Pregenerated sensors for TRIM13 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000035235Ensembl transcript IDs: ENSMUST00000039562.8, ENSMUST00000165015.9
Found 51 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR GCA 90 bp | AGATCTGAATTATTCCTGTGTTCTCCAACAATCCCATCAAGAAGCAGAACTGTGGCCCCAAATGTCCTTTaGACACTGGCATCTTGGGAG | + |
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Preference number: 4 (lower is better) Translates to: RSELFLCSPTIPSRSRTVAPNVL*TLASWE Trigger: CTCCCAAGATGCCAGTGTGCAAAGGACATTTGGGGC...CACAGTTCTGCTTCTTGATGGGATTGTTGGAGAACACAGGAATAATTCAGATCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000039562.8 ENSMUST00000165015.9 |
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| CDS-3UTR TCA 90 bp | AGATCTGAATTATTCCTGTGTTCTCCAACAATCCCATCAAGAAGCAGAACTGTGTTACGCAGAAGATGTTaGGAGGCTGCCCCAAATGTC | + |
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Preference number: 4 (lower is better) Translates to: RSELFLCSPTIPSRSRTVLRRRC*EAAPNV Trigger: GACATTTGGGGCAGCCTCTCAACATCTTCTGCGTAA...CACAGTTCTGCTTCTTGATGGGATTGTTGGAGAACACAGGAATAATTCAGATCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000039562.8 ENSMUST00000165015.9 |
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| CDS-3UTR TCA 90 bp | AGATCTGAATTATTCCTGTGTTCTCCAACAATCCCATCAAGAAGCAGAACTGTGAGCAAATTGGGCATGTaGGGTCTTCTTCAAGCAGCT | + |
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Preference number: 4 (lower is better) Translates to: RSELFLCSPTIPSRSRTVSKLGM*GLLQAA Trigger: AGCTGCTTGAAGAAGACCTCACATGCCCAATTTGCT...CACAGTTCTGCTTCTTGATGGGATTGTTGGAGAACACAGGAATAATTCAGATCT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000039562.8 ENSMUST00000165015.9 |
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| CDS-3UTR TCA 90 bp | AAACAGACTGAAATCTTGATCAGATCTGAATTATTCCTGTGTTCTCCAACAATCTTTGCAGAAGTTGTGTaGGCAGGGCAACACTCGGGG | + |
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Preference number: 4 (lower is better) Translates to: KQTEILIRSELFLCSPTIFAEVV*AGQHSG Trigger: CCCCGAGTGTTGCCCTGCTCACACAACTTCTGCAAA...GATTGTTGGAGAACACAGGAATAATTCAGATCTGATCAAGATTTCAGTCTGTTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000039562.8 ENSMUST00000165015.9 |
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| CDS-3UTR TCA 90 bp | AAACAGACTGAAATCTTGATCAGATCTGAATTATTCCTGTGTTCTCCAACAATCAAGCCTCAGCAATGTTaGAGGCCATCCGCTGCTCCT | + |
|
Preference number: 4 (lower is better) Translates to: KQTEILIRSELFLCSPTIKPQQC*RPSAAP Trigger: AGGAGCAGCGGATGGCCTTCAACATTGCTGAGGCTT...GATTGTTGGAGAACACAGGAATAATTCAGATCTGATCAAGATTTCAGTCTGTTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000039562.8 ENSMUST00000165015.9 |
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| CDS-3UTR GCA 90 bp | AGATCTGAATTATTCCTGTGTTCTCCAACAATCCCATCAAGAAGCAGAACTGTGATAGAAGAGAAGACATaGTTGGTGTGCTCGCCTCGA | + |
|
Preference number: 4 (lower is better) Translates to: RSELFLCSPTIPSRSRTVIEEKT*LVCSPR Trigger: TCGAGGCGAGCACACCAAGCATGTCTTCTCTTCTAT...CACAGTTCTGCTTCTTGATGGGATTGTTGGAGAACACAGGAATAATTCAGATCT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000039562.8 ENSMUST00000165015.9 |
