Pregenerated sensors for TRGC1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000076749Ensembl transcript IDs: ENSMUST00000103558.3
Found 23 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR GCA 90 bp | TTCATGGAGTTAGCTGGTTCAAGAGCAACAAGGGCTATGGGTAAAAGCTGTAGGGGGGGAGGGGACTTCTaGAGTGGATGGAATCAGGAA | + |
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Preference number: 2 (lower is better) Translates to: FMELAGSRATRAMGKSCRGGGDF*SGWNQE Trigger: TTCCTGATTCCATCCACTGCAGAAGTCCCCTCCCCC...CCTACAGCTTTTACCCATAGCCCTTGTTGCTCTTGAACCAGCTAACTCCATGAA 50% GC, longest homopolymer 7 nt, total homopolymer stretches 15 nt. Matches the following 1 transcripts: ENSMUST00000103558.3 |
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| 3UTR-3UTR TCA 90 bp | TTCATGGAGTTAGCTGGTTCAAGAGCAACAAGGGCTATGGGTAAAAGCTGTAGGGTGAAAGCCAACAAGTaGAGGCAGCTGGACCTCCTT | + |
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Preference number: 2 (lower is better) Translates to: FMELAGSRATRAMGKSCRVKANK*RQLDLL Trigger: AAGGAGGTCCAGCTGCCTTCACTTGTTGGCTTTCAC...CCTACAGCTTTTACCCATAGCCCTTGTTGCTCTTGAACCAGCTAACTCCATGAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103558.3 |
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| 3UTR-3UTR GCA 90 bp | TTCATGGAGTTAGCTGGTTCAAGAGCAACAAGGGCTATGGGTAAAAGCTGTAGGTTCAGAAAATGTTTATaGAACATGAGTGAGGGACTT | + |
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Preference number: 2 (lower is better) Translates to: FMELAGSRATRAMGKSCRFRKCL*NMSEGL Trigger: AAGTCCCTCACTCATGTTGCATAAACATTTTCTGAA...CCTACAGCTTTTACCCATAGCCCTTGTTGCTCTTGAACCAGCTAACTCCATGAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000103558.3 |
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| 3UTR-3UTR CAA 90 bp | TTCATGGAGTTAGCTGGTTCAAGAGCAACAAGGGCTATGGGTAAAAGCTGTAGGGAGAAGTTGCAGAAATaGCACACAAAAGTTCAGAAA | + |
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Preference number: 3 (lower is better) Translates to: FMELAGSRATRAMGKSCREKLQK*HTKVQK Trigger: TTTCTGAACTTTTGTGTGCAATTTCTGCAACTTCTC...CCTACAGCTTTTACCCATAGCCCTTGTTGCTCTTGAACCAGCTAACTCCATGAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000103558.3 |
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| 3UTR TCA 72 bp | ATTGCACACAAAAGTTCAGAAAATGTTTATGCAACATaGGTGAGGGACTTTATAGAAGTGAAAGCCAACAAG | + |
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Preference number: 3 (lower is better) Translates to: IAHKSSENVYAT*VRDFIEVKANK Trigger: CTTGTTGGCTTTCACTTCTATAAAGTCCCTCACTCATGTTGCATAAACATTTTCTGAACTTTTGTGTGCAAT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000103558.3 |
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| CDS-3UTR GCA 90 bp | TTCATGGAGTTAGCTGGTTCAAGAGCAACAAGGGCTATGGGTAAAAGCTGTAGGGTGCTCTTTCCCCATTaGCCTTTCAGGCACTGTAAG | + |
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Preference number: 4 (lower is better) Translates to: FMELAGSRATRAMGKSCRVLFPH*PFRHCK Trigger: CTTACAGTGCCTGAAAGGGCAATGGGGAAAGAGCAC...CCTACAGCTTTTACCCATAGCCCTTGTTGCTCTTGAACCAGCTAACTCCATGAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000103558.3 |
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| CDS-3UTR TCA 90 bp | TTCATGGAGTTAGCTGGTTCAAGAGCAACAAGGGCTATGGGTAAAAGCTGTAGGGGAAAGAAAATCTCTTaGTCTGCTCCTCCTTTGTTG | + |
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Preference number: 4 (lower is better) Translates to: FMELAGSRATRAMGKSCRGKKIS*SAPPLL Trigger: CAACAAAGGAGGAGCAGATCAAGAGATTTTCTTTCC...CCTACAGCTTTTACCCATAGCCCTTGTTGCTCTTGAACCAGCTAACTCCATGAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000103558.3 |
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| CDS-3UTR GCA 90 bp | TTCATGGAGTTAGCTGGTTCAAGAGCAACAAGGGCTATGGGTAAAAGCTGTAGGGAAAATCTCTTGATCTaGTCCTCCTTTGTTGTTCTC | + |
