Pregenerated sensors for TRH (Mus musculus)
Ensembl gene IDs: ENSMUSG00000005892Ensembl transcript IDs: ENSMUST00000006046.5
Found 53 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | GTCTTGGCCAGTGTGGAAGGGGTGAGAGACTGTGGGGCTGTCAGAGAAGAGGGGAGGGAGGGGTTTGGGTaGATGCTATGTACAGAGGGC | + |
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Preference number: 2 (lower is better) Translates to: VLASVEGVRDCGAVREEGREGFG*MLCTEG Trigger: GCCCTCTGTACATAGCATCCACCCAAACCCCTCCCT...CCCCTCTTCTCTGACAGCCCCACAGTCTCTCACCCCTTCCACACTGGCCAAGAC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000006046.5 |
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| 3UTR-3UTR CAA 90 bp | GGAAGAACCGTCTTGGCCAGTGTGGAAGGGGTGAGAGACTGTGGGGCTGTCAGAGGGGCCCCCACCTCCTaGCTTGAAGGGATAAGTAGG | + |
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Preference number: 3 (lower is better) Translates to: GRTVLASVEGVRDCGAVRGAPTS*LEGISR Trigger: CCTACTTATCCCTTCAAGCAAGGAGGTGGGGGCCCC...TCTGACAGCCCCACAGTCTCTCACCCCTTCCACACTGGCCAAGACGGTTCTTCC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000006046.5 |
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| 3UTR CCA 72 bp | CTCTTTGAAGTTCCTGAAGTGGGTAAGGGAGGGGTTTaGGTGGATGCTATGTACAGAGGGCCCAGGGTTAGC | + |
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Preference number: 3 (lower is better) Translates to: LFEVPEVGKGGV*VDAMYRGPRVS Trigger: GCTAACCCTGGGCCCTCTGTACATAGCATCCACCCAAACCCCTCCCTTACCCACTTCAGGAACTTCAAAGAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006046.5 |
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| 3UTR TCA 72 bp | GATTTTAACACCCAAACTTTTCAATCCTACCCTTTCTaGGGAGGTCCCTTAGGAGGCGTGGAAGAACCGTCT | + |
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Preference number: 3 (lower is better) Translates to: DFNTQTFQSYPF*GGPLGGVEEPS Trigger: AGACGGTTCTTCCACGCCTCCTAAGGGACCTCCTCAGAAAGGGTAGGATTGAAAAGTTTGGGTGTTAAAATC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000006046.5 |
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| 3UTR CCA 72 bp | TTTAACTTCCTGATTGGCTCTTTGAAGTTCCTGAAGTaGGTAAGGGAGGGGTTTGGGTGGATGCTATGTACA | + |
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Preference number: 3 (lower is better) Translates to: FNFLIGSLKFLK*VREGFGWMLCT Trigger: TGTACATAGCATCCACCCAAACCCCTCCCTTACCCACTTCAGGAACTTCAAAGAGCCAATCAGGAAGTTAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006046.5 |
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| CDS-3UTR GCA 90 bp | CGTGGAAGAACCGTCTTGGCCAGTGTGGAAGGGGTGAGAGACTGTGGGGCTGTCGCACGTCGGCCAGGGTaGTGTCGTTTGTGGGGTCTC | + |
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Preference number: 4 (lower is better) Translates to: RGRTVLASVEGVRDCGAVARRPG*CRLWGL Trigger: GAGACCCCACAAACGACAGCACCCTGGCCGACGTGC...GACAGCCCCACAGTCTCTCACCCCTTCCACACTGGCCAAGACGGTTCTTCCACG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000006046.5 |
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| CDS-3UTR GCA 90 bp | CGTGGAAGAACCGTCTTGGCCAGTGTGGAAGGGGTGAGAGACTGTGGGGCTGTCACCTTCCTCCTGGGCTaGTTCCAGCAAGGCGCAGGA | + |