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| CDS-3UTR GCA 90 bp | AAACAGACTGAAATCTTGATCAGATCTGAATTATTCCTGTGTTCTCCAACAATCGCCCCAAATGTCCTTTaGACACTGGCATCTTGGGAG | + |
|
Preference number: 4 (lower is better) Translates to: KQTEILIRSELFLCSPTIAPNVL*TLASWE Trigger: CTCCCAAGATGCCAGTGTGCAAAGGACATTTGGGGC...GATTGTTGGAGAACACAGGAATAATTCAGATCTGATCAAGATTTCAGTCTGTTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000039562.8 ENSMUST00000165015.9 |
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| CDS-3UTR GCA 90 bp | AAACAGACTGAAATCTTGATCAGATCTGAATTATTCCTGTGTTCTCCAACAATCAAGACATGCTTGGTGTaGTCGCCTCGAGTAGCACAG | + |
|
Preference number: 4 (lower is better) Translates to: KQTEILIRSELFLCSPTIKTCLV*SPRVAQ Trigger: CTGTGCTACTCGAGGCGAGCACACCAAGCATGTCTT...GATTGTTGGAGAACACAGGAATAATTCAGATCTGATCAAGATTTCAGTCTGTTT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000039562.8 ENSMUST00000165015.9 |
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| CDS-3UTR GCA 90 bp | AGATCTGAATTATTCCTGTGTTCTCCAACAATCCCATCAAGAAGCAGAACTGTGATCCCACAAATCAGCTaGATATCAGTTACGCAGAAG | + |
|
Preference number: 4 (lower is better) Translates to: RSELFLCSPTIPSRSRTVIPQIS*ISVTQK Trigger: CTTCTGCGTAACTGATATGCAGCTGATTTGTGGGAT...CACAGTTCTGCTTCTTGATGGGATTGTTGGAGAACACAGGAATAATTCAGATCT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000039562.8 ENSMUST00000165015.9 |
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| CDS-3UTR CCA 90 bp | AAACAGACTGAAATCTTGATCAGATCTGAATTATTCCTGTGTTCTCCAACAATCACACTTGAAGGGAGATaGTCTCCACAGGGAATTCCG | + |
|
Preference number: 4 (lower is better) Translates to: KQTEILIRSELFLCSPTITLEGR*SPQGIP Trigger: CGGAATTCCCTGTGGAGACCATCTCCCTTCAAGTGT...GATTGTTGGAGAACACAGGAATAATTCAGATCTGATCAAGATTTCAGTCTGTTT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000039562.8 ENSMUST00000165015.9 |
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| CDS-3UTR TCA 90 bp | AAACAGACTGAAATCTTGATCAGATCTGAATTATTCCTGTGTTCTCCAACAATCCAAGTCTCGAAACTCTaGAAGAGGGACTCAAAGGCA | + |
|
Preference number: 4 (lower is better) Translates to: KQTEILIRSELFLCSPTIQVSKL*KRDSKA Trigger: TGCCTTTGAGTCCCTCTTTCAGAGTTTCGAGACTTG...GATTGTTGGAGAACACAGGAATAATTCAGATCTGATCAAGATTTCAGTCTGTTT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000039562.8 ENSMUST00000165015.9 |
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| CDS-3UTR GCA 90 bp | AAACAGACTGAAATCTTGATCAGATCTGAATTATTCCTGTGTTCTCCAACAATCAAGATGTTGAGAGGCTaGCCCAAATGTCCTTTGCAC | + |
|
Preference number: 4 (lower is better) Translates to: KQTEILIRSELFLCSPTIKMLRG*PKCPLH Trigger: GTGCAAAGGACATTTGGGGCAGCCTCTCAACATCTT...GATTGTTGGAGAACACAGGAATAATTCAGATCTGATCAAGATTTCAGTCTGTTT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000039562.8 ENSMUST00000165015.9 |
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| CDS-3UTR GCA 90 bp | AAACAGACTGAAATCTTGATCAGATCTGAATTATTCCTGTGTTCTCCAACAATCATAGAAGAGAAGACATaGTTGGTGTGCTCGCCTCGA | + |
|
