Pregenerated sensors for TRIM10 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000073400Ensembl transcript IDs: ENSMUST00000060524.11
Found 75 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | AAGGTCCCAGATACCCGAGTATCTGATGGGCACTGGGGAAAGGCTTaGACAATGAAGAAACTAAAGGTCCTACCACTTTGTCCCTTACTG | + |
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Preference number: 1 (lower is better) Translates to: KVPDTRVSDGHWGKA*TMKKLKVLPLCPLL Trigger: CAGTAAGGGACAAAGTGGTAGGACCTTTAGTTTCTTCATTGTTCAAGCCTTTCCCCAGTGCCCATCAGATACTCGGGTATCTGGGACCTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060524.11 |
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| 3UTR-3UTR GCA 90 bp | GTGAGAACAGCCAGCGCAGCCAAGGTCCCAGATACCCGAGTATCTGATGGGCACGTCTGCTCCCAAGGGTaGTTGATTCCAGTCTCATAC | + |
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Preference number: 2 (lower is better) Translates to: VRTASAAKVPDTRVSDGHVCSQG*LIPVSY Trigger: GTATGAGACTGGAATCAAGCACCCTTGGGAGCAGAC...GTGCCCATCAGATACTCGGGTATCTGGGACCTTGGCTGCGCTGGCTGTTCTCAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060524.11 |
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| 3UTR-3UTR GCA 90 bp | CCAAGGTCCCAGATACCCGAGTATCTGATGGGCACTGGGGAAAGGCTTGAACAAACCCAGCCGAGGGTCTaGTCCCAAGGGTGCTTGATT | + |
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Preference number: 2 (lower is better) Translates to: PRSQIPEYLMGTGERLEQTQPRV*SQGCLI Trigger: AATCAAGCACCCTTGGGAGCAGACCCTCGGCTGGGT...TTGTTCAAGCCTTTCCCCAGTGCCCATCAGATACTCGGGTATCTGGGACCTTGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060524.11 |
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| 3UTR-3UTR TCA 90 bp | GTTGATTACAGGGCTTCACCTGGAATCCAGGTCTCGAGGCTTAAAATCCAGCACCACTTTGTCCCTTACTaGCACATGCCAAACAATGTC | + |
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Preference number: 2 (lower is better) Translates to: VDYRASPGIQVSRLKIQHHFVPY*HMPNNV Trigger: GACATTGTTTGGCATGTGTCAGTAAGGGACAAAGTG...GTGCTGGATTTTAAGCCTCGAGACCTGGATTCCAGGTGAAGCCCTGTAATCAAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060524.11 |
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| 3UTR-3UTR GCA 90 bp | TTTTGTTTGAAATCACACAGCTGGTTGATTACAGGGCTTCACCTGGAATCCAGGGTACATCTATGTCTGTaGCCATTGATGCCAATGGTG | + |
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Preference number: 2 (lower is better) Translates to: FCLKSHSWLITGLHLESRVHLCL*PLMPMV Trigger: CACCATTGGCATCAATGGGCACAGACATAGATGTAC...CCTGGATTCCAGGTGAAGCCCTGTAATCAACCAGCTGTGTGATTTCAAACAAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060524.11 |
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| 3UTR TCA 72 bp | AGCCAGCGCAGCCAAGGTCCCAGATACCCGAGTATCTaGTGGGCACTGGGGAAAGGCTTGAACAATGAAGAA | + |
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Preference number: 3 (lower is better) Translates to: SQRSQGPRYPSI*WALGKGLNNEE Trigger: TTCTTCATTGTTCAAGCCTTTCCCCAGTGCCCATCAGATACTCGGGTATCTGGGACCTTGGCTGCGCTGGCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060524.11 |
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| 3UTR-3UTR CAA 90 bp | ACAATGAAGAAACTAAAGGTCCTACCACTTTGTCCCTTACTGACACATGCCAAAAAATTCACTTTGTGCTaGGTGACCCAGCCGAGGGTC | + |
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Preference number: 3 (lower is better) Translates to: TMKKLKVLPLCPLLTHAKKFTLC*VTQPRV Trigger: GACCCTCGGCTGGGTCACCAAGCACAAAGTGAATTT...TTTGGCATGTGTCAGTAAGGGACAAAGTGGTAGGACCTTTAGTTTCTTCATTGT 46% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt. Matches the following 1 transcripts: ENSMUST00000060524.11 |
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| 3UTR TCA 72 bp | GATACCCGAGTATCTGATGGGCACTGGGGAAAGGCTTaGACAATGAAGAAACTAAAGGTCCTACCACTTTGT | + |
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Preference number: 3 (lower is better) Translates to: DTRVSDGHWGKA*TMKKLKVLPLC Trigger: ACAAAGTGGTAGGACCTTTAGTTTCTTCATTGTTCAAGCCTTTCCCCAGTGCCCATCAGATACTCGGGTATC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060524.11 |
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| 3UTR CCA 72 bp | AATGAAGAGGCAAAGTTTTGTTTGAAATCACACAGCTaGTTGATTACAGGGCTTCACCTGGAATCCAGGTCT | + |
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Preference number: 3 (lower is better) Translates to: NEEAKFCLKSHS*LITGLHLESRS Trigger: AGACCTGGATTCCAGGTGAAGCCCTGTAATCAACCAGCTGTGTGATTTCAAACAAAACTTTGCCTCTTCATT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060524.11 |