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Preference number: 4 (lower is better) Translates to: RGRTVLASVEGVRDCGAVTFLLG*FQQGAG Trigger: TCCTGCGCCTTGCTGGAAGCAGCCCAGGAGGAAGGT...GACAGCCCCACAGTCTCTCACCCCTTCCACACTGGCCAAGACGGTTCTTCCACG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000006046.5 |
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| CDS-3UTR CCA 90 bp | CGTGGAAGAACCGTCTTGGCCAGTGTGGAAGGGGTGAGAGACTGTGGGGCTGTCGGGTGCTGTCGTTTGTaGGGTCTCCAGGCTCCCACT | + |
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Preference number: 4 (lower is better) Translates to: RGRTVLASVEGVRDCGAVGCCRL*GLQAPT Trigger: AGTGGGAGCCTGGAGACCCCACAAACGACAGCACCC...GACAGCCCCACAGTCTCTCACCCCTTCCACACTGGCCAAGACGGTTCTTCCACG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000006046.5 |
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| 3UTR CAA 72 bp | CTGAGGAGGTCCCTTAGGAGGCGTGGAAGAACCGTCTaGGCCAGTGTGGAAGGGGTGAGAGACTGTGGGGCT | + |
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Preference number: 4 (lower is better) Translates to: LRRSLRRRGRTV*ASVEGVRDCGA Trigger: AGCCCCACAGTCTCTCACCCCTTCCACACTGGCCAAGACGGTTCTTCCACGCCTCCTAAGGGACCTCCTCAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000006046.5 |
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| CDS-3UTR TCA 90 bp | GGAAGAACCGTCTTGGCCAGTGTGGAAGGGGTGAGAGACTGTGGGGCTGTCAGACCTCCAGAGGTTCCCTaGCCCAGGCTTCCAGTTGTG | + |
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Preference number: 4 (lower is better) Translates to: GRTVLASVEGVRDCGAVRPPEVP*PRLPVV Trigger: CACAACTGGAAGCCTGGGTCAGGGAACCTCTGGAGG...TCTGACAGCCCCACAGTCTCTCACCCCTTCCACACTGGCCAAGACGGTTCTTCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000006046.5 |
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| CDS-3UTR GCA 90 bp | CGTGGAAGAACCGTCTTGGCCAGTGTGGAAGGGGTGAGAGACTGTGGGGCTGTCCTCCGGCCTGGATGCTaGCTCTTGGTGACATCAGAC | + |
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Preference number: 4 (lower is better) Translates to: RGRTVLASVEGVRDCGAVLRPGC*LLVTSD Trigger: GTCTGATGTCACCAAGAGGCAGCATCCAGGCCGGAG...GACAGCCCCACAGTCTCTCACCCCTTCCACACTGGCCAAGACGGTTCTTCCACG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000006046.5 |
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| CDS-3UTR TCA 90 bp | GTCTTGGCCAGTGTGGAAGGGGTGAGAGACTGTGGGGCTGTCAGAGAAGAGGGGGATGCTGCCTCTTGGTaGCATCAGACTCCATCCAGG | + |
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Preference number: 4 (lower is better) Translates to: VLASVEGVRDCGAVREEGDAASW*HQTPSR Trigger: CCTGGATGGAGTCTGATGTCACCAAGAGGCAGCATC...CCCCTCTTCTCTGACAGCCCCACAGTCTCTCACCCCTTCCACACTGGCCAAGAC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000006046.5 |
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| CDS-3UTR GCA 90 bp | GTCTTGGCCAGTGTGGAAGGGGTGAGAGACTGTGGGGCTGTCAGAGAAGAGGGGAACCTCCGGCCTGGATaGTGCCTCTTGGTGACATCA | + |
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Preference number: 4 (lower is better) Translates to: VLASVEGVRDCGAVREEGNLRPG*CLLVTS Trigger: TGATGTCACCAAGAGGCAGCATCCAGGCCGGAGGTT...CCCCTCTTCTCTGACAGCCCCACAGTCTCTCACCCCTTCCACACTGGCCAAGAC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000006046.5 |
