Pregenerated sensors for TRGV3 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000076750

Ensembl transcript IDs: ENSMUST00000103559.3, ENSMUST00000198663.5

Found 7 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS GCA 90 bp	ATTTGCGCACTCTCATCTGTTGCTCTGGTGACCGATAATTCAGTTTaGTCCAGCTGCCCAAGCCAAACCCAGAGGCAGCAGCAGGAGGTG	+
Preference number: 5 (lower is better) Translates to: ICALSSVALVTDNSV*SSCPSQTQRQQQEV Trigger: CACCTCCTGCTGCTGCCTCTGGGTTTGGCTTGGGCAGCTGGAGCAAACTGAATTATCGGTCACCAGAGCAACAGATGAGAGTGCGCAAAT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103559.3
CDS GCA 90 bp	ATTTGCGCACTCTCATCTGTTGCTCTGGTGACCGATAATTCAGTTTaGTCCAGCTGCCCAAGCCCAAAAACCCAGAGGCAGCAGCAGGAG	+
Preference number: 5 (lower is better) Translates to: ICALSSVALVTDNSV*SSCPSPKTQRQQQE Trigger: CTCCTGCTGCTGCCTCTGGGTTTTTGGGCTTGGGCAGCTGGAGCAAACTGAATTATCGGTCACCAGAGCAACAGATGAGAGTGCGCAAAT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000198663.5
CDS GCA 90 bp	CTCTCATCTGTTGCTCTGGTGACCGATAATTCAGTTTGCTCCAGCTaGCCAAGCCCAAAAACCCAGAGGCAGCAGCAGGAGGTGAACATT	+
Preference number: 5 (lower is better) Translates to: LSSVALVTDNSVCSS*PSPKTQRQQQEVNI Trigger: AATGTTCACCTCCTGCTGCTGCCTCTGGGTTTTTGGGCTTGGGCAGCTGGAGCAAACTGAATTATCGGTCACCAGAGCAACAGATGAGAG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000198663.5
CDS CCA 90 bp	ATTTGGTTTTTGCCGGTACCAATGTATAGCTGTGTTGGAGAAACATaGAAGAGAAACTATACAGGATATTTGCGCACTCTCATCTGTTGC	+
Preference number: 5 (lower is better) Translates to: IWFLPVPMYSCVGET*KRNYTGYLRTLICC Trigger: GCAACAGATGAGAGTGCGCAAATATCCTGTATAGTTTCTCTTCCATGTTTCTCCAACACAGCTATACATTGGTACCGGCAAAAACCAAAT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000103559.3 ENSMUST00000198663.5
CDS GCA 72 bp	GTTGCTCTGGTGACCGATAATTCAGTTTGCTCCAGCTaGCCAAGCCAAACCCAGAGGCAGCAGCAGGAGGTG	+
Preference number: 6 (lower is better) Translates to: VALVTDNSVCSS*PSQTQRQQQEV Trigger: CACCTCCTGCTGCTGCCTCTGGGTTTGGCTTGGGCAGCTGGAGCAAACTGAATTATCGGTCACCAGAGCAAC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103559.3
CDS GCA 72 bp	CTCTCATCTGTTGCTCTGGTGACCGATAATTCAGTTTaGTCCAGCTGCCCAAGCCAAACCCAGAGGCAGCAG	+
Preference number: 6 (lower is better) Translates to: LSSVALVTDNSV*SSCPSQTQRQQ Trigger: CTGCTGCCTCTGGGTTTGGCTTGGGCAGCTGGAGCAAACTGAATTATCGGTCACCAGAGCAACAGATGAGAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103559.3
CDS GCA 72 bp	CTCTCATCTGTTGCTCTGGTGACCGATAATTCAGTTTaGTCCAGCTGCCCAAGCCCAAAAACCCAGAGGCAG	+
Preference number: 6 (lower is better) Translates to: LSSVALVTDNSV*SSCPSPKTQRQ Trigger: CTGCCTCTGGGTTTTTGGGCTTGGGCAGCTGGAGCAAACTGAATTATCGGTCACCAGAGCAACAGATGAGAG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000198663.5

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