAG +
Preference number: 4 (lower is better)
Translates to: KTNGCVQERGSH*VFRAGNLRGNE
Trigger: CTCATTTCCTCTGAGGTTTCCTGCTCTGAAGACCAAATGACTCCCTCTTTCCTGAACACACCCATTTGTCTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000053434.15
ENSMUST00000130367.8
ENSMUST00000179968.8
CDS-3UTR GCA 90 bp ACTTCGAGGACAGCAAAAACAGCTTCAGATGTGATGGAAAGTCTACCTGTGGGCTCACACACAACAGTTTaGCATCATCTTCACAGTAGT +
Preference number: 4 (lower is better)
Translates to: TSRTAKTASDVMESLPVGSHTTV*HHLHSS
Trigger: ACTACTGTGAAGATGATGGCAAACTGTTGTGTGTGA...GCCCACAGGTAGACTTTCCATCACATCTGAAGCTGTTTTTGCTGTCCTCGAAGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000053434.15
ENSMUST00000130367.8
ENSMUST00000179968.8
CDS-3UTR GCA 90 bp ACCTCCTGGTCAAGAGCAAGATGTTCGGGTTGTTTTAAAAACTTCCTTCACAAGACAATGTACTGCCTCTaGTCCTGCAGCTTTGTCAGT +
Preference number: 4 (lower is better)
Translates to: TSWSRARCSGCFKNFLHKTMYCL*SCSFVS
Trigger: ACTGACAAAGCTGCAGGAGCAGAGGCAGTACATTGT...CTTGTGAAGGAAGTTTTTAAAACAACCCGAACATCTTGCTCTTGACCAGGAGGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000053434.15
ENSMUST00000130367.8
ENSMUST00000179968.8
CDS-3UTR GCA 90 bp TGGTCAAGAGCAAGATGTTCGGGTTGTTTTAAAAACTTCCTTCACAAGGACTGCTCACACACAACAGTTTaGCATCATCTTCACAGTAGT +
Preference number: 4 (lower is better)
Translates to: WSRARCSGCFKNFLHKDCSHTTV*HHLHSS
Trigger: ACTACTGTGAAGATGATGGCAAACTGTTGTGTGTGA...GCAGTCCTTGTGAAGGAAGTTTTTAAAACAACCCGAACATCTTGCTCTTGACCA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000053434.15
ENSMUST00000130367.8
ENSMUST00000179968.8
CDS GCA 90 bp CTGACGCCCCGGGTCTTGAACTTCTCCCTGCCCTCGGTGAGGAGCTaGTCCAAGGTGGCCAGCTGGTCTAGCAGGTGCTGCTCCCGCTTC +
Preference number: 5 (lower is better)
Translates to: LTPRVLNFSLPSVRS*SKVASWSSRCCSRF
Trigger: GAAGCGGGAGCAGCACCTGCTAGACCAGCTGGCCACCTTGGAGCAGCTCCTCACCGAGGGCAGGGAGAAGTTCAAGACCCGGGGCGTCAG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000053434.15
ENSMUST00000123715.8
ENSMUST00000124136.2
ENSMUST00000130367.8
ENSMUST00000130801.8
ENSMUST00000144182.8
ENSMUST00000179968.8
CDS-3UTR CAA 90 bp GGCGATGCCCACTCTCCGGGGCCGCAGCACCGGGAACAGCTGGGCCTCTGGGCTTTCTTCCGTGGGTACTaGTTGGCGAAGTCCTTGGTG +
Preference number: 5 (lower is better)
Translates to: GDAHSPGPQHREQLGLWAFFRGY*LAKSLV
Trigger: CACCAAGGACTTCGCCAACAAGTACCCACGGAAGAA...AGCCCAGAGGCCCAGCTGTTCCCGGTGCTGCGGCCCCGGAGAGTGGGCATCGCC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000124136.2
CDS-3UTR CAA 90 bp AGCACCGGGAACAGCTGGGCCTCTGGGCTCGTGTTGGCCCAGATACCTGAGGGGCCCCATGTGAAGCCCTaGCTGCCCAACACTCCTGGC +
Preference number: 5 (lower is better)
Translates to: STGNSWASGLVLAQIPEGPHVKP*LPNTPG
Trigger: GCCAGGAGTGTTGGGCAGCAAGGGCTTCACATGGGG...CCCCTCAGGTATCTGGGCCAACACGAGCCCAGAGGCCCAGCTGTTCCCGGTGCT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000124136.2
CDS GCA 90 bp GCGGGCAGACAGGCCGGTTCCCCGATATGGGGCGGATATCACTTGTaGAGCTGCGACAGAAGACATGGCCACAGTCGATGGTCACCGGGT +
Preference number: 5 (lower is better)
Translates to: AGRQAGSPIWGGYHL*SCDRRHGHSRWSPG
Trigger: ACCCGGTGACCATCGACTGTGGCCATGTCTTCTGTCGCAGCTGCACAAGTGATATCCGCCCCATATCGGGGAACCGGCCTGTCTGCCCGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000053434.15
ENSMUST00000123715.8
ENSMUST00000130367.8
ENSMUST00000130801.8
ENSMUST00000144182.8
ENSMUST00000179968.8
CDS GCA 90 bp GGCGAAGTCCTTGGTGTCCTGCATCAGCTCTGCAGCTGGCTGTCGTaGCTTGCCCTCCAGCTCGGAGATGACCAGAGTCAACCGGTCAAG +
Preference number: 5 (lower is better)
Translates to: GEVLGVLHQLCSWLS*LALQLGDDQSQPVK
Trigger: CTTGACCGGTTGACTCTGGTCATCTCCGAGCTGGAGGGCAAGGCACGACAGCCAGCTGCAGAGCTGATGCAGGACACCAAGGACTTCGCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000124136.2
CDS GCA 90 bp CCGTGGGTACTTGTTGGCGAAGTCCTTGGTGTCCTGCATCAGCTCTaGAGCTGGCTGTCGTGCCTTGCCCTCCAGCTCGGAGATGACCAG +
Preference number: 5 (lower is better)
Translates to: PWVLVGEVLGVLHQL*SWLSCLALQLGDDQ
Trigger: CTGGTCATCTCCGAGCTGGAGGGCAAGGCACGACAGCCAGCTGCAGAGCTGATGCAGGACACCAAGGACTTCGCCAACAAGTACCCACGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000124136.2
CDS-3UTR CAA 90 bp CCCAGATACCTGAGGGGGAGAGCCGAAGGGCCCACACACCATCTTCTGGTCGCAAAGTCTCTCAGCAGCTaGCCCTGGAACTGCCTCAGG +
Preference number: 5 (lower is better)
Translates to: PRYLRGRAEGPTHHLLVAKSLSS*PWNCLR
Trigger: CCTGAGGCAGTTCCAGGGCAAGCTGCTGAGAGACTT...TGCGACCAGAAGATGGTGTGTGGGCCCTTCGGCTCTCCCCCTCAGGTATCTGGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000124136.2
CDS GCA 90 bp CTGTGTAGTGCAGACATCCTGCATCAGCTCTGCAGCTGGCTGTCGTaGCTTGCCCTCCAGCTCGGAGATGACCAGAGTCAACCGGTCAAG +
Preference number: 5 (lower is better)
Translates to: LCSADILHQLCSWLS*LALQLGDDQSQPVK
Trigger: CTTGACCGGTTGACTCTGGTCATCTCCGAGCTGGAGGGCAAGGCACGACAGCCAGCTGCAGAGCTGATGCAGGATGTCTGCACTACACAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000053434.15
ENSMUST00000123715.8
ENSMUST00000130367.8
ENSMUST00000144182.8
CDS GCA 90 bp GAAGTCCTTGGTGTCCTGTGTAGTGCAGACATCCTGCATCAGCTCTaGAGCTGGCTGTCGTGCCTTGCCCTCCAGCTCGGAGATGACCAG +
Preference number: 5 (lower is better)
Translates to: EVLGVLCSADILHQL*SWLSCLALQLGDDQ
Trigger: CTGGTCATCTCCGAGCTGGAGGGCAAGGCACGACAGCCAGCTGCAGAGCTGATGCAGGATGTCTGCACTACACAGGACACCAAGGACTTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000053434.15
ENSMUST00000123715.8
ENSMUST00000130367.8
ENSMUST00000144182.8
CDS GCA 90 bp CAGAACTTCTTCCGTGGGTACTTGTTGGCGAAGTCCTTGGTGTCCTaGATCAGCTCTGCAGCTGGCTGTCGTGCCTTGCCCTCCAGCTCG +
Preference number: 5 (lower is better)
Translates to: QNFFRGYLLAKSLVS*ISSAAGCRALPSSS
Trigger: CGAGCTGGAGGGCAAGGCACGACAGCCAGCTGCAGAGCTGATGCAGGACACCAAGGACTTCGCCAACAAGTACCCACGGAAGAAGTTCTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000124136.2
CDS GCA 90 bp TACTTGTTGGCGAAGTCCTTGGTGTCTAGGCAGGTACACACAGCCTaGATCAGCTCTGCAGCTGGCTGTCGTGCCTTGCCCTCCAGCTCG +
Preference number: 5 (lower is better)
Translates to: YLLAKSLVSRQVHTA*ISSAAGCRALPSSS
Trigger: CGAGCTGGAGGGCAAGGCACGACAGCCAGCTGCAGAGCTGATGCAGGCTGTGTGTACCTGCCTAGACACCAAGGACTTCGCCAACAAGTA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000179968.8
CDS CCA 90 bp CCGCTCACACAACTTCATGTCCTGTGGCTCGCGGGCGAGCTCTCCTaGCTGTCTGCCATTGTCCACCTTCAGCCGTTCAATGTTCTCCAC +
