RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for TRIL (Mus musculus)

Ensembl gene IDs: ENSMUSG00000043496

Ensembl transcript IDs: ENSMUST00000127748.5

Found 234 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GTGCATGAAAAATTGCGAGTTCTACAGGAGGTGCCAGATAGCCTGTaGGTTGAAACTAAGAGCGAACAGCCCCAGCTCCCATGCACCATG +
Preference number: 1 (lower is better)
Translates to: VHEKLRVLQEVPDSL*VETKSEQPQLPCTM
Trigger: CATGGTGCATGGGAGCTGGGGCTGTTCGCTCTTAGTTTCAACCCACAGGCTATCTGGCACCTCCTGTAGAACTCGCAATTTTTCATGCAC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
3UTR CCA 90 bp AATGTGGTAAGCGAACTGGAAGGCTGCAGTGCCCTAGGGAGTCACTaGTTACACACACACACACACACACACACACACACACATATCGCA +
Preference number: 1 (lower is better)
Translates to: NVVSELEGCSALGSH*LHTHTHTHTHTHIA
Trigger: TGCGATATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAACCAGTGACTCCCTAGGGCACTGCAGCCTTCCAGTTCGCTTACCACATT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
3UTR GCA 90 bp AAGAGCGACAGTGATGTGGTCAGAGATTACAGACAATTCACCCATTaGTTTGTTTGTTTGGGACAAACTCAGAGCCCCACAAGCAAGCTC +
Preference number: 1 (lower is better)
Translates to: KSDSDVVRDYRQFTH*FVCLGQTQSPTSKL
Trigger: GAGCTTGCTTGTGGGGCTCTGAGTTTGTCCCAAACAAACAAAGCAATGGGTGAATTGTCTGTAATCTCTGACCACATCACTGTCGCTCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
3UTR GCA 90 bp AAGGTAAAACCACAGGCGCAAGCCTGGTGGAGAAGTATTAAATGCTaGCTTCTCCTGAGGATATTATCAGTTACCCAAAGGTCAGCAAAA +
Preference number: 1 (lower is better)
Translates to: KVKPQAQAWWRSIKC*LLLRILSVTQRSAK
Trigger: TTTTGCTGACCTTTGGGTAACTGATAATATCCTCAGGAGAAGGCAGCATTTAATACTTCTCCACCAGGCTTGCGCCTGTGGTTTTACCTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
3UTR GCA 90 bp AATAAGGTAAAACCACAGGCGCAAGCCTGGTGGAGAAGTATTAAATaGTGCCTTCTCCTGAGGATATTATCAGTTACCCAAAGGTCAGCA +
Preference number: 1 (lower is better)
Translates to: NKVKPQAQAWWRSIK*CLLLRILSVTQRSA
Trigger: TGCTGACCTTTGGGTAACTGATAATATCCTCAGGAGAAGGCAGCATTTAATACTTCTCCACCAGGCTTGCGCCTGTGGTTTTACCTTATT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
3UTR CCA 90 bp TCAAGGTTTCCCACTTTTACGCCATTATTCATTTGTCCCCACTCTTaGGTTAGACCACCAAGAACCATCCATTTGCTTTGTGATTACCAG +
Preference number: 1 (lower is better)
Translates to: SRFPTFTPLFICPHS*VRPPRTIHLLCDYQ
Trigger: CTGGTAATCACAAAGCAAATGGATGGTTCTTGGTGGTCTAACCCAAGAGTGGGGACAAATGAATAATGGCGTAAAAGTGGGAAACCTTGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
3UTR TCA 90 bp TTAGACCACCAAGAACCATCCATTTGCTTTGTGATTACCAGGACGTaGTGGATGGCATCTAGATTCACTTTCACATCTAGATTTCACTTG +
Preference number: 1 (lower is better)
Translates to: LDHQEPSICFVITRT*WMASRFTFTSRFHL
Trigger: CAAGTGAAATCTAGATGTGAAAGTGAATCTAGATGCCATCCATCACGTCCTGGTAATCACAAAGCAAATGGATGGTTCTTGGTGGTCTAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
3UTR TCA 90 bp CCTACAGTTTTCTTCTCCTGTTCTATTTCTTATAAAGAGCGACAGTaGTGTGGTCAGAGATTACAGACAATTCACCCATTGCTTTGTTTG +
Preference number: 1 (lower is better)
Translates to: PTVFFSCSISYKERQ*CGQRLQTIHPLLCL
Trigger: CAAACAAAGCAATGGGTGAATTGTCTGTAATCTCTGACCACATCACTGTCGCTCTTTATAAGAAATAGAACAGGAGAAGAAAACTGTAGG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
3UTR-3UTR TCA 90 bp GCGAACAGCCCCAGCTCCCATGCACCATGCACTGTGGATGTAAAACAAGGCCTGGGACCCTCAGGGGCCTaGGGCCTGGAACAGAAGAGT +
Preference number: 2 (lower is better)
Translates to: ANSPSSHAPCTVDVKQGLGPSGA*GLEQKS
Trigger: ACTCTTCTGTTCCAGGCCTCAGGCCCCTGAGGGTCC...CAGGCCTTGTTTTACATCCACAGTGCATGGTGCATGGGAGCTGGGGCTGTTCGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
3UTR-3UTR CCA 90 bp GTGCTGTGCATGAAAAATTGCGAGTTCTACAGGAGGTGCCAGATAGCCTGTGGGCGTGGTGAAGGGCCCTaGACTGTGATGGGTTCCCTG +
Preference number: 2 (lower is better)
Translates to: VLCMKNCEFYRRCQIACGRGEGP*TVMGSL
Trigger: CAGGGAACCCATCACAGTCCAGGGCCCTTCACCACG...CCCACAGGCTATCTGGCACCTCCTGTAGAACTCGCAATTTTTCATGCACAGCAC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
3UTR-3UTR GCA 90 bp CTAAGAGAGGCAACTGTGCTGTGCATGAAAAATTGCGAGTTCTACAGGAGGTGCCAGCCCCAGCTCCCATaGACCATGCACTGTGGATGT +
Preference number: 2 (lower is better)
Translates to: LREATVLCMKNCEFYRRCQPQLP*TMHCGC
Trigger: ACATCCACAGTGCATGGTGCATGGGAGCTGGGGCTG...GCACCTCCTGTAGAACTCGCAATTTTTCATGCACAGCACAGTTGCCTCTCTTAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
3UTR CAA 90 bp ATGAAAAATTGCGAGTTCTACAGGAGGTGCCAGATAGCCTGTGGGTaGAAACTAAGAGCGAACAGCCCCAGCTCCCATGCACCATGCACT +
Preference number: 2 (lower is better)
Translates to: MKNCEFYRRCQIACG*KLRANSPSSHAPCT
Trigger: AGTGCATGGTGCATGGGAGCTGGGGCTGTTCGCTCTTAGTTTCAACCCACAGGCTATCTGGCACCTCCTGTAGAACTCGCAATTTTTCAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
3UTR-3UTR TCA 90 bp TGTTTGTTTGGGACAAACTCAGAGCCCCACAAGCAAGCTCCACCACTGAGCTCAAAGTCACAGGAGCCATaGGCTAAGTGTGTCAAGGTT +
Preference number: 2 (lower is better)
Translates to: CLFGTNSEPHKQAPPLSSKSQEP*AKCVKV
Trigger: AACCTTGACACACTTAGCTCATGGCTCCTGTGACTT...TGAGCTCAGTGGTGGAGCTTGCTTGTGGGGCTCTGAGTTTGTCCCAAACAAACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
3UTR-3UTR TCA 90 bp GTGCTGTGCATGAAAAATTGCGAGTTCTACAGGAGGTGCCAGATAGCCTGTGGGGCAGCAAACACGGAATaGCAGTCTTATTTCCTGTGG +
Preference number: 2 (lower is better)
Translates to: VLCMKNCEFYRRCQIACGAANTE*QSYFLW
Trigger: CCACAGGAAATAAGACTGTCATTCCGTGTTTGCTGC...CCCACAGGCTATCTGGCACCTCCTGTAGAACTCGCAATTTTTCATGCACAGCAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
3UTR-3UTR CCA 90 bp AGTGGTACCTGTTTGTTTACCCTGCCGGTCTTGGCAGAACCCACCAGATCAGTGCCAGGACGTGATGGATaGCATCTAGATTCACTTTCA +
Preference number: 2 (lower is better)
Translates to: SGTCLFTLPVLAEPTRSVPGRDG*HLDSLS
Trigger: TGAAAGTGAATCTAGATGCCATCCATCACGTCCTGG...CACTGATCTGGTGGGTTCTGCCAAGACCGGCAGGGTAAACAAACAGGTACCACT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
3UTR CAA 90 bp GCGACAGTGATGTGGTCAGAGATTACAGACAATTCACCCATTGCTTaGTTTGTTTGGGACAAACTCAGAGCCCCACAAGCAAGCTCCACC +
Preference number: 2 (lower is better)
Translates to: ATVMWSEITDNSPIA*FVWDKLRAPQASST
Trigger: GGTGGAGCTTGCTTGTGGGGCTCTGAGTTTGTCCCAAACAAACAAAGCAATGGGTGAATTGTCTGTAATCTCTGACCACATCACTGTCGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
3UTR-3UTR CCA 90 bp AACCCACCAGATCAGTGGGGTCAGTTGCTGATGGGGATCACTGTGATGGTGGCACATCTAGATTTCACTTaGCAAATGCACAAAAGGGAG +
Preference number: 2 (lower is better)
Translates to: NPPDQWGQLLMGITVMVAHLDFT*QMHKRE
Trigger: CTCCCTTTTGTGCATTTGCCAAGTGAAATCTAGATG...TGCCACCATCACAGTGATCCCCATCAGCAACTGACCCCACTGATCTGGTGGGTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
3UTR-3UTR CCA 90 bp TGGGCAAGGCAGATGGTAAACAGAATCAGTGGTCTTTTCCATACTTTCAACGGGCCACAGGCGCAAGCCTaGTGGAGAAGTATTAAATGC +
Preference number: 2 (lower is better)
Translates to: WARQMVNRISGLFHTFNGPQAQA*WRSIKC
Trigger: GCATTTAATACTTCTCCACCAGGCTTGCGCCTGTGG...CCCGTTGAAAGTATGGAAAAGACCACTGATTCTGTTTACCATCTGCCTTGCCCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
3UTR-3UTR TCA 90 bp CTAAGAGAGGCAACTGTGCTGTGCATGAAAAATTGCGAGTTCTACAGGAGGTGCAATGCTGCCTTCTCCTaGGGATATTATCAGTTACCC +
Preference number: 2 (lower is better)
Translates to: LREATVLCMKNCEFYRRCNAAFS*GYYQLP
Trigger: GGGTAACTGATAATATCCTCAGGAGAAGGCAGCATT...GCACCTCCTGTAGAACTCGCAATTTTTCATGCACAGCACAGTTGCCTCTCTTAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
3UTR-3UTR CCA 90 bp TTCACAGTGACAGTTGAATGCACATGTTCTTCTGGGTTTAGTAGAAACACATATTTACCCTGCCGGTCTTaGCAGAACCCACCAGATCAG +
Preference number: 2 (lower is better)
Translates to: FTVTVECTCSSGFSRNTYLPCRS*QNPPDQ
Trigger: CTGATCTGGTGGGTTCTGCCAAGACCGGCAGGGTAA...ATATGTGTTTCTACTAAACCCAGAAGAACATGTGCATTCAACTGTCACTGTGAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
3UTR-3UTR CCA 90 bp TGGGCAAGGCAGATGGTAAACAGAATCAGTGGTCTTTTCCATACTTTCAACGGGAGAGCGACAGTGATGTaGTCAGAGATTACAGACAAT +
Preference number: 2 (lower is better)
Translates to: WARQMVNRISGLFHTFNGRATVM*SEITDN
Trigger: ATTGTCTGTAATCTCTGACCACATCACTGTCGCTCT...CCCGTTGAAAGTATGGAAAAGACCACTGATTCTGTTTACCATCTGCCTTGCCCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
3UTR-3UTR GCA 90 bp TGGGCAAGGCAGATGGTAAACAGAATCAGTGGTCTTTTCCATACTTTCAACGGGAAACAGAACTCAGTTTaGCATAGAGCAAAGGAGTGT +
Preference number: 2 (lower is better)
Translates to: WARQMVNRISGLFHTFNGKQNSV*HRAKEC
Trigger: ACACTCCTTTGCTCTATGGCAAACTGAGTTCTGTTT...CCCGTTGAAAGTATGGAAAAGACCACTGATTCTGTTTACCATCTGCCTTGCCCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
3UTR-3UTR TCA 90 bp GATGGTAAACAGAATCAGTGGTCTTTTCCATACTTTCAACGGGTCTCAGTTTTACCTATCAAAAGAGTCTaGGTTTATTGGTCAGCTTGT +
Preference number: 2 (lower is better)
Translates to: DGKQNQWSFPYFQRVSVLPIKRV*VYWSAC
Trigger: ACAAGCTGACCAATAAACTCAGACTCTTTTGATAGG...TAAAACTGAGACCCGTTGAAAGTATGGAAAAGACCACTGATTCTGTTTACCATC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
3UTR-3UTR GCA 90 bp GATGGTAAACAGAATCAGTGGTCTTTTCCATACTTTCAACGGGTCTCAGTTTTAAGACAATTCACCCATTaGTTTGTTTGTTTGGGACAA +
Preference number: 2 (lower is better)
Translates to: DGKQNQWSFPYFQRVSVLRQFTH*FVCLGQ
Trigger: TTGTCCCAAACAAACAAAGCAATGGGTGAATTGTCT...TAAAACTGAGACCCGTTGAAAGTATGGAAAAGACCACTGATTCTGTTTACCATC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
3UTR CCA 72 bp TTACCCTGCCGGTCTTGGCAGAACCCACCAGATCAGTaGGGTCAGTTGCTGATGGGGATCACTGTGATGGTG +
Preference number: 3 (lower is better)
Translates to: LPCRSWQNPPDQ*GQLLMGITVMV
Trigger: CACCATCACAGTGATCCCCATCAGCAACTGACCCCACTGATCTGGTGGGTTCTGCCAAGACCGGCAGGGTAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
3UTR CCA 72 bp AGTTCTTCCTCTGAGAAGGCATGGGACCACGGAGAGTaGCTCCTTAAGGCCTGTGAGATCCCAAGGCATTGC +
Preference number: 3 (lower is better)
Translates to: SSSSEKAWDHGE*LLKACEIPRHC
Trigger: GCAATGCCTTGGGATCTCACAGGCCTTAAGGAGCCACTCTCCGTGGTCCCATGCCTTCTCAGAGGAAGAACT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
3UTR CCA 72 bp GAGAGAGTGGTACCTGTTTGTTTACCCTGCCGGTCTTaGCAGAACCCACCAGATCAGTGGGGTCAGTTGCTG +
Preference number: 3 (lower is better)
Translates to: ERVVPVCLPCRS*QNPPDQWGQLL
Trigger: CAGCAACTGACCCCACTGATCTGGTGGGTTCTGCCAAGACCGGCAGGGTAAACAAACAGGTACCACTCTCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
3UTR GCA 72 bp TGGGTTGAAACTAAGAGCGAACAGCCCCAGCTCCCATaGACCATGCACTGTGGATGTAAAACAAGGCCTGGC +
Preference number: 3 (lower is better)
Translates to: WVETKSEQPQLP*TMHCGCKTRPG
Trigger: GCCAGGCCTTGTTTTACATCCACAGTGCATGGTGCATGGGAGCTGGGGCTGTTCGCTCTTAGTTTCAACCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
