RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for TRGC3 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000091682

Ensembl transcript IDs: ENSMUST00000164407.2, ENSMUST00000198163.2

Found 16 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS-3UTR GCA 90 bp GGACTTTATAGAAGTGAAAGCCAACAAGTGAAGGCAGCTGGTTCCCCCTTAAGGAGTCCAGGATGGTATTaGCTTTCTTTTCTTTCCAAT +
Preference number: 4 (lower is better)
Translates to: GLYRSESQQVKAAGSPLRSPGWY*LSFLSN
Trigger: ATTGGAAAGAAAAGAAAGGCAATACCATCCTGGACT...CCTTAAGGGGGAACCAGCTGCCTTCACTTGTTGGCTTTCACTTCTATAAAGTCC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000198163.2
CDS-3UTR GCA 90 bp GGACTTTATAGAAGTGAAAGCCAACAAGTGAAGGCAGCTGGTTCCCCCTTAAGGCACATATTTTTATCTTaGCAGCAAGTTGTAGGCTTG +
Preference number: 4 (lower is better)
Translates to: GLYRSESQQVKAAGSPLRHIFLS*QQVVGL
Trigger: CAAGCCTACAACTTGCTGGCAAGATAAAAATATGTG...CCTTAAGGGGGAACCAGCTGCCTTCACTTGTTGGCTTTCACTTCTATAAAGTCC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000198163.2
CDS-3UTR GCA 90 bp TATAGAAGTGAAAGCCAACAAGTGAAGGCAGCTGGTTCCCCCTTAAGGCACCTTATCGTGAACTGGAGCTaGAGCACATATTTTTATCTT +
Preference number: 4 (lower is better)
Translates to: YRSESQQVKAAGSPLRHLIVNWS*STYFYL
Trigger: AAGATAAAAATATGTGCTGCAGCTCCAGTTCACGAT...AAGGTGCCTTAAGGGGGAACCAGCTGCCTTCACTTGTTGGCTTTCACTTCTATA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000198163.2
CDS GCA 90 bp GGCAGAGGTGATCGTGAACTGGAGCTGCAGCACATATTTTTATCTTaGCAGCAAGTTGTAGGCTTGGTACTCACGGCAACTTTCTTTATT +
Preference number: 5 (lower is better)
Translates to: GRGDRELELQHIFLS*QQVVGLVLTATFFI
Trigger: AATAAAGAAAGTTGCCGTGAGTACCAAGCCTACAACTTGCTGGCAAGATAAAAATATGTGCTGCAGCTCCAGTTCACGATCACCTCTGCC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000198163.2
CDS-3UTR CAA 90 bp GGACTTTATAGAAGTGAAAGCCAACAAGTGAAGGCAGCTGGTTCCCCCTTAAGGGAGTCCAGGATGGTATaGCCTTTCTTTTCTTTCCAA +
Preference number: 5 (lower is better)
Translates to: GLYRSESQQVKAAGSPLRESRMV*PFFSFQ
Trigger: TTGGAAAGAAAAGAAAGGCAATACCATCCTGGACTC...CCTTAAGGGGGAACCAGCTGCCTTCACTTGTTGGCTTTCACTTCTATAAAGTCC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000198163.2
CDS-3UTR CAA 90 bp GGACTTTATAGAAGTGAAAGCCAACAAGTGAAGGCAGCTGGTTCCCCCTTAAGGGCACATATTTTTATCTaGCCAGCAAGTTGTAGGCTT +
Preference number: 5 (lower is better)
Translates to: GLYRSESQQVKAAGSPLRAHIFI*PASCRL
Trigger: AAGCCTACAACTTGCTGGCAAGATAAAAATATGTGC...CCTTAAGGGGGAACCAGCTGCCTTCACTTGTTGGCTTTCACTTCTATAAAGTCC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000198163.2
CDS TCA 90 bp TTGGTACTCACGGCAACTTTCTTTATTGAAGGAAAGAAAATCTCTTaGTCTGCTCCTCCTTTGTTGTTCTCATGTTTGACAATACATCTG +
Preference number: 5 (lower is better)
Translates to: LVLTATFFIEGKKIS*SAPPLLFSCLTIHL
Trigger: CAGATGTATTGTCAAACATGAGAACAACAAAGGAGGAGCAGATCAAGAGATTTTCTTTCCTTCAATAAAGAAAGTTGCCGTGAGTACCAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000164407.2
ENSMUST00000198163.2
CDS CAA 72 bp GATCGTGAACTGGAGCTGCAGCACATCATTTTTATCTaGCCAGCAAGTTGTAGGCTTGGTACTCACGGCAAC +
