Pregenerated sensors for TRGV4 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000076745

Ensembl transcript IDs: ENSMUST00000103554.5

Found 3 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS TCA 90 bp	GTTGCTCCAACTTCCCATGTCCAAATGTCAAGAGGCATAAGAAAATaGCTACTTTCAGGAGTGGATTCTCATCTGCCAGGTTGGCTTCCC	+
Preference number: 5 (lower is better) Translates to: VAPTSHVQMSRGIRK*LLSGVDSHLPGWLP Trigger: GGGAAGCCAACCTGGCAGATGAGAATCCACTCCTGAAAGTAGTCATTTTCTTATGCCTCTTGACATTTGGACATGGGAAGTTGGAGCAAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103554.5
CDS CAA 72 bp	ATGACTACTTTCAGGAGTGGATTCTCATCTGCCAGGTaGGCTTCCCAGGGAAGATATAAAGGAAGCAGGGCT	+
Preference number: 6 (lower is better) Translates to: MTTFRSGFSSAR*ASQGRYKGSRA Trigger: AGCCCTGCTTCCTTTATATCTTCCCTGGGAAGCCAACCTGGCAGATGAGAATCCACTCCTGAAAGTAGTCAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103554.5
CDS CAA 90 bp	CATAAGAAAATGACTACTTTCAGGAGTGGATTCTCATCTGCCAGGTaGGCTTCCCAGGGAAGATATAAAGGAAGCAGGGCTTGTGAGCCA	+
Preference number: 6 (lower is better) Translates to: HKKMTTFRSGFSSAR*ASQGRYKGSRACEP Trigger: TGGCTCACAAGCCCTGCTTCCTTTATATCTTCCCTGGGAAGCCAACCTGGCAGATGAGAATCCACTCCTGAAAGTAGTCATTTTCTTATG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103554.5

---

If you would like us to post a table for your organism of interest, or have questions, please reach out to eerik at stanford dot edu or xjgao at stanford.edu