Pregenerated sensors for TRGC2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000076752Ensembl transcript IDs: ENSMUST00000103561.3
Found 16 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | GTGGGGGTCTTCATGGAGTTAGCTGGTTCAAGAGCAACAAGGGCCATGGGTAAAGACTTCTGGAGTGGATaGAATCAGGAAGAAGGTGAG | + |
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Preference number: 2 (lower is better) Translates to: VGVFMELAGSRATRAMGKDFWSG*NQEEGE Trigger: CTCACCTTCTTCCTGATTCCATCCACTCCAGAAGTC...TTTACCCATGGCCCTTGTTGCTCTTGAACCAGCTAACTCCATGAAGACCCCCAC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000103561.3 |
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| 3UTR-3UTR CCA 90 bp | GTCTTCATGGAGTTAGCTGGTTCAAGAGCAACAAGGGCCATGGGTAAAAGCTGTAGGGGACTTCTGGAGTaGATGGAATCAGGAAGAAGG | + |
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Preference number: 2 (lower is better) Translates to: VFMELAGSRATRAMGKSCRGLLE*MESGRR Trigger: CCTTCTTCCTGATTCCATCCACTCCAGAAGTCCCCT...ACAGCTTTTACCCATGGCCCTTGTTGCTCTTGAACCAGCTAACTCCATGAAGAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000103561.3 |
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| 3UTR TCA 72 bp | ATTGCATACAAAAGTTCAGAAAATGTTTATGCAACATaGGTGAGGGACTTTATAGAAGTGAAAGCCAACAAG | + |
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Preference number: 3 (lower is better) Translates to: IAYKSSENVYAT*VRDFIEVKANK Trigger: CTTGTTGGCTTTCACTTCTATAAAGTCCCTCACTCATGTTGCATAAACATTTTCTGAACTTTTGTATGCAAT 35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000103561.3 |
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| CDS-3UTR TCA 90 bp | GTGGGGGTCTTCATGGAGTTAGCTGGTTCAAGAGCAACAAGGGCCATGGGTAAAGGGAAGAAAATCTCTTaGTCTGCTCCTCCTTTGTTG | + |
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Preference number: 4 (lower is better) Translates to: VGVFMELAGSRATRAMGKGKKIS*SAPPLL Trigger: CAACAAAGGAGGAGCAGATCAAGAGATTTTCTTCCC...TTTACCCATGGCCCTTGTTGCTCTTGAACCAGCTAACTCCATGAAGACCCCCAC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000103561.3 |
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| CDS-3UTR GCA 90 bp | GTGGGGGTCTTCATGGAGTTAGCTGGTTCAAGAGCAACAAGGGCCATGGGTAAAAGGACTTCTTCTCATTaGCACAGACAGATGTTCTTC | + |
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Preference number: 4 (lower is better) Translates to: VGVFMELAGSRATRAMGKRTSSH*HRQMFF Trigger: GAAGAACATCTGTCTGTGGCAATGAGAAGAAGTCCT...TTTACCCATGGCCCTTGTTGCTCTTGAACCAGCTAACTCCATGAAGACCCCCAC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000103561.3 |
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| CDS-3UTR GCA 90 bp | GTCTTCATGGAGTTAGCTGGTTCAAGAGCAACAAGGGCCATGGGTAAAAGCTGTACATCATTTTTATCTTaGCAGCAAGTTGTAGCAACT | + |
|
Preference number: 4 (lower is better) Translates to: VFMELAGSRATRAMGKSCTSFLS*QQVVAT Trigger: AGTTGCTACAACTTGCTGGCAAGATAAAAATGATGT...ACAGCTTTTACCCATGGCCCTTGTTGCTCTTGAACCAGCTAACTCCATGAAGAC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000103561.3 |
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| CDS-3UTR GCA 90 bp | AAGTTCAGAAAATGTTTATGCAACATGAGTGAGGGACTTTATAGAAGTGAAAGCCTCGTGAACTGGAACTaGAGCACATCATTTTTATCT | + |
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Preference number: 4 (lower is better) Translates to: KFRKCLCNMSEGLYRSESLVNWN*STSFLS Trigger: AGATAAAAATGATGTGCTGCAGTTCCAGTTCACGAG...GCTTTCACTTCTATAAAGTCCCTCACTCATGTTGCATAAACATTTTCTGAACTT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000103561.3 |
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| CDS-3UTR TCA 90 bp | AAGTTCAGAAAATGTTTATGCAACATGAGTGAGGGACTTTATAGAAGTGAAAGCTGTTGTTCTCATGTTTaGCAATACAACTGTGCTCTT | + |
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Preference number: 4 (lower is better) Translates to: KFRKCLCNMSEGLYRSESCCSHV*QYNCAL Trigger: AAGAGCACAGTTGTATTGTCAAACATGAGAACAACA...GCTTTCACTTCTATAAAGTCCCTCACTCATGTTGCATAAACATTTTCTGAACTT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103561.3 |