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| CDS-3UTR GCA 90 bp | CGTGGAAGAACCGTCTTGGCCAGTGTGGAAGGGGTGAGAGACTGTGGGGCTGTCACAAGGGTGACCCACTaGCCTTTTGCCAGGATGCTG | + |
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Preference number: 4 (lower is better) Translates to: RGRTVLASVEGVRDCGAVTRVTH*PFARML Trigger: CAGCATCCTGGCAAAAGGGCAGTGGGTCACCCTTGT...GACAGCCCCACAGTCTCTCACCCCTTCCACACTGGCCAAGACGGTTCTTCCACG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000006046.5 |
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| CDS-3UTR CCA 90 bp | CGTGGAAGAACCGTCTTGGCCAGTGTGGAAGGGGTGAGAGACTGTGGGGCTGTCCCAGGCTTCCAGTTGTaGGGTTTGCTTTGCCAGGGT | + |
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Preference number: 4 (lower is better) Translates to: RGRTVLASVEGVRDCGAVPGFQL*GLLCQG Trigger: ACCCTGGCAAAGCAAACCCCACAACTGGAAGCCTGG...GACAGCCCCACAGTCTCTCACCCCTTCCACACTGGCCAAGACGGTTCTTCCACG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000006046.5 |
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| CDS-3UTR CCA 90 bp | GGAAGAACCGTCTTGGCCAGTGTGGAAGGGGTGAGAGACTGTGGGGCTGTCAGAAGGTCACCTAGAAGCTaGAGCAGGCCTGTTTGGCCA | + |
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Preference number: 4 (lower is better) Translates to: GRTVLASVEGVRDCGAVRRSPRS*SRPVWP Trigger: TGGCCAAACAGGCCTGCTCCAGCTTCTAGGTGACCT...TCTGACAGCCCCACAGTCTCTCACCCCTTCCACACTGGCCAAGACGGTTCTTCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000006046.5 |
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| CDS-3UTR TCA 90 bp | TCTTTGAAGTTCCTGAAGTGGGTAAGGGAGGGGTTTGGGTGGATGCTATGTACATGGGGCCCACAAGGGTaGCCCACTGCCCTTTTGCCA | + |
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Preference number: 4 (lower is better) Translates to: SLKFLKWVREGFGWMLCTWGPQG*PTALLP Trigger: TGGCAAAAGGGCAGTGGGTCACCCTTGTGGGCCCCA...TGTACATAGCATCCACCCAAACCCCTCCCTTACCCACTTCAGGAACTTCAAAGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000006046.5 |
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| CDS-3UTR CCA 90 bp | GGCTCTTTGAAGTTCCTGAAGTGGGTAAGGGAGGGGTTTGGGTGGATGCTATGTTTTGCCAGGGTCTCCTaGCCCCTACTCAGGTCACCT | + |
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Preference number: 4 (lower is better) Translates to: GSLKFLKWVREGFGWMLCFARVS*PLLRSP Trigger: AGGTGACCTGAGTAGGGGCCAGGAGACCCTGGCAAA...ACATAGCATCCACCCAAACCCCTCCCTTACCCACTTCAGGAACTTCAAAGAGCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000006046.5 |
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| CDS-3UTR CCA 90 bp | GGCTCTTTGAAGTTCCTGAAGTGGGTAAGGGAGGGGTTTGGGTGGATGCTATGTGACTTTCTCCAGGCCTaGAAGGTCAGGAGTCACAGC | + |
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Preference number: 4 (lower is better) Translates to: GSLKFLKWVREGFGWMLCDFLQA*KVRSHS Trigger: GCTGTGACTCCTGACCTTCCAGGCCTGGAGAAAGTC...ACATAGCATCCACCCAAACCCCTCCCTTACCCACTTCAGGAACTTCAAAGAGCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006046.5 |
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| CDS-3UTR TCA 90 bp | ATTGGCTCTTTGAAGTTCCTGAAGTGGGTAAGGGAGGGGTTTGGGTGGATGCTAGATGCTGGCGTTTTGTaGTCCAGGAATCTAAGGCAG | + |
