Pregenerated sensors for TRGC4 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000076757Ensembl transcript IDs: ENSMUST00000179181.3
Found 32 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | AAAGACAGCAATCAAGCCCCGCTAGACCCTCAGCAGATATTGAGATaGAGGAAGGATGAAGATAGCAGGACTCTCCTGTTTCACCATCCA | + |
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Preference number: 1 (lower is better) Translates to: KDSNQAPLDPQQILR*RKDEDSRTLLFHHP Trigger: TGGATGGTGAAACAGGAGAGTCCTGCTATCTTCATCCTTCCTGCATCTCAATATCTGCTGAGGGTCTAGCGGGGCTTGATTGCTGTCTTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000179181.3 |
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| 3UTR-3UTR GCA 90 bp | CCTGTGATGCTGGGATCTGCTAGAGGGGCTGAGAGAGGATGGGTTAGGATGGCTGATCAGTTTCCACTCTaGTGTGAGAACTATAGTAAT | + |
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Preference number: 2 (lower is better) Translates to: PVMLGSARGAERGWVRMADQFPL*CENYSN Trigger: ATTACTATAGTTCTCACAGCAGAGTGGAAACTGATC...AGCCATCCTAACCCATCCTCTCTCAGCCCCTCTAGCAGATCCCAGCATCACAGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000179181.3 |
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| 3UTR-3UTR CCA 90 bp | GTTCAAATAAAGTTATTTAGGGCATATGAAGTGGAGGCTCTGGGGGAATTATCTGGGGCTGAGAGAGGATaGGTTAGGATGGCTGGATGC | + |
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Preference number: 2 (lower is better) Translates to: VQIKLFRAYEVEALGELSGAERG*VRMAGC Trigger: GCATCCAGCCATCCTAACCCATCCTCTCTCAGCCCC...AGATAATTCCCCCAGAGCCTCCACTTCATATGCCCTAAATAACTTTATTTGAAC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000179181.3 |
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| 3UTR-3UTR CCA 90 bp | GTTCAAATAAAGTTATTTAGGGCATATGAAGTGGAGGCTCTGGGGGAATTATCTGCAGTTTGTGTGCATTaGGCCTGTGATGCTGGGATC | + |
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Preference number: 2 (lower is better) Translates to: VQIKLFRAYEVEALGELSAVCVH*ACDAGI Trigger: GATCCCAGCATCACAGGCCCAATGCACACAAACTGC...AGATAATTCCCCCAGAGCCTCCACTTCATATGCCCTAAATAACTTTATTTGAAC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000179181.3 |
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| 3UTR-3UTR GCA 90 bp | GGTCTGTTGAAGAGTAAAGTTGATCAGTTTCCACTCTGCTGTGAGAACTATAGTATGATACAAAAATCATaGATATGTGTCCTCGAGGAG | + |
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Preference number: 2 (lower is better) Translates to: GLLKSKVDQFPLCCENYSMIQKS*ICVLEE Trigger: CTCCTCGAGGACACATATGCATGATTTTTGTATCAT...ACTATAGTTCTCACAGCAGAGTGGAAACTGATCAACTTTACTCTTCAACAGACC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000179181.3 |
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| 3UTR-3UTR GCA 90 bp | CAGTTTCCACTCTGCTGTGAGAACTATAGTAATGATACAAAAATCATGCATATGCAGCAGATATTGAGATaGAGGAAGGATGAAGATAGC | + |
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Preference number: 2 (lower is better) Translates to: QFPLCCENYSNDTKIMHMQQILR*RKDEDS Trigger: GCTATCTTCATCCTTCCTGCATCTCAATATCTGCTG...CATATGCATGATTTTTGTATCATTACTATAGTTCTCACAGCAGAGTGGAAACTG 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000179181.3 |
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| 3UTR TCA 72 bp | GTGCCTAGGAGCAGCAGTTTGTGTGCATTGGGCCTGTaGTGCTGGGATCTGCTAGAGGGGCTGAGAGAGGAT | + |
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Preference number: 3 (lower is better) Translates to: VPRSSSLCALGL*CWDLLEGLRED Trigger: ATCCTCTCTCAGCCCCTCTAGCAGATCCCAGCATCACAGGCCCAATGCACACAAACTGCTGCTCCTAGGCAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000179181.3 |
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| 3UTR CCA 72 bp | GTGATGCTGGGATCTGCTAGAGGGGCTGAGAGAGGATaGGTTAGGATGGCTGGATGCTTGGAAGCTACGGTC | + |
