Pregenerated sensors for TREML1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000023993Ensembl transcript IDs: ENSMUST00000024792.8, ENSMUST00000223956.2, ENSMUST00000224001.2, ENSMUST00000225849.2
Found 76 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CGGTGGGCTGCTGAGGGAGGGTCCATTCCTGGAACTCCAGTGCTCTaGGACGGGCCACAGACAACAAGCCTGTTCCCTTTCTTTCTGGCC | + |
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Preference number: 1 (lower is better) Translates to: RWAAEGGSIPGTPVL*DGPQTTSLFPFFLA Trigger: GGCCAGAAAGAAAGGGAACAGGCTTGTTGTCTGTGGCCCGTCCCAGAGCACTGGAGTTCCAGGAATGGACCCTCCCTCAGCAGCCCACCG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000223956.2 |
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| 3UTR CAA 90 bp | CCTTTGTCCCCTCCTGGGAAGACAACTGTGGCATATGTCACAGACTaGGAGGACATCAGGACCTTAGGAGGCAGAGGGGGCTGTGAGGGT | + |
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Preference number: 2 (lower is better) Translates to: PLSPPGKTTVAYVTD*EDIRTLGGRGGCEG Trigger: ACCCTCACAGCCCCCTCTGCCTCCTAAGGTCCTGATGTCCTCCAAGTCTGTGACATATGCCACAGTTGTCTTCCCAGGAGGGGACAAAGG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000223956.2 |
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| 3UTR-3UTR CCA 90 bp | CCACTCCCTGACTGCACCAAACCAAGATACCAGATTGGAGCCCTGAGTCACCAGAAAGGCAGAGCTAGTTaGCCGGGCTGCAGAGAATTC | + |
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Preference number: 2 (lower is better) Translates to: PLPDCTKPRYQIGALSHQKGRAS*PGCREF Trigger: GAATTCTCTGCAGCCCGGCCAACTAGCTCTGCCTTT...CTGGTGACTCAGGGCTCCAATCTGGTATCTTGGTTTGGTGCAGTCAGGGAGTGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000024792.8 ENSMUST00000224001.2 |
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| 3UTR-3UTR CCA 90 bp | AAACCAAGATACCAGATTGGAGCCCTGAGTCACCAGGCGCTGACATACTCTGGGAAAGGCAGAGCTAGTTaGCCGGGCTGCAGAGAATTC | + |
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Preference number: 2 (lower is better) Translates to: KPRYQIGALSHQALTYSGKGRAS*PGCREF Trigger: GAATTCTCTGCAGCCCGGCCAACTAGCTCTGCCTTT...CCCAGAGTATGTCAGCGCCTGGTGACTCAGGGCTCCAATCTGGTATCTTGGTTT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000024792.8 ENSMUST00000224001.2 |
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| 3UTR-3UTR CCA 90 bp | ATGACGGTAGACCCAGCACCGGGAAGCAGCAGAAAAGAATTCTTTCCCCAAACAACCAAGATACCAGATTaGAGCCCTGAGTCACCAGGC | + |
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Preference number: 2 (lower is better) Translates to: MTVDPAPGSSRKEFFPQTTKIPD*SPESPG Trigger: GCCTGGTGACTCAGGGCTCCAATCTGGTATCTTGGT...TGTTTGGGGAAAGAATTCTTTTCTGCTGCTTCCCGGTGCTGGGTCTACCGTCAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000024792.8 ENSMUST00000224001.2 |
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| 3UTR GCA 72 bp | GGGCTGCTGAGGGAGGGTCCATTCCTGGAACTCCAGTaGTCTGGGACGGGCCACAGACAACAAGCCTGTTCC | + |
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Preference number: 3 (lower is better) Translates to: GLLREGPFLELQ*SGTGHRQQACS Trigger: GGAACAGGCTTGTTGTCTGTGGCCCGTCCCAGAGCACTGGAGTTCCAGGAATGGACCCTCCCTCAGCAGCCC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000223956.2 |
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| 3UTR CCA 72 bp | GGAATGTCCGAGGGTAGTCCCGAGTCACTGCTACGGTaGGCTGCTGAGGGAGGGTCCATTCCTGGAACTCCA | + |
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Preference number: 3 (lower is better) Translates to: GMSEGSPESLLR*AAEGGSIPGTP Trigger: TGGAGTTCCAGGAATGGACCCTCCCTCAGCAGCCCACCGTAGCAGTGACTCGGGACTACCCTCGGACATTCC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000223956.2 |