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Preference number: 4 (lower is better) Translates to: IGSLKFLKWVREGFGWMLDAGVL*SRNLRQ Trigger: CTGCCTTAGATTCCTGGATCACAAAACGCCAGCATC...TAGCATCCACCCAAACCCCTCCCTTACCCACTTCAGGAACTTCAAAGAGCCAAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000006046.5 |
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| CDS-3UTR CCA 90 bp | TCAGTCTTGCCATATGGGGCAGATGACAGAAGTTGGATTTTAACACCCAAACTTACAGCACCTTCCTCCTaGGCTGCTTCCAGCAAGGCG | + |
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Preference number: 4 (lower is better) Translates to: SVLPYGADDRSWILTPKLTAPSS*AASSKA Trigger: CGCCTTGCTGGAAGCAGCCCAGGAGGAAGGTGCTGT...AAGTTTGGGTGTTAAAATCCAACTTCTGTCATCTGCCCCATATGGCAAGACTGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000006046.5 |
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| CDS-3UTR CCA 90 bp | TCAGTCTTGCCATATGGGGCAGATGACAGAAGTTGGATTTTAACACCCAAACTTCGTTCTGGCCGGACCTaGACTTTCTCCAGGCCTGGA | + |
|
Preference number: 4 (lower is better) Translates to: SVLPYGADDRSWILTPKLRSGRT*TFSRPG Trigger: TCCAGGCCTGGAGAAAGTCCAGGTCCGGCCAGAACG...AAGTTTGGGTGTTAAAATCCAACTTCTGTCATCTGCCCCATATGGCAAGACTGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000006046.5 |
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| CDS-3UTR CCA 90 bp | ATTGGCTCTTTGAAGTTCCTGAAGTGGGTAAGGGAGGGGTTTGGGTGGATGCTACTTTTGCCCGGATGCTaGCGTTTTGTGATCCAGGAA | + |
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Preference number: 4 (lower is better) Translates to: IGSLKFLKWVREGFGWMLLLPGC*RFVIQE Trigger: TTCCTGGATCACAAAACGCCAGCATCCGGGCAAAAG...TAGCATCCACCCAAACCCCTCCCTTACCCACTTCAGGAACTTCAAAGAGCCAAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000006046.5 |
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| CDS-3UTR CCA 90 bp | TCAGTCTTGCCATATGGGGCAGATGACAGAAGTTGGATTTTAACACCCAAACTTTGGAGCAGGCCTGTTTaGCCACAAATCCCCTGGGGC | + |
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Preference number: 4 (lower is better) Translates to: SVLPYGADDRSWILTPKLWSRPV*PQIPWG Trigger: GCCCCAGGGGATTTGTGGCCAAACAGGCCTGCTCCA...AAGTTTGGGTGTTAAAATCCAACTTCTGTCATCTGCCCCATATGGCAAGACTGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000006046.5 |
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| CDS-3UTR CCA 90 bp | GATTGGCTCTTTGAAGTTCCTGAAGTGGGTAAGGGAGGGGTTTGGGTGGATGCTTCTTCCCAGCTTCTTTaGAGCTCAGGATCTATGAAC | + |
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Preference number: 4 (lower is better) Translates to: DWLFEVPEVGKGGVWVDASSQLL*SSGSMN Trigger: GTTCATAGATCCTGAGCTCCAAAGAAGCTGGGAAGA...AGCATCCACCCAAACCCCTCCCTTACCCACTTCAGGAACTTCAAAGAGCCAATC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006046.5 |
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| CDS-3UTR CAA 90 bp | CGTGGAAGAACCGTCTTGGCCAGTGTGGAAGGGGTGAGAGACTGTGGGGCTGTCCCAGGGTGCTGTCGTTaGTGGGGTCTCCAGGCTCCC | + |
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Preference number: 5 (lower is better) Translates to: RGRTVLASVEGVRDCGAVPGCCR*WGLQAP Trigger: GGGAGCCTGGAGACCCCACAAACGACAGCACCCTGG...GACAGCCCCACAGTCTCTCACCCCTTCCACACTGGCCAAGACGGTTCTTCCACG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000006046.5 |
