Pregenerated sensors for TRGV1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000076755Ensembl transcript IDs: ENSMUST00000103564.3
Found 5 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | ATTTGCGCACTCTCATCTGTCTCTCTGGTGACCGATAATTCAGTTTaGTCCAGCTGCCCAAGCCCAAAAACCCAGAGGCAGCAGAAGGTG | + |
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Preference number: 5 (lower is better) Translates to: ICALSSVSLVTDNSV*SSCPSPKTQRQQKV Trigger: CACCTTCTGCTGCCTCTGGGTTTTTGGGCTTGGGCAGCTGGAGCAAACTGAATTATCGGTCACCAGAGAGACAGATGAGAGTGCGCAAAT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000103564.3 |
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| CDS GCA 90 bp | ATAGCTGTGTTGGAGAAATATGGAAGAGAAACTATACAGGATATTTaGGCACTCTCATCTGTCTCTCTGGTGACCGATAATTCAGTTTGC | + |
|
Preference number: 5 (lower is better) Translates to: IAVLEKYGRETIQDI*ALSSVSLVTDNSVC Trigger: GCAAACTGAATTATCGGTCACCAGAGAGACAGATGAGAGTGCGCAAATATCCTGTATAGTTTCTCTTCCATATTTCTCCAACACAGCTAT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103564.3 |
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| CDS GCA 72 bp | GTCTCTCTGGTGACCGATAATTCAGTTTGCTCCAGCTaGCCAAGCCCAAAAACCCAGAGGCAGCAGAAGGTG | + |
|
Preference number: 6 (lower is better) Translates to: VSLVTDNSVCSS*PSPKTQRQQKV Trigger: CACCTTCTGCTGCCTCTGGGTTTTTGGGCTTGGGCAGCTGGAGCAAACTGAATTATCGGTCACCAGAGAGAC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000103564.3 |
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| CDS GCA 72 bp | CTCTCATCTGTCTCTCTGGTGACCGATAATTCAGTTTaGTCCAGCTGCCCAAGCCCAAAAACCCAGAGGCAG | + |
|
Preference number: 6 (lower is better) Translates to: LSSVSLVTDNSV*SSCPSPKTQRQ Trigger: CTGCCTCTGGGTTTTTGGGCTTGGGCAGCTGGAGCAAACTGAATTATCGGTCACCAGAGAGACAGATGAGAG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000103564.3 |
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| CDS CCA 72 bp | TTGCCGGTACCAATGTATAGCTGTGTTGGAGAAATATaGAAGAGAAACTATACAGGATATTTGCGCACTCTC | + |
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Preference number: 6 (lower is better) Translates to: LPVPMYSCVGEI*KRNYTGYLRTL Trigger: GAGAGTGCGCAAATATCCTGTATAGTTTCTCTTCCATATTTCTCCAACACAGCTATACATTGGTACCGGCAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103564.3 |
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