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Preference number: 3 (lower is better) Translates to: VMLGSARGAERG*VRMAGCLEATV Trigger: GACCGTAGCTTCCAAGCATCCAGCCATCCTAACCCATCCTCTCTCAGCCCCTCTAGCAGATCCCAGCATCAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000179181.3 |
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| 3UTR GCA 72 bp | TGGGGGAATTATCTGGTTCTAGGGTATGAAATGGGGTaGCTAGGAGCAGCAGTTTGTGTGCATTGGGCCTGT | + |
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Preference number: 3 (lower is better) Translates to: WGNYLVLGYEMG*LGAAVCVHWAC Trigger: ACAGGCCCAATGCACACAAACTGCTGCTCCTAGGCACCCCATTTCATACCCTAGAACCAGATAATTCCCCCA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000179181.3 |
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| 3UTR TCA 72 bp | GTTAGGATGGCTGGATGCTTGGAAGCTACGGTCTGTTaGAGAGTAAAGTTGATCAGTTTCCACTCTGCTGTG | + |
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Preference number: 3 (lower is better) Translates to: VRMAGCLEATVC*RVKLISFHSAV Trigger: CACAGCAGAGTGGAAACTGATCAACTTTACTCTTCAACAGACCGTAGCTTCCAAGCATCCAGCCATCCTAAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000179181.3 |
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| 3UTR-3UTR CAA 90 bp | CAGTTTCCACTCTGCTGTGAGAACTATAGTAATGATACAAAAATCATGCATATGGACCCTCAGCAGATATaGAGATGCAGGAAGGATGAA | + |
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Preference number: 3 (lower is better) Translates to: QFPLCCENYSNDTKIMHMDPQQI*RCRKDE Trigger: TTCATCCTTCCTGCATCTCAATATCTGCTGAGGGTC...CATATGCATGATTTTTGTATCATTACTATAGTTCTCACAGCAGAGTGGAAACTG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000179181.3 |
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| 3UTR GCA 72 bp | TCTGCTGTGAGAACTATAGTAATGATACAAAAATCATaGATATGTGTCCTCGAGGAGGTCAAAGACAGCAAT | + |
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Preference number: 3 (lower is better) Translates to: SAVRTIVMIQKS*ICVLEEVKDSN Trigger: ATTGCTGTCTTTGACCTCCTCGAGGACACATATGCATGATTTTTGTATCATTACTATAGTTCTCACAGCAGA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000179181.3 |
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| 3UTR GCA 72 bp | GGTCTGTTGAAGAGTAAAGTTGATCAGTTTCCACTCTaGTGTGAGAACTATAGTAATGATACAAAAATCATG | + |
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Preference number: 3 (lower is better) Translates to: GLLKSKVDQFPL*CENYSNDTKIM Trigger: CATGATTTTTGTATCATTACTATAGTTCTCACAGCAGAGTGGAAACTGATCAACTTTACTCTTCAACAGACC 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000179181.3 |
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| 3UTR CAA 72 bp | GACAGCAATCAAGCCCCGCTAGACCCTCAGCAGATATaGAGATGCAGGAAGGATGAAGATAGCAGGACTCTC | + |
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Preference number: 4 (lower is better) Translates to: DSNQAPLDPQQI*RCRKDEDSRTL Trigger: GAGAGTCCTGCTATCTTCATCCTTCCTGCATCTCAATATCTGCTGAGGGTCTAGCGGGGCTTGATTGCTGTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000179181.3 |
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| CDS-3UTR TCA 90 bp | AGACAGCAATCAAGCCCCGCTAGACCCTCAGCAGATATTGAGATGCAGGAAGGAATGTTCTTTAGCCATTaGATCTTCAGTCACCGTCAG | + |
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Preference number: 4 (lower is better) Translates to: RQQSSPARPSADIEMQEGMFFSH*IFSHRQ Trigger: CTGACGGTGACTGAAGATTCAATGGCTAAAGAACAT...TCCTTCCTGCATCTCAATATCTGCTGAGGGTCTAGCGGGGCTTGATTGCTGTCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000179181.3 |
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| CDS-3UTR CCA 90 bp | TATCTGGTTCTAGGGTATGAAATGGGGTGCCTAGGAGCAGCAGTTTGTGTGCATACAACGAAGGCCAAGTaGACCATGCTCTTGAAGAAC | + |
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Preference number: 4 (lower is better) Translates to: YLVLGYEMGCLGAAVCVHTTKAK*TMLLKN Trigger: GTTCTTCAAGAGCATGGTCCACTTGGCCTTCGTTGT...ATGCACACAAACTGCTGCTCCTAGGCACCCCATTTCATACCCTAGAACCAGATA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000179181.3 |