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Preference number: 4 (lower is better) Translates to: FMELAGSRATRAMGKSCRENLLI*SSFVVL Trigger: GAGAACAACAAAGGAGGAGCAGATCAAGAGATTTTC...CCTACAGCTTTTACCCATAGCCCTTGTTGCTCTTGAACCAGCTAACTCCATGAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000103558.3 |
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| CDS-3UTR GCA 90 bp | TTCATGGAGTTAGCTGGTTCAAGAGCAACAAGGGCTATGGGTAAAAGCTGTAGGATCGTGAACTGGAGCTaGAGCACATCATTTTTATCT | + |
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Preference number: 4 (lower is better) Translates to: FMELAGSRATRAMGKSCRIVNWS*STSFLS Trigger: AGATAAAAATGATGTGCTGCAGCTCCAGTTCACGAT...CCTACAGCTTTTACCCATAGCCCTTGTTGCTCTTGAACCAGCTAACTCCATGAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000103558.3 |
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| CDS-3UTR GCA 90 bp | TTCATGGAGTTAGCTGGTTCAAGAGCAACAAGGGCTATGGGTAAAAGCTGTAGGAGGATTTCTTCTCATTaGCACAGACAGATGTTCTTC | + |
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Preference number: 4 (lower is better) Translates to: FMELAGSRATRAMGKSCRRISSH*HRQMFF Trigger: GAAGAACATCTGTCTGTGGCAATGAGAAGAAATCCT...CCTACAGCTTTTACCCATAGCCCTTGTTGCTCTTGAACCAGCTAACTCCATGAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103558.3 |
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| CDS-3UTR TCA 90 bp | TTCAGAAAATGTTTATGCAACATGAGTGAGGGACTTTATAGAAGTGAAAGCCAAAGTAGATCACACTCTTaGGGAGCAGGAGAAGGTAGG | + |
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Preference number: 4 (lower is better) Translates to: FRKCLCNMSEGLYRSESQSRSHS*GAGEGR Trigger: CCTACCTTCTCCTGCTCCTCAAGAGTGTGATCTACT...TTGGCTTTCACTTCTATAAAGTCCCTCACTCATGTTGCATAAACATTTTCTGAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103558.3 |
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| CDS-3UTR GCA 90 bp | TTCAGAAAATGTTTATGCAACATGAGTGAGGGACTTTATAGAAGTGAAAGCCAAACATCATTTTTATCTTaGCAGCAAGTTGTAGGCTTG | + |
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Preference number: 4 (lower is better) Translates to: FRKCLCNMSEGLYRSESQTSFLS*QQVVGL Trigger: CAAGCCTACAACTTGCTGGCAAGATAAAAATGATGT...TTGGCTTTCACTTCTATAAAGTCCCTCACTCATGTTGCATAAACATTTTCTGAA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000103558.3 |
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| CDS GCA 90 bp | GCAGAGGTGATCGTGAACTGGAGCTGCAGCACATCATTTTTATCTTaGCAGCAAGTTGTAGGCTTGGTACTCACAGCAACTTTCTTTATT | + |
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Preference number: 5 (lower is better) Translates to: AEVIVNWSCSTSFLS*QQVVGLVLTATFFI Trigger: AATAAAGAAAGTTGCTGTGAGTACCAAGCCTACAACTTGCTGGCAAGATAAAAATGATGTGCTGCAGCTCCAGTTCACGATCACCTCTGC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000103558.3 |
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| CDS-3UTR CAA 90 bp | ACAGAATCAAACAGTAAAGAAGGCTCTTCAGGTTGTCTAGAGTGGGGGTCTTCACAGTCTTATGGAGATTaGTTTCAGCAACAGAAGGAA | + |
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Preference number: 5 (lower is better) Translates to: TESNSKEGSSGCLEWGSSQSYGD*FQQQKE Trigger: TTCCTTCTGTTGCTGAAACAAATCTCCATAAGACTG...TGAAGACCCCCACTCTAGACAACCTGAAGAGCCTTCTTTACTGTTTGATTCTGT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000103558.3 |
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| CDS TCA 90 bp | TTGCCAGCAAGTTGTAGGCTTGGTACTCACAGCAACTTTCTTTATTaGAGGAAAGAAAATCTCTTGATCTGCTCCTCCTTTGTTGTTCTC | + |
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Preference number: 5 (lower is better) Translates to: LPASCRLGTHSNFLY*RKENLLICSSFVVL Trigger: GAGAACAACAAAGGAGGAGCAGATCAAGAGATTTTCTTTCCTTCAATAAAGAAAGTTGCTGTGAGTACCAAGCCTACAACTTGCTGGCAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103558.3 |