Preference number: 5 (lower is better)
Translates to: PLTQLHVLWLAGELS*LSAIVHLQPFNVLH
Trigger: GTGGAGAACATTGAACGGCTGAAGGTGGACAATGGCAGACAGCCAGGAGAGCTCGCCCGCGAGCCACAGGACATGAAGTTGTGTGAGCGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000053434.15
ENSMUST00000123715.8
ENSMUST00000130367.8
ENSMUST00000130801.8
ENSMUST00000144182.8
ENSMUST00000179968.8
CDS-3UTR CAA 90 bp CATGTGATGCATACGAAGTGTTCAGTCTCGAGACGCTGTGGTGACTCCGAGGCCCGTGCTCCTGGCCACTaGAGCCACAGGAAGGGAACC +
Preference number: 5 (lower is better)
Translates to: HVMHTKCSVSRRCGDSEARAPGH*SHRKGT
Trigger: GGTTCCCTTCCTGTGGCTCAAGTGGCCAGGAGCACG...GGCCTCGGAGTCACCACAGCGTCTCGAGACTGAACACTTCGTATGCATCACATG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000053434.15
ENSMUST00000130367.8
ENSMUST00000179968.8
CDS GCA 90 bp TACTTGTTGGCGAAGTCCTTGGTGTCCTGTGTAGTGCAGACATCCTaGATCAGCTCTGCAGCTGGCTGTCGTGCCTTGCCCTCCAGCTCG +
Preference number: 5 (lower is better)
Translates to: YLLAKSLVSCVVQTS*ISSAAGCRALPSSS
Trigger: CGAGCTGGAGGGCAAGGCACGACAGCCAGCTGCAGAGCTGATGCAGGATGTCTGCACTACACAGGACACCAAGGACTTCGCCAACAAGTA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000053434.15
ENSMUST00000123715.8
ENSMUST00000130367.8
ENSMUST00000144182.8
CDS CCA 90 bp CTTGGTGTCCTGTGTAGTGCAGACATCCTGCATCAGCTCTGCAGCTaGCTGTCGTGCCTTGCCCTCCAGCTCGGAGATGACCAGAGTCAA +
Preference number: 5 (lower is better)
Translates to: LGVLCSADILHQLCS*LSCLALQLGDDQSQ
Trigger: TTGACTCTGGTCATCTCCGAGCTGGAGGGCAAGGCACGACAGCCAGCTGCAGAGCTGATGCAGGATGTCTGCACTACACAGGACACCAAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000053434.15
ENSMUST00000123715.8
ENSMUST00000130367.8
ENSMUST00000144182.8
CDS CCA 90 bp GTACTTGTTGGCGAAGTCCTTGGTGTCCTGCATCAGCTCTGCAGCTaGCTGTCGTGCCTTGCCCTCCAGCTCGGAGATGACCAGAGTCAA +
Preference number: 5 (lower is better)
Translates to: VLVGEVLGVLHQLCS*LSCLALQLGDDQSQ
Trigger: TTGACTCTGGTCATCTCCGAGCTGGAGGGCAAGGCACGACAGCCAGCTGCAGAGCTGATGCAGGACACCAAGGACTTCGCCAACAAGTAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000124136.2
CDS-3UTR CAA 90 bp TTGGCCGTGGCAGTGGGGAGATGGGTGGCAATGGATGTGATGTCCCTCTCTCTCTTCTTAAAGGGCTTCTaGCAGAGCGGGCAGACAGGC +
Preference number: 5 (lower is better)
Translates to: LAVAVGRWVAMDVMSLSLFLKGF*QSGQTG
Trigger: GCCTGTCTGCCCGCTCTGCAAGAAGCCCTTTAAGAA...GAGAGAGAGGGACATCACATCCATTGCCACCCATCTCCCCACTGCCACGGCCAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000053434.15
ENSMUST00000130367.8
ENSMUST00000179968.8
CDS-3UTR CAA 90 bp CGTGGCAGTGGGGAGATGGGTGGCAATGGATGTGATGTCCCTCTCTCTCCTCCTCTCTTCACAGAGTCTTaGGCCACTCCCACCATGCAG +
Preference number: 5 (lower is better)
Translates to: RGSGEMGGNGCDVPLSPPLFTES*ATPTMQ
Trigger: CTGCATGGTGGGAGTGGCCAAAGACTCTGTGAAGAG...AGGAGGAGAGAGAGGGACATCACATCCATTGCCACCCATCTCCCCACTGCCACG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000053434.15
ENSMUST00000130367.8
ENSMUST00000179968.8
CDS GCA 90 bp ACAACTTCATGTCCTGTGGCTCGCGGGCGAGCTCTCCTGGCTGTCTaGCATTGTCCACCTTCAGCCGTTCAATGTTCTCCACCAGACTTG +
Preference number: 5 (lower is better)
Translates to: TTSCPVARGRALLAV*HCPPSAVQCSPPDL
Trigger: CAAGTCTGGTGGAGAACATTGAACGGCTGAAGGTGGACAATGGCAGACAGCCAGGAGAGCTCGCCCGCGAGCCACAGGACATGAAGTTGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000053434.15
ENSMUST00000123715.8
ENSMUST00000130367.8
ENSMUST00000130801.8
ENSMUST00000144182.8
ENSMUST00000179968.8
CDS CCA 90 bp GCCAGCTGGTCTAGCAGGTGCTGCTCCCGCTTCTTTAGAAACTGGTaGCCCTGCTTAAATTCCGCCACAATGTACTGCCTCTGCTCCTGC +
Preference number: 5 (lower is better)
Translates to: ASWSSRCCSRFFRNW*PCLNSATMYCLCSC
Trigger: GCAGGAGCAGAGGCAGTACATTGTGGCGGAATTTAAGCAGGGCCACCAGTTTCTAAAGAAGCGGGAGCAGCACCTGCTAGACCAGCTGGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000053434.15
ENSMUST00000123715.8
ENSMUST00000130367.8
ENSMUST00000130801.8
ENSMUST00000144182.8
ENSMUST00000179968.8
CDS CCA 90 bp GTGGCCAGCTGGTCTAGCAGGTGCTGCTCCCGCTTCTTTAGAAACTaGTGGCCCTGCTTAAATTCCGCCACAATGTACTGCCTCTGCTCC +
Preference number: 5 (lower is better)
Translates to: VASWSSRCCSRFFRN*WPCLNSATMYCLCS
Trigger: GGAGCAGAGGCAGTACATTGTGGCGGAATTTAAGCAGGGCCACCAGTTTCTAAAGAAGCGGGAGCAGCACCTGCTAGACCAGCTGGCCAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000053434.15
ENSMUST00000123715.8
ENSMUST00000130367.8
ENSMUST00000130801.8
ENSMUST00000144182.8
ENSMUST00000179968.8
CDS-3UTR CAA 90 bp CCGAGGCCACCAAGATCCAGTGTCTGGGAACAGTCTGTTCAAGAGCCAAGAGGATGTTCTCCACCAGACTaGCTAGCTGCCACACGGGTC +
Preference number: 5 (lower is better)
Translates to: PRPPRSSVWEQSVQEPRGCSPPD*LAATRV
Trigger: GACCCGTGTGGCAGCTAGCAAGTCTGGTGGAGAACA...TCCTCTTGGCTCTTGAACAGACTGTTCCCAGACACTGGATCTTGGTGGCCTCGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000053434.15
ENSMUST00000123715.8
ENSMUST00000130367.8
ENSMUST00000179968.8
CDS-3UTR CAA 90 bp CCGAGGCCACCAAGATCCAGTGTCTGGGAACAGTCTGTTCAAGAGCCAAGAGGAAAGTCTCTCAGCAGCTaGCCCTGGAACTGCCTCAGG +
Preference number: 5 (lower is better)
Translates to: PRPPRSSVWEQSVQEPRGKSLSS*PWNCLR
Trigger: CCTGAGGCAGTTCCAGGGCAAGCTGCTGAGAGACTT...TCCTCTTGGCTCTTGAACAGACTGTTCCCAGACACTGGATCTTGGTGGCCTCGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000053434.15
ENSMUST00000123715.8
ENSMUST00000130367.8
ENSMUST00000179968.8
CDS-3UTR CAA 90 bp CGAGGCCACCAAGATCCAGTGTCTGGGAACAGTCTGTTCAAGAGCCAAGAGGAGAAGTCTCTCAGCAGCTaGCCCTGGAACTGCCTCAGG +
Preference number: 5 (lower is better)
Translates to: RGHQDPVSGNSLFKSQEEKSLSS*PWNCLR
Trigger: CCTGAGGCAGTTCCAGGGCAAGCTGCTGAGAGACTT...CTCCTCTTGGCTCTTGAACAGACTGTTCCCAGACACTGGATCTTGGTGGCCTCG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000053434.15
ENSMUST00000123715.8
ENSMUST00000130367.8
ENSMUST00000179968.8
CDS-3UTR CAA 90 bp GCCAAGGCCCTGCTCAACAAAGAACACAGGGACAAGACAAATGGGTGTGTTCAGCCCCATGTGAAGCCCTaGCTGCCCAACACTCCTGGC +
Preference number: 5 (lower is better)
Translates to: AKALLNKEHRDKTNGCVQPHVKP*LPNTPG
Trigger: GCCAGGAGTGTTGGGCAGCAAGGGCTTCACATGGGG...CTGAACACACCCATTTGTCTTGTCCCTGTGTTCTTTGTTGAGCAGGGCCTTGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000053434.15
ENSMUST00000130367.8