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| CDS-3UTR TCA 90 bp | TATTTAGGGCATATGAAGTGGAGGCTCTGGGGGAATTATCTGGTTCTAGGGTATATGCATAGGTGGTGGTaGCCTGAAGCTGCAACATAT | + |
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Preference number: 4 (lower is better) Translates to: YLGHMKWRLWGNYLVLGYMHRWW*PEAATY Trigger: ATATGTTGCAGCTTCAGGTCACCACCACCTATGCAT...ATACCCTAGAACCAGATAATTCCCCCAGAGCCTCCACTTCATATGCCCTAAATA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000179181.3 |
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| CDS-3UTR TCA 90 bp | CAGTTTCCACTCTGCTGTGAGAACTATAGTAATGATACAAAAATCATGCATATGACATGGCTGCTCTTCTaGATAGACAGAATACAACGA | + |
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Preference number: 4 (lower is better) Translates to: QFPLCCENYSNDTKIMHMTWLLF*IDRIQR Trigger: TCGTTGTATTCTGTCTATTCAGAAGAGCAGCCATGT...CATATGCATGATTTTTGTATCATTACTATAGTTCTCACAGCAGAGTGGAAACTG 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000179181.3 |
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| CDS-3UTR CAA 90 bp | GATCTGCTAGAGGGGCTGAGAGAGGATGGGTTAGGATGGCTGGATGCTTGGAAGCAGCCTTATGGAGATTaGTTTCAGCAGCAGAAGGAA | + |
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Preference number: 5 (lower is better) Translates to: DLLEGLREDGLGWLDAWKQPYGD*FQQQKE Trigger: TTCCTTCTGCTGCTGAAACAAATCTCCATAAGGCTG...CTTCCAAGCATCCAGCCATCCTAACCCATCCTCTCTCAGCCCCTCTAGCAGATC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000179181.3 |
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| CDS-3UTR CAA 90 bp | TGGGATCTGCTAGAGGGGCTGAGAGAGGATGGGTTAGGATGGCTGGATGCTTGGTGGTCAACTCCTCTTTaGTTGTTTTCGTGTTTGACA | + |
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Preference number: 5 (lower is better) Translates to: WDLLEGLREDGLGWLDAWWSTPL*LFSCLT Trigger: TGTCAAACACGAAAACAACAAAAGAGGAGTTGACCA...CCAAGCATCCAGCCATCCTAACCCATCCTCTCTCAGCCCCTCTAGCAGATCCCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000179181.3 |
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| CDS-3UTR CAA 90 bp | GTTCAAATAAAGTTATTTAGGGCATATGAAGTGGAGGCTCTGGGGGAATTATCTTCCAGATCAGTAGCATaGTTAACATTTTCATGCCGC | + |
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Preference number: 5 (lower is better) Translates to: VQIKLFRAYEVEALGELSSRSVA*LTFSCR Trigger: GCGGCATGAAAATGTTAACAATGCTACTGATCTGGA...AGATAATTCCCCCAGAGCCTCCACTTCATATGCCCTAAATAACTTTATTTGAAC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000179181.3 |
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| CDS-3UTR CAA 90 bp | CACTCTGCTGTGAGAACTATAGTAATGATACAAAAATCATGCATATGTGTCCTCAGGAAAATAGTAGGCTaGGGAGAAAAGTCTGAGTCA | + |
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Preference number: 5 (lower is better) Translates to: HSAVRTIVMIQKSCICVLRKIVG*GEKSES Trigger: TGACTCAGACTTTTCTCCCAAGCCTACTATTTTCCT...GAGGACACATATGCATGATTTTTGTATCATTACTATAGTTCTCACAGCAGAGTG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000179181.3 |
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| CDS CCA 90 bp | TTAATAGTTGTGAAAGCTTTACCTATGGGAGGAAACAGAATCTCTTaGTCAACTCCTCTTTTGTTGTTTTCGTGTTTGACAATGCAACTA | + |
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Preference number: 5 (lower is better) Translates to: LIVVKALPMGGNRIS*STPLLLFSCLTMQL Trigger: TAGTTGCATTGTCAAACACGAAAACAACAAAAGAGGAGTTGACCAAGAGATTCTGTTTCCTCCCATAGGTAAAGCTTTCACAACTATTAA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000179181.3 |
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| CDS GCA 72 bp | CATGCTCTTGAAGAACAGGATGAGGTAGGTGTAGAATaGATAGGTGGTGGTGACCTGAAGCTGCAACATATC | + |
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Preference number: 6 (lower is better) Translates to: HALEEQDEVGVE*IGGGDLKLQHI Trigger: GATATGTTGCAGCTTCAGGTCACCACCACCTATGCATTCTACACCTACCTCATCCTGTTCTTCAAGAGCATG 47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000179181.3 |