Preference number: 6 (lower is better)
Translates to: DRELELQHIIFI*PASCRLGTHGN
Trigger: GTTGCCGTGAGTACCAAGCCTACAACTTGCTGGCAAGATAAAAATGATGTGCTGCAGCTCCAGTTCACGATC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000164407.2
CDS GCA 72 bp ATCGTGAACTGGAGCTGCAGCACATCATTTTTATCTTaGCAGCAAGTTGTAGGCTTGGTACTCACGGCAACT +
Preference number: 6 (lower is better)
Translates to: IVNWSCSTSFLS*QQVVGLVLTAT
Trigger: AGTTGCCGTGAGTACCAAGCCTACAACTTGCTGGCAAGATAAAAATGATGTGCTGCAGCTCCAGTTCACGAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000164407.2
CDS GCA 72 bp GATCGTGAACTGGAGCTGCAGCACATATTTTTATCTTaGCAGCAAGTTGTAGGCTTGGTACTCACGGCAACT +
Preference number: 6 (lower is better)
Translates to: DRELELQHIFLS*QQVVGLVLTAT
Trigger: AGTTGCCGTGAGTACCAAGCCTACAACTTGCTGGCAAGATAAAAATATGTGCTGCAGCTCCAGTTCACGATC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000198163.2
CDS GCA 72 bp CCTCCTTTGTTGTTCTCATGTTTGACAATACATCTGTaGTCTTTCCCCATTGACCTTTCAGGCACAGTAAGC +
Preference number: 6 (lower is better)
Translates to: PPLLFSCLTIHL*SFPIDLSGTVS
Trigger: GCTTACTGTGCCTGAAAGGTCAATGGGGAAAGAGCACAGATGTATTGTCAAACATGAGAACAACAAAGGAGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000164407.2
ENSMUST00000198163.2
CDS CAA 90 bp TGGAGCTGCAGCACATCATTTTTATCTTGCCAGCAAGTTGTAGGCTaGGTACTCACGGCAACTTTCTTTATTGAAGGAAAGAAAATCTCT +
Preference number: 6 (lower is better)
Translates to: WSCSTSFLSCQQVVG*VLTATFFIEGKKIS
Trigger: AGAGATTTTCTTTCCTTCAATAAAGAAAGTTGCCGTGAGTACCAAGCCTACAACTTGCTGGCAAGATAAAAATGATGTGCTGCAGCTCCA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000164407.2
CDS CAA 90 bp CTGGAGCTGCAGCACATATTTTTATCTTGCCAGCAAGTTGTAGGCTaGGTACTCACGGCAACTTTCTTTATTGAAGGAAAGAAAATCTCT +
Preference number: 6 (lower is better)
Translates to: LELQHIFLSCQQVVG*VLTATFFIEGKKIS
Trigger: AGAGATTTTCTTTCCTTCAATAAAGAAAGTTGCCGTGAGTACCAAGCCTACAACTTGCTGGCAAGATAAAAATATGTGCTGCAGCTCCAG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000198163.2
CDS CAA 72 bp AGCACATCATTTTTATCTTGCCAGCAAGTTGTAGGCTaGGTACTCACGGCAACTTTCTTTATTGAAGGAAAG +
Preference number: 6 (lower is better)
Translates to: STSFLSCQQVVG*VLTATFFIEGK
Trigger: CTTTCCTTCAATAAAGAAAGTTGCCGTGAGTACCAAGCCTACAACTTGCTGGCAAGATAAAAATGATGTGCT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000164407.2
CDS CAA 72 bp CAGCACATATTTTTATCTTGCCAGCAAGTTGTAGGCTaGGTACTCACGGCAACTTTCTTTATTGAAGGAAAG +
Preference number: 6 (lower is better)
Translates to: QHIFLSCQQVVG*VLTATFFIEGK
Trigger: CTTTCCTTCAATAAAGAAAGTTGCCGTGAGTACCAAGCCTACAACTTGCTGGCAAGATAAAAATATGTGCTG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000198163.2
CDS TCA 72 bp TGGTATTGCCTTTCTTTTCTTTCCAATACACCCTTATaGCATCGGGAAAGAACTTTTCAAGGACACAAAGGT +
Preference number: 6 (lower is better)
Translates to: WYCLSFLSNTPL*HRERTFQGHKG
Trigger: ACCTTTGTGTCCTTGAAAAGTTCTTTCCCGATGTCATAAGGGTGTATTGGAAAGAAAAGAAAGGCAATACCA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000164407.2
ENSMUST00000198163.2