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| 3UTR CCA 72 bp | GCTGAGGGAGGGTCCATTCCTGGAACTCCAGTGCTCTaGGACGGGCCACAGACAACAAGCCTGTTCCCTTTC | + |
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Preference number: 3 (lower is better) Translates to: AEGGSIPGTPVL*DGPQTTSLFPF Trigger: GAAAGGGAACAGGCTTGTTGTCTGTGGCCCGTCCCAGAGCACTGGAGTTCCAGGAATGGACCCTCCCTCAGC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000223956.2 |
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| 3UTR TCA 72 bp | CCCCAAACACCCCAATCATATCGGAGCACCACTCCCTaGCTGCACCAAACCAAGATACCAGATTGGAGCCCT | + |
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Preference number: 3 (lower is better) Translates to: PQTPQSYRSTTP*LHQTKIPDWSP Trigger: AGGGCTCCAATCTGGTATCTTGGTTTGGTGCAGTCAGGGAGTGGTGCTCCGATATGATTGGGGTGTTTGGGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000024792.8 ENSMUST00000224001.2 |
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| 3UTR CCA 72 bp | CTATTTTACCTTTGTCCCCTCCTGGGAAGACAACTGTaGCATATGTCACAGACTTGGAGGACATCAGGACCT | + |
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Preference number: 3 (lower is better) Translates to: LFYLCPLLGRQL*HMSQTWRTSGP Trigger: AGGTCCTGATGTCCTCCAAGTCTGTGACATATGCCACAGTTGTCTTCCCAGGAGGGGACAAAGGTAAAATAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000223956.2 |
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| 3UTR CCA 72 bp | GTACTCTTATTTACTGGGTGGAGTTTGACTGTTTGGTaGGTCCTGAACTGGCTCACAGGAGGCTATTTTACC | + |
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Preference number: 3 (lower is better) Translates to: VLLFTGWSLTVW*VLNWLTGGYFT Trigger: GGTAAAATAGCCTCCTGTGAGCCAGTTCAGGACCCACCAAACAGTCAAACTCCACCCAGTAAATAAGAGTAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000223956.2 ENSMUST00000225849.2 |
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| 3UTR CCA 72 bp | CCCAAGAGTAATAAATTAAAGTGTACTCTTATTTACTaGGTGGAGTTTGACTGTTTGGTGGGTCCTGAACTG | + |
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Preference number: 3 (lower is better) Translates to: PKSNKLKCTLIY*VEFDCLVGPEL Trigger: CAGTTCAGGACCCACCAAACAGTCAAACTCCACCCAGTAAATAAGAGTACACTTTAATTTATTACTCTTGGG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000223956.2 ENSMUST00000225849.2 |
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| CDS-3UTR TCA 90 bp | AGGGTCCATTCCTGGAACTCCAGTGCTCTGGGACGGGCCACAGACAACAAGCCTCTTGGGCCAGGGACTTaGGAGCCCTCACATCCTGGA | + |
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Preference number: 4 (lower is better) Translates to: RVHSWNSSALGRATDNKPLGPGT*EPSHPG Trigger: TCCAGGATGTGAGGGCTCTCAAGTCCCTGGCCCAAG...AGGCTTGTTGTCTGTGGCCCGTCCCAGAGCACTGGAGTTCCAGGAATGGACCCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000223956.2 |
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| CDS-3UTR CCA 90 bp | CCACTCCCTGACTGCACCAAACCAAGATACCAGATTGGAGCCCTGAGTCACCAGACCCTATGCAGGGTCTaGGGTCCTGCCGCTCCCTCC | + |
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Preference number: 4 (lower is better) Translates to: PLPDCTKPRYQIGALSHQTLCRV*GPAAPS Trigger: GGAGGGAGCGGCAGGACCCCAGACCCTGCATAGGGT...CTGGTGACTCAGGGCTCCAATCTGGTATCTTGGTTTGGTGCAGTCAGGGAGTGG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000024792.8 ENSMUST00000224001.2 |
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| CDS-3UTR TCA 90 bp | CTCCCTGACTGCACCAAACCAAGATACCAGATTGGAGCCCTGAGTCACCAGGCGCCCCACCCAGGTCAGTaGGGAATATGCGCCCGTTTC | + |