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| CDS-3UTR CCA 90 bp | GTGAGAACAGCCAGCGCAGCCAAGGTCCCAGATACCCGAGTATCTGATGGGCACCCTGCCGCAGAGGGATaGCCTGTTGGGGGAAGTCCC | + |
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Preference number: 4 (lower is better) Translates to: VRTASAAKVPDTRVSDGHPAAEG*PVGGSP Trigger: GGGACTTCCCCCAACAGGCCATCCCTCTGCGGCAGG...GTGCCCATCAGATACTCGGGTATCTGGGACCTTGGCTGCGCTGGCTGTTCTCAC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000060524.11 |
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| CDS-3UTR CCA 90 bp | CCAAGGTCCCAGATACCCGAGTATCTGATGGGCACTGGGGAAAGGCTTGAACAACCTCCAGGCCTCGCGTaGACGCCAGCTGAAGGCGCT | + |
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Preference number: 4 (lower is better) Translates to: PRSQIPEYLMGTGERLEQPPGLA*TPAEGA Trigger: AGCGCCTTCAGCTGGCGTCCACGCGAGGCCTGGAGG...TTGTTCAAGCCTTTCCCCAGTGCCCATCAGATACTCGGGTATCTGGGACCTTGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060524.11 |
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| CDS-3UTR GCA 90 bp | CCAAGGTCCCAGATACCCGAGTATCTGATGGGCACTGGGGAAAGGCTTGAACAACTGGCTCCCTCAGGGTaGCTTGGCAGATGGGGCAGT | + |
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Preference number: 4 (lower is better) Translates to: PRSQIPEYLMGTGERLEQLAPSG*LGRWGS Trigger: ACTGCCCCATCTGCCAAGGCACCCTGAGGGAGCCAG...TTGTTCAAGCCTTTCCCCAGTGCCCATCAGATACTCGGGTATCTGGGACCTTGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000060524.11 |
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| CDS-3UTR CCA 90 bp | GTTGATTACAGGGCTTCACCTGGAATCCAGGTCTCGAGGCTTAAAATCCAGCACGGGCCGGAAGCTCCCTaGGCGGAAGGGCTCTTTGCA | + |
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Preference number: 4 (lower is better) Translates to: VDYRASPGIQVSRLKIQHGPEAP*AEGLFA Trigger: TGCAAAGAGCCCTTCCGCCCAGGGAGCTTCCGGCCC...GTGCTGGATTTTAAGCCTCGAGACCTGGATTCCAGGTGAAGCCCTGTAATCAAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060524.11 |
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| CDS-3UTR CCA 90 bp | GTGAGAACAGCCAGCGCAGCCAAGGTCCCAGATACCCGAGTATCTGATGGGCACTGTTGCTGCAGGAACTaGCTCAGATGCGCAAACTGT | + |
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Preference number: 4 (lower is better) Translates to: VRTASAAKVPDTRVSDGHCCCRN*LRCANC Trigger: ACAGTTTGCGCATCTGAGCCAGTTCCTGCAGCAACA...GTGCCCATCAGATACTCGGGTATCTGGGACCTTGGCTGCGCTGGCTGTTCTCAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060524.11 |
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| CDS-3UTR CCA 90 bp | TTGATGCCAATGGTGAGAACAGCCAGCGCAGCCAAGGTCCCAGATACCCGAGTAAGCTCAGGGAAAAACTaGACCCTCTGCCCCAGAGTC | + |
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Preference number: 4 (lower is better) Translates to: LMPMVRTASAAKVPDTRVSSGKN*TLCPRV Trigger: GACTCTGGGGCAGAGGGTCCAGTTTTTCCCTGAGCT...TACTCGGGTATCTGGGACCTTGGCTGCGCTGGCTGTTCTCACCATTGGCATCAA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000060524.11 |
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| CDS-3UTR TCA 90 bp | TGGTTGATTACAGGGCTTCACCTGGAATCCAGGTCTCGAGGCTTAAAATCCAGCTGCAGAGCGGGCAGCTaGGGGACTCCTCTGATTCTG | + |
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Preference number: 4 (lower is better) Translates to: WLITGLHLESRSRGLKSSCRAGS*GTPLIL Trigger: CAGAATCAGAGGAGTCCCTCAGCTGCCCGCTCTGCA...GCTGGATTTTAAGCCTCGAGACCTGGATTCCAGGTGAAGCCCTGTAATCAACCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000060524.11 |
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| CDS-3UTR TCA 90 bp | TACAGGGCTTCACCTGGAATCCAGGTCTCGAGGCTTAAAATCCAGCACTGTTTGAGGAAGCGCACAGTGTaGGCCCCATGCTGTCCGGTT | + |
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Preference number: 4 (lower is better) Translates to: YRASPGIQVSRLKIQHCLRKRTV*APCCPV Trigger: AACCGGACAGCATGGGGCTCACACTGTGCGCTTCCT...CAAACAGTGCTGGATTTTAAGCCTCGAGACCTGGATTCCAGGTGAAGCCCTGTA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000060524.11 |
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| CDS-3UTR CCA 90 bp | TTGATGCCAATGGTGAGAACAGCCAGCGCAGCCAAGGTCCCAGATACCCGAGTAAAGTCCCGGATCCTTTaGCCCAGCTCTGGGGATATA | + |
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Preference number: 4 (lower is better) Translates to: LMPMVRTASAAKVPDTRVKSRIL*PSSGDI Trigger: TATATCCCCAGAGCTGGGCCAAAGGATCCGGGACTT...TACTCGGGTATCTGGGACCTTGGCTGCGCTGGCTGTTCTCACCATTGGCATCAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060524.11 |
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| CDS-3UTR TCA 90 bp | ACTGTTTGTACATCTATGTCTGTGCCCATTGATGCCAATGGTGAGAACAGCCAGCCTCAATCAGGGTGCTaGACCGGCAGATCTCCCCAG | + |