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| CDS-3UTR CAA 90 bp | TGCACACAAAAGTTCAGAAAATGTTTATGCAACATGAGTGAGGGACTTTATAGAGAGTCCAGGATAGTATaGCCATCCTTTTCTTTCCAA | + |
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Preference number: 5 (lower is better) Translates to: CTQKFRKCLCNMSEGLYRESRIV*PSFSFQ Trigger: TTGGAAAGAAAAGGATGGCAATACTATCCTGGACTC...TCTATAAAGTCCCTCACTCATGTTGCATAAACATTTTCTGAACTTTTGTGTGCA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000103558.3 |
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| CDS TCA 90 bp | TTGGTACTCACAGCAACTTTCTTTATTGAAGGAAAGAAAATCTCTTaGTCTGCTCCTCCTTTGTTGTTCTCATGTTTGACAATACATCTG | + |
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Preference number: 5 (lower is better) Translates to: LVLTATFFIEGKKIS*SAPPLLFSCLTIHL Trigger: CAGATGTATTGTCAAACATGAGAACAACAAAGGAGGAGCAGATCAAGAGATTTTCTTTCCTTCAATAAAGAAAGTTGCTGTGAGTACCAA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103558.3 |
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| CDS-3UTR CAA 90 bp | TTCAGAAAATGTTTATGCAACATGAGTGAGGGACTTTATAGAAGTGAAAGCCAAAGGAAAGAAAATCTCTaGATCTGCTCCTCCTTTGTT | + |
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Preference number: 5 (lower is better) Translates to: FRKCLCNMSEGLYRSESQRKENL*ICSSFV Trigger: AACAAAGGAGGAGCAGATCAAGAGATTTTCTTTCCT...TTGGCTTTCACTTCTATAAAGTCCCTCACTCATGTTGCATAAACATTTTCTGAA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000103558.3 |
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| CDS CAA 72 bp | GATCGTGAACTGGAGCTGCAGCACATCATTTTTATCTaGCCAGCAAGTTGTAGGCTTGGTACTCACAGCAAC | + |
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Preference number: 6 (lower is better) Translates to: DRELELQHIIFI*PASCRLGTHSN Trigger: GTTGCTGTGAGTACCAAGCCTACAACTTGCTGGCAAGATAAAAATGATGTGCTGCAGCTCCAGTTCACGATC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000103558.3 |
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| CDS GCA 72 bp | ATCGTGAACTGGAGCTGCAGCACATCATTTTTATCTTaGCAGCAAGTTGTAGGCTTGGTACTCACAGCAACT | + |
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Preference number: 6 (lower is better) Translates to: IVNWSCSTSFLS*QQVVGLVLTAT Trigger: AGTTGCTGTGAGTACCAAGCCTACAACTTGCTGGCAAGATAAAAATGATGTGCTGCAGCTCCAGTTCACGAT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000103558.3 |
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| CDS CAA 72 bp | TTCAGCGTATCCCCTTCCTGGGAGTCCAGGATAGTATaGCCATCCTTTTCTTTCCAATACACCCTTATAACA | + |
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Preference number: 6 (lower is better) Translates to: FSVSPSWESRIV*PSFSFQYTLIT Trigger: TGTTATAAGGGTGTATTGGAAAGAAAAGGATGGCAATACTATCCTGGACTCCCAGGAAGGGGATACGCTGAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000103558.3 |
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| CDS CAA 90 bp | TGGAGCTGCAGCACATCATTTTTATCTTGCCAGCAAGTTGTAGGCTaGGTACTCACAGCAACTTTCTTTATTGAAGGAAAGAAAATCTCT | + |
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Preference number: 6 (lower is better) Translates to: WSCSTSFLSCQQVVG*VLTATFFIEGKKIS Trigger: AGAGATTTTCTTTCCTTCAATAAAGAAAGTTGCTGTGAGTACCAAGCCTACAACTTGCTGGCAAGATAAAAATGATGTGCTGCAGCTCCA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000103558.3 |
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| CDS CAA 72 bp | AGCACATCATTTTTATCTTGCCAGCAAGTTGTAGGCTaGGTACTCACAGCAACTTTCTTTATTGAAGGAAAG | + |
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Preference number: 6 (lower is better) Translates to: STSFLSCQQVVG*VLTATFFIEGK Trigger: CTTTCCTTCAATAAAGAAAGTTGCTGTGAGTACCAAGCCTACAACTTGCTGGCAAGATAAAAATGATGTGCT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000103558.3 |
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