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| CDS CCA 90 bp | CCTCAAGAATCGACGTTCTGGCCGGACCTGGACTTTCTCCAGGCCTaGAAGGTCAGGAGTCACAGCACCTTCCTCCTGGGCTGCTTCCAG | + |
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Preference number: 5 (lower is better) Translates to: PQESTFWPDLDFLQA*KVRSHSTFLLGCFQ Trigger: CTGGAAGCAGCCCAGGAGGAAGGTGCTGTGACTCCTGACCTTCCAGGCCTGGAGAAAGTCCAGGTCCGGCCAGAACGTCGATTCTTGAGG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006046.5 |
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| CDS CCA 90 bp | CTGACCCAGGCTTCCAGTTGTGGGGTTTGCTTTGCCAGGGTCTCCTaGCCCCTACTCAGGTCACCTAGAAGCTGGAGCAGGCCTGTTTGG | + |
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Preference number: 5 (lower is better) Translates to: LTQASSCGVCFARVS*PLLRSPRSWSRPVW Trigger: CCAAACAGGCCTGCTCCAGCTTCTAGGTGACCTGAGTAGGGGCCAGGAGACCCTGGCAAAGCAAACCCCACAACTGGAAGCCTGGGTCAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000006046.5 |
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| CDS CCA 90 bp | ACTTTCTCCAGGCCTGGAAGGTCAGGAGTCACAGCACCTTCCTCCTaGGCTGCTTCCAGCAAGGCGCAGGATTTGGGGATACCAGTTAGC | + |
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Preference number: 5 (lower is better) Translates to: TFSRPGRSGVTAPSS*AASSKAQDLGIPVS Trigger: GCTAACTGGTATCCCCAAATCCTGCGCCTTGCTGGAAGCAGCCCAGGAGGAAGGTGCTGTGACTCCTGACCTTCCAGGCCTGGAGAAAGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006046.5 |
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| CDS GCA 90 bp | CAGCTTCTTTGGAGCTCAGGATCTATGAACCTCCGGCCTGGATGCTaGCTCTTGGTGACATCAGACTCCATCCAGGGGAAGGATCGCCTG | + |
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Preference number: 5 (lower is better) Translates to: QLLWSSGSMNLRPGC*LLVTSDSIQGKDRL Trigger: CAGGCGATCCTTCCCCTGGATGGAGTCTGATGTCACCAAGAGGCAGCATCCAGGCCGGAGGTTCATAGATCCTGAGCTCCAAAGAAGCTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006046.5 |
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| CDS GCA 90 bp | TCATCTGACCATGAATCCTTGTCTTGGTTGGCACGTCGGCCAGGGTaGTGTCGTTTGTGGGGTCTCCAGGCTCCCACTTCTCCCAAATCT | + |
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Preference number: 5 (lower is better) Translates to: SSDHESLSWLARRPG*CRLWGLQAPTSPKS Trigger: AGATTTGGGAGAAGTGGGAGCCTGGAGACCCCACAAACGACAGCACCCTGGCCGACGTGCCAACCAAGACAAGGATTCATGGTCAGATGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006046.5 |
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| CDS CCA 90 bp | GGCATTAAGCCACCCTCCTCTCCCTCTGTTTCTTCCCAGCTTCTTTaGAGCTCAGGATCTATGAACCTCCGGCCTGGATGCTGCCTCTTG | + |
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Preference number: 5 (lower is better) Translates to: GIKPPSSPSVSSQLL*SSGSMNLRPGCCLL Trigger: CAAGAGGCAGCATCCAGGCCGGAGGTTCATAGATCCTGAGCTCCAAAGAAGCTGGGAAGAAACAGAGGGAGAGGAGGGTGGCTTAATGCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006046.5 |
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| CDS GCA 90 bp | TCTTCGGCTTCAACGTCTTCCTCCTTCTCCTCCCTTTTGCCCGGATaGTGGCGTTTTGTGATCCAGGAATCTAAGGCAGCACCAAGGTCC | + |