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Preference number: 4 (lower is better) Translates to: TVCTSMSVPIDANGENSQPQSGC*TGRSPQ Trigger: CTGGGGAGATCTGCCGGTTCAGCACCCTGATTGAGG...CTGGCTGTTCTCACCATTGGCATCAATGGGCACAGACATAGATGTACAAACAGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060524.11 |
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| CDS-3UTR GCA 90 bp | GTTGATTACAGGGCTTCACCTGGAATCCAGGTCTCGAGGCTTAAAATCCAGCACCACCTACAGTGCAGCTaGCTCCATGGGCCAAGTCAA | + |
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Preference number: 4 (lower is better) Translates to: VDYRASPGIQVSRLKIQHHLQCS*LHGPSQ Trigger: TTGACTTGGCCCATGGAGGCAGCTGCACTGTAGGTG...GTGCTGGATTTTAAGCCTCGAGACCTGGATTCCAGGTGAAGCCCTGTAATCAAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060524.11 |
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| CDS-3UTR GCA 90 bp | TCACACAGCTGGTTGATTACAGGGCTTCACCTGGAATCCAGGTCTCGAGGCTTATCAGAGGAGGGAAACTaGACCTTCCTGACAGCTCAG | + |
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Preference number: 4 (lower is better) Translates to: SHSWLITGLHLESRSRGLSEEGN*TFLTAQ Trigger: CTGAGCTGTCAGGAAGGTGCAGTTTCCCTCCTCTGA...TAAGCCTCGAGACCTGGATTCCAGGTGAAGCCCTGTAATCAACCAGCTGTGTGA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060524.11 |
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| CDS-3UTR CCA 90 bp | GTTGATTACAGGGCTTCACCTGGAATCCAGGTCTCGAGGCTTAAAATCCAGCACACAGTCAATGGTGACTaGCTCCCTCAGGGTGCCTTG | + |
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Preference number: 4 (lower is better) Translates to: VDYRASPGIQVSRLKIQHTVNGD*LPQGAL Trigger: CAAGGCACCCTGAGGGAGCCAGTCACCATTGACTGT...GTGCTGGATTTTAAGCCTCGAGACCTGGATTCCAGGTGAAGCCCTGTAATCAAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060524.11 |
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| CDS-3UTR GCA 90 bp | GGCTTGAACAATGAAGAAACTAAAGGTCCTACCACTTTGTCCCTTACTGACACACCTGTAGGGACCTGCTaGGTCCTCCAGGAAGCGCAC | + |
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Preference number: 4 (lower is better) Translates to: GLNNEETKGPTTLSLTDTPVGTC*VLQEAH Trigger: GTGCGCTTCCTGGAGGACGCAGCAGGTCCCTACAGG...TGTGTCAGTAAGGGACAAAGTGGTAGGACCTTTAGTTTCTTCATTGTTCAAGCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060524.11 |
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| CDS-3UTR CCA 90 bp | GAGGCAAAGTTTTGTTTGAAATCACACAGCTGGTTGATTACAGGGCTTCACCTGTCCCTCAGGGTGCCTTaGCAGATGGGGCAGTTGACC | + |
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Preference number: 4 (lower is better) Translates to: EAKFCLKSHSWLITGLHLSLRVP*QMGQLT Trigger: GGTCAACTGCCCCATCTGCCAAGGCACCCTGAGGGA...CAGGTGAAGCCCTGTAATCAACCAGCTGTGTGATTTCAAACAAAACTTTGCCTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000060524.11 |
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| CDS-3UTR GCA 90 bp | GAAGAGGCAAAGTTTTGTTTGAAATCACACAGCTGGTTGATTACAGGGCTTCACTTCCCTGTAGGGACCTaGTGCGTCCTCCAGGAAGCG | + |
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Preference number: 4 (lower is better) Translates to: EEAKFCLKSHSWLITGLHFPVGT*CVLQEA Trigger: CGCTTCCTGGAGGACGCAGCAGGTCCCTACAGGGAA...GTGAAGCCCTGTAATCAACCAGCTGTGTGATTTCAAACAAAACTTTGCCTCTTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060524.11 |
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| CDS-3UTR CCA 90 bp | TTTGAAATCACACAGCTGGTTGATTACAGGGCTTCACCTGGAATCCAGGTCTCGGGCAGATCTCCCCAGTaGCCAGGGAATCAAACTCTT | + |
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Preference number: 4 (lower is better) Translates to: FEITQLVDYRASPGIQVSGRSPQ*PGNQTL Trigger: AAGAGTTTGATTCCCTGGCCACTGGGGAGATCTGCC...CGAGACCTGGATTCCAGGTGAAGCCCTGTAATCAACCAGCTGTGTGATTTCAAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060524.11 |
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| CDS-3UTR TCA 90 bp | GAGGCAAAGTTTTGTTTGAAATCACACAGCTGGTTGATTACAGGGCTTCACCTGCTCTTGGTGGCCACCTaGGTCAGGAGCACCTGTATT | + |
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Preference number: 4 (lower is better) Translates to: EAKFCLKSHSWLITGLHLLLVAT*VRSTCI Trigger: AATACAGGTGCTCCTGACTCAGGTGGCCACCAAGAG...CAGGTGAAGCCCTGTAATCAACCAGCTGTGTGATTTCAAACAAAACTTTGCCTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060524.11 |
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| CDS-3UTR CCA 90 bp | AAACTAAAGGTCCTACCACTTTGTCCCTTACTGACACATGCCAAACAATGTCTACCGTCAGGAGCCCCCTaGCTGTCCTCTTGTTCTTCT | + |