ENSMUST00000179968.8
CDS CCA 90 bp GAGGGATGGCTTTCCCAATCCAGAACTTCTTCCGTGGGTACTTGTTaGCGAAGTCCTTGGTGTCCTGCATCAGCTCTGCAGCTGGCTGTC +
Preference number: 5 (lower is better)
Translates to: EGWLSQSRTSSVGTC*RSPWCPASALQLAV
Trigger: GACAGCCAGCTGCAGAGCTGATGCAGGACACCAAGGACTTCGCCAACAAGTACCCACGGAAGAAGTTCTGGATTGGGAAAGCCATCCCTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000124136.2
CDS-3UTR CAA 90 bp CATGTGATGCATACGAAGTGTTCAGTCTCGAGACGCTGTGGTGACTCCGAGGCCTGGGGCGGATATCACTaGTGCAGCTGCGACAGAAGA +
Preference number: 5 (lower is better)
Translates to: HVMHTKCSVSRRCGDSEAWGGYH*CSCDRR
Trigger: TCTTCTGTCGCAGCTGCACAAGTGATATCCGCCCCA...GGCCTCGGAGTCACCACAGCGTCTCGAGACTGAACACTTCGTATGCATCACATG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000053434.15
ENSMUST00000123715.8
ENSMUST00000130367.8
ENSMUST00000179968.8
CDS-3UTR CAA 90 bp AGGCAGCATGTGATGCATACGAAGTGTTCAGTCTCGAGACGCTGTGGTGACTCCCCTGGCTGTCTGCCATaGTCCACCTTCAGCCGTTCA +
Preference number: 5 (lower is better)
Translates to: RQHVMHTKCSVSRRCGDSPGCLP*STFSRS
Trigger: TGAACGGCTGAAGGTGGACAATGGCAGACAGCCAGG...GGAGTCACCACAGCGTCTCGAGACTGAACACTTCGTATGCATCACATGCTGCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000053434.15
ENSMUST00000123715.8
ENSMUST00000130367.8
ENSMUST00000179968.8
CDS-3UTR CAA 90 bp CAGCATGTGATGCATACGAAGTGTTCAGTCTCGAGACGCTGTGGTGACTCCGAGCCTGGCTGTCTGCCATaGTCCACCTTCAGCCGTTCA +
Preference number: 5 (lower is better)
Translates to: QHVMHTKCSVSRRCGDSEPGCLP*STFSRS
Trigger: TGAACGGCTGAAGGTGGACAATGGCAGACAGCCAGG...CTCGGAGTCACCACAGCGTCTCGAGACTGAACACTTCGTATGCATCACATGCTG
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000053434.15
ENSMUST00000123715.8
ENSMUST00000130367.8
ENSMUST00000179968.8
CDS-3UTR CAA 90 bp CGAGGCCACCAAGATCCAGTGTCTGGGAACAGTCTGTTCAAGAGCCAAGAGGAGCTCTTCACAGAGTCTTaGGCCACTCCCACCATGCAG +
Preference number: 5 (lower is better)
Translates to: RGHQDPVSGNSLFKSQEELFTES*ATPTMQ
Trigger: CTGCATGGTGGGAGTGGCCAAAGACTCTGTGAAGAG...CTCCTCTTGGCTCTTGAACAGACTGTTCCCAGACACTGGATCTTGGTGGCCTCG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000053434.15
ENSMUST00000130367.8
ENSMUST00000179968.8
CDS CCA 90 bp TCCCAATCCAGAACTTCTTCCGTGGGTACTTGTTGGCGAAGTCCTTaGTGTCTAGGCAGGTACACACAGCCTGCATCAGCTCTGCAGCTG +
Preference number: 5 (lower is better)
Translates to: SQSRTSSVGTCWRSP*CLGRYTQPASALQL
Trigger: CAGCTGCAGAGCTGATGCAGGCTGTGTGTACCTGCCTAGACACCAAGGACTTCGCCAACAAGTACCCACGGAAGAAGTTCTGGATTGGGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000179968.8
CDS-3UTR CAA 90 bp GCCAAGGCCCTGCTCAACAAAGAACACAGGGACAAGACAAATGGGTGTGTTCAGTGTTCTCCACCAGACTaGCTAGCTGCCACACGGGTC +
Preference number: 5 (lower is better)
Translates to: AKALLNKEHRDKTNGCVQCSPPD*LAATRV
Trigger: GACCCGTGTGGCAGCTAGCAAGTCTGGTGGAGAACA...CTGAACACACCCATTTGTCTTGTCCCTGTGTTCTTTGTTGAGCAGGGCCTTGGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000053434.15
ENSMUST00000130367.8
ENSMUST00000179968.8
CDS-3UTR CAA 90 bp GTGATGCATACGAAGTGTTCAGTCTCGAGACGCTGTGGTGACTCCGAGGCCACCAGCTTCTCCCTTGGCTaGAAAGCCCTGGATTTTGTC +
Preference number: 5 (lower is better)
Translates to: VMHTKCSVSRRCGDSEATSFSLG*KALDFV
Trigger: GACAAAATCCAGGGCTTTCAAGCCAAGGGAGAAGCT...GGTGGCCTCGGAGTCACCACAGCGTCTCGAGACTGAACACTTCGTATGCATCAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000053434.15
ENSMUST00000123715.8
ENSMUST00000130367.8
ENSMUST00000179968.8
CDS-3UTR CAA 90 bp GTGATGCATACGAAGTGTTCAGTCTCGAGACGCTGTGGTGACTCCGAGGCCACCTCTGCTCCTGCAGCTTaGTCAGTGCAGCCAGAATAT +
Preference number: 5 (lower is better)
Translates to: VMHTKCSVSRRCGDSEATSAPAA*SVQPEY
Trigger: ATATTCTGGCTGCACTGACAAAGCTGCAGGAGCAGA...GGTGGCCTCGGAGTCACCACAGCGTCTCGAGACTGAACACTTCGTATGCATCAC
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000053434.15
ENSMUST00000123715.8
ENSMUST00000130367.8
ENSMUST00000179968.8
CDS-3UTR CAA 90 bp CATGTGATGCATACGAAGTGTTCAGTCTCGAGACGCTGTGGTGACTCCGAGGCCTTCTTCCGTGGGTACTaGTTGGCGAAGTCCTTGGTG +
Preference number: 5 (lower is better)
Translates to: HVMHTKCSVSRRCGDSEAFFRGY*LAKSLV
Trigger: CACCAAGGACTTCGCCAACAAGTACCCACGGAAGAA...GGCCTCGGAGTCACCACAGCGTCTCGAGACTGAACACTTCGTATGCATCACATG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000053434.15
ENSMUST00000123715.8
ENSMUST00000130367.8
ENSMUST00000179968.8
CDS-3UTR CAA 90 bp CCTTCCTCCATTATAGTTTTGGGATCCCAGAGAAGGGAAGTTTCCATGGGTGTGCCCCATGTGAAGCCCTaGCTGCCCAACACTCCTGGC +
Preference number: 5 (lower is better)
Translates to: PSSIIVLGSQRREVSMGVPHVKP*LPNTPG
Trigger: GCCAGGAGTGTTGGGCAGCAAGGGCTTCACATGGGG...CACACCCATGGAAACTTCCCTTCTCTGGGATCCCAAAACTATAATGGAGGAAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000053434.15
ENSMUST00000130367.8
ENSMUST00000179968.8
CDS-3UTR CAA 90 bp GGAACCTTCCTCCATTATAGTTTTGGGATCCCAGAGAAGGGAAGTTTCCATGGGCGTGCTCCTGGCCACTaGAGCCACAGGAAGGGAACC +
Preference number: 5 (lower is better)
Translates to: GTFLHYSFGIPEKGSFHGRAPGH*SHRKGT
Trigger: GGTTCCCTTCCTGTGGCTCAAGTGGCCAGGAGCACG...CCCATGGAAACTTCCCTTCTCTGGGATCCCAAAACTATAATGGAGGAAGGTTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000053434.15
ENSMUST00000130367.8
ENSMUST00000179968.8
CDS GCA 90 bp TGGTCTAGCAGGTGCTGCTCCCGCTTCTTTAGAAACTGGTGGCCCTaGTTAAATTCCGCCACAATGTACTGCCTCTGCTCCTGCAGCTTT +
Preference number: 5 (lower is better)
Translates to: WSSRCCSRFFRNWWP*LNSATMYCLCSCSF
Trigger: AAAGCTGCAGGAGCAGAGGCAGTACATTGTGGCGGAATTTAAGCAGGGCCACCAGTTTCTAAAGAAGCGGGAGCAGCACCTGCTAGACCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000053434.15
ENSMUST00000123715.8
ENSMUST00000130367.8
ENSMUST00000130801.8
ENSMUST00000144182.8
ENSMUST00000179968.8
CDS CCA 90 bp GAGGGATGGCTTTCCCAATCCAGAACTTCTTCCGTGGGTACTTGTTaGCGAAGTCCTTGGTGTCTAGGCAGGTACACACAGCCTGCATCA +
Preference number: 5 (lower is better)
Translates to: EGWLSQSRTSSVGTC*RSPWCLGRYTQPAS
Trigger: TGATGCAGGCTGTGTGTACCTGCCTAGACACCAAGGACTTCGCCAACAAGTACCCACGGAAGAAGTTCTGGATTGGGAAAGCCATCCCTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000179968.8
CDS-3UTR CAA 90 bp CTCCGAGGCCACCAAGATCCAGTGTCTGGGAACAGTCTGTTCAAGAGCCAAGAGTCTGCTCCTGCAGCTTaGTCAGTGCAGCCAGAATAT +