3UTR CCA 72 bp AGCGAACTGGAAGGCTGCAGTGCCCTAGGGAGTCACTaGTTACACACACACACACACACACACACACACACA +
Preference number: 3 (lower is better)
Translates to: SELEGCSALGSH*LHTHTHTHTHT
Trigger: TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAACCAGTGACTCCCTAGGGCACTGCAGCCTTCCAGTTCGCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
3UTR CCA 72 bp ACCTTACGCTTAATGCCTAACCGTGCAACTCAGAAATaGGTGCTGTCAAGAAGGGGATGGGGGACACTGCTG +
Preference number: 3 (lower is better)
Translates to: TLRLMPNRATQK*VLSRRGWGTLL
Trigger: CAGCAGTGTCCCCCATCCCCTTCTTGACAGCACCCATTTCTGAGTTGCACGGTTAGGCATTAAGCGTAAGGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
3UTR CCA 72 bp AAATTGCGAGTTCTACAGGAGGTGCCAGATAGCCTGTaGGTTGAAACTAAGAGCGAACAGCCCCAGCTCCCA +
Preference number: 3 (lower is better)
Translates to: KLRVLQEVPDSL*VETKSEQPQLP
Trigger: TGGGAGCTGGGGCTGTTCGCTCTTAGTTTCAACCCACAGGCTATCTGGCACCTCCTGTAGAACTCGCAATTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
3UTR-3UTR CAA 90 bp GCGAACAGCCCCAGCTCCCATGCACCATGCACTGTGGATGTAAAACAAGGCCTGAATTCACCCATTGCTTaGTTTGTTTGGGACAAACTC +
Preference number: 3 (lower is better)
Translates to: ANSPSSHAPCTVDVKQGLNSPIA*FVWDKL
Trigger: GAGTTTGTCCCAAACAAACAAAGCAATGGGTGAATT...CAGGCCTTGTTTTACATCCACAGTGCATGGTGCATGGGAGCTGGGGCTGTTCGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
3UTR GCA 72 bp CCACAGGCGCAAGCCTGGTGGAGAAGTATTAAATGCTaGCTTCTCCTGAGGATATTATCAGTTACCCAAAGG +
Preference number: 3 (lower is better)
Translates to: PQAQAWWRSIKC*LLLRILSVTQR
Trigger: CCTTTGGGTAACTGATAATATCCTCAGGAGAAGGCAGCATTTAATACTTCTCCACCAGGCTTGCGCCTGTGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
3UTR-3UTR CAA 90 bp AAATGTGGTAAGCGAACTGGAAGGCTGCAGTGCCCTAGGGAGTCACTGGTTACAACATCTAGATTTCACTaGGCAAATGCACAAAAGGGA +
Preference number: 3 (lower is better)
Translates to: KCGKRTGRLQCPRESLVTTSRFH*ANAQKG
Trigger: TCCCTTTTGTGCATTTGCCAAGTGAAATCTAGATGT...TGTAACCAGTGACTCCCTAGGGCACTGCAGCCTTCCAGTTCGCTTACCACATTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
3UTR-3UTR CAA 90 bp CTAAGAGAGGCAACTGTGCTGTGCATGAAAAATTGCGAGTTCTACAGGAGGTGCCAGACAATTCACCCATaGCTTTGTTTGTTTGGGACA +
Preference number: 3 (lower is better)
Translates to: LREATVLCMKNCEFYRRCQTIHP*LCLFGT
Trigger: TGTCCCAAACAAACAAAGCAATGGGTGAATTGTCTG...GCACCTCCTGTAGAACTCGCAATTTTTCATGCACAGCACAGTTGCCTCTCTTAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
3UTR-3UTR CAA 90 bp CTAAGAGAGGCAACTGTGCTGTGCATGAAAAATTGCGAGTTCTACAGGAGGTGCATCCTCTTCATATTGTaGACACAGGTAGCTTTTCCT +
Preference number: 3 (lower is better)
Translates to: LREATVLCMKNCEFYRRCILFIL*TQVAFP
Trigger: AGGAAAAGCTACCTGTGTCAACAATATGAAGAGGAT...GCACCTCCTGTAGAACTCGCAATTTTTCATGCACAGCACAGTTGCCTCTCTTAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
3UTR CCA 72 bp CCCACTTTTACGCCATTATTCATTTGTCCCCACTCTTaGGTTAGACCACCAAGAACCATCCATTTGCTTTGT +
Preference number: 3 (lower is better)
Translates to: PTFTPLFICPHS*VRPPRTIHLLC
Trigger: ACAAAGCAAATGGATGGTTCTTGGTGGTCTAACCCAAGAGTGGGGACAAATGAATAATGGCGTAAAAGTGGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
3UTR TCA 72 bp TTCTTCTCCTGTTCTATTTCTTATAAAGAGCGACAGTaGTGTGGTCAGAGATTACAGACAATTCACCCATTG +
Preference number: 3 (lower is better)
Translates to: FFSCSISYKERQ*CGQRLQTIHPL
Trigger: CAATGGGTGAATTGTCTGTAATCTCTGACCACATCACTGTCGCTCTTTATAAGAAATAGAACAGGAGAAGAA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS-3UTR GCA 90 bp GGAAGGCTGCAGTGCCCTAGGGAGTCACTGGTTACACACACACACACACACACAAAGCGTGCGCCGCCCTaGGGCCGGGGACTGCGGTGT +
Preference number: 4 (lower is better)
Translates to: GRLQCPRESLVTHTHTHTKRAPP*GRGLRC
Trigger: ACACCGCAGTCCCCGGCCGCAGGGCGGCGCACGCTT...TGTGTGTGTGTGTGTGTGTGTAACCAGTGACTCCCTAGGGCACTGCAGCCTTCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS-3UTR GCA 90 bp GCGAACAGCCCCAGCTCCCATGCACCATGCACTGTGGATGTAAAACAAGGCCTGGCGCGCACACGGTGGTaGGGGGACGGTGCGACTGGA +
Preference number: 4 (lower is better)
Translates to: ANSPSSHAPCTVDVKQGLARTRW*GDGATG
Trigger: TCCAGTCGCACCGTCCCCGCACCACCGTGTGCGCGC...CAGGCCTTGTTTTACATCCACAGTGCATGGTGCATGGGAGCTGGGGCTGTTCGC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS-3UTR CCA 90 bp GGAAGGCTGCAGTGCCCTAGGGAGTCACTGGTTACACACACACACACACACACAGCAGCTCGTGCAGCGTaGCCGAGTCGCTGCGCTCCG +
Preference number: 4 (lower is better)
Translates to: GRLQCPRESLVTHTHTHTAARAA*PSRCAP
Trigger: CGGAGCGCAGCGACTCGGCCACGCTGCACGAGCTGC...TGTGTGTGTGTGTGTGTGTGTAACCAGTGACTCCCTAGGGCACTGCAGCCTTCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS-3UTR GCA 90 bp AACCCACCAGATCAGTGGGGTCAGTTGCTGATGGGGATCACTGTGATGGTGGCATCTCCGCGCAGCTCGTaGAGCGTGGCCGAGTCGCTG +
Preference number: 4 (lower is better)
Translates to: NPPDQWGQLLMGITVMVASPRSS*SVAESL
Trigger: CAGCGACTCGGCCACGCTGCACGAGCTGCGCGGAGA...TGCCACCATCACAGTGATCCCCATCAGCAACTGACCCCACTGATCTGGTGGGTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS-3UTR GCA 90 bp GCGAACAGCCCCAGCTCCCATGCACCATGCACTGTGGATGTAAAACAAGGCCTGTCGCGATCCCCAGGCTaGCAGTGCCAGGAGCACCAG +
Preference number: 4 (lower is better)
Translates to: ANSPSSHAPCTVDVKQGLSRSPG*QCQEHQ
Trigger: CTGGTGCTCCTGGCACTGGCAGCCTGGGGATCGCGA...CAGGCCTTGTTTTACATCCACAGTGCATGGTGCATGGGAGCTGGGGCTGTTCGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS-3UTR CCA 90 bp AACCCACCAGATCAGTGGGGTCAGTTGCTGATGGGGATCACTGTGATGGTGGCATCACGGAGCCGGCCCTaGTGGCCAAAGGTGGCAGGG +
Preference number: 4 (lower is better)
Translates to: NPPDQWGQLLMGITVMVASRSRP*WPKVAG
Trigger: CCCTGCCACCTTTGGCCACCAGGGCCGGCTCCGTGA...TGCCACCATCACAGTGATCCCCATCAGCAACTGACCCCACTGATCTGGTGGGTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS-3UTR TCA 90 bp GGAAGGCTGCAGTGCCCTAGGGAGTCACTGGTTACACACACACACACACACACAGCAGATCCAGCCGTCTaGGCTGCCCCAGACGGTGGA +
Preference number: 4 (lower is better)
Translates to: GRLQCPRESLVTHTHTHTADPAV*AAPDGG
Trigger: TCCACCGTCTGGGGCAGCTCAGACGGCTGGATCTGC...TGTGTGTGTGTGTGTGTGTGTAACCAGTGACTCCCTAGGGCACTGCAGCCTTCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS-3UTR GCA 90 bp AACTCAGAAATGGGTGCTGTCAAGAAGGGGATGGGGGACACTGCTGAACTGTCGGGCTGCGGCTGCGGCTaGAGTGGTAGCTCCTGCGAG +
Preference number: 4 (lower is better)
Translates to: NSEMGAVKKGMGDTAELSGCGCG*SGSSCE
Trigger: CTCGCAGGAGCTACCACTGCAGCCGCAGCCGCAGCC...CGACAGTTCAGCAGTGTCCCCCATCCCCTTCTTGACAGCACCCATTTCTGAGTT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS-3UTR CCA 90 bp TCACTGTTAGCCATAGAACTGGCTGACCTGCACTGCACAGTCCCCCACTGCCAAGCAGAGGGACAAAGGTaGCCGCGTGGCGCAGAGAGG +
Preference number: 4 (lower is better)
Translates to: SLLAIELADLHCTVPHCQAEGQR*PRGAER
Trigger: CCTCTCTGCGCCACGCGGCCACCTTTGTCCCTCTGC...TTGGCAGTGGGGGACTGTGCAGTGCAGGTCAGCCAGTTCTATGGCTAACAGTGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS-3UTR CCA 90 bp TCACTGTTAGCCATAGAACTGGCTGACCTGCACTGCACAGTCCCCCACTGCCAATGCCCACCAGTTCCTTaGCAGCCCCACCCCAGGCCA +
Preference number: 4 (lower is better)
Translates to: SLLAIELADLHCTVPHCQCPPVP*QPHPRP
Trigger: TGGCCTGGGGTGGGGCTGCCAAGGAACTGGTGGGCA...TTGGCAGTGGGGGACTGTGCAGTGCAGGTCAGCCAGTTCTATGGCTAACAGTGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS-3UTR TCA 90 bp ACTAGTTCTTCCTCTGAGAAGGCATGGGACCACGGAGAGTGGCTCCTTAAGGCCAGATTGGCTCGGGTGTaGCGTCCTCTCCCCGGCTTC +
Preference number: 4 (lower is better)
Translates to: TSSSSEKAWDHGEWLLKARLARV*RPLPGF
Trigger: GAAGCCGGGGAGAGGACGTCACACCCGAGCCAATCT...GGCCTTAAGGAGCCACTCTCCGTGGTCCCATGCCTTCTCAGAGGAAGAACTAGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS-3UTR GCA 90 bp GCGAACAGCCCCAGCTCCCATGCACCATGCACTGTGGATGTAAAACAAGGCCTGCCAGGAACGAGCGCCTaGAAGAGGTTGTTCCCCAGG +
Preference number: 4 (lower is better)
Translates to: ANSPSSHAPCTVDVKQGLPGTSA*KRLFPR
Trigger: CCTGGGGAACAACCTCTTGCAGGCGCTCGTTCCTGG...CAGGCCTTGTTTTACATCCACAGTGCATGGTGCATGGGAGCTGGGGCTGTTCGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS-3UTR GCA 90 bp AAATGTGGTAAGCGAACTGGAAGGCTGCAGTGCCCTAGGGAGTCACTGGTTACACTCCTGCGAGAGGCCTaGAGGGGGCGTCATCCCCTC +
Preference number: 4 (lower is better)
Translates to: KCGKRTGRLQCPRESLVTLLREA*RGRHPL
Trigger: GAGGGGATGACGCCCCCTGCAGGCCTCTCGCAGGAG...TGTAACCAGTGACTCCCTAGGGCACTGCAGCCTTCCAGTTCGCTTACCACATTT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS-3UTR GCA 90 bp AACCCACCAGATCAGTGGGGTCAGTTGCTGATGGGGATCACTGTGATGGTGGCACTCCCCGGCTTCTCGTaGAGGTCCAAGGACTGTGGG +
Preference number: 4 (lower is better)
Translates to: NPPDQWGQLLMGITVMVALPGFS*RSKDCG
Trigger: CCCACAGTCCTTGGACCTGCACGAGAAGCCGGGGAG...TGCCACCATCACAGTGATCCCCATCAGCAACTGACCCCACTGATCTGGTGGGTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS-3UTR GCA 90 bp AACTCAGAAATGGGTGCTGTCAAGAAGGGGATGGGGGACACTGCTGAACTGTCGTCCCCAGGCTGCCAGTaGCAGGAGCACCAGAAGCGC +
Preference number: 4 (lower is better)
Translates to: NSEMGAVKKGMGDTAELSSPGCQ*QEHQKR
Trigger: GCGCTTCTGGTGCTCCTGGCACTGGCAGCCTGGGGA...CGACAGTTCAGCAGTGTCCCCCATCCCCTTCTTGACAGCACCCATTTCTGAGTT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS-3UTR CCA 90 bp GCGAACAGCCCCAGCTCCCATGCACCATGCACTGTGGATGTAAAACAAGGCCTGGCGAGGTGCGTGAGCTaGTTTCCACTGAGGGAGAGC +
Preference number: 4 (lower is better)
Translates to: ANSPSSHAPCTVDVKQGLARCVS*FPLRES
Trigger: GCTCTCCCTCAGTGGAAACCAGCTCACGCACCTCGC...CAGGCCTTGTTTTACATCCACAGTGCATGGTGCATGGGAGCTGGGGCTGTTCGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS-3UTR CCA 90 bp GCGAACAGCCCCAGCTCCCATGCACCATGCACTGTGGATGTAAAACAAGGCCTGGGTAGAGAGCCGGACTaGCGGCAAAGATGTCCCCAG +
Preference number: 4 (lower is better)
Translates to: ANSPSSHAPCTVDVKQGLGREPD*RQRCPQ
Trigger: CTGGGGACATCTTTGCCGCCAGTCCGGCTCTCTACC...CAGGCCTTGTTTTACATCCACAGTGCATGGTGCATGGGAGCTGGGGCTGTTCGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS-3UTR CCA 90 bp AGTGGTACCTGTTTGTTTACCCTGCCGGTCTTGGCAGAACCCACCAGATCAGTGCGGGTGGAGTACATGTaGCGAACGTGGACCGGGGCC +
Preference number: 4 (lower is better)
Translates to: SGTCLFTLPVLAEPTRSVRVEYM*RTWTGA
Trigger: GGCCCCGGTCCACGTTCGCCACATGTACTCCACCCG...CACTGATCTGGTGGGTTCTGCCAAGACCGGCAGGGTAAACAAACAGGTACCACT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS-3UTR TCA 90 bp AACCCACCAGATCAGTGGGGTCAGTTGCTGATGGGGATCACTGTGATGGTGGCACGTCCAGCCGTAGCTTaGCCAAACTCTCCAGGCCCT +
Preference number: 4 (lower is better)
Translates to: NPPDQWGQLLMGITVMVARPAVA*PNSPGP
