Pregenerated sensors for TREX2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000031372Ensembl transcript IDs: ENSMUST00000033738.8
Found 52 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | AGTACAGAGAAGGCTGTAGGATCCTATGGCCAGGTAGGTCAGGGCTaGGGAAGGCCACAAAGGTGCTACAGAGAGCAAAGATGTAGCTCA | + |
|
Preference number: 1 (lower is better) Translates to: STEKAVGSYGQVGQG*GRPQRCYREQRCSS Trigger: TGAGCTACATCTTTGCTCTCTGTAGCACCTTTGTGGCCTTCCTCAGCCCTGACCTACCTGGCCATAGGATCCTACAGCCTTCTCTGTACT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033738.8 |
||
| 3UTR-3UTR GCA 90 bp | ATGAAAGATGGAAGCCCTGAAAGAGCAACTCACAGGCTGGCCAGAAGGTGCCCAGGAAGGCCACAAAGGTaGTACAGAGAGCAAAGATGT | + |
|
Preference number: 2 (lower is better) Translates to: MKDGSPERATHRLARRCPGRPQR*YREQRC Trigger: ACATCTTTGCTCTCTGTAGCACCTTTGTGGCCTTCC...TGGGCACCTTCTGGCCAGCCTGTGAGTTGCTCTTTCAGGGCTTCCATCTTTCAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033738.8 |
||
| 3UTR CCA 72 bp | CTGATAGTGGAGTACAGAGAAGGCTGTAGGATCCTATaGCCAGGTAGGTCAGGGCTGAGGAAGGCCACAAAG | + |
|
Preference number: 3 (lower is better) Translates to: LIVEYREGCRIL*PGRSGLRKATK Trigger: CTTTGTGGCCTTCCTCAGCCCTGACCTACCTGGCCATAGGATCCTACAGCCTTCTCTGTACTCCACTATCAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033738.8 |
||
| CDS-3UTR GCA 90 bp | GAAGGCTGTAGGATCCTATGGCCAGGTAGGTCAGGGCTGAGGAAGGCCACAAAGGCCCAGCTGCGGGCCTaGTCATCTGCCCAGGCGAGC | + |
|
Preference number: 4 (lower is better) Translates to: EGCRILWPGRSGLRKATKAQLRA*SSAQAS Trigger: GCTCGCCTGGGCAGATGAGCAGGCCCGCAGCTGGGC...CTTTGTGGCCTTCCTCAGCCCTGACCTACCTGGCCATAGGATCCTACAGCCTTC 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033738.8 |
||
| CDS-3UTR GCA 90 bp | AGGATCCTATGGCCAGGTAGGTCAGGGCTGAGGAAGGCCACAAAGGTGCTACAGGTCCAGGCCCCGCAATaGAGGCAGTGTGTCCAGGCA | + |
|
Preference number: 4 (lower is better) Translates to: RILWPGRSGLRKATKVLQVQAPQ*RQCVQA Trigger: TGCCTGGACACACTGCCTGCATTGCGGGGCCTGGAC...CTGTAGCACCTTTGTGGCCTTCCTCAGCCCTGACCTACCTGGCCATAGGATCCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033738.8 |
||
| CDS-3UTR CCA 90 bp | GCAACTCACAGGCTGGCCAGAAGGTGCCCAACTGATAGTGGAGTACAGAGAAGGCAGATGGGGCCCTCCTaGCGGCTTAGGAAGCCCTGC | + |
|
Preference number: 4 (lower is better) Translates to: ATHRLARRCPTDSGVQRRQMGPS*RLRKPC Trigger: GCAGGGCTTCCTAAGCCGCCAGGAGGGCCCCATCTG...CCTTCTCTGTACTCCACTATCAGTTGGGCACCTTCTGGCCAGCCTGTGAGTTGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033738.8 |