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Preference number: 4 (lower is better) Translates to: KLKVLPLCPLLTHAKQCLPSGAP*LSSCSS Trigger: AGAAGAACAAGAGGACAGCCAGGGGGCTCCTGACGG...TAGACATTGTTTGGCATGTGTCAGTAAGGGACAAAGTGGTAGGACCTTTAGTTT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000060524.11 |
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| CDS-3UTR GCA 90 bp | AAACTAAAGGTCCTACCACTTTGTCCCTTACTGACACATGCCAAACAATGTCTAGCTAAGAGGGCAGTCTaGTGTTGCTGCAGGAACTGG | + |
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Preference number: 4 (lower is better) Translates to: KLKVLPLCPLLTHAKQCLAKRAV*CCCRNW Trigger: CCAGTTCCTGCAGCAACAGCAGACTGCCCTCTTAGC...TAGACATTGTTTGGCATGTGTCAGTAAGGGACAAAGTGGTAGGACCTTTAGTTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060524.11 |
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| CDS-3UTR CCA 90 bp | ACAATGAAGAAACTAAAGGTCCTACCACTTTGTCCCTTACTGACACATGCCAAAGTGCAGCTGCCTCCATaGGCCAAGTCAACATTCACC | + |
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Preference number: 4 (lower is better) Translates to: TMKKLKVLPLCPLLTHAKVQLPP*AKSTFT Trigger: GGTGAATGTTGACTTGGCCCATGGAGGCAGCTGCAC...TTTGGCATGTGTCAGTAAGGGACAAAGTGGTAGGACCTTTAGTTTCTTCATTGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060524.11 |
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| CDS-3UTR CCA 90 bp | GAAGAGGCAAAGTTTTGTTTGAAATCACACAGCTGGTTGATTACAGGGCTTCACCCATATTCCCTCCTCTaGTCTCAGCCTCAATTCTCC | + |
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Preference number: 4 (lower is better) Translates to: EEAKFCLKSHSWLITGLHPYSLL*SQPQFS Trigger: GGAGAATTGAGGCTGAGACCAGAGGAGGGAATATGG...GTGAAGCCCTGTAATCAACCAGCTGTGTGATTTCAAACAAAACTTTGCCTCTTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060524.11 |
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| CDS-3UTR GCA 90 bp | GAAGAGGCAAAGTTTTGTTTGAAATCACACAGCTGGTTGATTACAGGGCTTCACTACCACACACAACTGTaGCTCATCCTCCTCGCAAAA | + |
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Preference number: 4 (lower is better) Translates to: EEAKFCLKSHSWLITGLHYHTQL*LILLAK Trigger: TTTTGCGAGGAGGATGAGGCACAGTTGTGTGTGGTA...GTGAAGCCCTGTAATCAACCAGCTGTGTGATTTCAAACAAAACTTTGCCTCTTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060524.11 |
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| CDS-3UTR GCA 90 bp | GCAAAGTTTTGTTTGAAATCACACAGCTGGTTGATTACAGGGCTTCACCTGGAATCAAACTCTTCCTGCTaGTTCAAGATGTCCCCGTCT | + |
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Preference number: 4 (lower is better) Translates to: AKFCLKSHSWLITGLHLESNSSC*FKMSPS Trigger: AGACGGGGACATCTTGAAGCAGCAGGAAGAGTTTGA...TTCCAGGTGAAGCCCTGTAATCAACCAGCTGTGTGATTTCAAACAAAACTTTGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000060524.11 |
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| CDS-3UTR CCA 90 bp | GCAAAGTTTTGTTTGAAATCACACAGCTGGTTGATTACAGGGCTTCACCTGGAAGTTTCCGGCACTTTCTaGTTTCACATCTTATTAGAG | + |
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Preference number: 4 (lower is better) Translates to: AKFCLKSHSWLITGLHLEVSGTF*FHILLE Trigger: CTCTAATAAGATGTGAAACCAGAAAGTGCCGGAAAC...TTCCAGGTGAAGCCCTGTAATCAACCAGCTGTGTGATTTCAAACAAAACTTTGC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060524.11 |
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| 3UTR CAA 72 bp | GGCTTGAACAATGAAGAAACTAAAGGTCCTACCACTTaGTCCCTTACTGACACATGCCAAACAATGTCTAAA | + |
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Preference number: 4 (lower is better) Translates to: GLNNEETKGPTT*SLTDTCQTMSK Trigger: TTTAGACATTGTTTGGCATGTGTCAGTAAGGGACAAAGTGGTAGGACCTTTAGTTTCTTCATTGTTCAAGCC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060524.11 |
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| CDS TCA 90 bp | GCCGGAAGCTCCCTGGGCGGAAGGGCTCTTTGCAGAGCGGGCAGCTaGGGGACTCCTCTGATTCTGGACCTGGGATCTCGCAGTAGCGAG | + |
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Preference number: 5 (lower is better) Translates to: AGSSLGGRALCRAGS*GTPLILDLGSRSSE Trigger: CTCGCTACTGCGAGATCCCAGGTCCAGAATCAGAGGAGTCCCTCAGCTGCCCGCTCTGCAAAGAGCCCTTCCGCCCAGGGAGCTTCCGGC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060524.11 |
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| CDS TCA 90 bp | TGGGCGGAAGGGCTCTTTGCAGAGCGGGCAGCTGAGGGACTCCTCTaGTTCTGGACCTGGGATCTCGCAGTAGCGAGTGAGGCAGCCACG | + |
