RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for TRHR2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000039079

Ensembl transcript IDs: ENSMUST00000044123.2

Found 61 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp GGAATCTCTGGAGACCCAGAAGCAAGGAGCTGCCTGCCCCTCTCCTaGTGGCCCGCCAGTGCTCAGAACAGATGCCAACCAGGGGAGTGG +
Preference number: 1 (lower is better)
Translates to: GISGDPEARSCLPLS*WPASAQNRCQPGEW
Trigger: CCACTCCCCTGGTTGGCATCTGTTCTGAGCACTGGCGGGCCATCAGGAGAGGGGCAGGCAGCTCCTTGCTTCTGGGTCTCCAGAGATTCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000044123.2
3UTR GCA 90 bp TTCATGGTAAAGGAATCTCTGGAGACCCAGAAGCAAGGAGCTGCCTaGCCCTCTCCTGATGGCCCGCCAGTGCTCAGAACAGATGCCAAC +
Preference number: 1 (lower is better)
Translates to: FMVKESLETQKQGAA*PSPDGPPVLRTDAN
Trigger: GTTGGCATCTGTTCTGAGCACTGGCGGGCCATCAGGAGAGGGGCAGGCAGCTCCTTGCTTCTGGGTCTCCAGAGATTCCTTTACCATGAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044123.2
3UTR-3UTR GCA 90 bp AGCGTTCGAGTGTCCTTCTTCATGGTAAAGGAATCTCTGGAGACCCAGAAGCAAAGTGCTCAGAACAGATaGCAACCAGGGGAGTGGAGT +
Preference number: 2 (lower is better)
Translates to: SVRVSFFMVKESLETQKQSAQNR*QPGEWS
Trigger: ACTCCACTCCCCTGGTTGGCATCTGTTCTGAGCACT...TTGCTTCTGGGTCTCCAGAGATTCCTTTACCATGAAGAAGGACACTCGAACGCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044123.2
3UTR TCA 72 bp GGAGACCCAGAAGCAAGGAGCTGCCTGCCCCTCTCCTaGTGGCCCGCCAGTGCTCAGAACAGATGCCAACCA +
Preference number: 3 (lower is better)
Translates to: GDPEARSCLPLS*WPASAQNRCQP
Trigger: TGGTTGGCATCTGTTCTGAGCACTGGCGGGCCATCAGGAGAGGGGCAGGCAGCTCCTTGCTTCTGGGTCTCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044123.2
3UTR GCA 72 bp AAGGAGCTGCCTGCCCCTCTCCTGATGGCCCGCCAGTaGTCAGAACAGATGCCAACCAGGGGAGTGGAGTCA +
Preference number: 3 (lower is better)
Translates to: KELPAPLLMARQ*SEQMPTRGVES
Trigger: TGACTCCACTCCCCTGGTTGGCATCTGTTCTGAGCACTGGCGGGCCATCAGGAGAGGGGCAGGCAGCTCCTT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000044123.2
3UTR GCA 72 bp AAGGAATCTCTGGAGACCCAGAAGCAAGGAGCTGCCTaGCCCTCTCCTGATGGCCCGCCAGTGCTCAGAACA +
Preference number: 3 (lower is better)
Translates to: KESLETQKQGAA*PSPDGPPVLRT
Trigger: TGTTCTGAGCACTGGCGGGCCATCAGGAGAGGGGCAGGCAGCTCCTTGCTTCTGGGTCTCCAGAGATTCCTT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044123.2
CDS-3UTR TCA 90 bp CCTGCCCCTCTCCTGATGGCCCGCCAGTGCTCAGAACAGATGCCAACCAGGGGAAGCTGCTGCTGGACCTaGGACCTCACGGGAGCCCAG +
Preference number: 4 (lower is better)
Translates to: PAPLLMARQCSEQMPTRGSCCWT*DLTGAQ
Trigger: CTGGGCTCCCGTGAGGTCTCAGGTCCAGCAGCAGCT...TCCCCTGGTTGGCATCTGTTCTGAGCACTGGCGGGCCATCAGGAGAGGGGCAGG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000044123.2