||
| CDS-3UTR GCA 90 bp | GCTACAGAGAGCAAAGATGTAGCTCAGAGCCTGGATGAATGGATGGCACTGGCAGCGGGCCTGCTCATCTaGCCAGGCGAGCAGCTCAGG | + |
|
Preference number: 4 (lower is better) Translates to: ATESKDVAQSLDEWMALAAGLLI*PGEQLR Trigger: CCTGAGCTGCTCGCCTGGGCAGATGAGCAGGCCCGC...TGCCAGTGCCATCCATTCATCCAGGCTCTGAGCTACATCTTTGCTCTCTGTAGC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033738.8 |
||
| CDS-3UTR GCA 90 bp | GGAAGCCCTGAAAGAGCAACTCACAGGCTGGCCAGAAGGTGCCCAACTGATAGTCCAGGCTGTAGCTTTTaGGGCCTTGAGCCCTGGTGC | + |
|
Preference number: 4 (lower is better) Translates to: GSPERATHRLARRCPTDSPGCSF*GLEPWC Trigger: GCACCAGGGCTCAAGGCCGCAAAAGCTACAGCCTGG...ACTATCAGTTGGGCACCTTCTGGCCAGCCTGTGAGTTGCTCTTTCAGGGCTTCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033738.8 |
||
| CDS-3UTR GCA 90 bp | GGAAGCCCTGAAAGAGCAACTCACAGGCTGGCCAGAAGGTGCCCAACTGATAGTCAATATGAGCCCAGCTaGGGGCCTGCTCATCTGCCC | + |
|
Preference number: 4 (lower is better) Translates to: GSPERATHRLARRCPTDSQYEPS*GPAHLP Trigger: GGGCAGATGAGCAGGCCCGCAGCTGGGCTCATATTG...ACTATCAGTTGGGCACCTTCTGGCCAGCCTGTGAGTTGCTCTTTCAGGGCTTCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033738.8 |
||
| CDS-3UTR TCA 90 bp | CAACTCACAGGCTGGCCAGAAGGTGCCCAACTGATAGTGGAGTACAGAGAAGGCGGCACATGCACAGTGTaGGCTTGTCCAGAACACGGG | + |
|
Preference number: 4 (lower is better) Translates to: QLTGWPEGAQLIVEYREGGTCTV*ACPEHG Trigger: CCCGTGTTCTGGACAAGCTCACACTGTGCATGTGCC...GCCTTCTCTGTACTCCACTATCAGTTGGGCACCTTCTGGCCAGCCTGTGAGTTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033738.8 |
||
| CDS-3UTR TCA 90 bp | GGCCACAAAGGTGCTACAGAGAGCAAAGATGTAGCTCAGAGCCTGGATGAATGGTACATGGGCTCAATATaGGCCCAGCTGCGGGCCTGC | + |
|
Preference number: 4 (lower is better) Translates to: GHKGATESKDVAQSLDEWYMGSI*AQLRAC Trigger: GCAGGCCCGCAGCTGGGCTCATATTGAGCCCATGTA...CCATTCATCCAGGCTCTGAGCTACATCTTTGCTCTCTGTAGCACCTTTGTGGCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033738.8 |
||
| CDS-3UTR CCA 90 bp | AAAGGTGCTACAGAGAGCAAAGATGTAGCTCAGAGCCTGGATGAATGGATGGCAGGGCCACAAGGCAGATaGGGCCCTCCTGGCGGCTTA | + |
|
Preference number: 4 (lower is better) Translates to: KGATESKDVAQSLDEWMAGPQGR*GPPGGL Trigger: TAAGCCGCCAGGAGGGCCCCATCTGCCTTGTGGCCC...TGCCATCCATTCATCCAGGCTCTGAGCTACATCTTTGCTCTCTGTAGCACCTTT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033738.8 |
||