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Preference number: 5 (lower is better) Translates to: WAEGLFAERAAEGLL*FWTWDLAVASEAAT Trigger: CGTGGCTGCCTCACTCGCTACTGCGAGATCCCAGGTCCAGAATCAGAGGAGTCCCTCAGCTGCCCGCTCTGCAAAGAGCCCTTCCGCCCA 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060524.11 |
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| CDS CCA 90 bp | TCCTGCCGCAGAGGGATGGCCTGTTGGGGGAAGTCCCGGATCCTTTaGCCCAGCTCTGGGGATATAGCCTCGGGTTTCCGGCACTTTCTG | + |
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Preference number: 5 (lower is better) Translates to: SCRRGMACWGKSRIL*PSSGDIASGFRHFL Trigger: CAGAAAGTGCCGGAAACCCGAGGCTATATCCCCAGAGCTGGGCCAAAGGATCCGGGACTTCCCCCAACAGGCCATCCCTCTGCGGCAGGA 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000060524.11 |
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| CDS CCA 90 bp | GAGATACCTGCACCTTCCGGGGTTGCTCCTCCAGGGCCAGCCTTGTaGGGAAAGAACCCAGAGCTGAAACAAAGCCCCAAGCCAGCCTCA | + |
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Preference number: 5 (lower is better) Translates to: EIPAPSGVAPPGPAL*GKNPELKQSPKPAS Trigger: TGAGGCTGGCTTGGGGCTTTGTTTCAGCTCTGGGTTCTTTCCCCACAAGGCTGGCCCTGGAGGAGCAACCCCGGAAGGTGCAGGTATCTC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000060524.11 |
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| CDS-3UTR CAA 90 bp | CCAAGGTCCCAGATACCCGAGTATCTGATGGGCACTGGGGAAAGGCTTGAACAAGGGCGGAAGGGCTCTTaGCAGAGCGGGCAGCTGAGG | + |
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Preference number: 5 (lower is better) Translates to: PRSQIPEYLMGTGERLEQGRKGS*QSGQLR Trigger: CCTCAGCTGCCCGCTCTGCAAAGAGCCCTTCCGCCC...TTGTTCAAGCCTTTCCCCAGTGCCCATCAGATACTCGGGTATCTGGGACCTTGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060524.11 |
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| CDS TCA 90 bp | GGCAGTCTGCTGTTGCTGCAGGAACTGGCTCAGATGCGCAAACTGTaGGATCACCTGTTGCCTCTTGGTGGCCACCTGAGTCAGGAGCAC | + |
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Preference number: 5 (lower is better) Translates to: GSLLLLQELAQMRKL*DHLLPLGGHLSQEH Trigger: GTGCTCCTGACTCAGGTGGCCACCAAGAGGCAACAGGTGATCTCACAGTTTGCGCATCTGAGCCAGTTCCTGCAGCAACAGCAGACTGCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060524.11 |
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| CDS CCA 90 bp | AGGGATGGCCTGTTGGGGGAAGTCCCGGATCCTTTGGCCCAGCTCTaGGGATATAGCCTCGGGTTTCCGGCACTTTCTGGTTTCACATCT | + |
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Preference number: 5 (lower is better) Translates to: RDGLLGEVPDPLAQL*GYSLGFPALSGFTS Trigger: AGATGTGAAACCAGAAAGTGCCGGAAACCCGAGGCTATATCCCCAGAGCTGGGCCAAAGGATCCGGGACTTCCCCCAACAGGCCATCCCT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000060524.11 |
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| CDS-3UTR CAA 90 bp | TTGATGCCAATGGTGAGAACAGCCAGCGCAGCCAAGGTCCCAGATACCCGAGTACCCCTGGCTGTCCTCTaGTTCTTCTCCTCCAGCTCC | + |
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Preference number: 5 (lower is better) Translates to: LMPMVRTASAAKVPDTRVPLAVL*FFSSSS Trigger: GGAGCTGGAGGAGAAGAACAAGAGGACAGCCAGGGG...TACTCGGGTATCTGGGACCTTGGCTGCGCTGGCTGTTCTCACCATTGGCATCAA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060524.11 |
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| CDS CCA 90 bp | AACAGAGTTTTTCCAGAAATGTCTTCATCTCCTGCCGCAGAGGGATaGCCTGTTGGGGGAAGTCCCGGATCCTTTGGCCCAGCTCTGGGG | + |
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Preference number: 5 (lower is better) Translates to: NRVFPEMSSSPAAEG*PVGGSPGSFGPALG Trigger: CCCCAGAGCTGGGCCAAAGGATCCGGGACTTCCCCCAACAGGCCATCCCTCTGCGGCAGGAGATGAAGACATTTCTGGAAAAACTCTGTT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000060524.11 |
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| CDS CCA 90 bp | CCCTCCAGTTGTGCTAAGAGGGCAGTCTGCTGTTGCTGCAGGAACTaGCTCAGATGCGCAAACTGTGAGATCACCTGTTGCCTCTTGGTG | + |
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Preference number: 5 (lower is better) Translates to: PSSCAKRAVCCCCRN*LRCANCEITCCLLV Trigger: CACCAAGAGGCAACAGGTGATCTCACAGTTTGCGCATCTGAGCCAGTTCCTGCAGCAACAGCAGACTGCCCTCTTAGCACAACTGGAGGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060524.11 |
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| CDS-3UTR CAA 90 bp | TACAGGGCTTCACCTGGAATCCAGGTCTCGAGGCTTAAAATCCAGCACTGTTTGCTCCCTCAGGGTGCCTaGGCAGATGGGGCAGTTGAC | + |
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Preference number: 5 (lower is better) Translates to: YRASPGIQVSRLKIQHCLLPQGA*ADGAVD Trigger: GTCAACTGCCCCATCTGCCAAGGCACCCTGAGGGAG...CAAACAGTGCTGGATTTTAAGCCTCGAGACCTGGATTCCAGGTGAAGCCCTGTA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000060524.11 |