Preference number: 4 (lower is better) Translates to: KQTEILIRSELFLCSPTIIEEKT*LVCSPR Trigger: TCGAGGCGAGCACACCAAGCATGTCTTCTCTTCTAT...GATTGTTGGAGAACACAGGAATAATTCAGATCTGATCAAGATTTCAGTCTGTTT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000039562.8 ENSMUST00000165015.9 |
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| CDS-3UTR GCA 90 bp | AGATCTGAATTATTCCTGTGTTCTCCAACAATCCCATCAAGAAGCAGAACTGTGTTTGCATATAAACTCTaGCACATTGTTCAGTGCCAC | + |
|
Preference number: 4 (lower is better) Translates to: RSELFLCSPTIPSRSRTVFAYKL*HIVQCH Trigger: GTGGCACTGAACAATGTGGCAGAGTTTATATGCAAA...CACAGTTCTGCTTCTTGATGGGATTGTTGGAGAACACAGGAATAATTCAGATCT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000039562.8 ENSMUST00000165015.9 |
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| CDS-3UTR GCA 90 bp | AGATCTGAATTATTCCTGTGTTCTCCAACAATCCCATCAAGAAGCAGAACTGTGTGCCACATTGTTCAGTaGCACCAAACTAACATTTTT | + |
|
Preference number: 4 (lower is better) Translates to: RSELFLCSPTIPSRSRTVCHIVQ*HQTNIF Trigger: AAAAATGTTAGTTTGGTGGCACTGAACAATGTGGCA...CACAGTTCTGCTTCTTGATGGGATTGTTGGAGAACACAGGAATAATTCAGATCT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000039562.8 ENSMUST00000165015.9 |
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| CDS-3UTR CCA 90 bp | AAACAGACTGAAATCTTGATCAGATCTGAATTATTCCTGTGTTCTCCAACAATCCAAACTGCAGCAAATTaGGCATGTGAGGTCTTCTTC | + |
|
Preference number: 4 (lower is better) Translates to: KQTEILIRSELFLCSPTIQTAAN*ACEVFF Trigger: GAAGAAGACCTCACATGCCCAATTTGCTGCAGTTTG...GATTGTTGGAGAACACAGGAATAATTCAGATCTGATCAAGATTTCAGTCTGTTT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000039562.8 ENSMUST00000165015.9 |
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| CDS-3UTR GCA 90 bp | AAACAGACTGAAATCTTGATCAGATCTGAATTATTCCTGTGTTCTCCAACAATCATCCCACAAATCAGCTaGATATCAGTTACGCAGAAG | + |
|
Preference number: 4 (lower is better) Translates to: KQTEILIRSELFLCSPTIIPQIS*ISVTQK Trigger: CTTCTGCGTAACTGATATGCAGCTGATTTGTGGGAT...GATTGTTGGAGAACACAGGAATAATTCAGATCTGATCAAGATTTCAGTCTGTTT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000039562.8 ENSMUST00000165015.9 |
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| CDS-3UTR GCA 90 bp | AGATCTGAATTATTCCTGTGTTCTCCAACAATCCCATCAAGAAGCAGAACTGTGTTCTCCCTGAACTCTTaGATCTGTTGCAAAAATATA | + |
|
Preference number: 4 (lower is better) Translates to: RSELFLCSPTIPSRSRTVFSLNS*ICCKNI Trigger: TATATTTTTGCAACAGATGCAAGAGTTCAGGGAGAA...CACAGTTCTGCTTCTTGATGGGATTGTTGGAGAACACAGGAATAATTCAGATCT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000039562.8 ENSMUST00000165015.9 |
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| CDS-3UTR CCA 90 bp | AAACAGACTGAAATCTTGATCAGATCTGAATTATTCCTGTGTTCTCCAACAATCTGCCAATTCATCAAGTaGAGACCATTCCAGGAATAC | + |
|
Preference number: 4 (lower is better) Translates to: KQTEILIRSELFLCSPTICQFIK*RPFQEY Trigger: GTATTCCTGGAATGGTCTCCACTTGATGAATTGGCA...GATTGTTGGAGAACACAGGAATAATTCAGATCTGATCAAGATTTCAGTCTGTTT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000039562.8 ENSMUST00000165015.9 |
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| CDS-3UTR GCA 90 bp | AAACAGACTGAAATCTTGATCAGATCTGAATTATTCCTGTGTTCTCCAACAATCTTTGCATATAAACTCTaGCACATTGTTCAGTGCCAC | + |