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| CDS TCA 90 bp | GGAAGAAAATCTCTTGATCTGCTCCTCCTTTGTTGTTCTCATGTTTaGCAATACAACTGTGCTCTTTCCCCATTGCCCTTTCAGGCACAG | + |
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Preference number: 5 (lower is better) Translates to: GRKSLDLLLLCCSHV*QYNCALSPLPFQAQ Trigger: CTGTGCCTGAAAGGGCAATGGGGAAAGAGCACAGTTGTATTGTCAAACATGAGAACAACAAAGGAGGAGCAGATCAAGAGATTTTCTTCC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000103561.3 |
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| CDS-3UTR CAA 90 bp | GTCTTCATGGAGTTAGCTGGTTCAAGAGCAACAAGGGCCATGGGTAAAAGCTGTCACATCATTTTTATCTaGCCAGCAAGTTGTAGCAAC | + |
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Preference number: 5 (lower is better) Translates to: VFMELAGSRATRAMGKSCHIIFI*PASCSN Trigger: GTTGCTACAACTTGCTGGCAAGATAAAAATGATGTG...ACAGCTTTTACCCATGGCCCTTGTTGCTCTTGAACCAGCTAACTCCATGAAGAC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000103561.3 |
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| CDS-3UTR CAA 90 bp | ATACAAGGCACAGAATCAAACAGTAAAGAAGGCTCTTCAGGTTGTCTAGAGTGGTTGTTGTTCTCATGTTaGACAATACAACTGTGCTCT | + |
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Preference number: 5 (lower is better) Translates to: IQGTESNSKEGSSGCLEWLLFSC*TIQLCS Trigger: AGAGCACAGTTGTATTGTCAAACATGAGAACAACAA...CCACTCTAGACAACCTGAAGAGCCTTCTTTACTGTTTGATTCTGTGCCTTGTAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103561.3 |
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| CDS TCA 90 bp | CAGCAAGTTGTAGCAACTTTCTTTATTGAAGGGAAGAAAATCTCTTaGTCTGCTCCTCCTTTGTTGTTCTCATGTTTGACAATACAACTG | + |
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Preference number: 5 (lower is better) Translates to: QQVVATFFIEGKKIS*SAPPLLFSCLTIQL Trigger: CAGTTGTATTGTCAAACATGAGAACAACAAAGGAGGAGCAGATCAAGAGATTTTCTTCCCTTCAATAAAGAAAGTTGCTACAACTTGCTG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103561.3 |
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| CDS-3UTR CAA 90 bp | AAGTTCAGAAAATGTTTATGCAACATGAGTGAGGGACTTTATAGAAGTGAAAGCGAGTCCAGGATAGTATaGCCATTCTTTTCTTTCCAA | + |
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Preference number: 5 (lower is better) Translates to: KFRKCLCNMSEGLYRSESESRIV*PFFSFQ Trigger: TTGGAAAGAAAAGAATGGCAATACTATCCTGGACTC...GCTTTCACTTCTATAAAGTCCCTCACTCATGTTGCATAAACATTTTCTGAACTT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000103561.3 |
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| CDS CAA 90 bp | CCCTTAGTCTTCAGCGTATCCCCTTCCTGGGAGTCCAGGATAGTATaGCCATTCTTTTCTTTCCAATACACCCTTATGACATCGGGAAAG | + |
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Preference number: 6 (lower is better) Translates to: PLVFSVSPSWESRIV*PFFSFQYTLMTSGK Trigger: CTTTCCCGATGTCATAAGGGTGTATTGGAAAGAAAAGAATGGCAATACTATCCTGGACTCCCAGGAAGGGGATACGCTGAAGACTAAGGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000103561.3 |
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| CDS CCA 72 bp | ATGTATGTGCCCTTAGTCTTCAGCGTATCCCCTTCCTaGGAGTCCAGGATAGTATTGCCATTCTTTTCTTTC | + |
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Preference number: 6 (lower is better) Translates to: MYVPLVFSVSPS*ESRIVLPFFSF Trigger: GAAAGAAAAGAATGGCAATACTATCCTGGACTCCCAGGAAGGGGATACGCTGAAGACTAAGGGCACATACAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000103561.3 |
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| CDS TCA 72 bp | TCTCTTGATCTGCTCCTCCTTTGTTGTTCTCATGTTTaGCAATACAACTGTGCTCTTTCCCCATTGCCCTTT | + |
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Preference number: 6 (lower is better) Translates to: SLDLLLLCCSHV*QYNCALSPLPF Trigger: AAAGGGCAATGGGGAAAGAGCACAGTTGTATTGTCAAACATGAGAACAACAAAGGAGGAGCAGATCAAGAGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103561.3 |
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