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| CDS TCA 90 bp | CCTCTGGTCTCAGCCTCAATTCTCCCTTCCGTCGTACATCTTCTCTaGCCACACCTACAGTGCAGCTGCCTCCATGGGCCAAGTCAACAT | + |
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Preference number: 5 (lower is better) Translates to: PLVSASILPSVVHLL*PHLQCSCLHGPSQH Trigger: ATGTTGACTTGGCCCATGGAGGCAGCTGCACTGTAGGTGTGGTCAGAGAAGATGTACGACGGAAGGGAGAATTGAGGCTGAGACCAGAGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060524.11 |
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| CDS-3UTR CAA 90 bp | TTGATGCCAATGGTGAGAACAGCCAGCGCAGCCAAGGTCCCAGATACCCGAGTACCCTGTAAAACCACATaGGGCCAGAACACAGGTGAC | + |
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Preference number: 5 (lower is better) Translates to: LMPMVRTASAAKVPDTRVPCKTT*GQNTGD Trigger: GTCACCTGTGTTCTGGCCCAATGTGGTTTTACAGGG...TACTCGGGTATCTGGGACCTTGGCTGCGCTGGCTGTTCTCACCATTGGCATCAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060524.11 |
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| CDS-3UTR CAA 90 bp | TTTGAAATCACACAGCTGGTTGATTACAGGGCTTCACCTGGAATCCAGGTCTCGATGTTCTCCACCACATaGGCCAGCTGCCAGTTGGGC | + |
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Preference number: 5 (lower is better) Translates to: FEITQLVDYRASPGIQVSMFSTT*ASCQLG Trigger: GCCCAACTGGCAGCTGGCCAATGTGGTGGAGAACAT...CGAGACCTGGATTCCAGGTGAAGCCCTGTAATCAACCAGCTGTGTGATTTCAAA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060524.11 |
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| CDS CCA 90 bp | GGAACTGGCTCAGATGCGCAAACTGTGAGATCACCTGTTGCCTCTTaGTGGCCACCTGAGTCAGGAGCACCTGTATTCTTTTGTTTTCTC | + |
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Preference number: 5 (lower is better) Translates to: GTGSDAQTVRSPVAS*WPPESGAPVFFCFL Trigger: GAGAAAACAAAAGAATACAGGTGCTCCTGACTCAGGTGGCCACCAAGAGGCAACAGGTGATCTCACAGTTTGCGCATCTGAGCCAGTTCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000060524.11 |
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| CDS-3UTR CAA 90 bp | ACTGTTTGTACATCTATGTCTGTGCCCATTGATGCCAATGGTGAGAACAGCCAGTGGCAGATGGGGCAGTaGACCTCATCTGCCAGGCTA | + |
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Preference number: 5 (lower is better) Translates to: TVCTSMSVPIDANGENSQWQMGQ*TSSARL Trigger: TAGCCTGGCAGATGAGGTCAACTGCCCCATCTGCCA...CTGGCTGTTCTCACCATTGGCATCAATGGGCACAGACATAGATGTACAAACAGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060524.11 |
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| CDS-3UTR CAA 90 bp | TTTTGTTTGAAATCACACAGCTGGTTGATTACAGGGCTTCACCTGGAATCCAGGGAGGGCAGTCTGCTGTaGCTGCAGGAACTGGCTCAG | + |
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Preference number: 5 (lower is better) Translates to: FCLKSHSWLITGLHLESREGSLL*LQELAQ Trigger: CTGAGCCAGTTCCTGCAGCAACAGCAGACTGCCCTC...CCTGGATTCCAGGTGAAGCCCTGTAATCAACCAGCTGTGTGATTTCAAACAAAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060524.11 |
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| CDS CCA 90 bp | ACTGGCTCAGATGCGCAAACTGTGAGATCACCTGTTGCCTCTTGGTaGCCACCTGAGTCAGGAGCACCTGTATTCTTTTGTTTTCTCTTG | + |
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Preference number: 5 (lower is better) Translates to: TGSDAQTVRSPVASW*PPESGAPVFFCFLL Trigger: CAAGAGAAAACAAAAGAATACAGGTGCTCCTGACTCAGGTGGCCACCAAGAGGCAACAGGTGATCTCACAGTTTGCGCATCTGAGCCAGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000060524.11 |
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| CDS-3UTR CAA 90 bp | TTTTGTTTGAAATCACACAGCTGGTTGATTACAGGGCTTCACCTGGAATCCAGGGAAGTCCCGGATCCTTaGGCCCAGCTCTGGGGATAT | + |
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Preference number: 5 (lower is better) Translates to: FCLKSHSWLITGLHLESREVPDP*AQLWGY Trigger: ATATCCCCAGAGCTGGGCCAAAGGATCCGGGACTTC...CCTGGATTCCAGGTGAAGCCCTGTAATCAACCAGCTGTGTGATTTCAAACAAAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000060524.11 |
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| CDS TCA 90 bp | GTCAGGAGCACCTGTATTCTTTTGTTTTCTCTTGACTGGGTTTCTTaGATCTCTTCTCTCTCTTTCCTTAGACACACGAGACACTTCTGT | + |
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Preference number: 5 (lower is better) Translates to: VRSTCILLFSLDWVS*ISSLSFLRHTRHFC Trigger: ACAGAAGTGTCTCGTGTGTCTAAGGAAAGAGAGAGAAGAGATTCAAGAAACCCAGTCAAGAGAAAACAAAAGAATACAGGTGCTCCTGAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000060524.11 |