CDS-3UTR GCA 90 bp TGGCCCGCCAGTGCTCAGAACAGATGCCAACCAGGGGAGTGGAGTCAGGGGCCAGGGCAGCACTGTAGTTaGTGGTGGGGGCGCATGCTG +
Preference number: 4 (lower is better)
Translates to: WPASAQNRCQPGEWSQGPGQHCS*WWGRML
Trigger: CAGCATGCGCCCCCACCAGCAACTACAGTGCTGCCC...TGGCCCCTGACTCCACTCCCCTGGTTGGCATCTGTTCTGAGCACTGGCGGGCCA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000044123.2
CDS-3UTR CCA 90 bp CCGCCAGTGCTCAGAACAGATGCCAACCAGGGGAGTGGAGTCAGGGGCCAGGCACCCTCGCTCTGCCCATaGGACTGCCTCTCCTTCTGC +
Preference number: 4 (lower is better)
Translates to: PPVLRTDANQGSGVRGQAPSLCP*DCLSFC
Trigger: GCAGAAGGAGAGGCAGTCCCATGGGCAGAGCGAGGG...TGCCTGGCCCCTGACTCCACTCCCCTGGTTGGCATCTGTTCTGAGCACTGGCGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000044123.2
CDS-3UTR CCA 90 bp CAGAAGCAAGGAGCTGCCTGCCCCTCTCCTGATGGCCCGCCAGTGCTCAGAACACCACCAGGACCACCATaGCATTGCCCACGATGCCCA +
Preference number: 4 (lower is better)
Translates to: QKQGAACPSPDGPPVLRTPPGPP*HCPRCP
Trigger: TGGGCATCGTGGGCAATGCCATGGTGGTCCTGGTGG...TGTTCTGAGCACTGGCGGGCCATCAGGAGAGGGGCAGGCAGCTCCTTGCTTCTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044123.2
CDS-3UTR CCA 90 bp GATGGCCCGCCAGTGCTCAGAACAGATGCCAACCAGGGGAGTGGAGTCAGGGGCTGGTGGCCTGCTTCCTaGAGGACATTGAGCTCTTGG +
Preference number: 4 (lower is better)
Translates to: DGPPVLRTDANQGSGVRGWWPAS*RTLSSW
Trigger: CCAAGAGCTCAATGTCCTCCAGGAAGCAGGCCACCA...GCCCCTGACTCCACTCCCCTGGTTGGCATCTGTTCTGAGCACTGGCGGGCCATC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000044123.2
CDS-3UTR CCA 90 bp GAATCTCTGGAGACCCAGAAGCAAGGAGCTGCCTGCCCCTCTCCTGATGGCCCGAAGTGGGGCTCATGCTaGCAACGCAGGGAAGCAGCT +
Preference number: 4 (lower is better)
Translates to: ESLETQKQGAACPSPDGPKWGSC*QRREAA
Trigger: AGCTGCTTCCCTGCGTTGCCAGCATGAGCCCCACTT...CGGGCCATCAGGAGAGGGGCAGGCAGCTCCTTGCTTCTGGGTCTCCAGAGATTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000044123.2
CDS-3UTR TCA 90 bp GGAGCTGCCTGCCCCTCTCCTGATGGCCCGCCAGTGCTCAGAACAGATGCCAACAGCAGGAGGAGACATTaGTGCCTAGGTACTGGAAGT +
Preference number: 4 (lower is better)
Translates to: GAACPSPDGPPVLRTDANSRRRH*CLGTGS
Trigger: ACTTCCAGTACCTAGGCATCAATGTCTCCTCCTGCT...GTTGGCATCTGTTCTGAGCACTGGCGGGCCATCAGGAGAGGGGCAGGCAGCTCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044123.2
CDS-3UTR TCA 90 bp AAGGAGCTGCCTGCCCCTCTCCTGATGGCCCGCCAGTGCTCAGAACAGATGCCAGGTTGTCACGGACATTaGGGTCCACCAGAAAGAACC +
Preference number: 4 (lower is better)
Translates to: KELPAPLLMARQCSEQMPGCHGH*GPPERT
Trigger: GGTTCTTTCTGGTGGACCTCAATGTCCGTGACAACC...TGGCATCTGTTCTGAGCACTGGCGGGCCATCAGGAGAGGGGCAGGCAGCTCCTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044123.2
CDS-3UTR TCA 90 bp GATGGCCCGCCAGTGCTCAGAACAGATGCCAACCAGGGGAGTGGAGTCAGGGGCCCAGCAAGGGTGCAATaGAGAAGACAGCAAAGTCCA +
Preference number: 4 (lower is better)