Trigger: AGGGCCTGGAGAGTTTGGTCAAGCTACGGCTGGACG...TGCCACCATCACAGTGATCCCCATCAGCAACTGACCCCACTGATCTGGTGGGTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS-3UTR GCA 90 bp AACCCACCAGATCAGTGGGGTCAGTTGCTGATGGGGATCACTGTGATGGTGGCATGGCGCAGAGAGGGTTaGAGCTCGTTGGCCGAGAGA +
Preference number: 4 (lower is better)
Translates to: NPPDQWGQLLMGITVMVAWRREG*SSLAER
Trigger: TCTCTCGGCCAACGAGCTGCAACCCTCTCTGCGCCA...TGCCACCATCACAGTGATCCCCATCAGCAACTGACCCCACTGATCTGGTGGGTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS-3UTR GCA 90 bp GTGCTGTGCATGAAAAATTGCGAGTTCTACAGGAGGTGCCAGATAGCCTGTGGGACGCGGGGGCCGAGGTaGTGTAGGCTGTTGGCTGAG +
Preference number: 4 (lower is better)
Translates to: VLCMKNCEFYRRCQIACGTRGPR*CRLLAE
Trigger: CTCAGCCAACAGCCTACAGCACCTCGGCCCCCGCGT...CCCACAGGCTATCTGGCACCTCCTGTAGAACTCGCAATTTTTCATGCACAGCAC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS-3UTR GCA 90 bp TGGGCAAGGCAGATGGTAAACAGAATCAGTGGTCTTTTCCATACTTTCAACGGGCCTGCGGCCGGGGACTaGGGTGTTCGCGAACCGCCC +
Preference number: 4 (lower is better)
Translates to: WARQMVNRISGLFHTFNGPAAGD*GVREPP
Trigger: GGGCGGTTCGCGAACACCGCAGTCCCCGGCCGCAGG...CCCGTTGAAAGTATGGAAAAGACCACTGATTCTGTTTACCATCTGCCTTGCCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS-3UTR GCA 90 bp TTTGGGACAAACTCAGAGCCCCACAAGCAAGCTCCACCACTGAGCTCACTGCCCCGCTGGAACTTGGGCTaGTGGCCAAAGCGGTCGAAA +
Preference number: 4 (lower is better)
Translates to: FGTNSEPHKQAPPLSSLPRWNLG*WPKRSK
Trigger: TTTCGACCGCTTTGGCCAGCAGCCCAAGTTCCAGCG...GGGCAGTGAGCTCAGTGGTGGAGCTTGCTTGTGGGGCTCTGAGTTTGTCCCAAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS-3UTR GCA 90 bp AGTGGTACCTGTTTGTTTACCCTGCCGGTCTTGGCAGAACCCACCAGATCAGTGGTGGTGCGGGGACGGTaGGACTGGAAGCCTGAGAAG +
Preference number: 4 (lower is better)
Translates to: SGTCLFTLPVLAEPTRSVVVRGR*DWKPEK
Trigger: CTTCTCAGGCTTCCAGTCGCACCGTCCCCGCACCAC...CACTGATCTGGTGGGTTCTGCCAAGACCGGCAGGGTAAACAAACAGGTACCACT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS-3UTR CCA 90 bp ACTAGTTCTTCCTCTGAGAAGGCATGGGACCACGGAGAGTGGCTCCTTAAGGCCAGCTGCCCCAGACGGTaGAAGTCGAAGGCGGTGATG +
Preference number: 4 (lower is better)
Translates to: TSSSSEKAWDHGEWLLKASCPRR*KSKAVM
Trigger: CATCACCGCCTTCGACTTCCACCGTCTGGGGCAGCT...GGCCTTAAGGAGCCACTCTCCGTGGTCCCATGCCTTCTCAGAGGAAGAACTAGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
3UTR CAA 72 bp CGGTCTTGGCAGAACCCACCAGATCAGTGGGGTCAGTaGCTGATGGGGATCACTGTGATGGTGGCAAGTCCC +
Preference number: 4 (lower is better)
Translates to: RSWQNPPDQWGQ*LMGITVMVASP
Trigger: GGGACTTGCCACCATCACAGTGATCCCCATCAGCAACTGACCCCACTGATCTGGTGGGTTCTGCCAAGACCG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS-3UTR TCA 90 bp TGTTTGTTTGGGACAAACTCAGAGCCCCACAAGCAAGCTCCACCACTGAGCTCAGTGCGACTGGAAGCCTaGGAAGTCCGCGGACACACC +
Preference number: 4 (lower is better)
Translates to: CLFGTNSEPHKQAPPLSSVRLEA*EVRGHT
Trigger: GGTGTGTCCGCGGACTTCTCAGGCTTCCAGTCGCAC...TGAGCTCAGTGGTGGAGCTTGCTTGTGGGGCTCTGAGTTTGTCCCAAACAAACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS-3UTR GCA 90 bp AAATGTGGTAAGCGAACTGGAAGGCTGCAGTGCCCTAGGGAGTCACTGGTTACAGCCTCTGGGGCGAGGTaGGTGAGCTGGTTTCCACTG +
Preference number: 4 (lower is better)
Translates to: KCGKRTGRLQCPRESLVTASGAR*VSWFPL
Trigger: CAGTGGAAACCAGCTCACGCACCTCGCCCCAGAGGC...TGTAACCAGTGACTCCCTAGGGCACTGCAGCCTTCCAGTTCGCTTACCACATTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS-3UTR CCA 90 bp TCACCCATTGCTTTGTTTGTTTGGGACAAACTCAGAGCCCCACAAGCAAGCTCCAGATGTTGGGGGTGCTaGCAGTCGCAGCGCTCCGGG +
Preference number: 4 (lower is better)
Translates to: SPIALFVWDKLRAPQASSRCWGC*QSQRSG
Trigger: CCCGGAGCGCTGCGACTGCCAGCACCCCCAACATCT...GGAGCTTGCTTGTGGGGCTCTGAGTTTGTCCCAAACAAACAAAGCAATGGGTGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS-3UTR CCA 90 bp GGAAGGCTGCAGTGCCCTAGGGAGTCACTGGTTACACACACACACACACACACAGTGCATAGGAGATGTTaGGGGTGCTGGCAGTCGCAG +
Preference number: 4 (lower is better)
Translates to: GRLQCPRESLVTHTHTHTVHRRC*GCWQSQ
Trigger: CTGCGACTGCCAGCACCCCCAACATCTCCTATGCAC...TGTGTGTGTGTGTGTGTGTGTAACCAGTGACTCCCTAGGGCACTGCAGCCTTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS-3UTR GCA 90 bp ACTAGTTCTTCCTCTGAGAAGGCATGGGACCACGGAGAGTGGCTCCTTAAGGCCCGGATCTGGTTGTACTaGAGATCCAGCCGTCTGAGC +
Preference number: 4 (lower is better)
Translates to: TSSSSEKAWDHGEWLLKARIWLY*RSSRLS
Trigger: GCTCAGACGGCTGGATCTGCAGTACAACCAGATCCG...GGCCTTAAGGAGCCACTCTCCGTGGTCCCATGCCTTCTCAGAGGAAGAACTAGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS-3UTR GCA 90 bp AAATGTGGTAAGCGAACTGGAAGGCTGCAGTGCCCTAGGGAGTCACTGGTTACAGTAGGTAGAGCAGGTTaGCCAGGGGAGCGAAGACCG +
Preference number: 4 (lower is better)
Translates to: KCGKRTGRLQCPRESLVTVGRAG*PGERRP
Trigger: CGGTCTTCGCTCCCCTGGGCAACCTGCTCTACCTAC...TGTAACCAGTGACTCCCTAGGGCACTGCAGCCTTCCAGTTCGCTTACCACATTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS-3UTR GCA 90 bp CCCACTTTTACGCCATTATTCATTTGTCCCCACTCTTGGGTTAGACCACCAAGAGCGTGGCCGAGTCGCTaGGCTCCGGCAGGTAGACGA +
Preference number: 4 (lower is better)
Translates to: PTFTPLFICPHSWVRPPRAWPSR*APAGRR
Trigger: TCGTCTACCTGCCGGAGCGCAGCGACTCGGCCACGC...TCTTGGTGGTCTAACCCAAGAGTGGGGACAAATGAATAATGGCGTAAAAGTGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS-3UTR CCA 90 bp GCGAACAGCCCCAGCTCCCATGCACCATGCACTGTGGATGTAAAACAAGGCCTGGCTTCTCGAAGGTCTTaGGGTGGAGAGAACGGATCT +
Preference number: 4 (lower is better)
Translates to: ANSPSSHAPCTVDVKQGLASRRS*GGENGS
Trigger: AGATCCGTTCTCTCCACCCCAAGACCTTCGAGAAGC...CAGGCCTTGTTTTACATCCACAGTGCATGGTGCATGGGAGCTGGGGCTGTTCGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS-3UTR CCA 90 bp GTGTCAAGGTTTCCCACTTTTACGCCATTATTCATTTGTCCCCACTCTTGGGTTAGGCGTGGCAGGTGCTaGAAGACGCGGGGGCCGAGG +
Preference number: 4 (lower is better)
Translates to: VSRFPTFTPLFICPHSWVRRGRC*KTRGPR
Trigger: CCTCGGCCCCCGCGTCTTCCAGCACCTGCCACGCCT...AACCCAAGAGTGGGGACAAATGAATAATGGCGTAAAAGTGGGAAACCTTGACAC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS-3UTR CCA 90 bp TTTGGGACAAACTCAGAGCCCCACAAGCAAGCTCCACCACTGAGCTCACTGCCCGTCAGACACCAGAGGTaGCAAACCAACCCCACTAAC +
Preference number: 4 (lower is better)
Translates to: FGTNSEPHKQAPPLSSLPVRHQR*QTNPTN
Trigger: GTTAGTGGGGTTGGTTTGCCACCTCTGGTGTCTGAC...GGGCAGTGAGCTCAGTGGTGGAGCTTGCTTGTGGGGCTCTGAGTTTGTCCCAAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS-3UTR TCA 90 bp CCCACTTTTACGCCATTATTCATTTGTCCCCACTCTTGGGTTAGACCACCAAGACGCCGGTGCTGTCCATaGAGCGGTCGCAGGGGAACT +
Preference number: 4 (lower is better)
Translates to: PTFTPLFICPHSWVRPPRRRCCP*SGRRGT
Trigger: AGTTCCCCTGCGACCGCTTCATGGACAGCACCGGCG...TCTTGGTGGTCTAACCCAAGAGTGGGGACAAATGAATAATGGCGTAAAAGTGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS-3UTR GCA 90 bp TGTTTGTTTGGGACAAACTCAGAGCCCCACAAGCAAGCTCCACCACTGAGCTCAAGTGCCTCCAAGCTGTaGAGAGGCTCCAGCAGTGTC +
Preference number: 4 (lower is better)
Translates to: CLFGTNSEPHKQAPPLSSSASKL*RGSSSV
Trigger: GACACTGCTGGAGCCTCTGCACAGCTTGGAGGCACT...TGAGCTCAGTGGTGGAGCTTGCTTGTGGGGCTCTGAGTTTGTCCCAAACAAACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS-3UTR GCA 90 bp AAATGTGGTAAGCGAACTGGAAGGCTGCAGTGCCCTAGGGAGTCACTGGTTACACGCAGGTCCAACCATTaGCGTCTAGATCCAGCCGGT +
Preference number: 4 (lower is better)
Translates to: KCGKRTGRLQCPRESLVTRRSNH*RLDPAG
Trigger: ACCGGCTGGATCTAGACGGCAATGGTTGGACCTGCG...TGTAACCAGTGACTCCCTAGGGCACTGCAGCCTTCCAGTTCGCTTACCACATTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS-3UTR CCA 90 bp CTAAGAGAGGCAACTGTGCTGTGCATGAAAAATTGCGAGTTCTACAGGAGGTGCGCAGCGAGCTGGTCTTaGGTACAGCGCGAAGTCCCC +
Preference number: 4 (lower is better)
Translates to: LREATVLCMKNCEFYRRCAASWS*VQREVP
Trigger: GGGGACTTCGCGCTGTACCCAAGACCAGCTCGCTGC...GCACCTCCTGTAGAACTCGCAATTTTTCATGCACAGCACAGTTGCCTCTCTTAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS-3UTR CCA 90 bp AACCCACCAGATCAGTGGGGTCAGTTGCTGATGGGGATCACTGTGATGGTGGCATCGAAGGTCTTGGGGTaGAGAGAACGGATCTGGTTG +
Preference number: 4 (lower is better)
Translates to: NPPDQWGQLLMGITVMVASKVLG*RERIWL
Trigger: CAACCAGATCCGTTCTCTCCACCCCAAGACCTTCGA...TGCCACCATCACAGTGATCCCCATCAGCAACTGACCCCACTGATCTGGTGGGTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS-3UTR CCA 90 bp GTGTCAAGGTTTCCCACTTTTACGCCATTATTCATTTGTCCCCACTCTTGGGTTCAGGTCCAAGGACTGTaGGGCAGAGCCCGGAGCCGC +
Preference number: 4 (lower is better)
Translates to: VSRFPTFTPLFICPHSWVQVQGL*GRARSR
Trigger: GCGGCTCCGGGCTCTGCCCCACAGTCCTTGGACCTG...AACCCAAGAGTGGGGACAAATGAATAATGGCGTAAAAGTGGGAAACCTTGACAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS-3UTR CCA 90 bp TGGGCAAGGCAGATGGTAAACAGAATCAGTGGTCTTTTCCATACTTTCAACGGGGCACCGAGGCGCTGTTaGCGCTCACCGCCTCTACTG +
Preference number: 4 (lower is better)
Translates to: WARQMVNRISGLFHTFNGAPRRC*RSPPLL
Trigger: CAGTAGAGGCGGTGAGCGCCAACAGCGCCTCGGTGC...CCCGTTGAAAGTATGGAAAAGACCACTGATTCTGTTTACCATCTGCCTTGCCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS-3UTR CCA 90 bp CTAAGAGAGGCAACTGTGCTGTGCATGAAAAATTGCGAGTTCTACAGGAGGTGCTACATGTGGCGAACGTaGACCGGGGCCCCTCCCTTC +
Preference number: 4 (lower is better)
Translates to: LREATVLCMKNCEFYRRCYMWRT*TGAPPF
Trigger: GAAGGGAGGGGCCCCGGTCCACGTTCGCCACATGTA...GCACCTCCTGTAGAACTCGCAATTTTTCATGCACAGCACAGTTGCCTCTCTTAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS-3UTR GCA 90 bp CCCACTTTTACGCCATTATTCATTTGTCCCCACTCTTGGGTTAGACCACCAAGAAGGAGATGTTGGGGGTaGTGGCAGTCGCAGCGCTCC +
Preference number: 4 (lower is better)
Translates to: PTFTPLFICPHSWVRPPRRRCWG*WQSQRS
Trigger: GGAGCGCTGCGACTGCCAGCACCCCCAACATCTCCT...TCTTGGTGGTCTAACCCAAGAGTGGGGACAAATGAATAATGGCGTAAAAGTGGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS-3UTR GCA 90 bp AGTGGTACCTGTTTGTTTACCCTGCCGGTCTTGGCAGAACCCACCAGATCAGTGGAAGTCCCCTGTTGGTaGATAGGAGATGTTGGGGGT +
Preference number: 4 (lower is better)
Translates to: SGTCLFTLPVLAEPTRSVEVPCW*IGDVGG
Trigger: ACCCCCAACATCTCCTATGCACCAACAGGGGACTTC...CACTGATCTGGTGGGTTCTGCCAAGACCGGCAGGGTAAACAAACAGGTACCACT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS-3UTR GCA 90 bp AGCGACAGTGATGTGGTCAGAGATTACAGACAATTCACCCATTGCTTTGTTTGTCCGCGGACACACCAGTaGCCATGGAGCGCAGTGGCC +
Preference number: 4 (lower is better)
Translates to: SDSDVVRDYRQFTHCFVCPRTHQ*PWSAVA