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| CDS-3UTR CAA 90 bp | GCAAAGTTTTGTTTGAAATCACACAGCTGGTTGATTACAGGGCTTCACCTGGAAAGCACCTGTATTCTTTaGTTTTCTCTTGACTGGGTT | + |
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Preference number: 5 (lower is better) Translates to: AKFCLKSHSWLITGLHLESTCIL*FSLDWV Trigger: AACCCAGTCAAGAGAAAACAAAAGAATACAGGTGCT...TTCCAGGTGAAGCCCTGTAATCAACCAGCTGTGTGATTTCAAACAAAACTTTGC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000060524.11 |
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| CDS CAA 90 bp | GCCAGCTGCCAGTTGGGCCGGAAGCTCCCTGGGCGGAAGGGCTCTTaGCAGAGCGGGCAGCTGAGGGACTCCTCTGATTCTGGACCTGGG | + |
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Preference number: 6 (lower is better) Translates to: ASCQLGRKLPGRKGS*QSGQLRDSSDSGPG Trigger: CCCAGGTCCAGAATCAGAGGAGTCCCTCAGCTGCCCGCTCTGCAAAGAGCCCTTCCGCCCAGGGAGCTTCCGGCCCAACTGGCAGCTGGC 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060524.11 |
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| CDS TCA 72 bp | TCCCTGGGCGGAAGGGCTCTTTGCAGAGCGGGCAGCTaGGGGACTCCTCTGATTCTGGACCTGGGATCTCGC | + |
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Preference number: 6 (lower is better) Translates to: SLGGRALCRAGS*GTPLILDLGSR Trigger: GCGAGATCCCAGGTCCAGAATCAGAGGAGTCCCTCAGCTGCCCGCTCTGCAAAGAGCCCTTCCGCCCAGGGA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060524.11 |
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| CDS CAA 90 bp | CTCCTGCCGCAGAGGGATGGCCTGTTGGGGGAAGTCCCGGATCCTTaGGCCCAGCTCTGGGGATATAGCCTCGGGTTTCCGGCACTTTCT | + |
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Preference number: 6 (lower is better) Translates to: LLPQRDGLLGEVPDP*AQLWGYSLGFPALS Trigger: AGAAAGTGCCGGAAACCCGAGGCTATATCCCCAGAGCTGGGCCAAAGGATCCGGGACTTCCCCCAACAGGCCATCCCTCTGCGGCAGGAG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000060524.11 |
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| CDS CCA 72 bp | AGAGGGATGGCCTGTTGGGGGAAGTCCCGGATCCTTTaGCCCAGCTCTGGGGATATAGCCTCGGGTTTCCGG | + |
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Preference number: 6 (lower is better) Translates to: RGMACWGKSRIL*PSSGDIASGFR Trigger: CCGGAAACCCGAGGCTATATCCCCAGAGCTGGGCCAAAGGATCCGGGACTTCCCCCAACAGGCCATCCCTCT 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000060524.11 |
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| CDS CAA 72 bp | CAGAGGGATGGCCTGTTGGGGGAAGTCCCGGATCCTTaGGCCCAGCTCTGGGGATATAGCCTCGGGTTTCCG | + |
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Preference number: 6 (lower is better) Translates to: QRDGLLGEVPDP*AQLWGYSLGFP Trigger: CGGAAACCCGAGGCTATATCCCCAGAGCTGGGCCAAAGGATCCGGGACTTCCCCCAACAGGCCATCCCTCTG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000060524.11 |
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| CDS TCA 72 bp | GGGCTCTTTGCAGAGCGGGCAGCTGAGGGACTCCTCTaGTTCTGGACCTGGGATCTCGCAGTAGCGAGTGAG | + |
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Preference number: 6 (lower is better) Translates to: GLFAERAAEGLL*FWTWDLAVASE Trigger: CTCACTCGCTACTGCGAGATCCCAGGTCCAGAATCAGAGGAGTCCCTCAGCTGCCCGCTCTGCAAAGAGCCC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060524.11 |
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| CDS CCA 72 bp | AATGTCTTCATCTCCTGCCGCAGAGGGATGGCCTGTTaGGGGAAGTCCCGGATCCTTTGGCCCAGCTCTGGG | + |
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Preference number: 6 (lower is better) Translates to: NVFISCRRGMAC*GKSRILWPSSG Trigger: CCCAGAGCTGGGCCAAAGGATCCGGGACTTCCCCCAACAGGCCATCCCTCTGCGGCAGGAGATGAAGACATT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060524.11 |
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| CDS CCA 72 bp | CTGTTGGGGGAAGTCCCGGATCCTTTGGCCCAGCTCTaGGGATATAGCCTCGGGTTTCCGGCACTTTCTGGT | + |
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Preference number: 6 (lower is better) Translates to: LLGEVPDPLAQL*GYSLGFPALSG Trigger: ACCAGAAAGTGCCGGAAACCCGAGGCTATATCCCCAGAGCTGGGCCAAAGGATCCGGGACTTCCCCCAACAG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000060524.11 |
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| CDS CCA 72 bp | ACCGAGCCCGTCGGTGGTCTTCAGAGAGGAGGAGCTTaGGGTGGGAAGTCTGGGGGTCTAGAGAGATATGAG | + |
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Preference number: 6 (lower is better) Translates to: TEPVGGLQRGGA*GGKSGGLERYE Trigger: CTCATATCTCTCTAGACCCCCAGACTTCCCACCCCAAGCTCCTCCTCTCTGAAGACCACCGACGGGCTCGGT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000060524.11 |