Translates to: DGPPVLRTDANQGSGVRGPARVQ*RRQQSP
Trigger: TGGACTTTGCTGTCTTCTTCATTGCACCCTTGCTGG...GCCCCTGACTCCACTCCCCTGGTTGGCATCTGTTCTGAGCACTGGCGGGCCATC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000044123.2
CDS-3UTR GCA 90 bp CCGCCAGTGCTCAGAACAGATGCCAACCAGGGGAGTGGAGTCAGGGGCCAGGCAAGTGCACACGGTCTGTaGTCTCATTGGGTGGCAAAT +
Preference number: 4 (lower is better)
Translates to: PPVLRTDANQGSGVRGQASAHGL*SHWVAN
Trigger: ATTTGCCACCCAATGAGAGCACAGACCGTGTGCACT...TGCCTGGCCCCTGACTCCACTCCCCTGGTTGGCATCTGTTCTGAGCACTGGCGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000044123.2
CDS-3UTR GCA 90 bp GATGGCCCGCCAGTGCTCAGAACAGATGCCAACCAGGGGAGTGGAGTCAGGGGCGGTCCCCAGCAAGGGTaGAATGAAGAAGACAGCAAA +
Preference number: 4 (lower is better)
Translates to: DGPPVLRTDANQGSGVRGGPQQG*NEEDSK
Trigger: TTTGCTGTCTTCTTCATTGCACCCTTGCTGGGGACC...GCCCCTGACTCCACTCCCCTGGTTGGCATCTGTTCTGAGCACTGGCGGGCCATC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000044123.2
CDS-3UTR GCA 90 bp AATCTCTGGAGACCCAGAAGCAAGGAGCTGCCTGCCCCTCTCCTGATGGCCCGCGGGGGTCCAGAGCACTaGAAAGAGCAACACAATCAC +
Preference number: 4 (lower is better)
Translates to: NLWRPRSKELPAPLLMARGGPEH*KEQHNH
Trigger: GTGATTGTGTTGCTCTTTGCAGTGCTCTGGACCCCC...GCGGGCCATCAGGAGAGGGGCAGGCAGCTCCTTGCTTCTGGGTCTCCAGAGATT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000044123.2
CDS-3UTR CCA 90 bp CTTCTTCATGGTAAAGGAATCTCTGGAGACCCAGAAGCAAGGAGCTGCCTGCCCCGGCCAGCATCCTGGTaGCCTGCTTCCTGGAGGACA +
Preference number: 4 (lower is better)
Translates to: LLHGKGISGDPEARSCLPRPASW*PASWRT
Trigger: TGTCCTCCAGGAAGCAGGCCACCAGGATGCTGGCCG...GGGCAGGCAGCTCCTTGCTTCTGGGTCTCCAGAGATTCCTTTACCATGAAGAAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044123.2
CDS-3UTR TCA 90 bp GTAAAGGAATCTCTGGAGACCCAGAAGCAAGGAGCTGCCTGCCCCTCTCCTGATTGTACCTCTCCACAGTaGAGGCCAGGATGGAGCAGG +
Preference number: 4 (lower is better)
Translates to: VKESLETQKQGAACPSPDCTSPQ*RPGWSR
Trigger: CCTGCTCCATCCTGGCCTTCACTGTGGAGAGGTACA...ATCAGGAGAGGGGCAGGCAGCTCCTTGCTTCTGGGTCTCCAGAGATTCCTTTAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044123.2
CDS-3UTR TCA 90 bp TGGCCCGCCAGTGCTCAGAACAGATGCCAACCAGGGGAGTGGAGTCAGGGGCCATGGGACAATGGGCTCTaGAATAAGATCCTTCCAATG +
Preference number: 4 (lower is better)
Translates to: WPASAQNRCQPGEWSQGPWDNGL*NKILPM
Trigger: CATTGGAAGGATCTTATTTCAGAGCCCATTGTCCCA...TGGCCCCTGACTCCACTCCCCTGGTTGGCATCTGTTCTGAGCACTGGCGGGCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000044123.2
CDS-3UTR CCA 90 bp CTTCTTCATGGTAAAGGAATCTCTGGAGACCCAGAAGCAAGGAGCTGCCTGCCCAGTCCAGCAGGTAGATaGGCAGGTAGAGGCCTCGGG +
Preference number: 4 (lower is better)
Translates to: LLHGKGISGDPEARSCLPSPAGR*AGRGLG