Preference number: 5 (lower is better)
Translates to: LRGHQDPVSGNSLFKSQESAPAA*SVQPEY
Trigger: ATATTCTGGCTGCACTGACAAAGCTGCAGGAGCAGA...CTCTTGGCTCTTGAACAGACTGTTCCCAGACACTGGATCTTGGTGGCCTCGGAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000053434.15
ENSMUST00000123715.8
ENSMUST00000130367.8
ENSMUST00000179968.8
CDS-3UTR CAA 90 bp CAGCATGTGATGCATACGAAGTGTTCAGTCTCGAGACGCTGTGGTGACTCCGAGTTCTTCCGTGGGTACTaGTTGGCGAAGTCCTTGGTG +
Preference number: 5 (lower is better)
Translates to: QHVMHTKCSVSRRCGDSEFFRGY*LAKSLV
Trigger: CACCAAGGACTTCGCCAACAAGTACCCACGGAAGAA...CTCGGAGTCACCACAGCGTCTCGAGACTGAACACTTCGTATGCATCACATGCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000053434.15
ENSMUST00000123715.8
ENSMUST00000130367.8
ENSMUST00000179968.8
CDS-3UTR CAA 90 bp AGGGACAAGACAAATGGGTGTGTTCAGGAAAGAGGGAGTCATTTGGTCTTCAGACCCCATGTGAAGCCCTaGCTGCCCAACACTCCTGGC +
Preference number: 5 (lower is better)
Translates to: RDKTNGCVQERGSHLVFRPHVKP*LPNTPG
Trigger: GCCAGGAGTGTTGGGCAGCAAGGGCTTCACATGGGG...TCTGAAGACCAAATGACTCCCTCTTTCCTGAACACACCCATTTGTCTTGTCCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000053434.15
ENSMUST00000130367.8
ENSMUST00000179968.8
CDS-3UTR CAA 90 bp GCCAAGGCCCTGCTCAACAAAGAACACAGGGACAAGACAAATGGGTGTGTTCAGCTCTTCACAGAGTCTTaGGCCACTCCCACCATGCAG +
Preference number: 5 (lower is better)
Translates to: AKALLNKEHRDKTNGCVQLFTES*ATPTMQ
Trigger: CTGCATGGTGGGAGTGGCCAAAGACTCTGTGAAGAG...CTGAACACACCCATTTGTCTTGTCCCTGTGTTCTTTGTTGAGCAGGGCCTTGGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000053434.15
ENSMUST00000130367.8
ENSMUST00000179968.8
CDS-3UTR CAA 90 bp GTGTCTGGGAACAGTCTGTTCAAGAGCCAAGAGGAGCTAACACTTGCACGGGCATCCTGGGACTCTGCATaGGTGAATGTCACAGTGCCA +
Preference number: 5 (lower is better)
Translates to: VSGNSLFKSQEELTLARASWDSA*VNVTVP
Trigger: TGGCACTGTGACATTCACCAATGCAGAGTCCCAGGA...TGCCCGTGCAAGTGTTAGCTCCTCTTGGCTCTTGAACAGACTGTTCCCAGACAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000053434.15
ENSMUST00000130367.8
ENSMUST00000179968.8
CDS GCA 90 bp TTGTCCACCTTCAGCCGTTCAATGTTCTCCACCAGACTTGCTAGCTaGCACACGGGTCGGATGTTCTCCTTCTTAAAGGGCTTCTTGCAG +
Preference number: 5 (lower is better)
Translates to: LSTFSRSMFSTRLAS*HTGRMFSFLKGFLQ
Trigger: CTGCAAGAAGCCCTTTAAGAAGGAGAACATCCGACCCGTGTGGCAGCTAGCAAGTCTGGTGGAGAACATTGAACGGCTGAAGGTGGACAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000053434.15
ENSMUST00000123715.8
ENSMUST00000130367.8
ENSMUST00000130801.8
ENSMUST00000144182.8
ENSMUST00000179968.8
CDS GCA 90 bp AGAAACTGGTGGCCCTGCTTAAATTCCGCCACAATGTACTGCCTCTaGTCCTGCAGCTTTGTCAGTGCAGCCAGAATATCAGCTTCTCCC +
Preference number: 5 (lower is better)
Translates to: RNWWPCLNSATMYCL*SCSFVSAARISASP
Trigger: GGGAGAAGCTGATATTCTGGCTGCACTGACAAAGCTGCAGGAGCAGAGGCAGTACATTGTGGCGGAATTTAAGCAGGGCCACCAGTTTCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000053434.15
ENSMUST00000123715.8
ENSMUST00000130367.8
ENSMUST00000130801.8
ENSMUST00000144182.8
ENSMUST00000179968.8
CDS GCA 90 bp CCGGGTGAAGGTGGTCGTGAAGGTATAGATGAGTTCCTGGGACTCTaGATTGGTGAATGTCACAGTGCCACCTTCATAATCCAGGGCGAT +
Preference number: 5 (lower is better)
Translates to: PGEGGREGIDEFLGL*IGECHSATFIIQGD
Trigger: ATCGCCCTGGATTATGAAGGTGGCACTGTGACATTCACCAATGCAGAGTCCCAGGAACTCATCTATACCTTCACGACCACCTTCACCCGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000053434.15
ENSMUST00000130367.8
ENSMUST00000179968.8
CDS CCA 90 bp CTTCTGGTCGCAGGGAGAGGTCCCCTTTCCTCTTCACAGAGTCTTTaGCCACTCCCACCATGCAGCTTTCCTGAACTTCTTCTTCTTCTT +
Preference number: 5 (lower is better)
Translates to: LLVAGRGPLSSSQSL*PLPPCSFPELLLLL
Trigger: AAGAAGAAGAAGAAGTTCAGGAAAGCTGCATGGTGGGAGTGGCCAAAGACTCTGTGAAGAGGAAAGGGGACCTCTCCCTGCGACCAGAAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000053434.15
ENSMUST00000130367.8
ENSMUST00000179968.8
CDS-3UTR CAA 90 bp AGGCAGCATGTGATGCATACGAAGTGTTCAGTCTCGAGACGCTGTGGTGACTCCAGCTTCTCCCTTGGCTaGAAAGCCCTGGATTTTGTC +
Preference number: 5 (lower is better)
Translates to: RQHVMHTKCSVSRRCGDSSFSLG*KALDFV
Trigger: GACAAAATCCAGGGCTTTCAAGCCAAGGGAGAAGCT...GGAGTCACCACAGCGTCTCGAGACTGAACACTTCGTATGCATCACATGCTGCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000053434.15
ENSMUST00000123715.8
ENSMUST00000130367.8
ENSMUST00000179968.8
CDS-3UTR CAA 90 bp AGGCAGCATGTGATGCATACGAAGTGTTCAGTCTCGAGACGCTGTGGTGACTCCTCTGCTCCTGCAGCTTaGTCAGTGCAGCCAGAATAT +
Preference number: 5 (lower is better)
Translates to: RQHVMHTKCSVSRRCGDSSAPAA*SVQPEY
Trigger: ATATTCTGGCTGCACTGACAAAGCTGCAGGAGCAGA...GGAGTCACCACAGCGTCTCGAGACTGAACACTTCGTATGCATCACATGCTGCCT
52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000053434.15
ENSMUST00000123715.8
ENSMUST00000130367.8
ENSMUST00000179968.8
CDS CCA 90 bp TTTAACCATGTGAGGGATGGCTTTCCCAATCCAGAACTTCTTCCGTaGGTACTTGTTGGCGAAGTCCTTGGTGTCCTGCATCAGCTCTGC +
Preference number: 5 (lower is better)
Translates to: FNHVRDGFPNPELLP*VLVGEVLGVLHQLC
Trigger: GCAGAGCTGATGCAGGACACCAAGGACTTCGCCAACAAGTACCCACGGAAGAAGTTCTGGATTGGGAAAGCCATCCCTCACATGGTTAAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000124136.2
CDS-3UTR CAA 90 bp AATGGGTGTGTTCAGGAAAGAGGGAGTCATTTGGTCTTCAGAGCAGGAAACCTCTGGGGCGGATATCACTaGTGCAGCTGCGACAGAAGA +
Preference number: 5 (lower is better)
Translates to: NGCVQERGSHLVFRAGNLWGGYH*CSCDRR
Trigger: TCTTCTGTCGCAGCTGCACAAGTGATATCCGCCCCA...GAGGTTTCCTGCTCTGAAGACCAAATGACTCCCTCTTTCCTGAACACACCCATT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000053434.15
ENSMUST00000130367.8
ENSMUST00000179968.8
CDS-3UTR CAA 90 bp ACTTCGAGGACAGCAAAAACAGCTTCAGATGTGATGGAAAGTCTACCTGTGGGCTGGGGCGGATATCACTaGTGCAGCTGCGACAGAAGA +
Preference number: 5 (lower is better)
Translates to: TSRTAKTASDVMESLPVGWGGYH*CSCDRR
Trigger: TCTTCTGTCGCAGCTGCACAAGTGATATCCGCCCCA...GCCCACAGGTAGACTTTCCATCACATCTGAAGCTGTTTTTGCTGTCCTCGAAGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000053434.15
ENSMUST00000130367.8
ENSMUST00000179968.8
CDS-3UTR CAA 90 bp GGAACCTTCCTCCATTATAGTTTTGGGATCCCAGAGAAGGGAAGTTTCCATGGGTGGGGCGGATATCACTaGTGCAGCTGCGACAGAAGA +
Preference number: 5 (lower is better)