Trigger: GGCCACTGCGCTCCATGGGCACTGGTGTGTCCGCGG...ACAAACAAAGCAATGGGTGAATTGTCTGTAATCTCTGACCACATCACTGTCGCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS-3UTR CCA 90 bp TGGGCAAGGCAGATGGTAAACAGAATCAGTGGTCTTTTCCATACTTTCAACGGGTCCCCAAAAGGCCTCTaGGGCGAGGTGCGTGAGCTG +
Preference number: 4 (lower is better)
Translates to: WARQMVNRISGLFHTFNGSPKGL*GEVREL
Trigger: CAGCTCACGCACCTCGCCCCAGAGGCCTTTTGGGGA...CCCGTTGAAAGTATGGAAAAGACCACTGATTCTGTTTACCATCTGCCTTGCCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS-3UTR CCA 90 bp TGTCAAGGTTTCCCACTTTTACGCCATTATTCATTTGTCCCCACTCTTGGGTTACCCCTCCCTTCCGCCTaGCACGCAGCTTCCTCCGCA +
Preference number: 4 (lower is better)
Translates to: CQGFPLLRHYSFVPTLGLPLPSA*HAASSA
Trigger: TGCGGAGGAAGCTGCGTGCCAGGCGGAAGGGAGGGG...TAACCCAAGAGTGGGGACAAATGAATAATGGCGTAAAAGTGGGAAACCTTGACA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS-3UTR CCA 90 bp CTAAGAGAGGCAACTGTGCTGTGCATGAAAAATTGCGAGTTCTACAGGAGGTGCGCAGTGGCCGTCGGGTaGAGTACATGTGGCGAACGT +
Preference number: 4 (lower is better)
Translates to: LREATVLCMKNCEFYRRCAVAVG*STCGER
Trigger: ACGTTCGCCACATGTACTCCACCCGACGGCCACTGC...GCACCTCCTGTAGAACTCGCAATTTTTCATGCACAGCACAGTTGCCTCTCTTAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS-3UTR GCA 90 bp CCCACTCTTGGGTTAGACCACCAAGAACCATCCATTTGCTTTGTGATTACCAGGCGTTGGCGTAAAGGATaGGCAACTTGCGCAGCGGAG +
Preference number: 4 (lower is better)
Translates to: PTLGLDHQEPSICFVITRRWRKG*ATCAAE
Trigger: CTCCGCTGCGCAAGTTGCGCATCCTTTACGCCAACG...CCTGGTAATCACAAAGCAAATGGATGGTTCTTGGTGGTCTAACCCAAGAGTGGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS-3UTR GCA 90 bp CTCTCCCAGACAACAGAAGAAAGGGTTCCCGGGAGAGAGTGGTACCTGTTTGTTCCAAAGGTGGCAGGGTaGAGAGCAGAAAGCTCATTG +
Preference number: 4 (lower is better)
Translates to: LSQTTEERVPGREWYLFVPKVAG*RAESSL
Trigger: CAATGAGCTTTCTGCTCTGCACCCTGCCACCTTTGG...AACAAACAGGTACCACTCTCTCCCGGGAACCCTTTCTTCTGTTGTCTGGGAGAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS-3UTR GCA 90 bp TGTCAAGGTTTCCCACTTTTACGCCATTATTCATTTGTCCCCACTCTTGGGTTATGCAGTGGTAGCTCCTaGGAGAGGCCTGCAGGGGGC +
Preference number: 4 (lower is better)
Translates to: CQGFPLLRHYSFVPTLGLCSGSS*ERPAGG
Trigger: GCCCCCTGCAGGCCTCTCGCAGGAGCTACCACTGCA...TAACCCAAGAGTGGGGACAAATGAATAATGGCGTAAAAGTGGGAAACCTTGACA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS-3UTR CCA 90 bp GTGTCAAGGTTTCCCACTTTTACGCCATTATTCATTTGTCCCCACTCTTGGGTTACAAAGGTGGCCGCGTaGCGCAGAGAGGGTTGCAGC +
Preference number: 4 (lower is better)
Translates to: VSRFPTFTPLFICPHSWVTKVAA*RREGCS
Trigger: GCTGCAACCCTCTCTGCGCCACGCGGCCACCTTTGT...AACCCAAGAGTGGGGACAAATGAATAATGGCGTAAAAGTGGGAAACCTTGACAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS-3UTR CCA 90 bp TGGGCAAGGCAGATGGTAAACAGAATCAGTGGTCTTTTCCATACTTTCAACGGGCGAAGCGCTGGAACTTaGGCTGCTGGCCAAAGCGGT +
Preference number: 4 (lower is better)
Translates to: WARQMVNRISGLFHTFNGRSAGT*AAGQSG
Trigger: ACCGCTTTGGCCAGCAGCCCAAGTTCCAGCGCTTCG...CCCGTTGAAAGTATGGAAAAGACCACTGATTCTGTTTACCATCTGCCTTGCCCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS-3UTR CCA 90 bp AGCGACAGTGATGTGGTCAGAGATTACAGACAATTCACCCATTGCTTTGTTTGTGCCCATGGAGCGCAGTaGCCGTCGGGTGGAGTACAT +
Preference number: 4 (lower is better)
Translates to: SDSDVVRDYRQFTHCFVCAHGAQ*PSGGVH
Trigger: ATGTACTCCACCCGACGGCCACTGCGCTCCATGGGC...ACAAACAAAGCAATGGGTGAATTGTCTGTAATCTCTGACCACATCACTGTCGCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
3UTR CAA 72 bp CCCCACTCTTGGGTTAGACCACCAAGAACCATCCATTaGCTTTGTGATTACCAGGACGTGATGGATGGCATC +
Preference number: 4 (lower is better)
Translates to: PHSWVRPPRTIH*LCDYQDVMDGI
Trigger: GATGCCATCCATCACGTCCTGGTAATCACAAAGCAAATGGATGGTTCTTGGTGGTCTAACCCAAGAGTGGGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS-3UTR GCA 90 bp GTGTCAAGGTTTCCCACTTTTACGCCATTATTCATTTGTCCCCACTCTTGGGTTTTAATGCGCTGCGGTTaGCCACCAGTTCCTTGGCAG +
Preference number: 4 (lower is better)
Translates to: VSRFPTFTPLFICPHSWVLMRCG*PPVPWQ
Trigger: CTGCCAAGGAACTGGTGGGCAACCGCAGCGCATTAA...AACCCAAGAGTGGGGACAAATGAATAATGGCGTAAAAGTGGGAAACCTTGACAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS-3UTR GCA 90 bp GTGTCAAGGTTTCCCACTTTTACGCCATTATTCATTTGTCCCCACTCTTGGGTTACTAACGGACTGGACTaGGCTCTCTTGCTGCTCGGA +
Preference number: 4 (lower is better)
Translates to: VSRFPTFTPLFICPHSWVTNGLD*ALLLLG
Trigger: TCCGAGCAGCAAGAGAGCGCAGTCCAGTCCGTTAGT...AACCCAAGAGTGGGGACAAATGAATAATGGCGTAAAAGTGGGAAACCTTGACAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS-3UTR CCA 90 bp AGCGACAGTGATGTGGTCAGAGATTACAGACAATTCACCCATTGCTTTGTTTGTCGAAGCTTACCCAGCTaGCTGAAGGCGTTCTTGCCC +
Preference number: 4 (lower is better)
Translates to: SDSDVVRDYRQFTHCFVCRSLPS*LKAFLP
Trigger: GGGCAAGAACGCCTTCAGCCAGCTGGGTAAGCTTCG...ACAAACAAAGCAATGGGTGAATTGTCTGTAATCTCTGACCACATCACTGTCGCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS-3UTR GCA 90 bp TTCACAGTGACAGTTGAATGCACATGTTCTTCTGGGTTTAGTAGAAACACATATTCCAGCCGTCTGAGCTaGCCCAGACGGTGGAAGTCG +
Preference number: 4 (lower is better)
Translates to: FTVTVECTCSSGFSRNTYSSRLS*PRRWKS
Trigger: CGACTTCCACCGTCTGGGGCAGCTCAGACGGCTGGA...ATATGTGTTTCTACTAAACCCAGAAGAACATGTGCATTCAACTGTCACTGTGAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
3UTR CAA 72 bp GTCCAGGCATTAAAGGGTTTTGGTGACAGTCTACAGTaGGGCAAGGCAGATGGTAAACAGAATCAGTGGTCT +
Preference number: 4 (lower is better)
Translates to: VQALKGFGDSLQ*GKADGKQNQWS
Trigger: AGACCACTGATTCTGTTTACCATCTGCCTTGCCCAACTGTAGACTGTCACCAAAACCCTTTAATGCCTGGAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS-3UTR CCA 90 bp TGTCAAGGTTTCCCACTTTTACGCCATTATTCATTTGTCCCCACTCTTGGGTTATGGAGAGAACGGATCTaGTTGTACTGCAGATCCAGC +
Preference number: 4 (lower is better)
Translates to: CQGFPLLRHYSFVPTLGLWRERI*LYCRSS
Trigger: GCTGGATCTGCAGTACAACCAGATCCGTTCTCTCCA...TAACCCAAGAGTGGGGACAAATGAATAATGGCGTAAAAGTGGGAAACCTTGACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
3UTR CAA 72 bp GGTCAGAGATTACAGACAATTCACCCATTGCTTTGTTaGTTTGGGACAAACTCAGAGCCCCACAAGCAAGCT +
Preference number: 4 (lower is better)
Translates to: GQRLQTIHPLLC*FGTNSEPHKQA
Trigger: AGCTTGCTTGTGGGGCTCTGAGTTTGTCCCAAACAAACAAAGCAATGGGTGAATTGTCTGTAATCTCTGACC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS-3UTR CCA 90 bp TTCACAGTGACAGTTGAATGCACATGTTCTTCTGGGTTTAGTAGAAACACATATTGGAACTTGGGCTGCTaGCCAAAGCGGTCGAAAAGC +
Preference number: 4 (lower is better)
Translates to: FTVTVECTCSSGFSRNTYWNLGC*PKRSKS
Trigger: GCTTTTCGACCGCTTTGGCCAGCAGCCCAAGTTCCA...ATATGTGTTTCTACTAAACCCAGAAGAACATGTGCATTCAACTGTCACTGTGAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS-3UTR GCA 90 bp GATGGTAAACAGAATCAGTGGTCTTTTCCATACTTTCAACGGGTCTCAGTTTTAGAGCAGAAAGCTCATTaGCACTCAGGTCTAGTGCCT +
Preference number: 4 (lower is better)
Translates to: DGKQNQWSFPYFQRVSVLEQKAH*HSGLVP
Trigger: AGGCACTAGACCTGAGTGGCAATGAGCTTTCTGCTC...TAAAACTGAGACCCGTTGAAAGTATGGAAAAGACCACTGATTCTGTTTACCATC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS GCA 90 bp GGTCGAAAAGCAGGCGGAAGCGTGCGCCGCCCTGCGGCCGGGGACTaGGGTGTTCGCGAACCGCCCAGCGCACCGAGGCGCTGTTGGCGC +
Preference number: 5 (lower is better)
Translates to: GRKAGGSVRRPAAGD*GVREPPSAPRRCWR
Trigger: GCGCCAACAGCGCCTCGGTGCGCTGGGCGGTTCGCGAACACCGCAGTCCCCGGCCGCAGGGCGGCGCACGCTTCCGCCTGCTTTTCGACC
74% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS GCA 90 bp TGCTGGCCAAAGCGGTCGAAAAGCAGGCGGAAGCGTGCGCCGCCCTaGGGCCGGGGACTGCGGTGTTCGCGAACCGCCCAGCGCACCGAG +
Preference number: 5 (lower is better)
Translates to: CWPKRSKSRRKRAPP*GRGLRCSRTAQRTE
Trigger: CTCGGTGCGCTGGGCGGTTCGCGAACACCGCAGTCCCCGGCCGCAGGGCGGCGCACGCTTCCGCCTGCTTTTCGACCGCTTTGGCCAGCA
72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS TCA 90 bp GCTGAGCGCGCACACGGTGGTGCGGGGACGGTGCGACTGGAAGCCTaGGAAGTCCGCGGACACACCAGTGCCCATGGAGCGCAGTGGCCG +
Preference number: 5 (lower is better)
Translates to: AERAHGGAGTVRLEA*EVRGHTSAHGAQWP
Trigger: CGGCCACTGCGCTCCATGGGCACTGGTGTGTCCGCGGACTTCTCAGGCTTCCAGTCGCACCGTCCCCGCACCACCGTGTGCGCGCTCAGC
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS GCA 90 bp GAACTTGGGCTGCTGGCCAAAGCGGTCGAAAAGCAGGCGGAAGCGTaGGCCGCCCTGCGGCCGGGGACTGCGGTGTTCGCGAACCGCCCA +
Preference number: 5 (lower is better)
Translates to: ELGLLAKAVEKQAEA*AALRPGTAVFANRP
Trigger: TGGGCGGTTCGCGAACACCGCAGTCCCCGGCCGCAGGGCGGCGCACGCTTCCGCCTGCTTTTCGACCGCTTTGGCCAGCAGCCCAAGTTC
70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS GCA 90 bp GGTAGGGGGTGTCTCCGCGCAGCTCGTGCAGCGTGGCCGAGTCGCTaGGCTCCGGCAGGTAGACGAAGCGCTGGAACTTGGGCTGCTGGC +
Preference number: 5 (lower is better)
Translates to: GRGCLRAARAAWPSR*APAGRRSAGTWAAG
Trigger: GCCAGCAGCCCAAGTTCCAGCGCTTCGTCTACCTGCCGGAGCGCAGCGACTCGGCCACGCTGCACGAGCTGCGCGGAGACACCCCCTACC
70% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS CCA 90 bp ACAGCGCGAAGTCCCCTGTTGGTGCATAGGAGATGTTGGGGGTGCTaGCAGTCGCAGCGCTCCGGGCACACGGACTCGGCCCGCGGCGGG +
Preference number: 5 (lower is better)
Translates to: TARSPLLVHRRCWGC*QSQRSGHTDSARGG
Trigger: CCCGCCGCGGGCCGAGTCCGTGTGCCCGGAGCGCTGCGACTGCCAGCACCCCCAACATCTCCTATGCACCAACAGGGGACTTCGCGCTGT
70% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS CCA 90 bp ACACCAGTGCCCATGGAGCGCAGTGGCCGTCGGGTGGAGTACATGTaGCGAACGTGGACCGGGGCCCCTCCCTTCCGCCTGGCACGCAGC +
Preference number: 5 (lower is better)
Translates to: TPVPMERSGRRVEYM*RTWTGAPPFRLARS
Trigger: GCTGCGTGCCAGGCGGAAGGGAGGGGCCCCGGTCCACGTTCGCCACATGTACTCCACCCGACGGCCACTGCGCTCCATGGGCACTGGTGT
70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS CCA 90 bp AGTCCGCGGACACACCAGTGCCCATGGAGCGCAGTGGCCGTCGGGTaGAGTACATGTGGCGAACGTGGACCGGGGCCCCTCCCTTCCGCC +
Preference number: 5 (lower is better)
Translates to: SPRTHQCPWSAVAVG*STCGERGPGPLPSA
Trigger: GGCGGAAGGGAGGGGCCCCGGTCCACGTTCGCCACATGTACTCCACCCGACGGCCACTGCGCTCCATGGGCACTGGTGTGTCCGCGGACT
70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS CCA 90 bp TCGGCCTCGCTGAGCGCGCACACGGTGGTGCGGGGACGGTGCGACTaGAAGCCTGAGAAGTCCGCGGACACACCAGTGCCCATGGAGCGC +
Preference number: 5 (lower is better)
Translates to: SASLSAHTVVRGRCD*KPEKSADTPVPMER
Trigger: GCGCTCCATGGGCACTGGTGTGTCCGCGGACTTCTCAGGCTTCCAGTCGCACCGTCCCCGCACCACCGTGTGCGCGCTCAGCGAGGCCGA
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS TCA 90 bp CCGCGTCCGGCAGCGCTCCCAGCACGTTCCCGTCCAGCCGTAGCTTaGCCAAACTCTCCAGGCCCTCGAAGGACCCGCGACTCAGGCGTC +