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Preference number: 4 (lower is better) Translates to: LPDCTKPRYQIGALSHQAPHPGQ*GICARF Trigger: GAAACGGGCGCATATTCCTCACTGACCTGGGTGGGG...CGCCTGGTGACTCAGGGCTCCAATCTGGTATCTTGGTTTGGTGCAGTCAGGGAG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000024792.8 ENSMUST00000224001.2 |
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| CDS-3UTR GCA 90 bp | CTCCCTGACTGCACCAAACCAAGATACCAGATTGGAGCCCTGAGTCACCAGGCGGGGTGGCAGCCTTCCTaGAAGAACTGGCACCACACC | + |
|
Preference number: 4 (lower is better) Translates to: LPDCTKPRYQIGALSHQAGWQPS*KNWHHT Trigger: GGTGTGGTGCCAGTTCTTGCAGGAAGGCTGCCACCC...CGCCTGGTGACTCAGGGCTCCAATCTGGTATCTTGGTTTGGTGCAGTCAGGGAG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000024792.8 ENSMUST00000224001.2 |
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| CDS-3UTR GCA 90 bp | AAACCAAGATACCAGATTGGAGCCCTGAGTCACCAGGCGCTGACATACTCTGGGCAGGGTCTGGGGTCCTaGCGCTCCCTCCACCACACA | + |
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Preference number: 4 (lower is better) Translates to: KPRYQIGALSHQALTYSGQGLGS*RSLHHT Trigger: TGTGTGGTGGAGGGAGCGGCAGGACCCCAGACCCTG...CCCAGAGTATGTCAGCGCCTGGTGACTCAGGGCTCCAATCTGGTATCTTGGTTT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000024792.8 ENSMUST00000224001.2 |
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| CDS-3UTR CCA 90 bp | TACCAGATTGGAGCCCTGAGTCACCAGGCGCTGACATACTCTGGGCATAAAAGGACCCTATGCAGGGTCTaGGGTCCTGCCGCTCCCTCC | + |
|
Preference number: 4 (lower is better) Translates to: YQIGALSHQALTYSGHKRTLCRV*GPAAPS Trigger: GGAGGGAGCGGCAGGACCCCAGACCCTGCATAGGGT...CCTTTTATGCCCAGAGTATGTCAGCGCCTGGTGACTCAGGGCTCCAATCTGGTA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000024792.8 ENSMUST00000224001.2 |
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| CDS-3UTR CCA 90 bp | ACTGGGTGGAGTTTGACTGTTTGGTGGGTCCTGAACTGGCTCACAGGAGGCTATACCCTATGCAGGGTCTaGGGTCCTGCCGCTCCCTCC | + |
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Preference number: 4 (lower is better) Translates to: TGWSLTVWWVLNWLTGGYTLCRV*GPAAPS Trigger: GGAGGGAGCGGCAGGACCCCAGACCCTGCATAGGGT...ATAGCCTCCTGTGAGCCAGTTCAGGACCCACCAAACAGTCAAACTCCACCCAGT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000225849.2 |
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| CDS-3UTR TCA 90 bp | GACTGCACCAAACCAAGATACCAGATTGGAGCCCTGAGTCACCAGGCGCTGACACCCCACCCAGGTCAGTaGGGAATATGCGCCCGTTTC | + |
|
Preference number: 4 (lower is better) Translates to: DCTKPRYQIGALSHQALTPHPGQ*GICARF Trigger: GAAACGGGCGCATATTCCTCACTGACCTGGGTGGGG...TGTCAGCGCCTGGTGACTCAGGGCTCCAATCTGGTATCTTGGTTTGGTGCAGTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000024792.8 ENSMUST00000224001.2 |
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| CDS-3UTR GCA 90 bp | GCTCACAGGAGGCTATTTTACCTTTGTCCCCTCCTGGGAAGACAACTGTGGCATCAGGGTCTGGGGTCCTaGCGCTCCCTCCACCACACA | + |
|
Preference number: 4 (lower is better) Translates to: AHRRLFYLCPLLGRQLWHQGLGS*RSLHHT Trigger: TGTGTGGTGGAGGGAGCGGCAGGACCCCAGACCCTG...ATGCCACAGTTGTCTTCCCAGGAGGGGACAAAGGTAAAATAGCCTCCTGTGAGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000225849.2 |
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| CDS-3UTR TCA 90 bp | CCACTCCCTGACTGCACCAAACCAAGATACCAGATTGGAGCCCTGAGTCACCAGACTGGCACCACACCTTaGGAGCCCTCACATCCTGGA | + |
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Preference number: 4 (lower is better) Translates to: PLPDCTKPRYQIGALSHQTGTTP*EPSHPG Trigger: TCCAGGATGTGAGGGCTCTCAAGGTGTGGTGCCAGT...CTGGTGACTCAGGGCTCCAATCTGGTATCTTGGTTTGGTGCAGTCAGGGAGTGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000024792.8 ENSMUST00000224001.2 |