Translates to: GTFLHYSFGIPEKGSFHGWGGYH*CSCDRR
Trigger: TCTTCTGTCGCAGCTGCACAAGTGATATCCGCCCCA...CCCATGGAAACTTCCCTTCTCTGGGATCCCAAAACTATAATGGAGGAAGGTTCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000053434.15
ENSMUST00000130367.8
ENSMUST00000179968.8
CDS-3UTR CAA 90 bp AGGGACAAGACAAATGGGTGTGTTCAGGAAAGAGGGAGTCATTTGGTCTTCAGATGTTCTCCACCAGACTaGCTAGCTGCCACACGGGTC +
Preference number: 5 (lower is better)
Translates to: RDKTNGCVQERGSHLVFRCSPPD*LAATRV
Trigger: GACCCGTGTGGCAGCTAGCAAGTCTGGTGGAGAACA...TCTGAAGACCAAATGACTCCCTCTTTCCTGAACACACCCATTTGTCTTGTCCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000053434.15
ENSMUST00000130367.8
ENSMUST00000179968.8
CDS-3UTR CAA 90 bp AGAACACAGGGACAAGACAAATGGGTGTGTTCAGGAAAGAGGGAGTCATTTGGTCCTGGCTGTCTGCCATaGTCCACCTTCAGCCGTTCA +
Preference number: 5 (lower is better)
Translates to: RTQGQDKWVCSGKRESFGPGCLP*STFSRS
Trigger: TGAACGGCTGAAGGTGGACAATGGCAGACAGCCAGG...ACCAAATGACTCCCTCTTTCCTGAACACACCCATTTGTCTTGTCCCTGTGTTCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000053434.15
ENSMUST00000130367.8
ENSMUST00000179968.8
CDS GCA 90 bp AGAGGTCCCCTTTCCTCTTCACAGAGTCTTTGGCCACTCCCACCATaGAGCTTTCCTGAACTTCTTCTTCTTCTTCCTCTTCCTCCTCTT +
Preference number: 5 (lower is better)
Translates to: RGPLSSSQSLWPLPP*SFPELLLLLPLPPL
Trigger: AAGAGGAGGAAGAGGAAGAAGAAGAAGAAGTTCAGGAAAGCTGCATGGTGGGAGTGGCCAAAGACTCTGTGAAGAGGAAAGGGGACCTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000053434.15
ENSMUST00000130367.8
ENSMUST00000179968.8
CDS CCA 90 bp TTTAACCATGTGAGGGATGGCTTTCCCAATCCAGAACTTCTTCCGTaGGTACTTGTTGGCGAAGTCCTTGGTGTCCTGTGTAGTGCAGAC +
Preference number: 5 (lower is better)
Translates to: FNHVRDGFPNPELLP*VLVGEVLGVLCSAD
Trigger: GTCTGCACTACACAGGACACCAAGGACTTCGCCAACAAGTACCCACGGAAGAAGTTCTGGATTGGGAAAGCCATCCCTCACATGGTTAAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000053434.15
ENSMUST00000123715.8
ENSMUST00000130367.8
ENSMUST00000144182.8
CDS-3UTR CAA 90 bp GTGTTCAGGAAAGAGGGAGTCATTTGGTCTTCAGAGCAGGAAACCTCAGAGGAATTCTTCCGTGGGTACTaGTTGGCGAAGTCCTTGGTG +
Preference number: 5 (lower is better)
Translates to: VFRKEGVIWSSEQETSEEFFRGY*LAKSLV
Trigger: CACCAAGGACTTCGCCAACAAGTACCCACGGAAGAA...TTCCTCTGAGGTTTCCTGCTCTGAAGACCAAATGACTCCCTCTTTCCTGAACAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000053434.15
ENSMUST00000130367.8
ENSMUST00000179968.8
CDS-3UTR CAA 90 bp AAAAACAGCTTCAGATGTGATGGAAAGTCTACCTGTGGGCACTGGCTAACAACTAAGTCTCTCAGCAGCTaGCCCTGGAACTGCCTCAGG +
Preference number: 5 (lower is better)
Translates to: KNSFRCDGKSTCGHWLTTKSLSS*PWNCLR
Trigger: CCTGAGGCAGTTCCAGGGCAAGCTGCTGAGAGACTT...AGTTGTTAGCCAGTGCCCACAGGTAGACTTTCCATCACATCTGAAGCTGTTTTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000053434.15
ENSMUST00000130367.8
ENSMUST00000179968.8
CDS GCA 90 bp TTCTTTAGAAACTGGTGGCCCTGCTTAAATTCCGCCACAATGTACTaGCTCTGCTCCTGCAGCTTTGTCAGTGCAGCCAGAATATCAGCT +
Preference number: 5 (lower is better)
Translates to: FFRNWWPCLNSATMY*LCSCSFVSAARISA
Trigger: AGCTGATATTCTGGCTGCACTGACAAAGCTGCAGGAGCAGAGGCAGTACATTGTGGCGGAATTTAAGCAGGGCCACCAGTTTCTAAAGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000053434.15
ENSMUST00000123715.8
ENSMUST00000130367.8
ENSMUST00000130801.8
ENSMUST00000144182.8
ENSMUST00000179968.8
CDS-3UTR CAA 90 bp GGAACCTTCCTCCATTATAGTTTTGGGATCCCAGAGAAGGGAAGTTTCCATGGGAGCTTCTCCCTTGGCTaGAAAGCCCTGGATTTTGTC +
Preference number: 5 (lower is better)
Translates to: GTFLHYSFGIPEKGSFHGSFSLG*KALDFV
Trigger: GACAAAATCCAGGGCTTTCAAGCCAAGGGAGAAGCT...CCCATGGAAACTTCCCTTCTCTGGGATCCCAAAACTATAATGGAGGAAGGTTCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000053434.15
ENSMUST00000130367.8
ENSMUST00000179968.8
CDS-3UTR CAA 90 bp GGAACCTTCCTCCATTATAGTTTTGGGATCCCAGAGAAGGGAAGTTTCCATGGGTCTGCTCCTGCAGCTTaGTCAGTGCAGCCAGAATAT +
Preference number: 5 (lower is better)
Translates to: GTFLHYSFGIPEKGSFHGSAPAA*SVQPEY
Trigger: ATATTCTGGCTGCACTGACAAAGCTGCAGGAGCAGA...CCCATGGAAACTTCCCTTCTCTGGGATCCCAAAACTATAATGGAGGAAGGTTCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000053434.15
ENSMUST00000130367.8
ENSMUST00000179968.8
CDS-3UTR CAA 90 bp AGAACACAGGGACAAGACAAATGGGTGTGTTCAGGAAAGAGGGAGTCATTTGGTTCCTGGGACTCTGCATaGGTGAATGTCACAGTGCCA +
Preference number: 5 (lower is better)
Translates to: RTQGQDKWVCSGKRESFGSWDSA*VNVTVP
Trigger: TGGCACTGTGACATTCACCAATGCAGAGTCCCAGGA...ACCAAATGACTCCCTCTTTCCTGAACACACCCATTTGTCTTGTCCCTGTGTTCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000053434.15
ENSMUST00000130367.8
ENSMUST00000179968.8
CDS-3UTR CAA 90 bp TGGTCAAGAGCAAGATGTTCGGGTTGTTTTAAAAACTTCCTTCACAAGGACTGCTTCTTCCGTGGGTACTaGTTGGCGAAGTCCTTGGTG +
Preference number: 5 (lower is better)
Translates to: WSRARCSGCFKNFLHKDCFFRGY*LAKSLV
Trigger: CACCAAGGACTTCGCCAACAAGTACCCACGGAAGAA...GCAGTCCTTGTGAAGGAAGTTTTTAAAACAACCCGAACATCTTGCTCTTGACCA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000053434.15
ENSMUST00000130367.8
ENSMUST00000179968.8
CDS TCA 90 bp GAAAGAAGTTTATCTGAGAATTCTCCTGCCTTTCTTTTAACCATGTaGGGGATGGCTTTCCCAATCCAGAACTTCTTCCGTGGGTACTTG +
Preference number: 5 (lower is better)
Translates to: ERSLSENSPAFLLTM*GMAFPIQNFFRGYL
Trigger: CAAGTACCCACGGAAGAAGTTCTGGATTGGGAAAGCCATCCCTCACATGGTTAAAAGAAAGGCAGGAGAATTCTCAGATAAACTTCTTTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000053434.15
ENSMUST00000123715.8
ENSMUST00000124136.2
ENSMUST00000130367.8
ENSMUST00000144182.8
ENSMUST00000179968.8
CDS GCA 72 bp CGGGTCTTGAACTTCTCCCTGCCCTCGGTGAGGAGCTaGTCCAAGGTGGCCAGCTGGTCTAGCAGGTGCTGC +
Preference number: 6 (lower is better)
Translates to: RVLNFSLPSVRS*SKVASWSSRCC
Trigger: GCAGCACCTGCTAGACCAGCTGGCCACCTTGGAGCAGCTCCTCACCGAGGGCAGGGAGAAGTTCAAGACCCG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000053434.15
ENSMUST00000123715.8
ENSMUST00000124136.2
ENSMUST00000130367.8
ENSMUST00000130801.8
ENSMUST00000144182.8
ENSMUST00000179968.8
CDS CAA 90 bp GAGATGACCAGAGTCAACCGGTCAAGCTCACTGACGCCCCGGGTCTaGAACTTCTCCCTGCCCTCGGTGAGGAGCTGCTCCAAGGTGGCC +
Preference number: 6 (lower is better)
Translates to: EMTRVNRSSSLTPRV*NFSLPSVRSCSKVA