| CDS-3UTR CCA 90 bp | CAACTCACAGGCTGGCCAGAAGGTGCCCAACTGATAGTGGAGTACAGAGAAGGCCTGAATGGGCAGCACTaGGTTCAGCCTGGAAGTAGC | + |
|
Preference number: 4 (lower is better) Translates to: QLTGWPEGAQLIVEYREGLNGQH*VQPGSS Trigger: GCTACTTCCAGGCTGAACCCAGTGCTGCCCATTCAG...GCCTTCTCTGTACTCCACTATCAGTTGGGCACCTTCTGGCCAGCCTGTGAGTTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033738.8 |
||
| CDS-3UTR CCA 90 bp | AGGATCCTATGGCCAGGTAGGTCAGGGCTGAGGAAGGCCACAAAGGTGCTACAGGCTTGGACCATCAGGTaGCACGTACATGGGCTCAAT | + |
|
Preference number: 4 (lower is better) Translates to: RILWPGRSGLRKATKVLQAWTIR*HVHGLN Trigger: ATTGAGCCCATGTACGTGCCACCTGATGGTCCAAGC...CTGTAGCACCTTTGTGGCCTTCCTCAGCCCTGACCTACCTGGCCATAGGATCCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033738.8 |
||
| CDS-3UTR GCA 90 bp | CAACTCACAGGCTGGCCAGAAGGTGCCCAACTGATAGTGGAGTACAGAGAAGGCGACGTTGTAGCTCCGTaGACAGCAGTGGGAAGTCAT | + |
|
Preference number: 4 (lower is better) Translates to: QLTGWPEGAQLIVEYREGDVVAP*TAVGSH Trigger: ATGACTTCCCACTGCTGTGCACGGAGCTACAACGTC...GCCTTCTCTGTACTCCACTATCAGTTGGGCACCTTCTGGCCAGCCTGTGAGTTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033738.8 |
||
| CDS-3UTR CCA 90 bp | GGAAGCCCTGAAAGAGCAACTCACAGGCTGGCCAGAAGGTGCCCAACTGATAGTAGAATCATCCCGTTCTaGGTTCTCCAGGGAAGAGCG | + |
|
Preference number: 4 (lower is better) Translates to: GSPERATHRLARRCPTDSRIIPF*VLQGRA Trigger: CGCTCTTCCCTGGAGAACCCAGAACGGGATGATTCT...ACTATCAGTTGGGCACCTTCTGGCCAGCCTGTGAGTTGCTCTTTCAGGGCTTCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033738.8 |
||
| CDS-3UTR CCA 90 bp | GGAAGCCCTGAAAGAGCAACTCACAGGCTGGCCAGAAGGTGCCCAACTGATAGTCTCCGTGCACAGCAGTaGGAAGTCATAATCGAAGCC | + |
|
Preference number: 4 (lower is better) Translates to: GSPERATHRLARRCPTDSLRAQQ*EVIIEA Trigger: GGCTTCGATTATGACTTCCCACTGCTGTGCACGGAG...ACTATCAGTTGGGCACCTTCTGGCCAGCCTGTGAGTTGCTCTTTCAGGGCTTCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033738.8 |
||
| CDS-3UTR CCA 90 bp | GCTACAGAGAGCAAAGATGTAGCTCAGAGCCTGGATGAATGGATGGCACTGGCATCACCTTCTGCTGAATaGGCAGCACTGGGTTCAGCC | + |
|
Preference number: 4 (lower is better) Translates to: ATESKDVAQSLDEWMALASPSAE*AALGSA Trigger: GGCTGAACCCAGTGCTGCCCATTCAGCAGAAGGTGA...TGCCAGTGCCATCCATTCATCCAGGCTCTGAGCTACATCTTTGCTCTCTGTAGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033738.8 |
||
| CDS-3UTR GCA 90 bp | GCTACAGAGAGCAAAGATGTAGCTCAGAGCCTGGATGAATGGATGGCACTGGCAATCAGAAGCAGGGTGTaGACATCACCTTCTGCTGAA | + |
|