|
Preference number: 4 (lower is better) Translates to: KQTEILIRSELFLCSPTIFAYKL*HIVQCH Trigger: GTGGCACTGAACAATGTGGCAGAGTTTATATGCAAA...GATTGTTGGAGAACACAGGAATAATTCAGATCTGATCAAGATTTCAGTCTGTTT 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000039562.8 ENSMUST00000165015.9 |
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| CDS-3UTR TCA 90 bp | AAACAGACTGAAATCTTGATCAGATCTGAATTATTCCTGTGTTCTCCAACAATCATTTCATTCTTCTTTTaGTCCAAGGTGTGCTGTAAC | + |
|
Preference number: 4 (lower is better) Translates to: KQTEILIRSELFLCSPTIISFFF*SKVCCN Trigger: GTTACAGCACACCTTGGATCAAAAGAAGAATGAAAT...GATTGTTGGAGAACACAGGAATAATTCAGATCTGATCAAGATTTCAGTCTGTTT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000039562.8 ENSMUST00000165015.9 |
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| CDS-3UTR GCA 90 bp | AAACAGACTGAAATCTTGATCAGATCTGAATTATTCCTGTGTTCTCCAACAATCTGCCACATTGTTCAGTaGCACCAAACTAACATTTTT | + |
|
Preference number: 4 (lower is better) Translates to: KQTEILIRSELFLCSPTICHIVQ*HQTNIF Trigger: AAAAATGTTAGTTTGGTGGCACTGAACAATGTGGCA...GATTGTTGGAGAACACAGGAATAATTCAGATCTGATCAAGATTTCAGTCTGTTT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000039562.8 ENSMUST00000165015.9 |
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| CDS-3UTR GCA 90 bp | AAACAGACTGAAATCTTGATCAGATCTGAATTATTCCTGTGTTCTCCAACAATCTTCTCCCTGAACTCTTaGATCTGTTGCAAAAATATA | + |
|
Preference number: 4 (lower is better) Translates to: KQTEILIRSELFLCSPTIFSLNS*ICCKNI Trigger: TATATTTTTGCAACAGATGCAAGAGTTCAGGGAGAA...GATTGTTGGAGAACACAGGAATAATTCAGATCTGATCAAGATTTCAGTCTGTTT 34% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000039562.8 ENSMUST00000165015.9 |
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| CDS TCA 90 bp | CACAGATCCCACAAATCAGCTGCATATCAGTTACGCAGAAGATGTTaGGAGGCTGCCCCAAATGTCCTTTGCACACTGGCATCTTGGGAG | + |
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Preference number: 5 (lower is better) Translates to: HRSHKSAAYQLRRRC*EAAPNVLCTLASWE Trigger: CTCCCAAGATGCCAGTGTGCAAAGGACATTTGGGGCAGCCTCTCAACATCTTCTGCGTAACTGATATGCAGCTGATTTGTGGGATCTGTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000039562.8 ENSMUST00000165015.9 |
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| CDS GCA 90 bp | CCACAAATCAGCTGCATATCAGTTACGCAGAAGATGTTGAGAGGCTaGCCCAAATGTCCTTTGCACACTGGCATCTTGGGAGAAATCTTG | + |
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Preference number: 5 (lower is better) Translates to: PQISCISVTQKMLRG*PKCPLHTGILGEIL Trigger: CAAGATTTCTCCCAAGATGCCAGTGTGCAAAGGACATTTGGGGCAGCCTCTCAACATCTTCTGCGTAACTGATATGCAGCTGATTTGTGG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000039562.8 ENSMUST00000165015.9 |
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| CDS-3UTR CAA 90 bp | AGATCTGAATTATTCCTGTGTTCTCCAACAATCCCATCAAGAAGCAGAACTGTGAAAGCCTCAGCAATGTaGAAGGCCATCCGCTGCTCC | + |