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Preference number: 5 (lower is better) Translates to: SSASTSSSFSSLLPG*WRFVIQESKAAPRS Trigger: GGACCTTGGTGCTGCCTTAGATTCCTGGATCACAAAACGCCAGCATCCGGGCAAAAGGGAGGAGAAGGAGGAAGACGTTGAAGCCGAAGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000006046.5 |
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| CDS CCA 90 bp | TTCTTCCCAGCTTCTTTGGAGCTCAGGATCTATGAACCTCCGGCCTaGATGCTGCCTCTTGGTGACATCAGACTCCATCCAGGGGAAGGA | + |
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Preference number: 5 (lower is better) Translates to: FFPASLELRIYEPPA*MLPLGDIRLHPGEG Trigger: TCCTTCCCCTGGATGGAGTCTGATGTCACCAAGAGGCAGCATCCAGGCCGGAGGTTCATAGATCCTGAGCTCCAAAGAAGCTGGGAAGAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006046.5 |
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| CDS-3UTR CAA 90 bp | TCTTTGAAGTTCCTGAAGTGGGTAAGGGAGGGGTTTGGGTGGATGCTATGTACATTCCAGTTGTGGGGTTaGCTTTGCCAGGGTCTCCTG | + |
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Preference number: 5 (lower is better) Translates to: SLKFLKWVREGFGWMLCTFQLWG*LCQGLL Trigger: CAGGAGACCCTGGCAAAGCAAACCCCACAACTGGAA...TGTACATAGCATCCACCCAAACCCCTCCCTTACCCACTTCAGGAACTTCAAAGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000006046.5 |
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| CDS-3UTR CAA 90 bp | TCAGTCTTGCCATATGGGGCAGATGACAGAAGTTGGATTTTAACACCCAAACTTTCCTTCTCCTCCCTTTaGCCCGGATGCTGGCGTTTT | + |
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Preference number: 5 (lower is better) Translates to: SVLPYGADDRSWILTPKLSFSSL*PGCWRF Trigger: AAAACGCCAGCATCCGGGCAAAAGGGAGGAGAAGGA...AAGTTTGGGTGTTAAAATCCAACTTCTGTCATCTGCCCCATATGGCAAGACTGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000006046.5 |
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| CDS-3UTR CAA 90 bp | ATTGGCTCTTTGAAGTTCCTGAAGTGGGTAAGGGAGGGGTTTGGGTGGATGCTATTCTTCCCAGCTTCTTaGGAGCTCAGGATCTATGAA | + |
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Preference number: 5 (lower is better) Translates to: IGSLKFLKWVREGFGWMLFFPAS*ELRIYE Trigger: TTCATAGATCCTGAGCTCCAAAGAAGCTGGGAAGAA...TAGCATCCACCCAAACCCCTCCCTTACCCACTTCAGGAACTTCAAAGAGCCAAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006046.5 |
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| CDS CAA 72 bp | CAGAGGTTCCCTGACCCAGGCTTCCAGTTGTGGGGTTaGCTTTGCCAGGGTCTCCTGGCCCCTACTCAGGTC | + |
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Preference number: 6 (lower is better) Translates to: QRFPDPGFQLWG*LCQGLLAPTQV Trigger: GACCTGAGTAGGGGCCAGGAGACCCTGGCAAAGCAAACCCCACAACTGGAAGCCTGGGTCAGGGAACCTCTG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000006046.5 |
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| CDS GCA 72 bp | AGAGGTTCCCTGACCCAGGCTTCCAGTTGTGGGGTTTaGTTTGCCAGGGTCTCCTGGCCCCTACTCAGGTCA | + |
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Preference number: 6 (lower is better) Translates to: RGSLTQASSCGV*FARVSWPLLRS Trigger: TGACCTGAGTAGGGGCCAGGAGACCCTGGCAAAGCAAACCCCACAACTGGAAGCCTGGGTCAGGGAACCTCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000006046.5 |