Preference number: 4 (lower is better) Translates to: ATESKDVAQSLDEWMALAIRSRV*TSPSAE Trigger: TTCAGCAGAAGGTGATGTGCACACCCTGCTTCTGAT...TGCCAGTGCCATCCATTCATCCAGGCTCTGAGCTACATCTTTGCTCTCTGTAGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033738.8 |
||
| CDS GCA 90 bp | CAGCCTGGAAGTAGCGGTGGAAGAGACTGGCCAGGCTGTAGCTTTTaGGGCCTTGAGCCCTGGTGCCGTGGCTGTGAGCACGGTCCAGGC | + |
|
Preference number: 5 (lower is better) Translates to: QPGSSGGRDWPGCSF*GLEPWCRGCEHGPG Trigger: GCCTGGACCGTGCTCACAGCCACGGCACCAGGGCTCAAGGCCGCAAAAGCTACAGCCTGGCCAGTCTCTTCCACCGCTACTTCCAGGCTG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033738.8 |
||
| CDS GCA 90 bp | TGGGCCACAAGGCAGATGGGGCCCTCCTGGCGGCTTAGGAAGCCCTaGAGTGTCCTTACCACAGCGCCATTGAAACCAGCCTTCCCGCAG | + |
|
Preference number: 5 (lower is better) Translates to: WATRQMGPSWRLRKP*SVLTTAPLKPAFPQ Trigger: CTGCGGGAAGGCTGGTTTCAATGGCGCTGTGGTAAGGACACTGCAGGGCTTCCTAAGCCGCCAGGAGGGCCCCATCTGCCTTGTGGCCCA 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033738.8 |
||
| CDS TCA 90 bp | GCTTCGAGGCTTGGACCATCAGGTGGCACGTACATGGGCTCAATATaGGCCCAGCTGCGGGCCTGCTCATCTGCCCAGGCGAGCAGCTCA | + |
|
Preference number: 5 (lower is better) Translates to: ASRLGPSGGTYMGSI*AQLRACSSAQASSS Trigger: TGAGCTGCTCGCCTGGGCAGATGAGCAGGCCCGCAGCTGGGCTCATATTGAGCCCATGTACGTGCCACCTGATGGTCCAAGCCTCGAAGC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033738.8 |
||
| CDS CCA 90 bp | AATGGGCAGCACTGGGTTCAGCCTGGAAGTAGCGGTGGAAGAGACTaGCCAGGCTGTAGCTTTTGCGGCCTTGAGCCCTGGTGCCGTGGC | + |
|
Preference number: 5 (lower is better) Translates to: NGQHWVQPGSSGGRD*PGCSFCGLEPWCRG Trigger: GCCACGGCACCAGGGCTCAAGGCCGCAAAAGCTACAGCCTGGCCAGTCTCTTCCACCGCTACTTCCAGGCTGAACCCAGTGCTGCCCATT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033738.8 |
||
| CDS GCA 90 bp | TTGGACCATCAGGTGGCACGTACATGGGCTCAATATGAGCCCAGCTaGGGGCCTGCTCATCTGCCCAGGCGAGCAGCTCAGGAGCACGAT | + |
|
Preference number: 5 (lower is better) Translates to: LDHQVARTWAQYEPS*GPAHLPRRAAQEHD Trigger: ATCGTGCTCCTGAGCTGCTCGCCTGGGCAGATGAGCAGGCCCGCAGCTGGGCTCATATTGAGCCCATGTACGTGCCACCTGATGGTCCAA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033738.8 |
||
| CDS GCA 90 bp | CTGCGGGCCTGCTCATCTGCCCAGGCGAGCAGCTCAGGAGCACGATaGAGGAAGATCAGAAGCAGGGTGTGCACATCACCTTCTGCTGAA | + |
|
Preference number: 5 (lower is better) Translates to: LRACSSAQASSSGAR*RKIRSRVCTSPSAE Trigger: TTCAGCAGAAGGTGATGTGCACACCCTGCTTCTGATCTTCCTGCATCGTGCTCCTGAGCTGCTCGCCTGGGCAGATGAGCAGGCCCGCAG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033738.8 |