Preference number: 5 (lower is better)
Translates to: PRPAALPARSRPAVA*PNSPGPRRTRDSGV
Trigger: GACGCCTGAGTCGCGGGTCCTTCGAGGGCCTGGAGAGTTTGGTCAAGCTACGGCTGGACGGGAACGTGCTGGGAGCGCTGCCGGACGCGG
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS GCA 90 bp GGTACAGCGCGAAGTCCCCTGTTGGTGCATAGGAGATGTTGGGGGTaGTGGCAGTCGCAGCGCTCCGGGCACACGGACTCGGCCCGCGGC +
Preference number: 5 (lower is better)
Translates to: GTARSPLLVHRRCWG*WQSQRSGHTDSARG
Trigger: GCCGCGGGCCGAGTCCGTGTGCCCGGAGCGCTGCGACTGCCAGCACCCCCAACATCTCCTATGCACCAACAGGGGACTTCGCGCTGTACC
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS GCA 90 bp CCGCCTGGCACGCAGCTTCCTCCGCAGCCATCGCGATCCCCAGGCTaGCAGTGCCAGGAGCACCAGAAGCGCGTTGACAGCCAGCAAGAC +
Preference number: 5 (lower is better)
Translates to: PPGTQLPPQPSRSPG*QCQEHQKRVDSQQD
Trigger: GTCTTGCTGGCTGTCAACGCGCTTCTGGTGCTCCTGGCACTGGCAGCCTGGGGATCGCGATGGCTGCGGAGGAAGCTGCGTGCCAGGCGG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS GCA 90 bp ATGAGGTCGGCCTCGCTGAGCGCGCACACGGTGGTGCGGGGACGGTaGGACTGGAAGCCTGAGAAGTCCGCGGACACACCAGTGCCCATG +
Preference number: 5 (lower is better)
Translates to: MRSASLSAHTVVRGR*DWKPEKSADTPVPM
Trigger: CATGGGCACTGGTGTGTCCGCGGACTTCTCAGGCTTCCAGTCGCACCGTCCCCGCACCACCGTGTGCGCGCTCAGCGAGGCCGACCTCAT
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS CCA 90 bp CAGAGGCGGGCTCAGACGTCGGGGTGGGCTCCGTCTGGGAGAGATTaGCTCGGGTGTGACGTCCTCTCCCCGGCTTCTCGTGCAGGTCCA +
Preference number: 5 (lower is better)
Translates to: QRRAQTSGWAPSGRD*LGCDVLSPASRAGP
Trigger: TGGACCTGCACGAGAAGCCGGGGAGAGGACGTCACACCCGAGCCAATCTCTCCCAGACGGAGCCCACCCCGACGTCTGAGCCCGCCTCTG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS GCA 90 bp GCGCTCTCTTGCTGCTCGGACGCTAGGCGCTGCTTTGCTGCGCGCTaGCAGCTGTCTCTGGCAGATGGTGTCCCAGAGGCGGGCTCAGAC +
Preference number: 5 (lower is better)
Translates to: ALSCCSDARRCFAAR*QLSLADGVPEAGSD
Trigger: GTCTGAGCCCGCCTCTGGGACACCATCTGCCAGAGACAGCTGGCAGCGCGCAGCAAAGCAGCGCCTAGCGTCCGAGCAGCAAGAGAGCGC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS CCA 90 bp TGGCCGAGTCGCTGCGCTCCGGCAGGTAGACGAAGCGCTGGAACTTaGGCTGCTGGCCAAAGCGGTCGAAAAGCAGGCGGAAGCGTGCGC +
Preference number: 5 (lower is better)
Translates to: WPSRCAPAGRRSAGT*AAGQSGRKAGGSVR
Trigger: GCGCACGCTTCCGCCTGCTTTTCGACCGCTTTGGCCAGCAGCCCAAGTTCCAGCGCTTCGTCTACCTGCCGGAGCGCAGCGACTCGGCCA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS CCA 90 bp CCACGCATACTAGGTAGGGGGTGTCTCCGCGCAGCTCGTGCAGCGTaGCCGAGTCGCTGCGCTCCGGCAGGTAGACGAAGCGCTGGAACT +
Preference number: 5 (lower is better)
Translates to: PRILGRGCLRAARAA*PSRCAPAGRRSAGT
Trigger: AGTTCCAGCGCTTCGTCTACCTGCCGGAGCGCAGCGACTCGGCCACGCTGCACGAGCTGCGCGGAGACACCCCCTACCTAGTATGCGTGG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS GCA 90 bp AGCAGGCCTAGGCGTGGCAGGTGCTGGAAGACGCGGGGGCCGAGGTaGTGTAGGCTGTTGGCTGAGAGGATGAGAGTAGAGAGGGAGCGC +
Preference number: 5 (lower is better)
Translates to: SRPRRGRCWKTRGPR*CRLLAERMRVERER
Trigger: GCGCTCCCTCTCTACTCTCATCCTCTCAGCCAACAGCCTACAGCACCTCGGCCCCCGCGTCTTCCAGCACCTGCCACGCCTAGGCCTGCT
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS GCA 90 bp GTGAGCTGGTTTCCACTGAGGGAGAGCAGGCCTAGGCGTGGCAGGTaGTGGAAGACGCGGGGGCCGAGGTGCTGTAGGCTGTTGGCTGAG +
Preference number: 5 (lower is better)
Translates to: VSWFPLRESRPRRGR*WKTRGPRCCRLLAE
Trigger: CTCAGCCAACAGCCTACAGCACCTCGGCCCCCGCGTCTTCCAGCACCTGCCACGCCTAGGCCTGCTCTCCCTCAGTGGAAACCAGCTCAC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS GCA 90 bp GGCACGCAGCTTCCTCCGCAGCCATCGCGATCCCCAGGCTGCCAGTaGCAGGAGCACCAGAAGCGCGTTGACAGCCAGCAAGACCAAGGT +
Preference number: 5 (lower is better)
Translates to: GTQLPPQPSRSPGCQ*QEHQKRVDSQQDQG
Trigger: ACCTTGGTCTTGCTGGCTGTCAACGCGCTTCTGGTGCTCCTGGCACTGGCAGCCTGGGGATCGCGATGGCTGCGGAGGAAGCTGCGTGCC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS GCA 90 bp GGGGACGGTGCGACTGGAAGCCTGAGAAGTCCGCGGACACACCAGTaGCCATGGAGCGCAGTGGCCGTCGGGTGGAGTACATGTGGCGAA +
Preference number: 5 (lower is better)
Translates to: GDGATGSLRSPRTHQ*PWSAVAVGWSTCGE
Trigger: TTCGCCACATGTACTCCACCCGACGGCCACTGCGCTCCATGGGCACTGGTGTGTCCGCGGACTTCTCAGGCTTCCAGTCGCACCGTCCCC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS CCA 90 bp GTCTTGGGTACAGCGCGAAGTCCCCTGTTGGTGCATAGGAGATGTTaGGGGTGCTGGCAGTCGCAGCGCTCCGGGCACACGGACTCGGCC +
Preference number: 5 (lower is better)
Translates to: VLGTARSPLLVHRRC*GCWQSQRSGHTDSA
Trigger: GGCCGAGTCCGTGTGCCCGGAGCGCTGCGACTGCCAGCACCCCCAACATCTCCTATGCACCAACAGGGGACTTCGCGCTGTACCCAAGAC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS CCA 90 bp AGCTGGTTTCCACTGAGGGAGAGCAGGCCTAGGCGTGGCAGGTGCTaGAAGACGCGGGGGCCGAGGTGCTGTAGGCTGTTGGCTGAGAGG +
Preference number: 5 (lower is better)
Translates to: SWFPLRESRPRRGRC*KTRGPRCCRLLAER
Trigger: CCTCTCAGCCAACAGCCTACAGCACCTCGGCCCCCGCGTCTTCCAGCACCTGCCACGCCTAGGCCTGCTCTCCCTCAGTGGAAACCAGCT
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS CCA 90 bp GGCCCTCGAAGGACCCGCGACTCAGGCGTCCAATCTCGTTGCCGTTaGCGTAAAGGATGCGCAACTTGCGCAGCGGAGCCAACGTGCCAG +
Preference number: 5 (lower is better)
Translates to: GPRRTRDSGVQSRCR*RKGCATCAAEPTCQ
Trigger: CTGGCACGTTGGCTCCGCTGCGCAAGTTGCGCATCCTTTACGCCAACGGCAACGAGATTGGACGCCTGAGTCGCGGGTCCTTCGAGGGCC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS CCA 90 bp GGTGCGACTGGAAGCCTGAGAAGTCCGCGGACACACCAGTGCCCATaGAGCGCAGTGGCCGTCGGGTGGAGTACATGTGGCGAACGTGGA +
Preference number: 5 (lower is better)
Translates to: GATGSLRSPRTHQCP*SAVAVGWSTCGERG
Trigger: TCCACGTTCGCCACATGTACTCCACCCGACGGCCACTGCGCTCCATGGGCACTGGTGTGTCCGCGGACTTCTCAGGCTTCCAGTCGCACC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS TCA 90 bp ATCGCGATCCCCAGGCTGCCAGTGCCAGGAGCACCAGAAGCGCGTTaGCAGCCAGCAAGACCAAGGTCAGGAGCTGGTAGTCGACGCCAC +
Preference number: 5 (lower is better)
Translates to: IAIPRLPVPGAPEAR*QPARPRSGAGSRRH
Trigger: GTGGCGTCGACTACCAGCTCCTGACCTTGGTCTTGCTGGCTGTCAACGCGCTTCTGGTGCTCCTGGCACTGGCAGCCTGGGGATCGCGAT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS GCA 90 bp ACCCGCGACTCAGGCGTCCAATCTCGTTGCCGTTGGCGTAAAGGATaGGCAACTTGCGCAGCGGAGCCAACGTGCCAGGAACGAGCGCCT +
Preference number: 5 (lower is better)
Translates to: TRDSGVQSRCRWRKG*ATCAAEPTCQERAP
Trigger: AGGCGCTCGTTCCTGGCACGTTGGCTCCGCTGCGCAAGTTGCGCATCCTTTACGCCAACGGCAACGAGATTGGACGCCTGAGTCGCGGGT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS GCA 90 bp TCTCCAGGCCCTCGAAGGACCCGCGACTCAGGCGTCCAATCTCGTTaGCGTTGGCGTAAAGGATGCGCAACTTGCGCAGCGGAGCCAACG +
Preference number: 5 (lower is better)
Translates to: SPGPRRTRDSGVQSR*RWRKGCATCAAEPT
Trigger: CGTTGGCTCCGCTGCGCAAGTTGCGCATCCTTTACGCCAACGGCAACGAGATTGGACGCCTGAGTCGCGGGTCCTTCGAGGGCCTGGAGA
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS GCA 90 bp AGAGGTGGCAAACCAACCCCACTAACGGACTGGACTGCGCTCTCTTaGTGCTCGGACGCTAGGCGCTGCTTTGCTGCGCGCTGCCAGCTG +
Preference number: 5 (lower is better)
Translates to: RGGKPTPLTDWTALS*CSDARRCFAARCQL
Trigger: CAGCTGGCAGCGCGCAGCAAAGCAGCGCCTAGCGTCCGAGCAGCAAGAGAGCGCAGTCCAGTCCGTTAGTGGGGTTGGTTTGCCACCTCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS GCA 90 bp AGGGAGCGCAGAGGGACAAAGGTGGCCGCGTGGCGCAGAGAGGGTTaGAGCTCGTTGGCCGAGAGATTGAGGAATCGAAGCTTACCCAGC +
Preference number: 5 (lower is better)
Translates to: RERRGTKVAAWRREG*SSLAERLRNRSLPS
Trigger: GCTGGGTAAGCTTCGATTCCTCAATCTCTCGGCCAACGAGCTGCAACCCTCTCTGCGCCACGCGGCCACCTTTGTCCCTCTGCGCTCCCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS GCA 90 bp TCCAGCGTTTCAGACCCCGCAACCGGCAGTCGCAGGTCCAACCATTaGCGTCTAGATCCAGCCGGTAGAGAGCCGGACTGGCGGCAAAGA +
Preference number: 5 (lower is better)
Translates to: SSVSDPATGSRRSNH*RLDPAGREPDWRQR
Trigger: TCTTTGCCGCCAGTCCGGCTCTCTACCGGCTGGATCTAGACGGCAATGGTTGGACCTGCGACTGCCGGTTGCGGGGTCTGAAACGCTGGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS GCA 90 bp ATGCGCAACTTGCGCAGCGGAGCCAACGTGCCAGGAACGAGCGCCTaGAAGAGGTTGTTCCCCAGGTACAGCTCCTCTAGTCGTGAGAGC +
Preference number: 5 (lower is better)
Translates to: MRNLRSGANVPGTSA*KRLFPRYSSSSRES
Trigger: GCTCTCACGACTAGAGGAGCTGTACCTGGGGAACAACCTCTTGCAGGCGCTCGTTCCTGGCACGTTGGCTCCGCTGCGCAAGTTGCGCAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS GCA 90 bp TGCCGTTGGCGTAAAGGATGCGCAACTTGCGCAGCGGAGCCAACGTaGCAGGAACGAGCGCCTGCAAGAGGTTGTTCCCCAGGTACAGCT +
Preference number: 5 (lower is better)
Translates to: CRWRKGCATCAAEPT*QERAPARGCSPGTA
Trigger: AGCTGTACCTGGGGAACAACCTCTTGCAGGCGCTCGTTCCTGGCACGTTGGCTCCGCTGCGCAAGTTGCGCATCCTTTACGCCAACGGCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS GCA 90 bp TCAGGCGTCCAATCTCGTTGCCGTTGGCGTAAAGGATGCGCAACTTaGGCAGCGGAGCCAACGTGCCAGGAACGAGCGCCTGCAAGAGGT +
Preference number: 5 (lower is better)
Translates to: SGVQSRCRWRKGCAT*AAEPTCQERAPARG
Trigger: ACCTCTTGCAGGCGCTCGTTCCTGGCACGTTGGCTCCGCTGCGCAAGTTGCGCATCCTTTACGCCAACGGCAACGAGATTGGACGCCTGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS CCA 90 bp AGGATGAGAGTAGAGAGGGAGCGCAGAGGGACAAAGGTGGCCGCGTaGCGCAGAGAGGGTTGCAGCTCGTTGGCCGAGAGATTGAGGAAT +
Preference number: 5 (lower is better)
Translates to: RMRVERERRGTKVAA*RREGCSSLAERLRN
Trigger: ATTCCTCAATCTCTCGGCCAACGAGCTGCAACCCTCTCTGCGCCACGCGGCCACCTTTGTCCCTCTGCGCTCCCTCTCTACTCTCATCCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS CCA 90 bp AGTCGTGAGAGCTTCTCGAAGGTCTTGGGGTGGAGAGAACGGATCTaGTTGTACTGCAGATCCAGCCGTCTGAGCTGCCCCAGACGGTGG +
Preference number: 5 (lower is better)
Translates to: SRESFSKVLGWRERI*LYCRSSRLSCPRRW
Trigger: CCACCGTCTGGGGCAGCTCAGACGGCTGGATCTGCAGTACAACCAGATCCGTTCTCTCCACCCCAAGACCTTCGAGAAGCTCTCACGACT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS-3UTR CAA 90 bp GTGCTGTGCATGAAAAATTGCGAGTTCTACAGGAGGTGCCAGATAGCCTGTGGGAGGGCGCTGAGCGCGTaGTCGCGCAGGCTGAGCTCA +
Preference number: 5 (lower is better)
Translates to: VLCMKNCEFYRRCQIACGRALSA*SRRLSS
Trigger: TGAGCTCAGCCTGCGCGACAACGCGCTCAGCGCCCT...CCCACAGGCTATCTGGCACCTCCTGTAGAACTCGCAATTTTTCATGCACAGCAC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS GCA 90 bp AGCTTCTCGAAGGTCTTGGGGTGGAGAGAACGGATCTGGTTGTACTaGAGATCCAGCCGTCTGAGCTGCCCCAGACGGTGGAAGTCGAAG +
Preference number: 5 (lower is better)
Translates to: SFSKVLGWRERIWLY*RSSRLSCPRRWKSK