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| CDS CCA 72 bp | AGGCCTGGAAGGTCAGGAGTCACAGCACCTTCCTCCTaGGCTGCTTCCAGCAAGGCGCAGGATTTGGGGATA | + |
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Preference number: 6 (lower is better) Translates to: RPGRSGVTAPSS*AASSKAQDLGI Trigger: TATCCCCAAATCCTGCGCCTTGCTGGAAGCAGCCCAGGAGGAAGGTGCTGTGACTCCTGACCTTCCAGGCCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006046.5 |
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| CDS CCA 72 bp | GCTTCCAGTTGTGGGGTTTGCTTTGCCAGGGTCTCCTaGCCCCTACTCAGGTCACCTAGAAGCTGGAGCAGG | + |
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Preference number: 6 (lower is better) Translates to: ASSCGVCFARVS*PLLRSPRSWSR Trigger: CCTGCTCCAGCTTCTAGGTGACCTGAGTAGGGGCCAGGAGACCCTGGCAAAGCAAACCCCACAACTGGAAGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000006046.5 |
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| CDS CAA 90 bp | CTTTGGAGCTCAGGATCTATGAACCTCCGGCCTGGATGCTGCCTCTaGGTGACATCAGACTCCATCCAGGGGAAGGATCGCCTGCCAGGG | + |
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Preference number: 6 (lower is better) Translates to: LWSSGSMNLRPGCCL*VTSDSIQGKDRLPG Trigger: CCCTGGCAGGCGATCCTTCCCCTGGATGGAGTCTGATGTCACCAAGAGGCAGCATCCAGGCCGGAGGTTCATAGATCCTGAGCTCCAAAG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006046.5 |
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| CDS CCA 72 bp | CACACGCTGGAGGTCTTTCCTCAAGAATCGACGTTCTaGCCGGACCTGGACTTTCTCCAGGCCTGGAAGGTC | + |
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Preference number: 6 (lower is better) Translates to: HTLEVFPQESTF*PDLDFLQAWKV Trigger: GACCTTCCAGGCCTGGAGAAAGTCCAGGTCCGGCCAGAACGTCGATTCTTGAGGAAAGACCTCCAGCGTGTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006046.5 |
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| CDS CCA 72 bp | TGTCCCCCTCATCTGACCATGAATCCTTGTCTTGGTTaGCACGTCGGCCAGGGTGCTGTCGTTTGTGGGGTC | + |
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Preference number: 6 (lower is better) Translates to: CPPHLTMNPCLG*HVGQGAVVCGV Trigger: GACCCCACAAACGACAGCACCCTGGCCGACGTGCCAACCAAGACAAGGATTCATGGTCAGATGAGGGGGACA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000006046.5 |
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| CDS CAA 72 bp | CTGTCCCCCTCATCTGACCATGAATCCTTGTCTTGGTaGGCACGTCGGCCAGGGTGCTGTCGTTTGTGGGGT | + |
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Preference number: 6 (lower is better) Translates to: LSPSSDHESLSW*ARRPGCCRLWG Trigger: ACCCCACAAACGACAGCACCCTGGCCGACGTGCCAACCAAGACAAGGATTCATGGTCAGATGAGGGGGACAG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000006046.5 |
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| CDS GCA 72 bp | TGGAGCTCAGGATCTATGAACCTCCGGCCTGGATGCTaGCTCTTGGTGACATCAGACTCCATCCAGGGGAAG | + |
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Preference number: 6 (lower is better) Translates to: WSSGSMNLRPGC*LLVTSDSIQGK Trigger: CTTCCCCTGGATGGAGTCTGATGTCACCAAGAGGCAGCATCCAGGCCGGAGGTTCATAGATCCTGAGCTCCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006046.5 |