Trigger: CCCGAGGCCTCTACCTGCCCATCTACCTGCTGGACT...GGGCAGGCAGCTCCTTGCTTCTGGGTCTCCAGAGATTCCTTTACCATGAAGAAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044123.2
CDS-3UTR TCA 90 bp AGTGTCCTTCTTCATGGTAAAGGAATCTCTGGAGACCCAGAAGCAAGGAGCTGCCAGCGAGAGCCAGGCTaGCCAGGTAGCAGTTGGTGG +
Preference number: 4 (lower is better)
Translates to: SVLLHGKGISGDPEARSCQREPG*PGSSWW
Trigger: CCACCAACTGCTACCTGGTCAGCCTGGCTCTCGCTG...GCAGCTCCTTGCTTCTGGGTCTCCAGAGATTCCTTTACCATGAAGAAGGACACT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044123.2
CDS-3UTR GCA 90 bp AGTGTCCTTCTTCATGGTAAAGGAATCTCTGGAGACCCAGAAGCAAGGAGCTGCGGTGTACCCTCGCTCTaGCCATGGGACTGCCTCTCC +
Preference number: 4 (lower is better)
Translates to: SVLLHGKGISGDPEARSCGVPSL*PWDCLS
Trigger: GGAGAGGCAGTCCCATGGGCAGAGCGAGGGTACACC...GCAGCTCCTTGCTTCTGGGTCTCCAGAGATTCCTTTACCATGAAGAAGGACACT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044123.2
CDS-3UTR CCA 90 bp GAGCGTTCGAGTGTCCTTCTTCATGGTAAAGGAATCTCTGGAGACCCAGAAGCATCACGGCCAGCATCCTaGTGGCCTGCTTCCTGGAGG +
Preference number: 4 (lower is better)
Translates to: ERSSVLLHGKGISGDPEASRPAS*WPASWR
Trigger: CCTCCAGGAAGCAGGCCACCAGGATGCTGGCCGTGA...TGCTTCTGGGTCTCCAGAGATTCCTTTACCATGAAGAAGGACACTCGAACGCTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044123.2
CDS-3UTR GCA 90 bp TCGAGTGTCCTTCTTCATGGTAAAGGAATCTCTGGAGACCCAGAAGCAAGGAGCTGGTGTAGACGCAGGTaGGGCAGAACAGCAGGACCC +
Preference number: 4 (lower is better)
Translates to: SSVLLHGKGISGDPEARSWCRRR*GRTAGP
Trigger: GGGTCCTGCTGTTCTGCCGCACCTGCGTCTACACCA...GCTCCTTGCTTCTGGGTCTCCAGAGATTCCTTTACCATGAAGAAGGACACTCGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044123.2
CDS-3UTR CCA 90 bp GAGCGTTCGAGTGTCCTTCTTCATGGTAAAGGAATCTCTGGAGACCCAGAAGCACAGCACTGTAGTTGCTaGTGGGGGCGCATGCTGCAC +
Preference number: 4 (lower is better)
Translates to: ERSSVLLHGKGISGDPEAQHCSC*WGRMLH
Trigger: GTGCAGCATGCGCCCCCACCAGCAACTACAGTGCTG...TGCTTCTGGGTCTCCAGAGATTCCTTTACCATGAAGAAGGACACTCGAACGCTC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000044123.2
CDS-3UTR GCA 90 bp AGTGTCCTTCTTCATGGTAAAGGAATCTCTGGAGACCCAGAAGCAAGGAGCTGCGACTGCCTCTCCTTCTaGCAGGCCTCCTGGGACAAT +
Preference number: 4 (lower is better)
Translates to: SVLLHGKGISGDPEARSCDCLSF*QASWDN
Trigger: ATTGTCCCAGGAGGCCTGGCAGAAGGAGAGGCAGTC...GCAGCTCCTTGCTTCTGGGTCTCCAGAGATTCCTTTACCATGAAGAAGGACACT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044123.2
CDS-3UTR GCA 90 bp TTCATGGTAAAGGAATCTCTGGAGACCCAGAAGCAAGGAGCTGCCTGCCCCTCTTCACGGGAGCCCAGTTaGATCTTCTCAGTTCCTAGG +
Preference number: 4 (lower is better)
Translates to: FMVKESLETQKQGAACPSSREPS*IFSVPR
Trigger: CCTAGGAACTGAGAAGATGCAACTGGGCTCCCGTGA...AGAGGGGCAGGCAGCTCCTTGCTTCTGGGTCTCCAGAGATTCCTTTACCATGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044123.2