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| CDS-3UTR TCA 90 bp | GACTGCACCAAACCAAGATACCAGATTGGAGCCCTGAGTCACCAGGCGCTGACAACTGGCACCACACCTTaGGAGCCCTCACATCCTGGA | + |
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Preference number: 4 (lower is better) Translates to: DCTKPRYQIGALSHQALTTGTTP*EPSHPG Trigger: TCCAGGATGTGAGGGCTCTCAAGGTGTGGTGCCAGT...TGTCAGCGCCTGGTGACTCAGGGCTCCAATCTGGTATCTTGGTTTGGTGCAGTC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000024792.8 ENSMUST00000224001.2 |
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| CDS-3UTR GCA 90 bp | ATGACGGTAGACCCAGCACCGGGAAGCAGCAGAAAAGAATTCTTTCCCCAAACACAGGGTCTGGGGTCCTaGCGCTCCCTCCACCACACA | + |
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Preference number: 4 (lower is better) Translates to: MTVDPAPGSSRKEFFPQTQGLGS*RSLHHT Trigger: TGTGTGGTGGAGGGAGCGGCAGGACCCCAGACCCTG...TGTTTGGGGAAAGAATTCTTTTCTGCTGCTTCCCGGTGCTGGGTCTACCGTCAT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000024792.8 ENSMUST00000224001.2 |
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| CDS-3UTR CCA 90 bp | CCACTCCCTGACTGCACCAAACCAAGATACCAGATTGGAGCCCTGAGTCACCAGGGCACTGCACTAGAATaGATGACCCCACCGGTGCCT | + |
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Preference number: 4 (lower is better) Translates to: PLPDCTKPRYQIGALSHQGTALE*MTPPVP Trigger: AGGCACCGGTGGGGTCATCCATTCTAGTGCAGTGCC...CTGGTGACTCAGGGCTCCAATCTGGTATCTTGGTTTGGTGCAGTCAGGGAGTGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000024792.8 ENSMUST00000224001.2 |
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| CDS-3UTR CCA 90 bp | GACGGTAGACCCAGCACCGGGAAGCAGCAGAAAAGAATTCTTTCCCCAAACACCTTCCTCCCCCTCTCTTaGGCCAGGGACTGGTGGAAG | + |
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Preference number: 4 (lower is better) Translates to: DGRPSTGKQQKRILSPNTFLPLS*ARDWWK Trigger: CTTCCACCAGTCCCTGGCCCAAGAGAGGGGGAGGAA...GGTGTTTGGGGAAAGAATTCTTTTCTGCTGCTTCCCGGTGCTGGGTCTACCGTC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000024792.8 ENSMUST00000224001.2 |
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| CDS-3UTR CCA 90 bp | AGATACCAGATTGGAGCCCTGAGTCACCAGGCGCTGACATACTCTGGGCATAAAGAGTCACTGCTACGGTaGGCTGCTGAGGGAGGGTCC | + |
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Preference number: 4 (lower is better) Translates to: RYQIGALSHQALTYSGHKESLLR*AAEGGS Trigger: GGACCCTCCCTCAGCAGCCCACCGTAGCAGTGACTC...TTTATGCCCAGAGTATGTCAGCGCCTGGTGACTCAGGGCTCCAATCTGGTATCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000024792.8 ENSMUST00000224001.2 |
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| CDS-3UTR TCA 90 bp | CTGGCTCACAGGAGGCTATTTTACCTTTGTCCCCTCCTGGGAAGACAACTGTGGACTGGCACCACACCTTaGGAGCCCTCACATCCTGGA | + |
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Preference number: 4 (lower is better) Translates to: LAHRRLFYLCPLLGRQLWTGTTP*EPSHPG Trigger: TCCAGGATGTGAGGGCTCTCAAGGTGTGGTGCCAGT...CCACAGTTGTCTTCCCAGGAGGGGACAAAGGTAAAATAGCCTCCTGTGAGCCAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000225849.2 |
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| CDS-3UTR GCA 90 bp | TGGGTGGAGTTTGACTGTTTGGTGGGTCCTGAACTGGCTCACAGGAGGCTATTTGGGTGGCAGCCTTCCTaGAAGAACTGGCACCACACC | + |
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Preference number: 4 (lower is better) Translates to: WVEFDCLVGPELAHRRLFGWQPS*KNWHHT Trigger: GGTGTGGTGCCAGTTCTTGCAGGAAGGCTGCCACCC...AAATAGCCTCCTGTGAGCCAGTTCAGGACCCACCAAACAGTCAAACTCCACCCA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000225849.2 |