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Preference number: 5 (lower is better) Translates to: RSELFLCSPTIPSRSRTVKASAM*KAIRCS Trigger: GGAGCAGCGGATGGCCTTCAACATTGCTGAGGCTTT...CACAGTTCTGCTTCTTGATGGGATTGTTGGAGAACACAGGAATAATTCAGATCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000039562.8 ENSMUST00000165015.9 |
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| CDS-3UTR CAA 90 bp | AGATCTGAATTATTCCTGTGTTCTCCAACAATCCCATCAAGAAGCAGAACTGTGTTGACCTGCAGACTGTaGACTCCAGTAGCTGAGGTT | + |
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Preference number: 5 (lower is better) Translates to: RSELFLCSPTIPSRSRTVLTCRL*TPVAEV Trigger: AACCTCAGCTACTGGAGTCAACAGTCTGCAGGTCAA...CACAGTTCTGCTTCTTGATGGGATTGTTGGAGAACACAGGAATAATTCAGATCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000039562.8 ENSMUST00000165015.9 |
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| CDS-3UTR CAA 90 bp | AAACAGACTGAAATCTTGATCAGATCTGAATTATTCCTGTGTTCTCCAACAATCAAAGCCTCAGCAATGTaGAAGGCCATCCGCTGCTCC | + |
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Preference number: 5 (lower is better) Translates to: KQTEILIRSELFLCSPTIKASAM*KAIRCS Trigger: GGAGCAGCGGATGGCCTTCAACATTGCTGAGGCTTT...GATTGTTGGAGAACACAGGAATAATTCAGATCTGATCAAGATTTCAGTCTGTTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000039562.8 ENSMUST00000165015.9 |
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| CDS-3UTR CAA 90 bp | AGATCTGAATTATTCCTGTGTTCTCCAACAATCCCATCAAGAAGCAGAACTGTGTGGAGGGCTTTCCTCTaGTTTGTTTCCAAAGTATCC | + |
|
Preference number: 5 (lower is better) Translates to: RSELFLCSPTIPSRSRTVWRAFL*FVSKVS Trigger: GGATACTTTGGAAACAAACAAGAGGAAAGCCCTCCA...CACAGTTCTGCTTCTTGATGGGATTGTTGGAGAACACAGGAATAATTCAGATCT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000039562.8 ENSMUST00000165015.9 |
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| CDS-3UTR CAA 90 bp | AAACAGACTGAAATCTTGATCAGATCTGAATTATTCCTGTGTTCTCCAACAATCGGGTACCAGGGAATCTaGCTAGTGAACACACCTGTG | + |
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Preference number: 5 (lower is better) Translates to: KQTEILIRSELFLCSPTIGYQGI*LVNTPV Trigger: CACAGGTGTGTTCACTAGCAAGATTCCCTGGTACCC...GATTGTTGGAGAACACAGGAATAATTCAGATCTGATCAAGATTTCAGTCTGTTT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000039562.8 ENSMUST00000165015.9 |
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| CDS-3UTR CAA 90 bp | AAACAGACTGAAATCTTGATCAGATCTGAATTATTCCTGTGTTCTCCAACAATCTTGACCTGCAGACTGTaGACTCCAGTAGCTGAGGTT | + |
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Preference number: 5 (lower is better) Translates to: KQTEILIRSELFLCSPTILTCRL*TPVAEV Trigger: AACCTCAGCTACTGGAGTCAACAGTCTGCAGGTCAA...GATTGTTGGAGAACACAGGAATAATTCAGATCTGATCAAGATTTCAGTCTGTTT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000039562.8 ENSMUST00000165015.9 |
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| CDS-3UTR CAA 90 bp | AGATCTGAATTATTCCTGTGTTCTCCAACAATCCCATCAAGAAGCAGAACTGTGTTGCACACTGGCATCTaGGGAGAAATCTTGATTTTG | + |
|
Preference number: 5 (lower is better) Translates to: RSELFLCSPTIPSRSRTVLHTGI*GEILIL Trigger: CAAAATCAAGATTTCTCCCAAGATGCCAGTGTGCAA...CACAGTTCTGCTTCTTGATGGGATTGTTGGAGAACACAGGAATAATTCAGATCT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000039562.8 ENSMUST00000165015.9 |