Trigger: CTTCGACTTCCACCGTCTGGGGCAGCTCAGACGGCTGGATCTGCAGTACAACCAGATCCGTTCTCTCCACCCCAAGACCTTCGAGAAGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS GCA 90 bp AGAGCAGAAAGCTCATTGCCACTCAGGTCTAGTGCCTCCAAGCTGTaGAGAGGCTCCAGCAGTGTCAGGGGGAGCTGGTTCAGCCGGTTA +
Preference number: 5 (lower is better)
Translates to: RAESSLPLRSSASKL*RGSSSVRGSWFSRL
Trigger: TAACCGGCTGAACCAGCTCCCCCTGACACTGCTGGAGCCTCTGCACAGCTTGGAGGCACTAGACCTGAGTGGCAATGAGCTTTCTGCTCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS-3UTR CAA 90 bp GGAAGGCTGCAGTGCCCTAGGGAGTCACTGGTTACACACACACACACACACACAAGCGCCTGCAAGAGGTaGTTCCCCAGGTACAGCTCC +
Preference number: 5 (lower is better)
Translates to: GRLQCPRESLVTHTHTHTSACKR*FPRYSS
Trigger: GGAGCTGTACCTGGGGAACAACCTCTTGCAGGCGCT...TGTGTGTGTGTGTGTGTGTGTAACCAGTGACTCCCTAGGGCACTGCAGCCTTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS GCA 90 bp TGGAGAGAACGGATCTGGTTGTACTGCAGATCCAGCCGTCTGAGCTaGCCCAGACGGTGGAAGTCGAAGGCGGTGATGTTGGTGATGAAG +
Preference number: 5 (lower is better)
Translates to: WRERIWLYCRSSRLS*PRRWKSKAVMLVMK
Trigger: CTTCATCACCAACATCACCGCCTTCGACTTCCACCGTCTGGGGCAGCTCAGACGGCTGGATCTGCAGTACAACCAGATCCGTTCTCTCCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS CCA 90 bp TCCCCAGGTACAGCTCCTCTAGTCGTGAGAGCTTCTCGAAGGTCTTaGGGTGGAGAGAACGGATCTGGTTGTACTGCAGATCCAGCCGTC +
Preference number: 5 (lower is better)
Translates to: SPGTAPLVVRASRRS*GGENGSGCTADPAV
Trigger: GACGGCTGGATCTGCAGTACAACCAGATCCGTTCTCTCCACCCCAAGACCTTCGAGAAGCTCTCACGACTAGAGGAGCTGTACCTGGGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS CCA 90 bp AGGTACAGCTCCTCTAGTCGTGAGAGCTTCTCGAAGGTCTTGGGGTaGAGAGAACGGATCTGGTTGTACTGCAGATCCAGCCGTCTGAGC +
Preference number: 5 (lower is better)
Translates to: RYSSSSRESFSKVLG*RERIWLYCRSSRLS
Trigger: GCTCAGACGGCTGGATCTGCAGTACAACCAGATCCGTTCTCTCCACCCCAAGACCTTCGAGAAGCTCTCACGACTAGAGGAGCTGTACCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS-3UTR CAA 90 bp CTAAGAGAGGCAACTGTGCTGTGCATGAAAAATTGCGAGTTCTACAGGAGGTGCGTGGCGCAGAGAGGGTaGCAGCTCGTTGGCCGAGAG +
Preference number: 5 (lower is better)
Translates to: LREATVLCMKNCEFYRRCVAQRG*QLVGRE
Trigger: CTCTCGGCCAACGAGCTGCAACCCTCTCTGCGCCAC...GCACCTCCTGTAGAACTCGCAATTTTTCATGCACAGCACAGTTGCCTCTCTTAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS-3UTR CAA 90 bp AGTGGTACCTGTTTGTTTACCCTGCCGGTCTTGGCAGAACCCACCAGATCAGTGAGCACCAGAAGCGCGTaGACAGCCAGCAAGACCAAG +
Preference number: 5 (lower is better)
Translates to: SGTCLFTLPVLAEPTRSVSTRSA*TASKTK
Trigger: CTTGGTCTTGCTGGCTGTCAACGCGCTTCTGGTGCT...CACTGATCTGGTGGGTTCTGCCAAGACCGGCAGGGTAAACAAACAGGTACCACT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS-3UTR CAA 90 bp TGGGCAAGGCAGATGGTAAACAGAATCAGTGGTCTTTTCCATACTTTCAACGGGGGCAGCGAGCTGGTCTaGGGTACAGCGCGAAGTCCC +
Preference number: 5 (lower is better)
Translates to: WARQMVNRISGLFHTFNGGSELV*GTARSP
Trigger: GGGACTTCGCGCTGTACCCAAGACCAGCTCGCTGCC...CCCGTTGAAAGTATGGAAAAGACCACTGATTCTGTTTACCATCTGCCTTGCCCA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS-3UTR CAA 90 bp AACTCAGAAATGGGTGCTGTCAAGAAGGGGATGGGGGACACTGCTGAACTGTCGAGCTTCTCGAAGGTCTaGGGGTGGAGAGAACGGATC +
Preference number: 5 (lower is better)
Translates to: NSEMGAVKKGMGDTAELSSFSKV*GWRERI
Trigger: GATCCGTTCTCTCCACCCCAAGACCTTCGAGAAGCT...CGACAGTTCAGCAGTGTCCCCCATCCCCTTCTTGACAGCACCCATTTCTGAGTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS-3UTR CAA 90 bp GTGTCAAGGTTTCCCACTTTTACGCCATTATTCATTTGTCCCCACTCTTGGGTTTTGCCCACCAGTTCCTaGGCAGCCCCACCCCAGGCC +
Preference number: 5 (lower is better)
Translates to: VSRFPTFTPLFICPHSWVLPTSS*AAPPQA
Trigger: GGCCTGGGGTGGGGCTGCCAAGGAACTGGTGGGCAA...AACCCAAGAGTGGGGACAAATGAATAATGGCGTAAAAGTGGGAAACCTTGACAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 20 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS-3UTR CAA 90 bp GTGTCAAGGTTTCCCACTTTTACGCCATTATTCATTTGTCCCCACTCTTGGGTTCGCACCGAGGCGCTGTaGGCGCTCACCGCCTCTACT +
Preference number: 5 (lower is better)
Translates to: VSRFPTFTPLFICPHSWVRTEAL*ALTAST
Trigger: AGTAGAGGCGGTGAGCGCCAACAGCGCCTCGGTGCG...AACCCAAGAGTGGGGACAAATGAATAATGGCGTAAAAGTGGGAAACCTTGACAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS CCA 90 bp GCACAGAATGAATTTGTTGAAGTCACAGGGGTCAGACACCAGAGGTaGCAAACCAACCCCACTAACGGACTGGACTGCGCTCTCTTGCTG +
Preference number: 5 (lower is better)
Translates to: AQNEFVEVTGVRHQR*QTNPTNGLDCALLL
Trigger: CAGCAAGAGAGCGCAGTCCAGTCCGTTAGTGGGGTTGGTTTGCCACCTCTGGTGTCTGACCCCTGTGACTTCAACAAATTCATTCTGTGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS-3UTR CAA 90 bp CCCACTTTTACGCCATTATTCATTTGTCCCCACTCTTGGGTTAGACCACCAAGAACGAAGCGCTGGAACTaGGGCTGCTGGCCAAAGCGG +
Preference number: 5 (lower is better)
Translates to: PTFTPLFICPHSWVRPPRTKRWN*GCWPKR
Trigger: CCGCTTTGGCCAGCAGCCCAAGTTCCAGCGCTTCGT...TCTTGGTGGTCTAACCCAAGAGTGGGGACAAATGAATAATGGCGTAAAAGTGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS-3UTR CAA 90 bp TCACCCATTGCTTTGTTTGTTTGGGACAAACTCAGAGCCCCACAAGCAAGCTCCCCCATTCTGCAGCAGTaGGTCATCCAGGTAATCCAG +
Preference number: 5 (lower is better)
Translates to: SPIALFVWDKLRAPQASSPILQQ*VIQVIQ
Trigger: CTGGATTACCTGGATGACCAACTGCTGCAGAATGGG...GGAGCTTGCTTGTGGGGCTCTGAGTTTGTCCCAAACAAACAAAGCAATGGGTGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS-3UTR CAA 90 bp GGAAGGCTGCAGTGCCCTAGGGAGTCACTGGTTACACACACACACACACACACACACAGAATGAATTTGTaGAAGTCACAGGGGTCAGAC +
Preference number: 5 (lower is better)
Translates to: GRLQCPRESLVTHTHTHTHRMNL*KSQGSD
Trigger: GTCTGACCCCTGTGACTTCAACAAATTCATTCTGTG...TGTGTGTGTGTGTGTGTGTGTAACCAGTGACTCCCTAGGGCACTGCAGCCTTCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS-3UTR CAA 90 bp GGAAGGCTGCAGTGCCCTAGGGAGTCACTGGTTACACACACACACACACACACATTGCACAGAATGAATTaGTTGAAGTCACAGGGGTCA +
Preference number: 5 (lower is better)
Translates to: GRLQCPRESLVTHTHTHTLHRMN*LKSQGS
Trigger: TGACCCCTGTGACTTCAACAAATTCATTCTGTGCAA...TGTGTGTGTGTGTGTGTGTGTAACCAGTGACTCCCTAGGGCACTGCAGCCTTCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS-3UTR CAA 90 bp GATGGTAAACAGAATCAGTGGTCTTTTCCATACTTTCAACGGGTCTCAGTTTTACCGTCCAGCCGTAGCTaGACCAAACTCTCCAGGCCC +
Preference number: 5 (lower is better)
Translates to: DGKQNQWSFPYFQRVSVLPSSRS*TKLSRP
Trigger: GGGCCTGGAGAGTTTGGTCAAGCTACGGCTGGACGG...TAAAACTGAGACCCGTTGAAAGTATGGAAAAGACCACTGATTCTGTTTACCATC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS-3UTR CAA 90 bp GATGGTAAACAGAATCAGTGGTCTTTTCCATACTTTCAACGGGTCTCAGTTTTATCGCAGGTCCAACCATaGCCGTCTAGATCCAGCCGG +
Preference number: 5 (lower is better)
Translates to: DGKQNQWSFPYFQRVSVLSQVQP*PSRSSR
Trigger: CCGGCTGGATCTAGACGGCAATGGTTGGACCTGCGA...TAAAACTGAGACCCGTTGAAAGTATGGAAAAGACCACTGATTCTGTTTACCATC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS-3UTR CAA 90 bp TCACCCATTGCTTTGTTTGTTTGGGACAAACTCAGAGCCCCACAAGCAAGCTCCGCCTCTACTGTCAGGTaGCACAGAATGAATTTGTTG +
Preference number: 5 (lower is better)
Translates to: SPIALFVWDKLRAPQASSASTVR*HRMNLL
Trigger: CAACAAATTCATTCTGTGCAACCTGACAGTAGAGGC...GGAGCTTGCTTGTGGGGCTCTGAGTTTGTCCCAAACAAACAAAGCAATGGGTGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS-3UTR CAA 90 bp AGCGACAGTGATGTGGTCAGAGATTACAGACAATTCACCCATTGCTTTGTTTGTAGGTGCTGTAGGCTGTaGGCTGAGAGGATGAGAGTA +
Preference number: 5 (lower is better)
Translates to: SDSDVVRDYRQFTHCFVCRCCRL*AERMRV
Trigger: TACTCTCATCCTCTCAGCCAACAGCCTACAGCACCT...ACAAACAAAGCAATGGGTGAATTGTCTGTAATCTCTGACCACATCACTGTCGCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS-3UTR CAA 90 bp AGCGACAGTGATGTGGTCAGAGATTACAGACAATTCACCCATTGCTTTGTTTGTAGAGCAGAAAGCTCATaGCCACTCAGGTCTAGTGCC +
Preference number: 5 (lower is better)
Translates to: SDSDVVRDYRQFTHCFVCRAESS*PLRSSA
Trigger: GGCACTAGACCTGAGTGGCAATGAGCTTTCTGCTCT...ACAAACAAAGCAATGGGTGAATTGTCTGTAATCTCTGACCACATCACTGTCGCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS GCA 72 bp GCAGGCGGAAGCGTGCGCCGCCCTGCGGCCGGGGACTaGGGTGTTCGCGAACCGCCCAGCGCACCGAGGCGC +
Preference number: 6 (lower is better)
Translates to: AGGSVRRPAAGD*GVREPPSAPRR
Trigger: GCGCCTCGGTGCGCTGGGCGGTTCGCGAACACCGCAGTCCCCGGCCGCAGGGCGGCGCACGCTTCCGCCTGC
79% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS GCA 72 bp CTGCTGGCCAAAGCGGTCGAAAAGCAGGCGGAAGCGTaGGCCGCCCTGCGGCCGGGGACTGCGGTGTTCGCG +
Preference number: 6 (lower is better)
Translates to: LLAKAVEKQAEA*AALRPGTAVFA
Trigger: CGCGAACACCGCAGTCCCCGGCCGCAGGGCGGCGCACGCTTCCGCCTGCTTTTCGACCGCTTTGGCCAGCAG
72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS CCA 72 bp TGTGGCGAACGTGGACCGGGGCCCCTCCCTTCCGCCTaGCACGCAGCTTCCTCCGCAGCCATCGCGATCCCC +
Preference number: 6 (lower is better)
Translates to: CGERGPGPLPSA*HAASSAAIAIP
Trigger: GGGGATCGCGATGGCTGCGGAGGAAGCTGCGTGCCAGGCGGAAGGGAGGGGCCCCGGTCCACGTTCGCCACA
72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS CCA 72 bp CGCAGTGGCCGTCGGGTGGAGTACATGTGGCGAACGTaGACCGGGGCCCCTCCCTTCCGCCTGGCACGCAGC +
Preference number: 6 (lower is better)
Translates to: RSGRRVEYMWRT*TGAPPFRLARS
Trigger: GCTGCGTGCCAGGCGGAAGGGAGGGGCCCCGGTCCACGTTCGCCACATGTACTCCACCCGACGGCCACTGCG
72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS CCA 72 bp TCCTCTCCCCGGCTTCTCGTGCAGGTCCAAGGACTGTaGGGCAGAGCCCGGAGCCGCAGCAGAGGGGCCCTG +
Preference number: 6 (lower is better)
Translates to: SSPRLLVQVQGL*GRARSRSRGAL
Trigger: CAGGGCCCCTCTGCTGCGGCTCCGGGCTCTGCCCCACAGTCCTTGGACCTGCACGAGAAGCCGGGGAGAGGA
71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS CCA 72 bp CCCATGGAGCGCAGTGGCCGTCGGGTGGAGTACATGTaGCGAACGTGGACCGGGGCCCCTCCCTTCCGCCTG +
Preference number: 6 (lower is better)
Translates to: PMERSGRRVEYM*RTWTGAPPFRL
Trigger: CAGGCGGAAGGGAGGGGCCCCGGTCCACGTTCGCCACATGTACTCCACCCGACGGCCACTGCGCTCCATGGG
71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS CAA 90 bp GCCGGACTGGCGGCAAAGATGTCCCCAGAAAGGGCGCTGAGCGCGTaGTCGCGCAGGCTGAGCTCACGGAGCCGGCCCTGGTGGCCAAAG +
Preference number: 6 (lower is better)
Translates to: AGLAAKMSPERALSA*SRRLSSRSRPWWPK
Trigger: CTTTGGCCACCAGGGCCGGCTCCGTGAGCTCAGCCTGCGCGACAACGCGCTCAGCGCCCTTTCTGGGGACATCTTTGCCGCCAGTCCGGC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS CCA 72 bp CTAGGTAGGGGGTGTCTCCGCGCAGCTCGTGCAGCGTaGCCGAGTCGCTGCGCTCCGGCAGGTAGACGAAGC +
Preference number: 6 (lower is better)
Translates to: LGRGCLRAARAA*PSRCAPAGRRS