Trigger: GGCCACCTTGGAGCAGCTCCTCACCGAGGGCAGGGAGAAGTTCAAGACCCGGGGCGTCAGTGAGCTTGACCGGTTGACTCTGGTCATCTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000053434.15
ENSMUST00000123715.8
ENSMUST00000124136.2
ENSMUST00000130367.8
ENSMUST00000130801.8
ENSMUST00000144182.8
ENSMUST00000179968.8
CDS CCA 72 bp GGCGAAGTCCTTGGTGTCCTGCATCAGCTCTGCAGCTaGCTGTCGTGCCTTGCCCTCCAGCTCGGAGATGAC +
Preference number: 6 (lower is better)
Translates to: GEVLGVLHQLCS*LSCLALQLGDD
Trigger: GTCATCTCCGAGCTGGAGGGCAAGGCACGACAGCCAGCTGCAGAGCTGATGCAGGACACCAAGGACTTCGCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000124136.2
CDS CAA 90 bp AGAGCGGGCAGACAGGCCGGTTCCCCGATATGGGGCGGATATCACTaGTGCAGCTGCGACAGAAGACATGGCCACAGTCGATGGTCACCG +
Preference number: 6 (lower is better)
Translates to: RAGRQAGSPIWGGYH*CSCDRRHGHSRWSP
Trigger: CGGTGACCATCGACTGTGGCCATGTCTTCTGTCGCAGCTGCACAAGTGATATCCGCCCCATATCGGGGAACCGGCCTGTCTGCCCGCTCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000053434.15
ENSMUST00000123715.8
ENSMUST00000130367.8
ENSMUST00000130801.8
ENSMUST00000144182.8
ENSMUST00000179968.8
CDS GCA 72 bp AGGAGCTGCTCCAAGGTGGCCAGCTGGTCTAGCAGGTaGTGCTCCCGCTTCTTTAGAAACTGGTGGCCCTGC +
Preference number: 6 (lower is better)
Translates to: RSCSKVASWSSR*CSRFFRNWWPC
Trigger: GCAGGGCCACCAGTTTCTAAAGAAGCGGGAGCAGCACCTGCTAGACCAGCTGGCCACCTTGGAGCAGCTCCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000053434.15
ENSMUST00000123715.8
ENSMUST00000124136.2
ENSMUST00000130367.8
ENSMUST00000130801.8
ENSMUST00000144182.8
ENSMUST00000179968.8
CDS GCA 72 bp GGTGTCCTGTGTAGTGCAGACATCCTGCATCAGCTCTaGAGCTGGCTGTCGTGCCTTGCCCTCCAGCTCGGA +
Preference number: 6 (lower is better)
Translates to: GVLCSADILHQL*SWLSCLALQLG
Trigger: TCCGAGCTGGAGGGCAAGGCACGACAGCCAGCTGCAGAGCTGATGCAGGATGTCTGCACTACACAGGACACC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000053434.15
ENSMUST00000123715.8
ENSMUST00000130367.8
ENSMUST00000144182.8
CDS CCA 72 bp CTTCTCCTGGTGCCGCTCACACAACTTCATGTCCTGTaGCTCGCGGGCGAGCTCTCCTGGCTGTCTGCCATT +
Preference number: 6 (lower is better)
Translates to: LLLVPLTQLHVL*LAGELSWLSAI
Trigger: AATGGCAGACAGCCAGGAGAGCTCGCCCGCGAGCCACAGGACATGAAGTTGTGTGAGCGGCACCAGGAGAAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000053434.15
ENSMUST00000123715.8
ENSMUST00000130367.8
ENSMUST00000130801.8
ENSMUST00000144182.8
ENSMUST00000179968.8
CDS CCA 72 bp CTGCCCTCGGTGAGGAGCTGCTCCAAGGTGGCCAGCTaGTCTAGCAGGTGCTGCTCCCGCTTCTTTAGAAAC +
Preference number: 6 (lower is better)
Translates to: LPSVRSCSKVAS*SSRCCSRFFRN
Trigger: GTTTCTAAAGAAGCGGGAGCAGCACCTGCTAGACCAGCTGGCCACCTTGGAGCAGCTCCTCACCGAGGGCAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000053434.15
ENSMUST00000123715.8
ENSMUST00000124136.2
ENSMUST00000130367.8
ENSMUST00000130801.8
ENSMUST00000144182.8
ENSMUST00000179968.8
CDS CAA 90 bp GCTAGCTGCCACACGGGTCGGATGTTCTCCTTCTTAAAGGGCTTCTaGCAGAGCGGGCAGACAGGCCGGTTCCCCGATATGGGGCGGATA +
Preference number: 6 (lower is better)
Translates to: ASCHTGRMFSFLKGF*QSGQTGRFPDMGRI
Trigger: TATCCGCCCCATATCGGGGAACCGGCCTGTCTGCCCGCTCTGCAAGAAGCCCTTTAAGAAGGAGAACATCCGACCCGTGTGGCAGCTAGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000053434.15
ENSMUST00000123715.8
ENSMUST00000130367.8
ENSMUST00000130801.8
ENSMUST00000144182.8
ENSMUST00000179968.8
CDS CAA 90 bp CAGGTACACACAGCCTGCATCAGCTCTGCAGCTGGCTGTCGTGCCTaGCCCTCCAGCTCGGAGATGACCAGAGTCAACCGGTCAAGCTCA +
Preference number: 6 (lower is better)
Translates to: QVHTACISSAAGCRA*PSSSEMTRVNRSSS
Trigger: TGAGCTTGACCGGTTGACTCTGGTCATCTCCGAGCTGGAGGGCAAGGCACGACAGCCAGCTGCAGAGCTGATGCAGGCTGTGTGTACCTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000179968.8
CDS GCA 72 bp CAGGCCGGTTCCCCGATATGGGGCGGATATCACTTGTaGAGCTGCGACAGAAGACATGGCCACAGTCGATGG +
Preference number: 6 (lower is better)
Translates to: QAGSPIWGGYHL*SCDRRHGHSRW
Trigger: CCATCGACTGTGGCCATGTCTTCTGTCGCAGCTGCACAAGTGATATCCGCCCCATATCGGGGAACCGGCCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000053434.15
ENSMUST00000123715.8
ENSMUST00000130367.8
ENSMUST00000130801.8
ENSMUST00000144182.8
ENSMUST00000179968.8
CDS GCA 72 bp GCAGACATCCTGCATCAGCTCTGCAGCTGGCTGTCGTaGCTTGCCCTCCAGCTCGGAGATGACCAGAGTCAA +
Preference number: 6 (lower is better)
Translates to: ADILHQLCSWLS*LALQLGDDQSQ
Trigger: TTGACTCTGGTCATCTCCGAGCTGGAGGGCAAGGCACGACAGCCAGCTGCAGAGCTGATGCAGGATGTCTGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000053434.15
ENSMUST00000123715.8
ENSMUST00000130367.8
ENSMUST00000144182.8
CDS GCA 72 bp CTTGGTGTCCTGCATCAGCTCTGCAGCTGGCTGTCGTaGCTTGCCCTCCAGCTCGGAGATGACCAGAGTCAA +
Preference number: 6 (lower is better)
Translates to: LGVLHQLCSWLS*LALQLGDDQSQ
Trigger: TTGACTCTGGTCATCTCCGAGCTGGAGGGCAAGGCACGACAGCCAGCTGCAGAGCTGATGCAGGACACCAAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000124136.2
CDS GCA 72 bp ACACACAGCCTGCATCAGCTCTGCAGCTGGCTGTCGTaGCTTGCCCTCCAGCTCGGAGATGACCAGAGTCAA +
Preference number: 6 (lower is better)
Translates to: THSLHQLCSWLS*LALQLGDDQSQ
Trigger: TTGACTCTGGTCATCTCCGAGCTGGAGGGCAAGGCACGACAGCCAGCTGCAGAGCTGATGCAGGCTGTGTGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000179968.8
CDS CCA 72 bp TCTTGCAGAGCGGGCAGACAGGCCGGTTCCCCGATATaGGGCGGATATCACTTGTGCAGCTGCGACAGAAGA +
Preference number: 6 (lower is better)
Translates to: SCRAGRQAGSPI*GGYHLCSCDRR
Trigger: TCTTCTGTCGCAGCTGCACAAGTGATATCCGCCCCATATCGGGGAACCGGCCTGTCTGCCCGCTCTGCAAGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000053434.15
ENSMUST00000123715.8
ENSMUST00000130367.8
ENSMUST00000130801.8
ENSMUST00000144182.8
ENSMUST00000179968.8
CDS CCA 72 bp CTGTGTAGTGCAGACATCCTGCATCAGCTCTGCAGCTaGCTGTCGTGCCTTGCCCTCCAGCTCGGAGATGAC +
Preference number: 6 (lower is better)
Translates to: LCSADILHQLCS*LSCLALQLGDD
Trigger: GTCATCTCCGAGCTGGAGGGCAAGGCACGACAGCCAGCTGCAGAGCTGATGCAGGATGTCTGCACTACACAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000053434.15
ENSMUST00000123715.8
ENSMUST00000130367.8
ENSMUST00000144182.8
CDS CAA 72 bp TGTGGCTCGCGGGCGAGCTCTCCTGGCTGTCTGCCATaGTCCACCTTCAGCCGTTCAATGTTCTCCACCAGA +