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| CDS-3UTR CAA 90 bp | AGATCTGAATTATTCCTGTGTTCTCCAACAATCCCATCAAGAAGCAGAACTGTGGGCAAAGGAGTTTCCTaGATTACTTTGATTTTCTCC | + |
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Preference number: 5 (lower is better) Translates to: RSELFLCSPTIPSRSRTVGKGVS*ITLIFS Trigger: GGAGAAAATCAAAGTAATCAAGGAAACTCCTTTGCC...CACAGTTCTGCTTCTTGATGGGATTGTTGGAGAACACAGGAATAATTCAGATCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000039562.8 ENSMUST00000165015.9 |
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| CDS-3UTR CAA 90 bp | AAACAGACTGAAATCTTGATCAGATCTGAATTATTCCTGTGTTCTCCAACAATCGGGCTTTCCTCTTGTTaGTTTCCAAAGTATCCAAGC | + |
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Preference number: 5 (lower is better) Translates to: KQTEILIRSELFLCSPTIGLSSC*FPKYPS Trigger: GCTTGGATACTTTGGAAACAAACAAGAGGAAAGCCC...GATTGTTGGAGAACACAGGAATAATTCAGATCTGATCAAGATTTCAGTCTGTTT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000039562.8 ENSMUST00000165015.9 |
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| CDS-3UTR CAA 90 bp | AGATCTGAATTATTCCTGTGTTCTCCAACAATCCCATCAAGAAGCAGAACTGTGTTTCTCCCTGAACTCTaGCATCTGTTGCAAAAATAT | + |
|
Preference number: 5 (lower is better) Translates to: RSELFLCSPTIPSRSRTVFLPEL*HLLQKY Trigger: ATATTTTTGCAACAGATGCAAGAGTTCAGGGAGAAA...CACAGTTCTGCTTCTTGATGGGATTGTTGGAGAACACAGGAATAATTCAGATCT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000039562.8 ENSMUST00000165015.9 |
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| CDS-3UTR CAA 90 bp | AAACAGACTGAAATCTTGATCAGATCTGAATTATTCCTGTGTTCTCCAACAATCGGCAAAGGAGTTTCCTaGATTACTTTGATTTTCTCC | + |
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Preference number: 5 (lower is better) Translates to: KQTEILIRSELFLCSPTIGKGVS*ITLIFS Trigger: GGAGAAAATCAAAGTAATCAAGGAAACTCCTTTGCC...GATTGTTGGAGAACACAGGAATAATTCAGATCTGATCAAGATTTCAGTCTGTTT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000039562.8 ENSMUST00000165015.9 |
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| CDS GCA 90 bp | GGCAAAGGAGTTTCCTTGATTACTTTGATTTTCTCCCTGAACTCTTaGATCTGTTGCAAAAATATAATAGGTTCTGAGACATCTTTGAAA | + |
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Preference number: 5 (lower is better) Translates to: GKGVSLITLIFSLNS*ICCKNIIGSETSLK Trigger: TTTCAAAGATGTCTCAGAACCTATTATATTTTTGCAACAGATGCAAGAGTTCAGGGAGAAAATCAAAGTAATCAAGGAAACTCCTTTGCC 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000039562.8 ENSMUST00000165015.9 |
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| CDS-3UTR CAA 90 bp | AAACAGACTGAAATCTTGATCAGATCTGAATTATTCCTGTGTTCTCCAACAATCTTTCTCCCTGAACTCTaGCATCTGTTGCAAAAATAT | + |
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Preference number: 5 (lower is better) Translates to: KQTEILIRSELFLCSPTIFLPEL*HLLQKY Trigger: ATATTTTTGCAACAGATGCAAGAGTTCAGGGAGAAA...GATTGTTGGAGAACACAGGAATAATTCAGATCTGATCAAGATTTCAGTCTGTTT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000039562.8 ENSMUST00000165015.9 |