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| CDS TCA 72 bp | ATGAACGTTGATCATCACAGGACATGGCTGCTCTTCTaGATAGACAGAATACAACGAAGGCCAAGTGGACCA | + |
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Preference number: 6 (lower is better) Translates to: MNVDHHRTWLLF*IDRIQRRPSGP Trigger: TGGTCCACTTGGCCTTCGTTGTATTCTGTCTATTCAGAAGAGCAGCCATGTCCTGTGATGATCAACGTTCAT 46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000179181.3 |
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| CDS CCA 72 bp | GTGAAAGCTTTACCTATGGGAGGAAACAGAATCTCTTaGTCAACTCCTCTTTTGTTGTTTTCGTGTTTGACA | + |
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Preference number: 6 (lower is better) Translates to: VKALPMGGNRIS*STPLLLFSCLT Trigger: TGTCAAACACGAAAACAACAAAAGAGGAGTTGACCAAGAGATTCTGTTTCCTCCCATAGGTAAAGCTTTCAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000179181.3 |
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| CDS CAA 72 bp | TGTGAAAGCTTTACCTATGGGAGGAAACAGAATCTCTaGGTCAACTCCTCTTTTGTTGTTTTCGTGTTTGAC | + |
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Preference number: 6 (lower is better) Translates to: CESFTYGRKQNL*VNSSFVVFVFD Trigger: GTCAAACACGAAAACAACAAAAGAGGAGTTGACCAAGAGATTCTGTTTCCTCCCATAGGTAAAGCTTTCACA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000179181.3 |
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| CDS CAA 90 bp | GGAAACAGAATCTCTTGGTCAACTCCTCTTTTGTTGTTTTCGTGTTaGACAATGCAACTATGTTCTTTAGCCATTGAATCTTCAGTCACC | + |
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Preference number: 6 (lower is better) Translates to: GNRISWSTPLLLFSC*TMQLCSLAIESSVT Trigger: GGTGACTGAAGATTCAATGGCTAAAGAACATAGTTGCATTGTCAAACACGAAAACAACAAAAGAGGAGTTGACCAAGAGATTCTGTTTCC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000179181.3 |
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| CDS CAA 72 bp | ATGGGAGGAAACAGAATCTCTTGGTCAACTCCTCTTTaGTTGTTTTCGTGTTTGACAATGCAACTATGTTCT | + |
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Preference number: 6 (lower is better) Translates to: MGGNRISWSTPL*LFSCLTMQLCS Trigger: AGAACATAGTTGCATTGTCAAACACGAAAACAACAAAAGAGGAGTTGACCAAGAGATTCTGTTTCCTCCCAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000179181.3 |
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| CDS CAA 72 bp | GGAGGAAACAGAATCTCTTGGTCAACTCCTCTTTTGTaGTTTTCGTGTTTGACAATGCAACTATGTTCTTTA | + |
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Preference number: 6 (lower is better) Translates to: GGNRISWSTPLL*FSCLTMQLCSL Trigger: TAAAGAACATAGTTGCATTGTCAAACACGAAAACAACAAAAGAGGAGTTGACCAAGAGATTCTGTTTCCTCC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000179181.3 |
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| CDS CAA 90 bp | ATTAATAGTTGTGAAAGCTTTACCTATGGGAGGAAACAGAATCTCTaGGTCAACTCCTCTTTTGTTGTTTTCGTGTTTGACAATGCAACT | + |
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Preference number: 6 (lower is better) Translates to: INSCESFTYGRKQNL*VNSSFVVFVFDNAT Trigger: AGTTGCATTGTCAAACACGAAAACAACAAAAGAGGAGTTGACCAAGAGATTCTGTTTCCTCCCATAGGTAAAGCTTTCACAACTATTAAT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000179181.3 |
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| CDS CAA 72 bp | ATCTCTTGGTCAACTCCTCTTTTGTTGTTTTCGTGTTaGACAATGCAACTATGTTCTTTAGCCATTGAATCT | + |
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Preference number: 6 (lower is better) Translates to: ISWSTPLLLFSC*TMQLCSLAIES Trigger: AGATTCAATGGCTAAAGAACATAGTTGCATTGTCAAACACGAAAACAACAAAAGAGGAGTTGACCAAGAGAT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000179181.3 |
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