CDS-3UTR GCA 90 bp AGTGTCCTTCTTCATGGTAAAGGAATCTCTGGAGACCCAGAAGCAAGGAGCTGCAGCATCCTGGTGGCCTaGTTCCTGGAGGACATTGAG +
Preference number: 4 (lower is better)
Translates to: SVLLHGKGISGDPEARSCSILVA*FLEDIE
Trigger: CTCAATGTCCTCCAGGAAGCAGGCCACCAGGATGCT...GCAGCTCCTTGCTTCTGGGTCTCCAGAGATTCCTTTACCATGAAGAAGGACACT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044123.2
CDS-3UTR CCA 90 bp GAGCGTTCGAGTGTCCTTCTTCATGGTAAAGGAATCTCTGGAGACCCAGAAGCATCATTGGGTGGCAAATaGCGATGTACCTCTCCACAG +
Preference number: 4 (lower is better)
Translates to: ERSSVLLHGKGISGDPEASLGGK*RCTSPQ
Trigger: CTGTGGAGAGGTACATCGCCATTTGCCACCCAATGA...TGCTTCTGGGTCTCCAGAGATTCCTTTACCATGAAGAAGGACACTCGAACGCTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044123.2
CDS-3UTR CCA 90 bp AGTGTCCTTCTTCATGGTAAAGGAATCTCTGGAGACCCAGAAGCAAGGAGCTGCGGTCTGTGCTCTCATTaGGTGGCAAATGGCGATGTA +
Preference number: 4 (lower is better)
Translates to: SVLLHGKGISGDPEARSCGLCSH*VANGDV
Trigger: TACATCGCCATTTGCCACCCAATGAGAGCACAGACC...GCAGCTCCTTGCTTCTGGGTCTCCAGAGATTCCTTTACCATGAAGAAGGACACT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044123.2
CDS GCA 90 bp GGAGGTCTCCTGGGCAGCACTGTAGTTGCTGGTGGGGGCGCATGCTaGACGTCTCTGGGACCCAGCTGCCCGGCACCAGCACAGTTTCAG +
Preference number: 5 (lower is better)
Translates to: GGLLGSTVVAGGGAC*TSLGPSCPAPAQFQ
Trigger: CTGAAACTGTGCTGGTGCCGGGCAGCTGGGTCCCAGAGACGTGCAGCATGCGCCCCCACCAGCAACTACAGTGCTGCCCAGGAGACCTCC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000044123.2
CDS-3UTR CAA 90 bp CCTGCCCCTCTCCTGATGGCCCGCCAGTGCTCAGAACAGATGCCAACCAGGGGACGGGCCAGGAAGGAGTaGAGCAGCACCAGTGTGCGG +
Preference number: 5 (lower is better)
Translates to: PAPLLMARQCSEQMPTRGRARKE*SSTSVR
Trigger: CCGCACACTGGTGCTGCTCAACTCCTTCCTGGCCCG...TCCCCTGGTTGGCATCTGTTCTGAGCACTGGCGGGCCATCAGGAGAGGGGCAGG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000044123.2
CDS TCA 90 bp AGCCAGGCTGACCAGGTAGCAGTTGGTGGGTGTGTGCATGTCACGTaGGGTCAGCACCACCAGGACCACCATGGCATTGCCCACGATGCC +
Preference number: 5 (lower is better)
Translates to: SQADQVAVGGCVHVT*GQHHQDHHGIAHDA
Trigger: GGCATCGTGGGCAATGCCATGGTGGTCCTGGTGGTGCTGACCTCACGTGACATGCACACACCCACCAACTGCTACCTGGTCAGCCTGGCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044123.2
CDS CCA 90 bp CGTCTGGCCCGGGCCACAGTGCACACGGTCTGTGCTCTCATTGGGTaGCAAATGGCGATGTACCTCTCCACAGTGAAGGCCAGGATGGAG +
Preference number: 5 (lower is better)
Translates to: RLARATVHTVCALIG*QMAMYLSTVKARME
Trigger: CTCCATCCTGGCCTTCACTGTGGAGAGGTACATCGCCATTTGCCACCCAATGAGAGCACAGACCGTGTGCACTGTGGCCCGGGCCAGACG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044123.2
CDS GCA 90 bp TCAGCACCACCAGGACCACCATGGCATTGCCCACGATGCCCACGGTaGACACCAGGAGGACCAGGAGGACCGAGACTACTTTGTACTCTG +