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| CDS-3UTR GCA 90 bp | CTGCACCAAACCAAGATACCAGATTGGAGCCCTGAGTCACCAGGCGCTGACATACCTGTGTCCTCCTCCTaGAGGGTCACCATTTCCACC | + |
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Preference number: 4 (lower is better) Translates to: LHQTKIPDWSPESPGADIPVSSS*RVTIST Trigger: GGTGGAAATGGTGACCCTGCAGGAGGAGGACACAGG...TATGTCAGCGCCTGGTGACTCAGGGCTCCAATCTGGTATCTTGGTTTGGTGCAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000024792.8 ENSMUST00000224001.2 |
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| CDS-3UTR GCA 90 bp | CCTGACTGCACCAAACCAAGATACCAGATTGGAGCCCTGAGTCACCAGGCGCTGTTCTTTCTCGTCCTCTaGTTCCTCCCCCTCTCTTGG | + |
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Preference number: 4 (lower is better) Translates to: PDCTKPRYQIGALSHQALFFLVL*FLPLSW Trigger: CCAAGAGAGGGGGAGGAAGCAGAGGACGAGAAAGAA...CAGCGCCTGGTGACTCAGGGCTCCAATCTGGTATCTTGGTTTGGTGCAGTCAGG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000024792.8 ENSMUST00000224001.2 |
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| CDS-3UTR CCA 90 bp | CCACTCCCTGACTGCACCAAACCAAGATACCAGATTGGAGCCCTGAGTCACCAGCCTTCCTGCAAGAACTaGCACCACACCTTGAGAGCC | + |
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Preference number: 4 (lower is better) Translates to: PLPDCTKPRYQIGALSHQPSCKN*HHTLRA Trigger: GGCTCTCAAGGTGTGGTGCCAGTTCTTGCAGGAAGG...CTGGTGACTCAGGGCTCCAATCTGGTATCTTGGTTTGGTGCAGTCAGGGAGTGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000024792.8 ENSMUST00000224001.2 |
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| CDS-3UTR CCA 90 bp | GACGGTAGACCCAGCACCGGGAAGCAGCAGAAAAGAATTCTTTCCCCAAACACCGGAACTCCAGTGCTCTaGGACGGGCCACAGACAACA | + |
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Preference number: 4 (lower is better) Translates to: DGRPSTGKQQKRILSPNTGTPVL*DGPQTT Trigger: TGTTGTCTGTGGCCCGTCCCAGAGCACTGGAGTTCC...GGTGTTTGGGGAAAGAATTCTTTTCTGCTGCTTCCCGGTGCTGGGTCTACCGTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000024792.8 ENSMUST00000224001.2 |
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| CDS-3UTR CCA 90 bp | CTGGCTCACAGGAGGCTATTTTACCTTTGTCCCCTCCTGGGAAGACAACTGTGGGGAACTCCAGTGCTCTaGGACGGGCCACAGACAACA | + |
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Preference number: 4 (lower is better) Translates to: LAHRRLFYLCPLLGRQLWGTPVL*DGPQTT Trigger: TGTTGTCTGTGGCCCGTCCCAGAGCACTGGAGTTCC...CCACAGTTGTCTTCCCAGGAGGGGACAAAGGTAAAATAGCCTCCTGTGAGCCAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000225849.2 |
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| CDS-3UTR CCA 90 bp | TACCAGATTGGAGCCCTGAGTCACCAGGCGCTGACATACTCTGGGCATAAAAGGCCTTCCTGCAAGAACTaGCACCACACCTTGAGAGCC | + |
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Preference number: 4 (lower is better) Translates to: YQIGALSHQALTYSGHKRPSCKN*HHTLRA Trigger: GGCTCTCAAGGTGTGGTGCCAGTTCTTGCAGGAAGG...CCTTTTATGCCCAGAGTATGTCAGCGCCTGGTGACTCAGGGCTCCAATCTGGTA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000024792.8 ENSMUST00000224001.2 |
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| CDS-3UTR CCA 90 bp | GACGGTAGACCCAGCACCGGGAAGCAGCAGAAAAGAATTCTTTCCCCAAACACCGAGGTCACTAGTGGGTaGCAGCCTTCCTGCAAGAAC | + |
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Preference number: 4 (lower is better) Translates to: DGRPSTGKQQKRILSPNTEVTSG*QPSCKN Trigger: GTTCTTGCAGGAAGGCTGCCACCCACTAGTGACCTC...GGTGTTTGGGGAAAGAATTCTTTTCTGCTGCTTCCCGGTGCTGGGTCTACCGTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000024792.8 ENSMUST00000224001.2 |