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| CDS CAA 72 bp | CCAGTAGCTGAGGTTTCCTTACGGCAGGTAGGACACTaGAAGGGAGATGGTCTCCACAGGGAATTCCGCACA | + |
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Preference number: 6 (lower is better) Translates to: PVAEVSLRQVGH*KGDGLHREFRT Trigger: TGTGCGGAATTCCCTGTGGAGACCATCTCCCTTCAAGTGTCCTACCTGCCGTAAGGAAACCTCAGCTACTGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000039562.8 ENSMUST00000165015.9 |
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| CDS TCA 72 bp | GAAAGAGCATCTCCCCGGCGCCAAGTCTCGAAACTCTaGAAGAGGGACTCAAAGGCATTCTTTTCTCGAGCG | + |
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Preference number: 6 (lower is better) Translates to: ERASPRRQVSKL*KRDSKAFFSRA Trigger: CGCTCGAGAAAAGAATGCCTTTGAGTCCCTCTTTCAGAGTTTCGAGACTTGGCGCCGGGGAGATGCTCTTTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000039562.8 ENSMUST00000165015.9 |
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| CDS CAA 72 bp | CGCACATTCCCCTCTAAGAGCCCTTCTAAGCATTTTTaGCAGAAGTTGTGTGAGCAGGGCAACACTCGGGGG | + |
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Preference number: 6 (lower is better) Translates to: RTFPSKSPSKHF*QKLCEQGNTRG Trigger: CCCCCGAGTGTTGCCCTGCTCACACAACTTCTGCAAAAAATGCTTAGAAGGGCTCTTAGAGGGGAATGTGCG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000039562.8 ENSMUST00000165015.9 |
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| CDS GCA 72 bp | TGCTCGCCTCGAGTAGCACAGATCCCACAAATCAGCTaGATATCAGTTACGCAGAAGATGTTGAGAGGCTGC | + |
|
Preference number: 6 (lower is better) Translates to: CSPRVAQIPQIS*ISVTQKMLRGC Trigger: GCAGCCTCTCAACATCTTCTGCGTAACTGATATGCAGCTGATTTGTGGGATCTGTGCTACTCGAGGCGAGCA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000039562.8 ENSMUST00000165015.9 |
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| CDS CAA 90 bp | GCACAGATCCCACAAATCAGCTGCATATCAGTTACGCAGAAGATGTaGAGAGGCTGCCCCAAATGTCCTTTGCACACTGGCATCTTGGGA | + |
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Preference number: 6 (lower is better) Translates to: AQIPQISCISVTQKM*RGCPKCPLHTGILG Trigger: TCCCAAGATGCCAGTGTGCAAAGGACATTTGGGGCAGCCTCTCAACATCTTCTGCGTAACTGATATGCAGCTGATTTGTGGGATCTGTGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000039562.8 ENSMUST00000165015.9 |
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| CDS GCA 72 bp | AGCTGCATATCAGTTACGCAGAAGATGTTGAGAGGCTaGCCCAAATGTCCTTTGCACACTGGCATCTTGGGA | + |
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Preference number: 6 (lower is better) Translates to: SCISVTQKMLRG*PKCPLHTGILG Trigger: TCCCAAGATGCCAGTGTGCAAAGGACATTTGGGGCAGCCTCTCAACATCTTCTGCGTAACTGATATGCAGCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000039562.8 ENSMUST00000165015.9 |
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| CDS TCA 72 bp | CACAAATCAGCTGCATATCAGTTACGCAGAAGATGTTaGGAGGCTGCCCCAAATGTCCTTTGCACACTGGCA | + |
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Preference number: 6 (lower is better) Translates to: HKSAAYQLRRRC*EAAPNVLCTLA Trigger: TGCCAGTGTGCAAAGGACATTTGGGGCAGCCTCTCAACATCTTCTGCGTAACTGATATGCAGCTGATTTGTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000039562.8 ENSMUST00000165015.9 |