Preference number: 5 (lower is better)
Translates to: SAPPGPPWHCPRCPR*TPGGPGGPRLLCTL
Trigger: CAGAGTACAAAGTAGTCTCGGTCCTCCTGGTCCTCCTGGTGTGCACCGTGGGCATCGTGGGCAATGCCATGGTGGTCCTGGTGGTGCTGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044123.2
CDS CCA 90 bp GATCCGTCTGGCCCGGGCCACAGTGCACACGGTCTGTGCTCTCATTaGGTGGCAAATGGCGATGTACCTCTCCACAGTGAAGGCCAGGAT +
Preference number: 5 (lower is better)
Translates to: DPSGPGHSAHGLCSH*VANGDVPLHSEGQD
Trigger: ATCCTGGCCTTCACTGTGGAGAGGTACATCGCCATTTGCCACCCAATGAGAGCACAGACCGTGTGCACTGTGGCCCGGGCCAGACGGATC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044123.2
CDS-3UTR CAA 90 bp AATCTCTGGAGACCCAGAAGCAAGGAGCTGCCTGCCCCTCTCCTGATGGCCCGCGAGGACATTGAGCTCTaGGACCTAGAGCAGTTGCCT +
Preference number: 5 (lower is better)
Translates to: NLWRPRSKELPAPLLMAREDIEL*DLEQLP
Trigger: AGGCAACTGCTCTAGGTCCAAGAGCTCAATGTCCTC...GCGGGCCATCAGGAGAGGGGCAGGCAGCTCCTTGCTTCTGGGTCTCCAGAGATT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044123.2
CDS GCA 90 bp TCTCTGGGACCCAGCTGCCCGGCACCAGCACAGTTTCAGGAAGGCTaGCCGGAATTTCTGCGACATGAGGCTGTAGATGACAGGGTTGAT +
Preference number: 5 (lower is better)
Translates to: SLGPSCPAPAQFQEG*PEFLRHEAVDDRVD
Trigger: ATCAACCCTGTCATCTACAGCCTCATGTCGCAGAAATTCCGGGCAGCCTTCCTGAAACTGTGCTGGTGCCGGGCAGCTGGGTCCCAGAGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044123.2
CDS GCA 90 bp GATCCTTCCAATGAACCCATAGAGCACGAGGGTCCCCAGCAAGGGTaGAATGAAGAAGACAGCAAAGTCCAGCAGGTAGATGGGCAGGTA +
Preference number: 5 (lower is better)
Translates to: DPSNEPIEHEGPQQG*NEEDSKVQQVDGQV
Trigger: TACCTGCCCATCTACCTGCTGGACTTTGCTGTCTTCTTCATTGCACCCTTGCTGGGGACCCTCGTGCTCTATGGGTTCATTGGAAGGATC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044123.2
CDS GCA 72 bp GGTGGGGGCGCATGCTGCACGTCTCTGGGACCCAGCTaGCCGGCACCAGCACAGTTTCAGGAAGGCTGCCCG +
Preference number: 6 (lower is better)
Translates to: GGGACCTSLGPS*PAPAQFQEGCP
Trigger: CGGGCAGCCTTCCTGAAACTGTGCTGGTGCCGGGCAGCTGGGTCCCAGAGACGTGCAGCATGCGCCCCCACC
69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000044123.2
CDS GCA 72 bp CTGGGCAGCACTGTAGTTGCTGGTGGGGGCGCATGCTaGACGTCTCTGGGACCCAGCTGCCCGGCACCAGCA +
Preference number: 6 (lower is better)
Translates to: LGSTVVAGGGAC*TSLGPSCPAPA
Trigger: TGCTGGTGCCGGGCAGCTGGGTCCCAGAGACGTGCAGCATGCGCCCCCACCAGCAACTACAGTGCTGCCCAG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000044123.2
CDS CCA 72 bp CTAGAGCAGTTGCCTGGTGTACCCTCGCTCTGCCCATaGGACTGCCTCTCCTTCTGCCAGGCCTCCTGGGAC +
Preference number: 6 (lower is better)
Translates to: LEQLPGVPSLCP*DCLSFCQASWD
Trigger: GTCCCAGGAGGCCTGGCAGAAGGAGAGGCAGTCCCATGGGCAGAGCGAGGGTACACCAGGCAACTGCTCTAG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044123.2