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| CDS-3UTR CCA 90 bp | ACAGGAGGCTATTTTACCTTTGTCCCCTCCTGGGAAGACAACTGTGGCATATGTCTGTCAGCTGAGCCTTaGCCTGCTAGTCCCAGGAGC | + |
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Preference number: 4 (lower is better) Translates to: TGGYFTFVPSWEDNCGICLSAEP*PASPRS Trigger: GCTCCTGGGACTAGCAGGCCAAGGCTCAGCTGACAG...ACATATGCCACAGTTGTCTTCCCAGGAGGGGACAAAGGTAAAATAGCCTCCTGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000223956.2 ENSMUST00000225849.2 |
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| CDS-3UTR CCA 90 bp | ATTTACTGGGTGGAGTTTGACTGTTTGGTGGGTCCTGAACTGGCTCACAGGAGGCCTTCCTGCAAGAACTaGCACCACACCTTGAGAGCC | + |
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Preference number: 4 (lower is better) Translates to: IYWVEFDCLVGPELAHRRPSCKN*HHTLRA Trigger: GGCTCTCAAGGTGTGGTGCCAGTTCTTGCAGGAAGG...CCTCCTGTGAGCCAGTTCAGGACCCACCAAACAGTCAAACTCCACCCAGTAAAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000225849.2 |
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| CDS-3UTR CCA 90 bp | ACCAAACCAAGATACCAGATTGGAGCCCTGAGTCACCAGGCGCTGACATACTCTGAGGTCACTAGTGGGTaGCAGCCTTCCTGCAAGAAC | + |
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Preference number: 4 (lower is better) Translates to: TKPRYQIGALSHQALTYSEVTSG*QPSCKN Trigger: GTTCTTGCAGGAAGGCTGCCACCCACTAGTGACCTC...AGAGTATGTCAGCGCCTGGTGACTCAGGGCTCCAATCTGGTATCTTGGTTTGGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000024792.8 ENSMUST00000224001.2 |
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| CDS-3UTR CCA 90 bp | CCGGGCTGCAGAGAATTCCCCAGGGGTGATCCCAAGAGTAATAAATTAAAGTGTTTCCTCCCCCTCTCTTaGGCCAGGGACTGGTGGAAG | + |
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Preference number: 4 (lower is better) Translates to: PGCREFPRGDPKSNKLKCFLPLS*ARDWWK Trigger: CTTCCACCAGTCCCTGGCCCAAGAGAGGGGGAGGAA...ACACTTTAATTTATTACTCTTGGGATCACCCCTGGGGAATTCTCTGCAGCCCGG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000024792.8 ENSMUST00000224001.2 ENSMUST00000225849.2 |
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| CDS-3UTR CCA 90 bp | TTGACTGTTTGGTGGGTCCTGAACTGGCTCACAGGAGGCTATTTTACCTTTGTCTTCCTCCCCCTCTCTTaGGCCAGGGACTTGAGAGCC | + |
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Preference number: 4 (lower is better) Translates to: LTVWWVLNWLTGGYFTFVFLPLS*ARDLRA Trigger: GGCTCTCAAGTCCCTGGCCCAAGAGAGGGGGAGGAA...GACAAAGGTAAAATAGCCTCCTGTGAGCCAGTTCAGGACCCACCAAACAGTCAA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000223956.2 |
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| CDS-3UTR TCA 90 bp | ATGACGGTAGACCCAGCACCGGGAAGCAGCAGAAAAGAATTCTTTCCCCAAACAGGGATACACTGCTTCTaGCACCTGTTCTCACGCCGT | + |
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Preference number: 4 (lower is better) Translates to: MTVDPAPGSSRKEFFPQTGIHCF*HLFSRR Trigger: ACGGCGTGAGAACAGGTGTCAGAAGCAGTGTATCCC...TGTTTGGGGAAAGAATTCTTTTCTGCTGCTTCCCGGTGCTGGGTCTACCGTCAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000224001.2 |
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| CDS-3UTR GCA 90 bp | AGATACCAGATTGGAGCCCTGAGTCACCAGGCGCTGACATACTCTGGGCATAAATTCTTTCTCGTCCTCTaGTTCCTCCCCCTCTCTTGG | + |
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Preference number: 4 (lower is better) Translates to: RYQIGALSHQALTYSGHKFFLVL*FLPLSW Trigger: CCAAGAGAGGGGGAGGAAGCAGAGGACGAGAAAGAA...TTTATGCCCAGAGTATGTCAGCGCCTGGTGACTCAGGGCTCCAATCTGGTATCT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000024792.8 ENSMUST00000224001.2 |
