Pregenerated sensors for TRGV5 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000076747Ensembl transcript IDs: ENSMUST00000103556.3, ENSMUST00000199017.2
Found 4 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | AAGGGGAACCCCAGAGAGCTTGCAACTTATGTGCACCGTCTTGTTTaGTCTTCGGGTAAAGGAGAGCTGATCCTGAGATATCCAGGAGTC | + |
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Preference number: 5 (lower is better) Translates to: KGNPRELATYVHRLV*SSGKGELILRYPGV Trigger: GACTCCTGGATATCTCAGGATCAGCTCTCCTTTACCCGAAGACCAAACAAGACGGTGCACATAAGTTGCAAGCTCTCTGGGGTTCCCCTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000103556.3 ENSMUST00000199017.2 |
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| CDS GCA 72 bp | GCACAATGGTGTTATGAAGGGGAACCCCAGAGAGCTTaGAACTTATGTGCACCGTCTTGTTTGGTCTTCGGG | + |
|
Preference number: 6 (lower is better) Translates to: AQWCYEGEPQRA*NLCAPSCLVFG Trigger: CCCGAAGACCAAACAAGACGGTGCACATAAGTTGCAAGCTCTCTGGGGTTCCCCTTCATAACACCATTGTGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000103556.3 ENSMUST00000199017.2 |
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| CDS TCA 72 bp | CCTTCTTTCAGTTGGTACCAGTGCACAATGGTGTTATaGAGGGGAACCCCAGAGAGCTTGCAACTTATGTGC | + |
|
Preference number: 6 (lower is better) Translates to: PSFSWYQCTMVL*RGTPESLQLMC Trigger: GCACATAAGTTGCAAGCTCTCTGGGGTTCCCCTTCATAACACCATTGTGCACTGGTACCAACTGAAAGAAGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000103556.3 ENSMUST00000199017.2 |
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| CDS CCA 72 bp | CCCAGAGAGCTTGCAACTTATGTGCACCGTCTTGTTTaGTCTTCGGGTAAAGGAGAGCTGATCCTGAGATAT | + |
|
Preference number: 6 (lower is better) Translates to: PRELATYVHRLV*SSGKGELILRY Trigger: ATATCTCAGGATCAGCTCTCCTTTACCCGAAGACCAAACAAGACGGTGCACATAAGTTGCAAGCTCTCTGGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000103556.3 ENSMUST00000199017.2 |
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