Trigger: GCTTCGTCTACCTGCCGGAGCGCAGCGACTCGGCCACGCTGCACGAGCTGCGCGGAGACACCCCCTACCTAG
69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS CAA 72 bp GCGGCAAAGATGTCCCCAGAAAGGGCGCTGAGCGCGTaGTCGCGCAGGCTGAGCTCACGGAGCCGGCCCTGG +
Preference number: 6 (lower is better)
Translates to: AAKMSPERALSA*SRRLSSRSRPW
Trigger: CCAGGGCCGGCTCCGTGAGCTCAGCCTGCGCGACAACGCGCTCAGCGCCCTTTCTGGGGACATCTTTGCCGC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS CAA 90 bp ACCGCGTCCGGCAGCGCTCCCAGCACGTTCCCGTCCAGCCGTAGCTaGACCAAACTCTCCAGGCCCTCGAAGGACCCGCGACTCAGGCGT +
Preference number: 6 (lower is better)
Translates to: TASGSAPSTFPSSRS*TKLSRPSKDPRLRR
Trigger: ACGCCTGAGTCGCGGGTCCTTCGAGGGCCTGGAGAGTTTGGTCAAGCTACGGCTGGACGGGAACGTGCTGGGAGCGCTGCCGGACGCGGT
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS TCA 72 bp GCACACGGTGGTGCGGGGACGGTGCGACTGGAAGCCTaGGAAGTCCGCGGACACACCAGTGCCCATGGAGCG +
Preference number: 6 (lower is better)
Translates to: AHGGAGTVRLEA*EVRGHTSAHGA
Trigger: CGCTCCATGGGCACTGGTGTGTCCGCGGACTTCTCAGGCTTCCAGTCGCACCGTCCCCGCACCACCGTGTGC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS GCA 72 bp TGTCTCCGCGCAGCTCGTGCAGCGTGGCCGAGTCGCTaGGCTCCGGCAGGTAGACGAAGCGCTGGAACTTGG +
Preference number: 6 (lower is better)
Translates to: CLRAARAAWPSR*APAGRRSAGTW
Trigger: CCAAGTTCCAGCGCTTCGTCTACCTGCCGGAGCGCAGCGACTCGGCCACGCTGCACGAGCTGCGCGGAGACA
68% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS CCA 72 bp CCACTGAGGGAGAGCAGGCCTAGGCGTGGCAGGTGCTaGAAGACGCGGGGGCCGAGGTGCTGTAGGCTGTTG +
Preference number: 6 (lower is better)
Translates to: PLRESRPRRGRC*KTRGPRCCRLL
Trigger: CAACAGCCTACAGCACCTCGGCCCCCGCGTCTTCCAGCACCTGCCACGCCTAGGCCTGCTCTCCCTCAGTGG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS CCA 72 bp CTGCTTTGCTGCGCGCTGCCAGCTGTCTCTGGCAGATaGTGTCCCAGAGGCGGGCTCAGACGTCGGGGTGGG +
Preference number: 6 (lower is better)
Translates to: LLCCALPAVSGR*CPRGGLRRRGG
Trigger: CCCACCCCGACGTCTGAGCCCGCCTCTGGGACACCATCTGCCAGAGACAGCTGGCAGCGCGCAGCAAAGCAG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS CCA 72 bp ACACACCAGTGCCCATGGAGCGCAGTGGCCGTCGGGTaGAGTACATGTGGCGAACGTGGACCGGGGCCCCTC +
Preference number: 6 (lower is better)
Translates to: THQCPWSAVAVG*STCGERGPGPL
Trigger: GAGGGGCCCCGGTCCACGTTCGCCACATGTACTCCACCCGACGGCCACTGCGCTCCATGGGCACTGGTGTGT
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS TCA 72 bp GCAGCGCTCCCAGCACGTTCCCGTCCAGCCGTAGCTTaGCCAAACTCTCCAGGCCCTCGAAGGACCCGCGAC +
Preference number: 6 (lower is better)
Translates to: AALPARSRPAVA*PNSPGPRRTRD
Trigger: GTCGCGGGTCCTTCGAGGGCCTGGAGAGTTTGGTCAAGCTACGGCTGGACGGGAACGTGCTGGGAGCGCTGC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS TCA 72 bp GGGGTGGGCTCCGTCTGGGAGAGATTGGCTCGGGTGTaGCGTCCTCTCCCCGGCTTCTCGTGCAGGTCCAAG +
Preference number: 6 (lower is better)
Translates to: GVGSVWERLARV*RPLPGFSCRSK
Trigger: CTTGGACCTGCACGAGAAGCCGGGGAGAGGACGTCACACCCGAGCCAATCTCTCCCAGACGGAGCCCACCCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS GCA 72 bp TTTCCACTGAGGGAGAGCAGGCCTAGGCGTGGCAGGTaGTGGAAGACGCGGGGGCCGAGGTGCTGTAGGCTG +
Preference number: 6 (lower is better)
Translates to: FPLRESRPRRGR*WKTRGPRCCRL
Trigger: CAGCCTACAGCACCTCGGCCCCCGCGTCTTCCAGCACCTGCCACGCCTAGGCCTGCTCTCCCTCAGTGGAAA
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS GCA 72 bp TGCTGCTCGGACGCTAGGCGCTGCTTTGCTGCGCGCTaGCAGCTGTCTCTGGCAGATGGTGTCCCAGAGGCG +
Preference number: 6 (lower is better)
Translates to: CCSDARRCFAAR*QLSLADGVPEA
Trigger: CGCCTCTGGGACACCATCTGCCAGAGACAGCTGGCAGCGCGCAGCAAAGCAGCGCCTAGCGTCCGAGCAGCA
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS GCA 72 bp ACGCAGCTTCCTCCGCAGCCATCGCGATCCCCAGGCTaGCAGTGCCAGGAGCACCAGAAGCGCGTTGACAGC +
Preference number: 6 (lower is better)
Translates to: TQLPPQPSRSPG*QCQEHQKRVDS
Trigger: GCTGTCAACGCGCTTCTGGTGCTCCTGGCACTGGCAGCCTGGGGATCGCGATGGCTGCGGAGGAAGCTGCGT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS CCA 72 bp AGTCCCCTGTTGGTGCATAGGAGATGTTGGGGGTGCTaGCAGTCGCAGCGCTCCGGGCACACGGACTCGGCC +
Preference number: 6 (lower is better)
Translates to: SPLLVHRRCWGC*QSQRSGHTDSA
Trigger: GGCCGAGTCCGTGTGCCCGGAGCGCTGCGACTGCCAGCACCCCCAACATCTCCTATGCACCAACAGGGGACT
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS CAA 72 bp GGCAGCGCTCCCAGCACGTTCCCGTCCAGCCGTAGCTaGACCAAACTCTCCAGGCCCTCGAAGGACCCGCGA +
Preference number: 6 (lower is better)
Translates to: GSAPSTFPSSRS*TKLSRPSKDPR
Trigger: TCGCGGGTCCTTCGAGGGCCTGGAGAGTTTGGTCAAGCTACGGCTGGACGGGAACGTGCTGGGAGCGCTGCC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS CAA 72 bp CGGTGTTCGCGAACCGCCCAGCGCACCGAGGCGCTGTaGGCGCTCACCGCCTCTACTGTCAGGTTGCACAGA +
Preference number: 6 (lower is better)
Translates to: RCSRTAQRTEAL*ALTASTVRLHR
Trigger: TCTGTGCAACCTGACAGTAGAGGCGGTGAGCGCCAACAGCGCCTCGGTGCGCTGGGCGGTTCGCGAACACCG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS CAA 90 bp CGGACTGGACTGCGCTCTCTTGCTGCTCGGACGCTAGGCGCTGCTTaGCTGCGCGCTGCCAGCTGTCTCTGGCAGATGGTGTCCCAGAGG +
Preference number: 6 (lower is better)
Translates to: RTGLRSLAARTLGAA*LRAASCLWQMVSQR
Trigger: CCTCTGGGACACCATCTGCCAGAGACAGCTGGCAGCGCGCAGCAAAGCAGCGCCTAGCGTCCGAGCAGCAAGAGAGCGCAGTCCAGTCCG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS GCA 72 bp CGAAGTCCCCTGTTGGTGCATAGGAGATGTTGGGGGTaGTGGCAGTCGCAGCGCTCCGGGCACACGGACTCG +
Preference number: 6 (lower is better)
Translates to: RSPLLVHRRCWG*WQSQRSGHTDS
Trigger: CGAGTCCGTGTGCCCGGAGCGCTGCGACTGCCAGCACCCCCAACATCTCCTATGCACCAACAGGGGACTTCG
65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS GCA 72 bp CTTCCTCCGCAGCCATCGCGATCCCCAGGCTGCCAGTaGCAGGAGCACCAGAAGCGCGTTGACAGCCAGCAA +
Preference number: 6 (lower is better)
Translates to: LPPQPSRSPGCQ*QEHQKRVDSQQ
Trigger: TTGCTGGCTGTCAACGCGCTTCTGGTGCTCCTGGCACTGGCAGCCTGGGGATCGCGATGGCTGCGGAGGAAG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS GCA 72 bp GCGACTGGAAGCCTGAGAAGTCCGCGGACACACCAGTaGCCATGGAGCGCAGTGGCCGTCGGGTGGAGTACA +
Preference number: 6 (lower is better)
Translates to: ATGSLRSPRTHQ*PWSAVAVGWST
Trigger: TGTACTCCACCCGACGGCCACTGCGCTCCATGGGCACTGGTGTGTCCGCGGACTTCTCAGGCTTCCAGTCGC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS CCA 72 bp ACAGCGCGAAGTCCCCTGTTGGTGCATAGGAGATGTTaGGGGTGCTGGCAGTCGCAGCGCTCCGGGCACACG +
Preference number: 6 (lower is better)
Translates to: TARSPLLVHRRC*GCWQSQRSGHT
Trigger: CGTGTGCCCGGAGCGCTGCGACTGCCAGCACCCCCAACATCTCCTATGCACCAACAGGGGACTTCGCGCTGT
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS CCA 72 bp GGTGTTCGCGAACCGCCCAGCGCACCGAGGCGCTGTTaGCGCTCACCGCCTCTACTGTCAGGTTGCACAGAA +
Preference number: 6 (lower is better)
Translates to: GVREPPSAPRRC*RSPPLLSGCTE
Trigger: TTCTGTGCAACCTGACAGTAGAGGCGGTGAGCGCCAACAGCGCCTCGGTGCGCTGGGCGGTTCGCGAACACC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS CCA 72 bp CGCTGCGCTCCGGCAGGTAGACGAAGCGCTGGAACTTaGGCTGCTGGCCAAAGCGGTCGAAAAGCAGGCGGA +
Preference number: 6 (lower is better)
Translates to: RCAPAGRRSAGT*AAGQSGRKAGG
Trigger: TCCGCCTGCTTTTCGACCGCTTTGGCCAGCAGCCCAAGTTCCAGCGCTTCGTCTACCTGCCGGAGCGCAGCG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS CCA 72 bp GAAGTCCGCGGACACACCAGTGCCCATGGAGCGCAGTaGCCGTCGGGTGGAGTACATGTGGCGAACGTGGAC +
Preference number: 6 (lower is better)
Translates to: EVRGHTSAHGAQ*PSGGVHVANVD
Trigger: GTCCACGTTCGCCACATGTACTCCACCCGACGGCCACTGCGCTCCATGGGCACTGGTGTGTCCGCGGACTTC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS GCA 72 bp AGGCGTGGCAGGTGCTGGAAGACGCGGGGGCCGAGGTaGTGTAGGCTGTTGGCTGAGAGGATGAGAGTAGAG +
Preference number: 6 (lower is better)
Translates to: RRGRCWKTRGPR*CRLLAERMRVE
Trigger: CTCTACTCTCATCCTCTCAGCCAACAGCCTACAGCACCTCGGCCCCCGCGTCTTCCAGCACCTGCCACGCCT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS GCA 72 bp TCAGACCCCGCAACCGGCAGTCGCAGGTCCAACCATTaGCGTCTAGATCCAGCCGGTAGAGAGCCGGACTGG +
Preference number: 6 (lower is better)
Translates to: SDPATGSRRSNH*RLDPAGREPDW
Trigger: CCAGTCCGGCTCTCTACCGGCTGGATCTAGACGGCAATGGTTGGACCTGCGACTGCCGGTTGCGGGGTCTGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS CAA 90 bp GGACTAGGCAGCGAGCTGGTCTTGGGTACAGCGCGAAGTCCCCTGTaGGTGCATAGGAGATGTTGGGGGTGCTGGCAGTCGCAGCGCTCC +
Preference number: 6 (lower is better)
Translates to: GLGSELVLGTARSPL*VHRRCWGCWQSQRS
Trigger: GGAGCGCTGCGACTGCCAGCACCCCCAACATCTCCTATGCACCAACAGGGGACTTCGCGCTGTACCCAAGACCAGCTCGCTGCCTAGTCC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS CAA 90 bp CGGGGACTGCGGTGTTCGCGAACCGCCCAGCGCACCGAGGCGCTGTaGGCGCTCACCGCCTCTACTGTCAGGTTGCACAGAATGAATTTG +
Preference number: 6 (lower is better)
Translates to: RGLRCSRTAQRTEAL*ALTASTVRLHRMNL
Trigger: CAAATTCATTCTGTGCAACCTGACAGTAGAGGCGGTGAGCGCCAACAGCGCCTCGGTGCGCTGGGCGGTTCGCGAACACCGCAGTCCCCG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS CAA 90 bp GTGGCCGCGTGGCGCAGAGAGGGTTGCAGCTCGTTGGCCGAGAGATaGAGGAATCGAAGCTTACCCAGCTGGCTGAAGGCGTTCTTGCCC +
Preference number: 6 (lower is better)
Translates to: VAAWRREGCSSLAER*RNRSLPSWLKAFLP
Trigger: GGGCAAGAACGCCTTCAGCCAGCTGGGTAAGCTTCGATTCCTCAATCTCTCGGCCAACGAGCTGCAACCCTCTCTGCGCCACGCGGCCAC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS CAA 90 bp GAGGGAGCGCAGAGGGACAAAGGTGGCCGCGTGGCGCAGAGAGGGTaGCAGCTCGTTGGCCGAGAGATTGAGGAATCGAAGCTTACCCAG +
Preference number: 6 (lower is better)
Translates to: EGAQRDKGGRVAQRG*QLVGREIEESKLTQ
Trigger: CTGGGTAAGCTTCGATTCCTCAATCTCTCGGCCAACGAGCTGCAACCCTCTCTGCGCCACGCGGCCACCTTTGTCCCTCTGCGCTCCCTC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS TCA 72 bp CCCAGGCTGCCAGTGCCAGGAGCACCAGAAGCGCGTTaGCAGCCAGCAAGACCAAGGTCAGGAGCTGGTAGT +
Preference number: 6 (lower is better)
Translates to: PRLPVPGAPEAR*QPARPRSGAGS
Trigger: ACTACCAGCTCCTGACCTTGGTCTTGCTGGCTGTCAACGCGCTTCTGGTGCTCCTGGCACTGGCAGCCTGGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS GCA 72 bp CCTCGAAGGACCCGCGACTCAGGCGTCCAATCTCGTTaGCGTTGGCGTAAAGGATGCGCAACTTGCGCAGCG +
Preference number: 6 (lower is better)
Translates to: PRRTRDSGVQSR*RWRKGCATCAA
Trigger: CGCTGCGCAAGTTGCGCATCCTTTACGCCAACGGCAACGAGATTGGACGCCTGAGTCGCGGGTCCTTCGAGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS CCA 72 bp AGGACCCGCGACTCAGGCGTCCAATCTCGTTGCCGTTaGCGTAAAGGATGCGCAACTTGCGCAGCGGAGCCA +