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| CDS-3UTR CCA 90 bp | TTTGACTGTTTGGTGGGTCCTGAACTGGCTCACAGGAGGCTATTTTACCTTTGTTTCCTCCCCCTCTCTTaGGCCAGGGACTGGTGGAAG | + |
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Preference number: 4 (lower is better) Translates to: FDCLVGPELAHRRLFYLCFLPLS*ARDWWK Trigger: CTTCCACCAGTCCCTGGCCCAAGAGAGGGGGAGGAA...ACAAAGGTAAAATAGCCTCCTGTGAGCCAGTTCAGGACCCACCAAACAGTCAAA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000225849.2 |
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| CDS-3UTR CCA 90 bp | GGCTGCAGAGAATTCCCCAGGGGTGATCCCAAGAGTAATAAATTAAAGTGTACTGAGTCACTGCTACGGTaGGCTGCTGAGGGAGGGTCC | + |
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Preference number: 4 (lower is better) Translates to: GCREFPRGDPKSNKLKCTESLLR*AAEGGS Trigger: GGACCCTCCCTCAGCAGCCCACCGTAGCAGTGACTC...AGTACACTTTAATTTATTACTCTTGGGATCACCCCTGGGGAATTCTCTGCAGCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000024792.8 ENSMUST00000224001.2 |
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| CDS-3UTR GCA 90 bp | GGCTGCAGAGAATTCCCCAGGGGTGATCCCAAGAGTAATAAATTAAAGTGTACTGGGTGGCAGCCTTCCTaGAAGAACTGGCACCACACC | + |
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Preference number: 4 (lower is better) Translates to: GCREFPRGDPKSNKLKCTGWQPS*KNWHHT Trigger: GGTGTGGTGCCAGTTCTTGCAGGAAGGCTGCCACCC...AGTACACTTTAATTTATTACTCTTGGGATCACCCCTGGGGAATTCTCTGCAGCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000024792.8 ENSMUST00000224001.2 ENSMUST00000225849.2 |
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| CDS-3UTR GCA 90 bp | CTCACAGGAGGCTATTTTACCTTTGTCCCCTCCTGGGAAGACAACTGTGGCATATTCTTTCTCGTCCTCTaGTTCCTCCCCCTCTCTTGG | + |
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Preference number: 4 (lower is better) Translates to: LTGGYFTFVPSWEDNCGIFFLVL*FLPLSW Trigger: CCAAGAGAGGGGGAGGAAGCAGAGGACGAGAAAGAA...TATGCCACAGTTGTCTTCCCAGGAGGGGACAAAGGTAAAATAGCCTCCTGTGAG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000223956.2 ENSMUST00000225849.2 |
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| CDS-3UTR CCA 90 bp | GGCTGCAGAGAATTCCCCAGGGGTGATCCCAAGAGTAATAAATTAAAGTGTACTCTGTCAGCTGAGCCTTaGCCTGCTAGTCCCAGGAGC | + |
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Preference number: 4 (lower is better) Translates to: GCREFPRGDPKSNKLKCTLSAEP*PASPRS Trigger: GCTCCTGGGACTAGCAGGCCAAGGCTCAGCTGACAG...AGTACACTTTAATTTATTACTCTTGGGATCACCCCTGGGGAATTCTCTGCAGCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000024792.8 ENSMUST00000223956.2 ENSMUST00000224001.2 ENSMUST00000225849.2 |
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| CDS-3UTR CCA 90 bp | TACCAGATTGGAGCCCTGAGTCACCAGGCGCTGACATACTCTGGGCATAAAAGGCTGGGAAGACAACTGTaGCATATGTCACAGACTTGG | + |
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Preference number: 4 (lower is better) Translates to: YQIGALSHQALTYSGHKRLGRQL*HMSQTW Trigger: CCAAGTCTGTGACATATGCCACAGTTGTCTTCCCAG...CCTTTTATGCCCAGAGTATGTCAGCGCCTGGTGACTCAGGGCTCCAATCTGGTA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000024792.8 ENSMUST00000224001.2 |
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| CDS-3UTR CCA 90 bp | AAACCAAGATACCAGATTGGAGCCCTGAGTCACCAGGCGCTGACATACTCTGGGCTGGGAAGACAACTGTaGCATATGTCACAGACTTGG | + |