||
| CDS GCA 90 bp | CACGTACATGGGCTCAATATGAGCCCAGCTGCGGGCCTGCTCATCTaGCCAGGCGAGCAGCTCAGGAGCACGATGCAGGAAGATCAGAAG | + |
|
Preference number: 5 (lower is better) Translates to: HVHGLNMSPAAGLLI*PGEQLRSTMQEDQK Trigger: CTTCTGATCTTCCTGCATCGTGCTCCTGAGCTGCTCGCCTGGGCAGATGAGCAGGCCCGCAGCTGGGCTCATATTGAGCCCATGTACGTG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033738.8 |
||
| CDS CCA 90 bp | CGCAATGCAGGCAGTGTGTCCAGGCAGACAGTGTCTTGGGGCAGATaGGCACCCAGACGTTGTAGCTCCGTGCACAGCAGTGGGAAGTCA | + |
|
Preference number: 5 (lower is better) Translates to: RNAGSVSRQTVSWGR*APRRCSSVHSSGKS Trigger: TGACTTCCCACTGCTGTGCACGGAGCTACAACGTCTGGGTGCCCATCTGCCCCAAGACACTGTCTGCCTGGACACACTGCCTGCATTGCG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033738.8 |
||
| CDS TCA 90 bp | CCTGGCGGCTTAGGAAGCCCTGCAGTGTCCTTACCACAGCGCCATTaGAACCAGCCTTCCCGCAGTGCATCAGGCTTTCGCTGCTCAAAC | + |
|
Preference number: 5 (lower is better) Translates to: PGGLGSPAVSLPQRH*NQPSRSASGFRCSN Trigger: GTTTGAGCAGCGAAAGCCTGATGCACTGCGGGAAGGCTGGTTTCAATGGCGCTGTGGTAAGGACACTGCAGGGCTTCCTAAGCCGCCAGG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033738.8 |
||
| CDS GCA 90 bp | GCGAGCAGCTCAGGAGCACGATGCAGGAAGATCAGAAGCAGGGTGTaGACATCACCTTCTGCTGAATGGGCAGCACTGGGTTCAGCCTGG | + |
|
Preference number: 5 (lower is better) Translates to: ASSSGARCRKIRSRV*TSPSAEWAALGSAW Trigger: CCAGGCTGAACCCAGTGCTGCCCATTCAGCAGAAGGTGATGTGCACACCCTGCTTCTGATCTTCCTGCATCGTGCTCCTGAGCTGCTCGC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033738.8 |
||
| CDS-3UTR CAA 90 bp | ATGAAAGATGGAAGCCCTGAAAGAGCAACTCACAGGCTGGCCAGAAGGTGCCCAGTAATCTCACTGGCCTaGGCAGTAAAGGGGCGCTCC | + |
|
Preference number: 5 (lower is better) Translates to: MKDGSPERATHRLARRCPVISLA*AVKGRS Trigger: GGAGCGCCCCTTTACTGCCAAGGCCAGTGAGATTAC...TGGGCACCTTCTGGCCAGCCTGTGAGTTGCTCTTTCAGGGCTTCCATCTTTCAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033738.8 |
||
| CDS GCA 90 bp | TGCAGTGTCCTTACCACAGCGCCATTGAAACCAGCCTTCCCGCAGTaGATCAGGCTTTCGCTGCTCAAACCAGTAATCTCACTGGCCTTG | + |
|
Preference number: 5 (lower is better) Translates to: CSVLTTAPLKPAFPQ*IRLSLLKPVISLAL Trigger: CAAGGCCAGTGAGATTACTGGTTTGAGCAGCGAAAGCCTGATGCACTGCGGGAAGGCTGGTTTCAATGGCGCTGTGGTAAGGACACTGCA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033738.8 |
||