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| CDS GCA 72 bp | CACGAGACACTTCTGTATTTGTTCCCTGTAGGGACCTaGTGCGTCCTCCAGGAAGCGCACAGTGTGAGCCCC | + |
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Preference number: 6 (lower is better) Translates to: HETLLYLFPVGT*CVLQEAHSVSP Trigger: GGGGCTCACACTGTGCGCTTCCTGGAGGACGCAGCAGGTCCCTACAGGGAACAAATACAGAAGTGTCTCGTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060524.11 |
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| CDS CAA 90 bp | ATTAGAGTGCTTCTGATATCCGTCAGGAGCCCCCTGGCTGTCCTCTaGTTCTTCTCCTCCAGCTCCTCAATCAGGGTGCTGAACCGGCAG | + |
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Preference number: 6 (lower is better) Translates to: IRVLLISVRSPLAVL*FFSSSSSIRVLNRQ Trigger: CTGCCGGTTCAGCACCCTGATTGAGGAGCTGGAGGAGAAGAACAAGAGGACAGCCAGGGGGCTCCTGACGGATATCAGAAGCACTCTAAT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000060524.11 |
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| CDS TCA 72 bp | CTGTTGCTGCAGGAACTGGCTCAGATGCGCAAACTGTaGGATCACCTGTTGCCTCTTGGTGGCCACCTGAGT | + |
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Preference number: 6 (lower is better) Translates to: LLLQELAQMRKL*DHLLPLGGHLS Trigger: ACTCAGGTGGCCACCAAGAGGCAACAGGTGATCTCACAGTTTGCGCATCTGAGCCAGTTCCTGCAGCAACAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060524.11 |
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| CDS TCA 72 bp | TCAGCCTCAATTCTCCCTTCCGTCGTACATCTTCTCTaGCCACACCTACAGTGCAGCTGCCTCCATGGGCCA | + |
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Preference number: 6 (lower is better) Translates to: SASILPSVVHLL*PHLQCSCLHGP Trigger: TGGCCCATGGAGGCAGCTGCACTGTAGGTGTGGTCAGAGAAGATGTACGACGGAAGGGAGAATTGAGGCTGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060524.11 |
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| CDS GCA 72 bp | AGGGCAGTCTGCTGTTGCTGCAGGAACTGGCTCAGATaGGCAAACTGTGAGATCACCTGTTGCCTCTTGGTG | + |
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Preference number: 6 (lower is better) Translates to: RAVCCCCRNWLR*ANCEITCCLLV Trigger: CACCAAGAGGCAACAGGTGATCTCACAGTTTGCGCATCTGAGCCAGTTCCTGCAGCAACAGCAGACTGCCCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060524.11 |
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| CDS GCA 72 bp | CCCTCCAGTTGTGCTAAGAGGGCAGTCTGCTGTTGCTaGAGGAACTGGCTCAGATGCGCAAACTGTGAGATC | + |
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Preference number: 6 (lower is better) Translates to: PSSCAKRAVCCC*RNWLRCANCEI Trigger: GATCTCACAGTTTGCGCATCTGAGCCAGTTCCTGCAGCAACAGCAGACTGCCCTCTTAGCACAACTGGAGGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060524.11 |
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| CDS CCA 72 bp | TCTTCTCTGACCACACCTACAGTGCAGCTGCCTCCATaGGCCAAGTCAACATTCACCATCCAAGTGTGTCTC | + |
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Preference number: 6 (lower is better) Translates to: SSLTTPTVQLPP*AKSTFTIQVCL Trigger: GAGACACACTTGGATGGTGAATGTTGACTTGGCCCATGGAGGCAGCTGCACTGTAGGTGTGGTCAGAGAAGA 53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060524.11 |
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| CDS CCA 72 bp | GATGCGCAAACTGTGAGATCACCTGTTGCCTCTTGGTaGCCACCTGAGTCAGGAGCACCTGTATTCTTTTGT | + |
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Preference number: 6 (lower is better) Translates to: DAQTVRSPVASW*PPESGAPVFFC Trigger: ACAAAAGAATACAGGTGCTCCTGACTCAGGTGGCCACCAAGAGGCAACAGGTGATCTCACAGTTTGCGCATC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060524.11 |
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| CDS CCA 72 bp | TCAGATGCGCAAACTGTGAGATCACCTGTTGCCTCTTaGTGGCCACCTGAGTCAGGAGCACCTGTATTCTTT | + |
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Preference number: 6 (lower is better) Translates to: SDAQTVRSPVAS*WPPESGAPVFF Trigger: AAAGAATACAGGTGCTCCTGACTCAGGTGGCCACCAAGAGGCAACAGGTGATCTCACAGTTTGCGCATCTGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060524.11 |
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| CDS TCA 72 bp | GGCACTTTCTGGTTTCACATCTTATTAGAGTGCTTCTaGTATCCGTCAGGAGCCCCCTGGCTGTCCTCTTGT | + |
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Preference number: 6 (lower is better) Translates to: GTFWFHILLECF*YPSGAPWLSSC Trigger: ACAAGAGGACAGCCAGGGGGCTCCTGACGGATATCAGAAGCACTCTAATAAGATGTGAAACCAGAAAGTGCC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000060524.11 |
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