Preference number: 6 (lower is better)
Translates to: CGSRASSPGCLP*STFSRSMFSTR
Trigger: TCTGGTGGAGAACATTGAACGGCTGAAGGTGGACAATGGCAGACAGCCAGGAGAGCTCGCCCGCGAGCCACA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000053434.15
ENSMUST00000123715.8
ENSMUST00000130367.8
ENSMUST00000130801.8
ENSMUST00000144182.8
ENSMUST00000179968.8
CDS CAA 90 bp GTAGTGCAGACATCCTGCATCAGCTCTGCAGCTGGCTGTCGTGCCTaGCCCTCCAGCTCGGAGATGACCAGAGTCAACCGGTCAAGCTCA +
Preference number: 6 (lower is better)
Translates to: VVQTSCISSAAGCRA*PSSSEMTRVNRSSS
Trigger: TGAGCTTGACCGGTTGACTCTGGTCATCTCCGAGCTGGAGGGCAAGGCACGACAGCCAGCTGCAGAGCTGATGCAGGATGTCTGCACTAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000053434.15
ENSMUST00000123715.8
ENSMUST00000130367.8
ENSMUST00000144182.8
CDS CAA 90 bp AAGTCCTTGGTGTCCTGCATCAGCTCTGCAGCTGGCTGTCGTGCCTaGCCCTCCAGCTCGGAGATGACCAGAGTCAACCGGTCAAGCTCA +
Preference number: 6 (lower is better)
Translates to: KSLVSCISSAAGCRA*PSSSEMTRVNRSSS
Trigger: TGAGCTTGACCGGTTGACTCTGGTCATCTCCGAGCTGGAGGGCAAGGCACGACAGCCAGCTGCAGAGCTGATGCAGGACACCAAGGACTT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000124136.2
CDS CAA 90 bp TTCATGTCCTGTGGCTCGCGGGCGAGCTCTCCTGGCTGTCTGCCATaGTCCACCTTCAGCCGTTCAATGTTCTCCACCAGACTTGCTAGC +
Preference number: 6 (lower is better)
Translates to: FMSCGSRASSPGCLP*STFSRSMFSTRLAS
Trigger: GCTAGCAAGTCTGGTGGAGAACATTGAACGGCTGAAGGTGGACAATGGCAGACAGCCAGGAGAGCTCGCCCGCGAGCCACAGGACATGAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000053434.15
ENSMUST00000123715.8
ENSMUST00000130367.8
ENSMUST00000130801.8
ENSMUST00000144182.8
ENSMUST00000179968.8
CDS GCA 72 bp AGCTGCTCCAAGGTGGCCAGCTGGTCTAGCAGGTGCTaGTCCCGCTTCTTTAGAAACTGGTGGCCCTGCTTA +
Preference number: 6 (lower is better)
Translates to: SCSKVASWSSRC*SRFFRNWWPCL
Trigger: TAAGCAGGGCCACCAGTTTCTAAAGAAGCGGGAGCAGCACCTGCTAGACCAGCTGGCCACCTTGGAGCAGCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000053434.15
ENSMUST00000123715.8
ENSMUST00000124136.2
ENSMUST00000130367.8
ENSMUST00000130801.8
ENSMUST00000144182.8
ENSMUST00000179968.8
CDS CCA 72 bp CAACTTCATGTCCTGTGGCTCGCGGGCGAGCTCTCCTaGCTGTCTGCCATTGTCCACCTTCAGCCGTTCAAT +
Preference number: 6 (lower is better)
Translates to: QLHVLWLAGELS*LSAIVHLQPFN
Trigger: ATTGAACGGCTGAAGGTGGACAATGGCAGACAGCCAGGAGAGCTCGCCCGCGAGCCACAGGACATGAAGTTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000053434.15
ENSMUST00000123715.8
ENSMUST00000130367.8
ENSMUST00000130801.8
ENSMUST00000144182.8
ENSMUST00000179968.8
CDS CAA 72 bp AGACAGGCCGGTTCCCCGATATGGGGCGGATATCACTaGTGCAGCTGCGACAGAAGACATGGCCACAGTCGA +
Preference number: 6 (lower is better)
Translates to: RQAGSPIWGGYH*CSCDRRHGHSR
Trigger: TCGACTGTGGCCATGTCTTCTGTCGCAGCTGCACAAGTGATATCCGCCCCATATCGGGGAACCGGCCTGTCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000053434.15
ENSMUST00000123715.8
ENSMUST00000130367.8
ENSMUST00000130801.8
ENSMUST00000144182.8
ENSMUST00000179968.8
CDS CAA 72 bp CACACGGGTCGGATGTTCTCCTTCTTAAAGGGCTTCTaGCAGAGCGGGCAGACAGGCCGGTTCCCCGATATG +
Preference number: 6 (lower is better)
Translates to: HTGRMFSFLKGF*QSGQTGRFPDM
Trigger: CATATCGGGGAACCGGCCTGTCTGCCCGCTCTGCAAGAAGCCCTTTAAGAAGGAGAACATCCGACCCGTGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000053434.15
ENSMUST00000123715.8
ENSMUST00000130367.8
ENSMUST00000130801.8
ENSMUST00000144182.8
ENSMUST00000179968.8
CDS CCA 72 bp AGAACTTCTTCCGTGGGTACTTGTTGGCGAAGTCCTTaGTGTCCTGCATCAGCTCTGCAGCTGGCTGTCGTG +
Preference number: 6 (lower is better)
Translates to: RTSSVGTCWRSP*CPASALQLAVV
Trigger: CACGACAGCCAGCTGCAGAGCTGATGCAGGACACCAAGGACTTCGCCAACAAGTACCCACGGAAGAAGTTCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000124136.2
CDS CAA 72 bp CAGAACTTCTTCCGTGGGTACTTGTTGGCGAAGTCCTaGGTGTCCTGCATCAGCTCTGCAGCTGGCTGTCGT +
Preference number: 6 (lower is better)
Translates to: QNFFRGYLLAKS*VSCISSAAGCR
Trigger: ACGACAGCCAGCTGCAGAGCTGATGCAGGACACCAAGGACTTCGCCAACAAGTACCCACGGAAGAAGTTCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000124136.2
CDS GCA 72 bp AACTGGTGGCCCTGCTTAAATTCCGCCACAATGTACTaGCTCTGCTCCTGCAGCTTTGTCAGTGCAGCCAGA +
Preference number: 6 (lower is better)
Translates to: NWWPCLNSATMY*LCSCSFVSAAR
Trigger: TCTGGCTGCACTGACAAAGCTGCAGGAGCAGAGGCAGTACATTGTGGCGGAATTTAAGCAGGGCCACCAGTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000053434.15
ENSMUST00000123715.8
ENSMUST00000130367.8
ENSMUST00000130801.8
ENSMUST00000144182.8
ENSMUST00000179968.8
CDS GCA 72 bp AGGTGCTGCTCCCGCTTCTTTAGAAACTGGTGGCCCTaGTTAAATTCCGCCACAATGTACTGCCTCTGCTCC +
Preference number: 6 (lower is better)
Translates to: RCCSRFFRNWWP*LNSATMYCLCS
Trigger: GGAGCAGAGGCAGTACATTGTGGCGGAATTTAAGCAGGGCCACCAGTTTCTAAAGAAGCGGGAGCAGCACCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000053434.15
ENSMUST00000123715.8
ENSMUST00000130367.8
ENSMUST00000130801.8
ENSMUST00000144182.8
ENSMUST00000179968.8
CDS CAA 90 bp TTCCCAATCCAGAACTTCTTCCGTGGGTACTTGTTGGCGAAGTCCTaGGTGTCTAGGCAGGTACACACAGCCTGCATCAGCTCTGCAGCT +
Preference number: 6 (lower is better)
Translates to: FPIQNFFRGYLLAKS*VSRQVHTACISSAA
Trigger: AGCTGCAGAGCTGATGCAGGCTGTGTGTACCTGCCTAGACACCAAGGACTTCGCCAACAAGTACCCACGGAAGAAGTTCTGGATTGGGAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000179968.8
CDS TCA 72 bp CTTAGGGTGTTCAAGTGGTTCAGAATTTTCTCTCTGTaGGGCAGGGCGGCTTTCTCCACCAGGACTGCAGTG +
Preference number: 6 (lower is better)
Translates to: LRVFKWFRIFSL*GRAAFSTRTAV
Trigger: CACTGCAGTCCTGGTGGAGAAAGCCGCCCTGCCTCACAGAGAGAAAATTCTGAACCACTTGAACACCCTAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000053434.15
ENSMUST00000123715.8
ENSMUST00000130367.8
ENSMUST00000130801.8
ENSMUST00000144182.8
ENSMUST00000179968.8
CDS GCA 72 bp TTCAGCCGTTCAATGTTCTCCACCAGACTTGCTAGCTaGCACACGGGTCGGATGTTCTCCTTCTTAAAGGGC +
Preference number: 6 (lower is better)
Translates to: FSRSMFSTRLAS*HTGRMFSFLKG
Trigger: GCCCTTTAAGAAGGAGAACATCCGACCCGTGTGGCAGCTAGCAAGTCTGGTGGAGAACATTGAACGGCTGAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000053434.15
ENSMUST00000123715.8