CDS CAA 90 bp GTGTGCATGTCACGTGAGGTCAGCACCACCAGGACCACCATGGCATaGCCCACGATGCCCACGGTGCACACCAGGAGGACCAGGAGGACC +
Preference number: 6 (lower is better)
Translates to: VCMSREVSTTRTTMA*PTMPTVHTRRTRRT
Trigger: GGTCCTCCTGGTCCTCCTGGTGTGCACCGTGGGCATCGTGGGCAATGCCATGGTGGTCCTGGTGGTGCTGACCTCACGTGACATGCACAC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044123.2
CDS GCA 72 bp TTGGACCTAGAGCAGTTGCCTGGTGTACCCTCGCTCTaGCCATGGGACTGCCTCTCCTTCTGCCAGGCCTCC +
Preference number: 6 (lower is better)
Translates to: LDLEQLPGVPSL*PWDCLSFCQAS
Trigger: GGAGGCCTGGCAGAAGGAGAGGCAGTCCCATGGGCAGAGCGAGGGTACACCAGGCAACTGCTCTAGGTCCAA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044123.2
CDS CCA 72 bp GCATGTCACGTGAGGTCAGCACCACCAGGACCACCATaGCATTGCCCACGATGCCCACGGTGCACACCAGGA +
Preference number: 6 (lower is better)
Translates to: ACHVRSAPPGPP*HCPRCPRCTPG
Trigger: TCCTGGTGTGCACCGTGGGCATCGTGGGCAATGCCATGGTGGTCCTGGTGGTGCTGACCTCACGTGACATGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044123.2
CDS GCA 72 bp GATCCGTCTGGCCCGGGCCACAGTGCACACGGTCTGTaGTCTCATTGGGTGGCAAATGGCGATGTACCTCTC +
Preference number: 6 (lower is better)
Translates to: DPSGPGHSAHGL*SHWVANGDVPL
Trigger: GAGAGGTACATCGCCATTTGCCACCCAATGAGAGCACAGACCGTGTGCACTGTGGCCCGGGCCAGACGGATC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044123.2
CDS GCA 72 bp GCTGCTGCTGGACCTGAGACCTCACGGGAGCCCAGTTaGATCTTCTCAGTTCCTAGGGAGGTCTCCTGGGCA +
Preference number: 6 (lower is better)
Translates to: AAAGPETSREPS*IFSVPREVSWA
Trigger: TGCCCAGGAGACCTCCCTAGGAACTGAGAAGATGCAACTGGGCTCCCGTGAGGTCTCAGGTCCAGCAGCAGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044123.2
CDS TCA 72 bp GGCCAGCATCCTGGTGGCCTGCTTCCTGGAGGACATTaGGCTCTTGGACCTAGAGCAGTTGCCTGGTGTACC +
Preference number: 6 (lower is better)
Translates to: GQHPGGLLPGGH*ALGPRAVAWCT
Trigger: GGTACACCAGGCAACTGCTCTAGGTCCAAGAGCTCAATGTCCTCCAGGAAGCAGGCCACCAGGATGCTGGCC
60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044123.2
CDS TCA 72 bp ATGCTGGCAACGCAGGGAAGCAGCTGCTGCTGGACCTaGGACCTCACGGGAGCCCAGTTGCATCTTCTCAGT +
Preference number: 6 (lower is better)
Translates to: MLATQGSSCCWT*DLTGAQLHLLS
Trigger: ACTGAGAAGATGCAACTGGGCTCCCGTGAGGTCTCAGGTCCAGCAGCAGCTGCTTCCCTGCGTTGCCAGCAT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044123.2
CDS GCA 72 bp GAGCAGCACCAGTGTGCGGTAGGGGGTCCAGAGCACTaGAAAGAGCAACACAATCACGGCCAGCATCCTGGT +
Preference number: 6 (lower is better)
Translates to: EQHQCAVGGPEH*KEQHNHGQHPG
Trigger: ACCAGGATGCTGGCCGTGATTGTGTTGCTCTTTGCAGTGCTCTGGACCCCCTACCGCACACTGGTGCTGCTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000044123.2
CDS CCA 72 bp CGGGCCACAGTGCACACGGTCTGTGCTCTCATTGGGTaGCAAATGGCGATGTACCTCTCCACAGTGAAGGCC +
Preference number: 6 (lower is better)
Translates to: RATVHTVCALIG*QMAMYLSTVKA