| CDS CCA 90 bp | GTCCAGAACACGGGGCAGCACCAAGGAACCAGAATCATCCCGTTCTaGGTTCTCCAGGGAAGAGCGGTGAACAGCAAAAAGGGATATCTC | + |
|
Preference number: 5 (lower is better) Translates to: VQNTGQHQGTRIIPF*VLQGRAVNSKKGYL Trigger: GAGATATCCCTTTTTGCTGTTCACCGCTCTTCCCTGGAGAACCCAGAACGGGATGATTCTGGTTCCTTGGTGCTGCCCCGTGTTCTGGAC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033738.8 |
||
| CDS CCA 90 bp | AAAGGGATATCTCTGCAATCTCAGGATCCATGTTTGGGAGCCCAGTaGCTTCTAGGTCCAGGAATACAAAGGTCTCAGCCCGGGGTGGCT | + |
|
Preference number: 5 (lower is better) Translates to: KGISLQSQDPCLGAQ*LLGPGIQRSQPGVA Trigger: AGCCACCCCGGGCTGAGACCTTTGTATTCCTGGACCTAGAAGCCACTGGGCTCCCAAACATGGATCCTGAGATTGCAGAGATATCCCTTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033738.8 |
||
| CDS TCA 90 bp | AAGGAACCAGAATCATCCCGTTCTGGGTTCTCCAGGGAAGAGCGGTaGACAGCAAAAAGGGATATCTCTGCAATCTCAGGATCCATGTTT | + |
|
Preference number: 5 (lower is better) Translates to: KEPESSRSGFSREER*TAKRDISAISGSMF Trigger: AAACATGGATCCTGAGATTGCAGAGATATCCCTTTTTGCTGTTCACCGCTCTTCCCTGGAGAACCCAGAACGGGATGATTCTGGTTCCTT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033738.8 |
||
| CDS CAA 90 bp | GAAGTAGCGGTGGAAGAGACTGGCCAGGCTGTAGCTTTTGCGGCCTaGAGCCCTGGTGCCGTGGCTGTGAGCACGGTCCAGGCCCCGCAA | + |
|
Preference number: 6 (lower is better) Translates to: EVAVEETGQAVAFAA*SPGAVAVSTVQAPQ Trigger: TTGCGGGGCCTGGACCGTGCTCACAGCCACGGCACCAGGGCTCAAGGCCGCAAAAGCTACAGCCTGGCCAGTCTCTTCCACCGCTACTTC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033738.8 |
||
| CDS GCA 72 bp | GGGCTCAATATGAGCCCAGCTGCGGGCCTGCTCATCTaGCCAGGCGAGCAGCTCAGGAGCACGATGCAGGAA | + |
|
Preference number: 6 (lower is better) Translates to: GLNMSPAAGLLI*PGEQLRSTMQE Trigger: TTCCTGCATCGTGCTCCTGAGCTGCTCGCCTGGGCAGATGAGCAGGCCCGCAGCTGGGCTCATATTGAGCCC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033738.8 |
||
| CDS CAA 72 bp | GTGGAAGAGACTGGCCAGGCTGTAGCTTTTGCGGCCTaGAGCCCTGGTGCCGTGGCTGTGAGCACGGTCCAG | + |
|
Preference number: 6 (lower is better) Translates to: VEETGQAVAFAA*SPGAVAVSTVQ Trigger: CTGGACCGTGCTCACAGCCACGGCACCAGGGCTCAAGGCCGCAAAAGCTACAGCCTGGCCAGTCTCTTCCAC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033738.8 |
||
| CDS TCA 72 bp | CTTGGACCATCAGGTGGCACGTACATGGGCTCAATATaGGCCCAGCTGCGGGCCTGCTCATCTGCCCAGGCG | + |
|
Preference number: 6 (lower is better) Translates to: LGPSGGTYMGSI*AQLRACSSAQA Trigger: CGCCTGGGCAGATGAGCAGGCCCGCAGCTGGGCTCATATTGAGCCCATGTACGTGCCACCTGATGGTCCAAG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033738.8 |