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| CDS CAA 90 bp | TTTACTTTATCTGAATCCTTCGTGAGTAACTGGAGGGCTTTCCTCTaGTTTGTTTCCAAAGTATCCAAGCGGGAAAGAGCATCTCCCCGG | + |
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Preference number: 6 (lower is better) Translates to: FTLSESFVSNWRAFL*FVSKVSKRERASPR Trigger: CCGGGGAGATGCTCTTTCCCGCTTGGATACTTTGGAAACAAACAAGAGGAAAGCCCTCCAGTTACTCACGAAGGATTCAGATAAAGTAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000039562.8 ENSMUST00000165015.9 |
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| CDS CAA 72 bp | TCTGAATCCTTCGTGAGTAACTGGAGGGCTTTCCTCTaGTTTGTTTCCAAAGTATCCAAGCGGGAAAGAGCA | + |
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Preference number: 6 (lower is better) Translates to: SESFVSNWRAFL*FVSKVSKRERA Trigger: TGCTCTTTCCCGCTTGGATACTTTGGAAACAAACAAGAGGAAAGCCCTCCAGTTACTCACGAAGGATTCAGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000039562.8 ENSMUST00000165015.9 |
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| CDS CAA 72 bp | ATAGGTTCTGAGACATCTTTGAAAGCCTCAGCAATGTaGAAGGCCATCCGCTGCTCCTGTAAAATAGTGTTG | + |
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Preference number: 6 (lower is better) Translates to: IGSETSLKASAM*KAIRCSCKIVL Trigger: CAACACTATTTTACAGGAGCAGCGGATGGCCTTCAACATTGCTGAGGCTTTCAAAGATGTCTCAGAACCTAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000039562.8 ENSMUST00000165015.9 |
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| CDS CAA 90 bp | AAGATGTTGAGAGGCTGCCCCAAATGTCCTTTGCACACTGGCATCTaGGGAGAAATCTTGATTTTGTTGTATTTCTCCACGATACCCTTT | + |
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Preference number: 6 (lower is better) Translates to: KMLRGCPKCPLHTGI*GEILILLYFSTIPF Trigger: AAAGGGTATCGTGGAGAAATACAACAAAATCAAGATTTCTCCCAAGATGCCAGTGTGCAAAGGACATTTGGGGCAGCCTCTCAACATCTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000039562.8 ENSMUST00000165015.9 |
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| CDS CAA 90 bp | ATATCAGTTACGCAGAAGATGTTGAGAGGCTGCCCCAAATGTCCTTaGCACACTGGCATCTTGGGAGAAATCTTGATTTTGTTGTATTTC | + |
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Preference number: 6 (lower is better) Translates to: ISVTQKMLRGCPKCP*HTGILGEILILLYF Trigger: GAAATACAACAAAATCAAGATTTCTCCCAAGATGCCAGTGTGCAAAGGACATTTGGGGCAGCCTCTCAACATCTTCTGCGTAACTGATAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000039562.8 ENSMUST00000165015.9 |
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| CDS CCA 72 bp | AACTCCTTTACTTTATCTGAATCCTTCGTGAGTAACTaGAGGGCTTTCCTCTTGTTTGTTTCCAAAGTATCC | + |
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Preference number: 6 (lower is better) Translates to: NSFTLSESFVSN*RAFLLFVSKVS Trigger: GGATACTTTGGAAACAAACAAGAGGAAAGCCCTCCAGTTACTCACGAAGGATTCAGATAAAGTAAAGGAGTT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000039562.8 ENSMUST00000165015.9 |
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