Pregenerated sensors for TRGV6 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000076746

Ensembl transcript IDs: ENSMUST00000103555.3, ENSMUST00000198330.2

Found 8 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS TCA 90 bp	ATAAGTTCCCGTGTCCTCTTCTGTCACTTGGTGTATGGTGAGGACTaGAGACAAATCACTCTGCCATGTCCTTGCCTCATATCTTTCGTC	+
Preference number: 5 (lower is better) Translates to: ISSRVLFCHLVYGED*RQITLPCPCLISFV Trigger: GACGAAAGATATGAGGCAAGGACATGGCAGAGTGATTTGTCTTCAGTCCTCACCATACACCAAGTGACAGAAGAGGACACGGGAACTTAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000103555.3 ENSMUST00000198330.2
CDS TCA 90 bp	CACAGTAATAAGTTCCCGTGTCCTCTTCTGTCACTTGGTGTATGGTaGGGACTGAAGACAAATCACTCTGCCATGTCCTTGCCTCATATC	+
Preference number: 5 (lower is better) Translates to: HSNKFPCPLLSLGVW*GLKTNHSAMSLPHI Trigger: GATATGAGGCAAGGACATGGCAGAGTGATTTGTCTTCAGTCCTCACCATACACCAAGTGACAGAAGAGGACACGGGAACTTATTACTGTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000103555.3 ENSMUST00000198330.2
CDS CCA 90 bp	ACAATGTTTTCTTTTGAAGAACTACACAGCATTCTTTGGAGACGCTaGCCTGGCTTCTCTTGGTACCAGTGTATGTATGCATCGGGCTTC	+
Preference number: 5 (lower is better) Translates to: TMFSFEELHSILWRR*PGFSWYQCMYASGF Trigger: GAAGCCCGATGCATACATACACTGGTACCAAGAGAAGCCAGGCCAGCGTCTCCAAAGAATGCTGTGTAGTTCTTCAAAAGAAAACATTGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000103555.3 ENSMUST00000198330.2
CDS GCA 90 bp	TCTTCTGTCACTTGGTGTATGGTGAGGACTGAAGACAAATCACTCTaGCATGTCCTTGCCTCATATCTTTCGTCACTAAAATCTTTCTCA	+
Preference number: 5 (lower is better) Translates to: SSVTWCMVRTEDKSL*HVLASYLSSLKSFS Trigger: TGAGAAAGATTTTAGTGACGAAAGATATGAGGCAAGGACATGGCAGAGTGATTTGTCTTCAGTCCTCACCATACACCAAGTGACAGAAGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000103555.3 ENSMUST00000198330.2
CDS TCA 72 bp	CGTGTCCTCTTCTGTCACTTGGTGTATGGTGAGGACTaGAGACAAATCACTCTGCCATGTCCTTGCCTCATA	+
Preference number: 6 (lower is better) Translates to: RVLFCHLVYGED*RQITLPCPCLI Trigger: TATGAGGCAAGGACATGGCAGAGTGATTTGTCTTCAGTCCTCACCATACACCAAGTGACAGAAGAGGACACG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000103555.3 ENSMUST00000198330.2
CDS TCA 72 bp	AAGTTCCCGTGTCCTCTTCTGTCACTTGGTGTATGGTaGGGACTGAAGACAAATCACTCTGCCATGTCCTTG	+
Preference number: 6 (lower is better) Translates to: KFPCPLLSLGVW*GLKTNHSAMSL Trigger: CAAGGACATGGCAGAGTGATTTGTCTTCAGTCCTCACCATACACCAAGTGACAGAAGAGGACACGGGAACTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000103555.3 ENSMUST00000198330.2
CDS GCA 72 bp	ACTTGGTGTATGGTGAGGACTGAAGACAAATCACTCTaGCATGTCCTTGCCTCATATCTTTCGTCACTAAAA	+
Preference number: 6 (lower is better) Translates to: TWCMVRTEDKSL*HVLASYLSSLK Trigger: TTTTAGTGACGAAAGATATGAGGCAAGGACATGGCAGAGTGATTTGTCTTCAGTCCTCACCATACACCAAGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000103555.3 ENSMUST00000198330.2
CDS CAA 90 bp	GTACCAGTGTATGTATGCATCGGGCTTCTGAACACTTGTTTTTATTaGACATTTGAGAAAAGCCGTATTTCCTTTCCTCTTGATGACATA	+
Preference number: 6 (lower is better) Translates to: VPVYVCIGLLNTCFY*TFEKSRISFPLDDI Trigger: TATGTCATCAAGAGGAAAGGAAATACGGCTTTTCTCAAATGTCAAATAAAAACAAGTGTTCAGAAGCCCGATGCATACATACACTGGTAC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000103555.3 ENSMUST00000198330.2

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