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| CDS GCA 72 bp | CTTTGGAGCTCAGGATCTATGAACCTCCGGCCTGGATaGTGCCTCTTGGTGACATCAGACTCCATCCAGGGG | + |
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Preference number: 6 (lower is better) Translates to: LWSSGSMNLRPG*CLLVTSDSIQG Trigger: CCCCTGGATGGAGTCTGATGTCACCAAGAGGCAGCATCCAGGCCGGAGGTTCATAGATCCTGAGCTCCAAAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006046.5 |
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| CDS CCA 72 bp | TCACTGTCCCCCTCATCTGACCATGAATCCTTGTCTTaGTTGGCACGTCGGCCAGGGTGCTGTCGTTTGTGG | + |
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Preference number: 6 (lower is better) Translates to: SLSPSSDHESLS*LARRPGCCRLW Trigger: CCACAAACGACAGCACCCTGGCCGACGTGCCAACCAAGACAAGGATTCATGGTCAGATGAGGGGGACAGTGA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000006046.5 |
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| CDS CAA 72 bp | TCAGGATCTATGAACCTCCGGCCTGGATGCTGCCTCTaGGTGACATCAGACTCCATCCAGGGGAAGGATCGC | + |
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Preference number: 6 (lower is better) Translates to: SGSMNLRPGCCL*VTSDSIQGKDR Trigger: GCGATCCTTCCCCTGGATGGAGTCTGATGTCACCAAGAGGCAGCATCCAGGCCGGAGGTTCATAGATCCTGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006046.5 |
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| CDS CCA 72 bp | AGGTCTTTCCTCAAGAATCGACGTTCTGGCCGGACCTaGACTTTCTCCAGGCCTGGAAGGTCAGGAGTCACA | + |
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Preference number: 6 (lower is better) Translates to: RSFLKNRRSGRT*TFSRPGRSGVT Trigger: TGTGACTCCTGACCTTCCAGGCCTGGAGAAAGTCCAGGTCCGGCCAGAACGTCGATTCTTGAGGAAAGACCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006046.5 |
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| CDS CCA 72 bp | ACGTCTTCCTCCTTCTCCTCCCTTTTGCCCGGATGCTaGCGTTTTGTGATCCAGGAATCTAAGGCAGCACCA | + |
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Preference number: 6 (lower is better) Translates to: TSSSFSSLLPGC*RFVIQESKAAP Trigger: TGGTGCTGCCTTAGATTCCTGGATCACAAAACGCCAGCATCCGGGCAAAAGGGAGGAGAAGGAGGAAGACGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000006046.5 |
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| CDS CCA 72 bp | GCTTCTTTGGAGCTCAGGATCTATGAACCTCCGGCCTaGATGCTGCCTCTTGGTGACATCAGACTCCATCCA | + |
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Preference number: 6 (lower is better) Translates to: ASLELRIYEPPA*MLPLGDIRLHP Trigger: TGGATGGAGTCTGATGTCACCAAGAGGCAGCATCCAGGCCGGAGGTTCATAGATCCTGAGCTCCAAAGAAGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006046.5 |
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| CDS GCA 72 bp | TCAACGTCTTCCTCCTTCTCCTCCCTTTTGCCCGGATaGTGGCGTTTTGTGATCCAGGAATCTAAGGCAGCA | + |
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Preference number: 6 (lower is better) Translates to: STSSSFSSLLPG*WRFVIQESKAA Trigger: TGCTGCCTTAGATTCCTGGATCACAAAACGCCAGCATCCGGGCAAAAGGGAGGAGAAGGAGGAAGACGTTGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000006046.5 |
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