||
| CDS CCA 72 bp | GGCAGTGTGTCCAGGCAGACAGTGTCTTGGGGCAGATaGGCACCCAGACGTTGTAGCTCCGTGCACAGCAGT | + |
|
Preference number: 6 (lower is better) Translates to: GSVSRQTVSWGR*APRRCSSVHSS Trigger: ACTGCTGTGCACGGAGCTACAACGTCTGGGTGCCCATCTGCCCCAAGACACTGTCTGCCTGGACACACTGCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033738.8 |
||
| CDS CCA 72 bp | CACTGGGTTCAGCCTGGAAGTAGCGGTGGAAGAGACTaGCCAGGCTGTAGCTTTTGCGGCCTTGAGCCCTGG | + |
|
Preference number: 6 (lower is better) Translates to: HWVQPGSSGGRD*PGCSFCGLEPW Trigger: CCAGGGCTCAAGGCCGCAAAAGCTACAGCCTGGCCAGTCTCTTCCACCGCTACTTCCAGGCTGAACCCAGTG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033738.8 |
||
| CDS CCA 72 bp | AGTCATAATCGAAGCCATTGTGGGCCACAAGGCAGATaGGGCCCTCCTGGCGGCTTAGGAAGCCCTGCAGTG | + |
|
Preference number: 6 (lower is better) Translates to: SHNRSHCGPQGR*GPPGGLGSPAV Trigger: CACTGCAGGGCTTCCTAAGCCGCCAGGAGGGCCCCATCTGCCTTGTGGCCCACAATGGCTTCGATTATGACT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033738.8 |
||
| CDS CCA 72 bp | AGGCTTCGAGGCTTGGACCATCAGGTGGCACGTACATaGGCTCAATATGAGCCCAGCTGCGGGCCTGCTCAT | + |
|
Preference number: 6 (lower is better) Translates to: RLRGLDHQVART*AQYEPSCGPAH Trigger: ATGAGCAGGCCCGCAGCTGGGCTCATATTGAGCCCATGTACGTGCCACCTGATGGTCCAAGCCTCGAAGCCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033738.8 |
||
| CDS CAA 90 bp | TCCTGGCGGCTTAGGAAGCCCTGCAGTGTCCTTACCACAGCGCCATaGAAACCAGCCTTCCCGCAGTGCATCAGGCTTTCGCTGCTCAAA | + |
|
Preference number: 6 (lower is better) Translates to: SWRLRKPCSVLTTAP*KPAFPQCIRLSLLK Trigger: TTTGAGCAGCGAAAGCCTGATGCACTGCGGGAAGGCTGGTTTCAATGGCGCTGTGGTAAGGACACTGCAGGGCTTCCTAAGCCGCCAGGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033738.8 |
||
| CDS TCA 72 bp | TTAGGAAGCCCTGCAGTGTCCTTACCACAGCGCCATTaGAACCAGCCTTCCCGCAGTGCATCAGGCTTTCGC | + |
|
Preference number: 6 (lower is better) Translates to: LGSPAVSLPQRH*NQPSRSASGFR Trigger: GCGAAAGCCTGATGCACTGCGGGAAGGCTGGTTTCAATGGCGCTGTGGTAAGGACACTGCAGGGCTTCCTAA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033738.8 |
||
| CDS CAA 72 bp | AGGCTTTCGCTGCTCAAACCAGTAATCTCACTGGCCTaGGCAGTAAAGGGGCGCTCCGGGCACATGCACAGT | + |
|
Preference number: 6 (lower is better) Translates to: RLSLLKPVISLA*AVKGRSGHMHS Trigger: ACTGTGCATGTGCCCGGAGCGCCCCTTTACTGCCAAGGCCAGTGAGATTACTGGTTTGAGCAGCGAAAGCCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033738.8 |