Trigger: GGCCTTCACTGTGGAGAGGTACATCGCCATTTGCCACCCAATGAGAGCACAGACCGTGTGCACTGTGGCCCG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044123.2
CDS CCA 72 bp GGCCCGGGCCACAGTGCACACGGTCTGTGCTCTCATTaGGTGGCAAATGGCGATGTACCTCTCCACAGTGAA +
Preference number: 6 (lower is better)
Translates to: GPGHSAHGLCSH*VANGDVPLHSE
Trigger: TTCACTGTGGAGAGGTACATCGCCATTTGCCACCCAATGAGAGCACAGACCGTGTGCACTGTGGCCCGGGCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044123.2
CDS CAA 72 bp ATCCTGGTGGCCTGCTTCCTGGAGGACATTGAGCTCTaGGACCTAGAGCAGTTGCCTGGTGTACCCTCGCTC +
Preference number: 6 (lower is better)
Translates to: ILVACFLEDIEL*DLEQLPGVPSL
Trigger: GAGCGAGGGTACACCAGGCAACTGCTCTAGGTCCAAGAGCTCAATGTCCTCCAGGAAGCAGGCCACCAGGAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044123.2
CDS CCA 72 bp CTGCAAAGAGCAACACAATCACGGCCAGCATCCTGGTaGCCTGCTTCCTGGAGGACATTGAGCTCTTGGACC +
Preference number: 6 (lower is better)
Translates to: LQRATQSRPASW*PASWRTLSSWT
Trigger: GGTCCAAGAGCTCAATGTCCTCCAGGAAGCAGGCCACCAGGATGCTGGCCGTGATTGTGTTGCTCTTTGCAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044123.2
CDS CCA 72 bp GCACTGCAAAGAGCAACACAATCACGGCCAGCATCCTaGTGGCCTGCTTCCTGGAGGACATTGAGCTCTTGG +
Preference number: 6 (lower is better)
Translates to: ALQRATQSRPAS*WPASWRTLSSW
Trigger: CCAAGAGCTCAATGTCCTCCAGGAAGCAGGCCACCAGGATGCTGGCCGTGATTGTGTTGCTCTTTGCAGTGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044123.2
CDS TCA 72 bp ACCCATAGAGCACGAGGGTCCCCAGCAAGGGTGCAATaGAGAAGACAGCAAAGTCCAGCAGGTAGATGGGCA +
Preference number: 6 (lower is better)
Translates to: THRARGSPARVQ*RRQQSPAGRWA
Trigger: TGCCCATCTACCTGCTGGACTTTGCTGTCTTCTTCATTGCACCCTTGCTGGGGACCCTCGTGCTCTATGGGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044123.2
CDS TCA 72 bp CCTGGGACAATGGGCTCTGAAATAAGATCCTTCCAATaGACCCATAGAGCACGAGGGTCCCCAGCAAGGGTG +
Preference number: 6 (lower is better)
Translates to: PGTMGSEIRSFQ*THRARGSPARV
Trigger: CACCCTTGCTGGGGACCCTCGTGCTCTATGGGTTCATTGGAAGGATCTTATTTCAGAGCCCATTGTCCCAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044123.2
CDS GCA 72 bp AATGAACCCATAGAGCACGAGGGTCCCCAGCAAGGGTaGAATGAAGAAGACAGCAAAGTCCAGCAGGTAGAT +
Preference number: 6 (lower is better)
Translates to: NEPIEHEGPQQG*NEEDSKVQQVD
Trigger: ATCTACCTGCTGGACTTTGCTGTCTTCTTCATTGCACCCTTGCTGGGGACCCTCGTGCTCTATGGGTTCATT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044123.2
CDS TCA 72 bp TGTAGCCACATTCCAGGCGCTGGTTGTCACGGACATTaGGGTCCACCAGAAAGAACCAGAGTAAGCAATAGA +
Preference number: 6 (lower is better)
Translates to: CSHIPGAGCHGH*GPPERTRVSNR
Trigger: TCTATTGCTTACTCTGGTTCTTTCTGGTGGACCTCAATGTCCGTGACAACCAGCGCCTGGAATGTGGCTACA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044123.2