Preference number: 6 (lower is better)
Translates to: RTRDSGVQSRCR*RKGCATCAAEP
Trigger: TGGCTCCGCTGCGCAAGTTGCGCATCCTTTACGCCAACGGCAACGAGATTGGACGCCTGAGTCGCGGGTCCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS CAA 72 bp GTGAGCACGTCCTGGGGACTAGGCAGCGAGCTGGTCTaGGGTACAGCGCGAAGTCCCCTGTTGGTGCATAGG +
Preference number: 6 (lower is better)
Translates to: VSTSWGLGSELV*GTARSPLLVHR
Trigger: CCTATGCACCAACAGGGGACTTCGCGCTGTACCCAAGACCAGCTCGCTGCCTAGTCCCCAGGACGTGCTCAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS GCA 72 bp AGCTGGTCTTGGGTACAGCGCGAAGTCCCCTGTTGGTaGATAGGAGATGTTGGGGGTGCTGGCAGTCGCAGC +
Preference number: 6 (lower is better)
Translates to: SWSWVQREVPCW*IGDVGGAGSRS
Trigger: GCTGCGACTGCCAGCACCCCCAACATCTCCTATGCACCAACAGGGGACTTCGCGCTGTACCCAAGACCAGCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS GCA 72 bp TTGCGCAGCGGAGCCAACGTGCCAGGAACGAGCGCCTaGAAGAGGTTGTTCCCCAGGTACAGCTCCTCTAGT +
Preference number: 6 (lower is better)
Translates to: LRSGANVPGTSA*KRLFPRYSSSS
Trigger: ACTAGAGGAGCTGTACCTGGGGAACAACCTCTTGCAGGCGCTCGTTCCTGGCACGTTGGCTCCGCTGCGCAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS GCA 72 bp CGTAAAGGATGCGCAACTTGCGCAGCGGAGCCAACGTaGCAGGAACGAGCGCCTGCAAGAGGTTGTTCCCCA +
Preference number: 6 (lower is better)
Translates to: RKGCATCAAEPT*QERAPARGCSP
Trigger: TGGGGAACAACCTCTTGCAGGCGCTCGTTCCTGGCACGTTGGCTCCGCTGCGCAAGTTGCGCATCCTTTACG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS GCA 72 bp CAATCTCGTTGCCGTTGGCGTAAAGGATGCGCAACTTaGGCAGCGGAGCCAACGTGCCAGGAACGAGCGCCT +
Preference number: 6 (lower is better)
Translates to: QSRCRWRKGCAT*AAEPTCQERAP
Trigger: AGGCGCTCGTTCCTGGCACGTTGGCTCCGCTGCGCAAGTTGCGCATCCTTTACGCCAACGGCAACGAGATTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS GCA 72 bp AGAGGGACAAAGGTGGCCGCGTGGCGCAGAGAGGGTTaGAGCTCGTTGGCCGAGAGATTGAGGAATCGAAGC +
Preference number: 6 (lower is better)
Translates to: RGTKVAAWRREG*SSLAERLRNRS
Trigger: GCTTCGATTCCTCAATCTCTCGGCCAACGAGCTGCAACCCTCTCTGCGCCACGCGGCCACCTTTGTCCCTCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS GCA 72 bp TCACGGAGCCGGCCCTGGTGGCCAAAGGTGGCAGGGTaGAGAGCAGAAAGCTCATTGCCACTCAGGTCTAGT +
Preference number: 6 (lower is better)
Translates to: SRSRPWWPKVAG*RAESSLPLRSS
Trigger: ACTAGACCTGAGTGGCAATGAGCTTTCTGCTCTGCACCCTGCCACCTTTGGCCACCAGGGCCGGCTCCGTGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS CAA 72 bp AGCGAGCTGGTCTTGGGTACAGCGCGAAGTCCCCTGTaGGTGCATAGGAGATGTTGGGGGTGCTGGCAGTCG +
Preference number: 6 (lower is better)
Translates to: SELVLGTARSPL*VHRRCWGCWQS
Trigger: CGACTGCCAGCACCCCCAACATCTCCTATGCACCAACAGGGGACTTCGCGCTGTACCCAAGACCAGCTCGCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS CAA 72 bp GGAGCCAACGTGCCAGGAACGAGCGCCTGCAAGAGGTaGTTCCCCAGGTACAGCTCCTCTAGTCGTGAGAGC +
Preference number: 6 (lower is better)
Translates to: GANVPGTSACKR*FPRYSSSSRES
Trigger: GCTCTCACGACTAGAGGAGCTGTACCTGGGGAACAACCTCTTGCAGGCGCTCGTTCCTGGCACGTTGGCTCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS CAA 72 bp AAGGTGGCCGCGTGGCGCAGAGAGGGTTGCAGCTCGTaGGCCGAGAGATTGAGGAATCGAAGCTTACCCAGC +
Preference number: 6 (lower is better)
Translates to: KVAAWRREGCSS*AERLRNRSLPS
Trigger: GCTGGGTAAGCTTCGATTCCTCAATCTCTCGGCCAACGAGCTGCAACCCTCTCTGCGCCACGCGGCCACCTT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS CAA 72 bp CAGAGGGACAAAGGTGGCCGCGTGGCGCAGAGAGGGTaGCAGCTCGTTGGCCGAGAGATTGAGGAATCGAAG +
Preference number: 6 (lower is better)
Translates to: QRDKGGRVAQRG*QLVGREIEESK
Trigger: CTTCGATTCCTCAATCTCTCGGCCAACGAGCTGCAACCCTCTCTGCGCCACGCGGCCACCTTTGTCCCTCTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS CAA 90 bp TTGCGCAGCGGAGCCAACGTGCCAGGAACGAGCGCCTGCAAGAGGTaGTTCCCCAGGTACAGCTCCTCTAGTCGTGAGAGCTTCTCGAAG +
Preference number: 6 (lower is better)
Translates to: LRSGANVPGTSACKR*FPRYSSSSRESFSK
Trigger: CTTCGAGAAGCTCTCACGACTAGAGGAGCTGTACCTGGGGAACAACCTCTTGCAGGCGCTCGTTCCTGGCACGTTGGCTCCGCTGCGCAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS CAA 90 bp AGAGGGACAAAGGTGGCCGCGTGGCGCAGAGAGGGTTGCAGCTCGTaGGCCGAGAGATTGAGGAATCGAAGCTTACCCAGCTGGCTGAAG +
Preference number: 6 (lower is better)
Translates to: RGTKVAAWRREGCSS*AERLRNRSLPSWLK
Trigger: CTTCAGCCAGCTGGGTAAGCTTCGATTCCTCAATCTCTCGGCCAACGAGCTGCAACCCTCTCTGCGCCACGCGGCCACCTTTGTCCCTCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS TCA 72 bp TGGCGACACTGCACGAAGACCGTAAGGAGGCGACCCTaGGAATGCCAGTTGCCCATCCAGCGTTTCAGACCC +
Preference number: 6 (lower is better)
Translates to: WRHCTKTVRRRP*ECQLPIQRFRP
Trigger: GGGTCTGAAACGCTGGATGGGCAACTGGCATTCTCAGGGTCGCCTCCTTACGGTCTTCGTGCAGTGTCGCCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS GCA 72 bp CGGATCTGGTTGTACTGCAGATCCAGCCGTCTGAGCTaGCCCAGACGGTGGAAGTCGAAGGCGGTGATGTTG +
Preference number: 6 (lower is better)
Translates to: RIWLYCRSSRLS*PRRWKSKAVML
Trigger: CAACATCACCGCCTTCGACTTCCACCGTCTGGGGCAGCTCAGACGGCTGGATCTGCAGTACAACCAGATCCG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS GCA 72 bp AAGGTCTTGGGGTGGAGAGAACGGATCTGGTTGTACTaGAGATCCAGCCGTCTGAGCTGCCCCAGACGGTGG +
Preference number: 6 (lower is better)
Translates to: KVLGWRERIWLY*RSSRLSCPRRW
Trigger: CCACCGTCTGGGGCAGCTCAGACGGCTGGATCTGCAGTACAACCAGATCCGTTCTCTCCACCCCAAGACCTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS GCA 72 bp TCAGGCGTCCAATCTCGTTGCCGTTGGCGTAAAGGATaGGCAACTTGCGCAGCGGAGCCAACGTGCCAGGAA +
Preference number: 6 (lower is better)
Translates to: SGVQSRCRWRKG*ATCAAEPTCQE
Trigger: TTCCTGGCACGTTGGCTCCGCTGCGCAAGTTGCGCATCCTTTACGCCAACGGCAACGAGATTGGACGCCTGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS CAA 72 bp TGGCGCAGAGAGGGTTGCAGCTCGTTGGCCGAGAGATaGAGGAATCGAAGCTTACCCAGCTGGCTGAAGGCG +
Preference number: 6 (lower is better)
Translates to: WRREGCSSLAER*RNRSLPSWLKA
Trigger: CGCCTTCAGCCAGCTGGGTAAGCTTCGATTCCTCAATCTCTCGGCCAACGAGCTGCAACCCTCTCTGCGCCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS CAA 90 bp CGTGAGAGCTTCTCGAAGGTCTTGGGGTGGAGAGAACGGATCTGGTaGTACTGCAGATCCAGCCGTCTGAGCTGCCCCAGACGGTGGAAG +
Preference number: 6 (lower is better)
Translates to: RESFSKVLGWRERIW*YCRSSRLSCPRRWK
Trigger: CTTCCACCGTCTGGGGCAGCTCAGACGGCTGGATCTGCAGTACAACCAGATCCGTTCTCTCCACCCCAAGACCTTCGAGAAGCTCTCACG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS CCA 72 bp AGCTTCTCGAAGGTCTTGGGGTGGAGAGAACGGATCTaGTTGTACTGCAGATCCAGCCGTCTGAGCTGCCCC +
Preference number: 6 (lower is better)
Translates to: SFSKVLGWRERI*LYCRSSRLSCP
Trigger: GGGGCAGCTCAGACGGCTGGATCTGCAGTACAACCAGATCCGTTCTCTCCACCCCAAGACCTTCGAGAAGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS CAA 90 bp CAGCGCACCGAGGCGCTGTTGGCGCTCACCGCCTCTACTGTCAGGTaGCACAGAATGAATTTGTTGAAGTCACAGGGGTCAGACACCAGA +
Preference number: 6 (lower is better)
Translates to: QRTEALLALTASTVR*HRMNLLKSQGSDTR
Trigger: TCTGGTGTCTGACCCCTGTGACTTCAACAAATTCATTCTGTGCAACCTGACAGTAGAGGCGGTGAGCGCCAACAGCGCCTCGGTGCGCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS CCA 72 bp TACTGCAGATCCAGCCGTCTGAGCTGCCCCAGACGGTaGAAGTCGAAGGCGGTGATGTTGGTGATGAAGTTG +
Preference number: 6 (lower is better)
Translates to: YCRSSRLSCPRR*KSKAVMLVMKL
Trigger: CAACTTCATCACCAACATCACCGCCTTCGACTTCCACCGTCTGGGGCAGCTCAGACGGCTGGATCTGCAGTA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS CAA 72 bp TTCTCGAAGGTCTTGGGGTGGAGAGAACGGATCTGGTaGTACTGCAGATCCAGCCGTCTGAGCTGCCCCAGA +
Preference number: 6 (lower is better)
Translates to: FSKVLGWRERIW*YCRSSRLSCPR
Trigger: TCTGGGGCAGCTCAGACGGCTGGATCTGCAGTACAACCAGATCCGTTCTCTCCACCCCAAGACCTTCGAGAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS CAA 90 bp TTCCCCAGGTACAGCTCCTCTAGTCGTGAGAGCTTCTCGAAGGTCTaGGGGTGGAGAGAACGGATCTGGTTGTACTGCAGATCCAGCCGT +
Preference number: 6 (lower is better)
Translates to: FPRYSSSSRESFSKV*GWRERIWLYCRSSR
Trigger: ACGGCTGGATCTGCAGTACAACCAGATCCGTTCTCTCCACCCCAAGACCTTCGAGAAGCTCTCACGACTAGAGGAGCTGTACCTGGGGAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS CCA 72 bp TCCTCTAGTCGTGAGAGCTTCTCGAAGGTCTTGGGGTaGAGAGAACGGATCTGGTTGTACTGCAGATCCAGC +
Preference number: 6 (lower is better)
Translates to: SSSRESFSKVLG*RERIWLYCRSS
Trigger: GCTGGATCTGCAGTACAACCAGATCCGTTCTCTCCACCCCAAGACCTTCGAGAAGCTCTCACGACTAGAGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS CCA 72 bp GAATTTGTTGAAGTCACAGGGGTCAGACACCAGAGGTaGCAAACCAACCCCACTAACGGACTGGACTGCGCT +
Preference number: 6 (lower is better)
Translates to: EFVEVTGVRHQR*QTNPTNGLDCA
Trigger: AGCGCAGTCCAGTCCGTTAGTGGGGTTGGTTTGCCACCTCTGGTGTCTGACCCCTGTGACTTCAACAAATTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS CAA 90 bp TTGGCGCTCACCGCCTCTACTGTCAGGTTGCACAGAATGAATTTGTaGAAGTCACAGGGGTCAGACACCAGAGGTGGCAAACCAACCCCA +
Preference number: 6 (lower is better)
Translates to: LALTASTVRLHRMNL*KSQGSDTRGGKPTP
Trigger: TGGGGTTGGTTTGCCACCTCTGGTGTCTGACCCCTGTGACTTCAACAAATTCATTCTGTGCAACCTGACAGTAGAGGCGGTGAGCGCCAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS CAA 90 bp CTGTTGGCGCTCACCGCCTCTACTGTCAGGTTGCACAGAATGAATTaGTTGAAGTCACAGGGGTCAGACACCAGAGGTGGCAAACCAACC +
Preference number: 6 (lower is better)
Translates to: LLALTASTVRLHRMN*LKSQGSDTRGGKPT
Trigger: GGTTGGTTTGCCACCTCTGGTGTCTGACCCCTGTGACTTCAACAAATTCATTCTGTGCAACCTGACAGTAGAGGCGGTGAGCGCCAACAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS CCA 72 bp ACAGCTCCTCTAGTCGTGAGAGCTTCTCGAAGGTCTTaGGGTGGAGAGAACGGATCTGGTTGTACTGCAGAT +
Preference number: 6 (lower is better)
Translates to: TAPLVVRASRRS*GGENGSGCTAD
Trigger: ATCTGCAGTACAACCAGATCCGTTCTCTCCACCCCAAGACCTTCGAGAAGCTCTCACGACTAGAGGAGCTGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS CAA 72 bp TACAGCTCCTCTAGTCGTGAGAGCTTCTCGAAGGTCTaGGGGTGGAGAGAACGGATCTGGTTGTACTGCAGA +
Preference number: 6 (lower is better)
Translates to: YSSSSRESFSKV*GWRERIWLYCR
Trigger: TCTGCAGTACAACCAGATCCGTTCTCTCCACCCCAAGACCTTCGAGAAGCTCTCACGACTAGAGGAGCTGTA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5
CDS CAA 72 bp ACCGCCTCTACTGTCAGGTTGCACAGAATGAATTTGTaGAAGTCACAGGGGTCAGACACCAGAGGTGGCAAA +
Preference number: 6 (lower is better)
Translates to: TASTVRLHRMNL*KSQGSDTRGGK
Trigger: TTTGCCACCTCTGGTGTCTGACCCCTGTGACTTCAACAAATTCATTCTGTGCAACCTGACAGTAGAGGCGGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127748.5