ENSMUST00000130367.8
ENSMUST00000130801.8
ENSMUST00000144182.8
ENSMUST00000179968.8
CDS CCA 72 bp TCTAGCAGGTGCTGCTCCCGCTTCTTTAGAAACTGGTaGCCCTGCTTAAATTCCGCCACAATGTACTGCCTC +
Preference number: 6 (lower is better)
Translates to: SSRCCSRFFRNW*PCLNSATMYCL
Trigger: GAGGCAGTACATTGTGGCGGAATTTAAGCAGGGCCACCAGTTTCTAAAGAAGCGGGAGCAGCACCTGCTAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000053434.15
ENSMUST00000123715.8
ENSMUST00000130367.8
ENSMUST00000130801.8
ENSMUST00000144182.8
ENSMUST00000179968.8
CDS CCA 72 bp TGGTCTAGCAGGTGCTGCTCCCGCTTCTTTAGAAACTaGTGGCCCTGCTTAAATTCCGCCACAATGTACTGC +
Preference number: 6 (lower is better)
Translates to: WSSRCCSRFFRN*WPCLNSATMYC
Trigger: GCAGTACATTGTGGCGGAATTTAAGCAGGGCCACCAGTTTCTAAAGAAGCGGGAGCAGCACCTGCTAGACCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000053434.15
ENSMUST00000123715.8
ENSMUST00000130367.8
ENSMUST00000130801.8
ENSMUST00000144182.8
ENSMUST00000179968.8
CDS CCA 72 bp GTGAGGGATGGCTTTCCCAATCCAGAACTTCTTCCGTaGGTACTTGTTGGCGAAGTCCTTGGTGTCCTGTGT +
Preference number: 6 (lower is better)
Translates to: VRDGFPNPELLP*VLVGEVLGVLC
Trigger: ACACAGGACACCAAGGACTTCGCCAACAAGTACCCACGGAAGAAGTTCTGGATTGGGAAAGCCATCCCTCAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000053434.15
ENSMUST00000123715.8
ENSMUST00000130367.8
ENSMUST00000144182.8
CDS CCA 72 bp CTTTCCCAATCCAGAACTTCTTCCGTGGGTACTTGTTaGCGAAGTCCTTGGTGTCCTGCATCAGCTCTGCAG +
Preference number: 6 (lower is better)
Translates to: LSQSRTSSVGTC*RSPWCPASALQ
Trigger: CTGCAGAGCTGATGCAGGACACCAAGGACTTCGCCAACAAGTACCCACGGAAGAAGTTCTGGATTGGGAAAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000124136.2
CDS CCA 72 bp GTGAGGGATGGCTTTCCCAATCCAGAACTTCTTCCGTaGGTACTTGTTGGCGAAGTCCTTGGTGTCCTGCAT +
Preference number: 6 (lower is better)
Translates to: VRDGFPNPELLP*VLVGEVLGVLH
Trigger: ATGCAGGACACCAAGGACTTCGCCAACAAGTACCCACGGAAGAAGTTCTGGATTGGGAAAGCCATCCCTCAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000124136.2
CDS CAA 72 bp GCTTTCCCAATCCAGAACTTCTTCCGTGGGTACTTGTaGGCGAAGTCCTTGGTGTCCTGCATCAGCTCTGCA +
Preference number: 6 (lower is better)
Translates to: AFPIQNFFRGYL*AKSLVSCISSA
Trigger: TGCAGAGCTGATGCAGGACACCAAGGACTTCGCCAACAAGTACCCACGGAAGAAGTTCTGGATTGGGAAAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000124136.2
CDS CAA 90 bp TTCCCAATCCAGAACTTCTTCCGTGGGTACTTGTTGGCGAAGTCCTaGGTGTCCTGTGTAGTGCAGACATCCTGCATCAGCTCTGCAGCT +
Preference number: 6 (lower is better)
Translates to: FPIQNFFRGYLLAKS*VSCVVQTSCISSAA
Trigger: AGCTGCAGAGCTGATGCAGGATGTCTGCACTACACAGGACACCAAGGACTTCGCCAACAAGTACCCACGGAAGAAGTTCTGGATTGGGAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000053434.15
ENSMUST00000123715.8
ENSMUST00000130367.8
ENSMUST00000144182.8
CDS GCA 72 bp TGGCCCTGCTTAAATTCCGCCACAATGTACTGCCTCTaGTCCTGCAGCTTTGTCAGTGCAGCCAGAATATCA +
Preference number: 6 (lower is better)
Translates to: WPCLNSATMYCL*SCSFVSAARIS
Trigger: TGATATTCTGGCTGCACTGACAAAGCTGCAGGAGCAGAGGCAGTACATTGTGGCGGAATTTAAGCAGGGCCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000053434.15
ENSMUST00000123715.8
ENSMUST00000130367.8
ENSMUST00000130801.8
ENSMUST00000144182.8
ENSMUST00000179968.8
CDS CCA 72 bp CTTTCCCAATCCAGAACTTCTTCCGTGGGTACTTGTTaGCGAAGTCCTTGGTGTCTAGGCAGGTACACACAG +
Preference number: 6 (lower is better)
Translates to: LSQSRTSSVGTC*RSPWCLGRYTQ
Trigger: CTGTGTGTACCTGCCTAGACACCAAGGACTTCGCCAACAAGTACCCACGGAAGAAGTTCTGGATTGGGAAAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000179968.8
CDS CAA 72 bp GCTTTCCCAATCCAGAACTTCTTCCGTGGGTACTTGTaGGCGAAGTCCTTGGTGTCCTGTGTAGTGCAGACA +
Preference number: 6 (lower is better)
Translates to: AFPIQNFFRGYL*AKSLVSCVVQT
Trigger: TGTCTGCACTACACAGGACACCAAGGACTTCGCCAACAAGTACCCACGGAAGAAGTTCTGGATTGGGAAAGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000053434.15
ENSMUST00000123715.8
ENSMUST00000130367.8
ENSMUST00000144182.8
CDS CAA 72 bp ATGGCTTTCCCAATCCAGAACTTCTTCCGTGGGTACTaGTTGGCGAAGTCCTTGGTGTCCTGTGTAGTGCAG +
Preference number: 6 (lower is better)
Translates to: MAFPIQNFFRGY*LAKSLVSCVVQ
Trigger: CTGCACTACACAGGACACCAAGGACTTCGCCAACAAGTACCCACGGAAGAAGTTCTGGATTGGGAAAGCCAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000053434.15
ENSMUST00000123715.8
ENSMUST00000130367.8
ENSMUST00000144182.8
CDS CAA 72 bp ATGGCTTTCCCAATCCAGAACTTCTTCCGTGGGTACTaGTTGGCGAAGTCCTTGGTGTCCTGCATCAGCTCT +
Preference number: 6 (lower is better)
Translates to: MAFPIQNFFRGY*LAKSLVSCISS
Trigger: AGAGCTGATGCAGGACACCAAGGACTTCGCCAACAAGTACCCACGGAAGAAGTTCTGGATTGGGAAAGCCAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000124136.2
CDS CAA 72 bp GCTTTCCCAATCCAGAACTTCTTCCGTGGGTACTTGTaGGCGAAGTCCTTGGTGTCTAGGCAGGTACACACA +
Preference number: 6 (lower is better)
Translates to: AFPIQNFFRGYL*AKSLVSRQVHT
Trigger: TGTGTGTACCTGCCTAGACACCAAGGACTTCGCCAACAAGTACCCACGGAAGAAGTTCTGGATTGGGAAAGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000179968.8
CDS CAA 72 bp ATGGCTTTCCCAATCCAGAACTTCTTCCGTGGGTACTaGTTGGCGAAGTCCTTGGTGTCTAGGCAGGTACAC +
Preference number: 6 (lower is better)
Translates to: MAFPIQNFFRGY*LAKSLVSRQVH
Trigger: GTGTACCTGCCTAGACACCAAGGACTTCGCCAACAAGTACCCACGGAAGAAGTTCTGGATTGGGAAAGCCAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000179968.8
CDS GCA 72 bp TGCTTAAATTCCGCCACAATGTACTGCCTCTGCTCCTaGAGCTTTGTCAGTGCAGCCAGAATATCAGCTTCT +
Preference number: 6 (lower is better)
Translates to: CLNSATMYCLCS*SFVSAARISAS
Trigger: AGAAGCTGATATTCTGGCTGCACTGACAAAGCTGCAGGAGCAGAGGCAGTACATTGTGGCGGAATTTAAGCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000053434.15
ENSMUST00000123715.8
ENSMUST00000130367.8
ENSMUST00000130801.8
ENSMUST00000144182.8
ENSMUST00000179968.8
CDS GCA 72 bp GGTGGTCGTGAAGGTATAGATGAGTTCCTGGGACTCTaGATTGGTGAATGTCACAGTGCCACCTTCATAATC +
Preference number: 6 (lower is better)
Translates to: GGREGIDEFLGL*IGECHSATFII
Trigger: GATTATGAAGGTGGCACTGTGACATTCACCAATGCAGAGTCCCAGGAACTCATCTATACCTTCACGACCACC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000053434.15
ENSMUST00000130367.8
ENSMUST00000179968.8