||
| CDS CAA 72 bp | CTTAGGAAGCCCTGCAGTGTCCTTACCACAGCGCCATaGAAACCAGCCTTCCCGCAGTGCATCAGGCTTTCG | + |
|
Preference number: 6 (lower is better) Translates to: LRKPCSVLTTAP*KPAFPQCIRLS Trigger: CGAAAGCCTGATGCACTGCGGGAAGGCTGGTTTCAATGGCGCTGTGGTAAGGACACTGCAGGGCTTCCTAAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033738.8 |
||
| CDS TCA 72 bp | GAAGATCAGAAGCAGGGTGTGCACATCACCTTCTGCTaGATGGGCAGCACTGGGTTCAGCCTGGAAGTAGCG | + |
|
Preference number: 6 (lower is better) Translates to: EDQKQGVHITFC*MGSTGFSLEVA Trigger: CGCTACTTCCAGGCTGAACCCAGTGCTGCCCATTCAGCAGAAGGTGATGTGCACACCCTGCTTCTGATCTTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033738.8 |
||
| CDS GCA 72 bp | CTTGGGGCAGATGGGCACCCAGACGTTGTAGCTCCGTaGACAGCAGTGGGAAGTCATAATCGAAGCCATTGT | + |
|
Preference number: 6 (lower is better) Translates to: LGADGHPDVVAP*TAVGSHNRSHC Trigger: ACAATGGCTTCGATTATGACTTCCCACTGCTGTGCACGGAGCTACAACGTCTGGGTGCCCATCTGCCCCAAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033738.8 |
||
| CDS GCA 72 bp | TCAGGAGCACGATGCAGGAAGATCAGAAGCAGGGTGTaGACATCACCTTCTGCTGAATGGGCAGCACTGGGT | + |
|
Preference number: 6 (lower is better) Translates to: SGARCRKIRSRV*TSPSAEWAALG Trigger: ACCCAGTGCTGCCCATTCAGCAGAAGGTGATGTGCACACCCTGCTTCTGATCTTCCTGCATCGTGCTCCTGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033738.8 |
||
| CDS GCA 72 bp | CTTACCACAGCGCCATTGAAACCAGCCTTCCCGCAGTaGATCAGGCTTTCGCTGCTCAAACCAGTAATCTCA | + |
|
Preference number: 6 (lower is better) Translates to: LTTAPLKPAFPQ*IRLSLLKPVIS Trigger: TGAGATTACTGGTTTGAGCAGCGAAAGCCTGATGCACTGCGGGAAGGCTGGTTTCAATGGCGCTGTGGTAAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033738.8 |
||
| CDS TCA 72 bp | GAATCATCCCGTTCTGGGTTCTCCAGGGAAGAGCGGTaGACAGCAAAAAGGGATATCTCTGCAATCTCAGGA | + |
|
Preference number: 6 (lower is better) Translates to: ESSRSGFSREER*TAKRDISAISG Trigger: TCCTGAGATTGCAGAGATATCCCTTTTTGCTGTTCACCGCTCTTCCCTGGAGAACCCAGAACGGGATGATTC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033738.8 |
||
| CDS CAA 90 bp | GGTGAACAGCAAAAAGGGATATCTCTGCAATCTCAGGATCCATGTTaGGGAGCCCAGTGGCTTCTAGGTCCAGGAATACAAAGGTCTCAG | + |
|
Preference number: 6 (lower is better) Translates to: GEQQKGISLQSQDPC*GAQWLLGPGIQRSQ Trigger: CTGAGACCTTTGTATTCCTGGACCTAGAAGCCACTGGGCTCCCAAACATGGATCCTGAGATTGCAGAGATATCCCTTTTTGCTGTTCACC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033738.8 |
||