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Preference number: 4 (lower is better) Translates to: KPRYQIGALSHQALTYSGLGRQL*HMSQTW Trigger: CCAAGTCTGTGACATATGCCACAGTTGTCTTCCCAG...CCCAGAGTATGTCAGCGCCTGGTGACTCAGGGCTCCAATCTGGTATCTTGGTTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000024792.8 ENSMUST00000224001.2 |
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| CDS-3UTR GCA 90 bp | TATCCTCTAGGTTTATTTAGCCAATATGTAATGACGGTAGACCCAGCACCGGGACCTGTGTCCTCCTCCTaGAGGGTCACCATTTCCACC | + |
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Preference number: 4 (lower is better) Translates to: YPLGLFSQYVMTVDPAPGPVSSS*RVTIST Trigger: GGTGGAAATGGTGACCCTGCAGGAGGAGGACACAGG...TCCCGGTGCTGGGTCTACCGTCATTACATATTGGCTAAATAAACCTAGAGGATA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024792.8 |
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| CDS-3UTR CCA 90 bp | CCTGACTGCACCAAACCAAGATACCAGATTGGAGCCCTGAGTCACCAGGCGCTGTGTTCCCTTTCTTTCTaGCCATCACAGCAAATATCA | + |
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Preference number: 4 (lower is better) Translates to: PDCTKPRYQIGALSHQALCSLSF*PSQQIS Trigger: TGATATTTGCTGTGATGGCCAGAAAGAAAGGGAACA...CAGCGCCTGGTGACTCAGGGCTCCAATCTGGTATCTTGGTTTGGTGCAGTCAGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000024792.8 ENSMUST00000224001.2 |
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| CDS-3UTR CCA 90 bp | TATCCTCTAGGTTTATTTAGCCAATATGTAATGACGGTAGACCCAGCACCGGGAGGAACTCCAGTGCTCTaGGACGGGCCACAGACAACA | + |
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Preference number: 4 (lower is better) Translates to: YPLGLFSQYVMTVDPAPGGTPVL*DGPQTT Trigger: TGTTGTCTGTGGCCCGTCCCAGAGCACTGGAGTTCC...TCCCGGTGCTGGGTCTACCGTCATTACATATTGGCTAAATAAACCTAGAGGATA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024792.8 |
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| CDS-3UTR CCA 90 bp | CCCAGGGGTGATCCCAAGAGTAATAAATTAAAGTGTACTCTTATTTACTGGGTGCTGTCAGCTGAGCCTTaGCCTGCTAGTCCCAGGAGC | + |
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Preference number: 4 (lower is better) Translates to: PRGDPKSNKLKCTLIYWVLSAEP*PASPRS Trigger: GCTCCTGGGACTAGCAGGCCAAGGCTCAGCTGACAG...CACCCAGTAAATAAGAGTACACTTTAATTTATTACTCTTGGGATCACCCCTGGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000223956.2 ENSMUST00000225849.2 |
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| CDS-3UTR CCA 90 bp | ACTGGGTGGAGTTTGACTGTTTGGTGGGTCCTGAACTGGCTCACAGGAGGCTATTGTTCCCTTTCTTTCTaGCCATCACAGCAAATATCA | + |
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Preference number: 4 (lower is better) Translates to: TGWSLTVWWVLNWLTGGYCSLSF*PSQQIS Trigger: TGATATTTGCTGTGATGGCCAGAAAGAAAGGGAACA...ATAGCCTCCTGTGAGCCAGTTCAGGACCCACCAAACAGTCAAACTCCACCCAGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000225849.2 |
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| CDS-3UTR CCA 90 bp | AAATTAAAGTGTACTCTTATTTACTGGGTGGAGTTTGACTGTTTGGTGGGTCCTGGCACTGCACTAGAATaGATGACCCCACCGGTGCCT | + |
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Preference number: 4 (lower is better) Translates to: KLKCTLIYWVEFDCLVGPGTALE*MTPPVP Trigger: AGGCACCGGTGGGGTCATCCATTCTAGTGCAGTGCC...AGGACCCACCAAACAGTCAAACTCCACCCAGTAAATAAGAGTACACTTTAATTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000223956.2 ENSMUST00000225849.2 |
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| CDS-3UTR CCA 90 bp | ACCAAACCAAGATACCAGATTGGAGCCCTGAGTCACCAGGCGCTGACATACTCTTGTTCCCTTTCTTTCTaGCCATCACAGCAAATATCA | + |
|
Preference number: 4 (lower is better) Translates to: TKPRYQIGALSHQALTYSCSLSF*PSQQIS Trigger: TGATATTTGCTGTGATGGCCAGAAAGAAAGGGAACA...AGAGTATGTCAGCGCCTGGTGACTCAGGGCTCCAATCTGGTATCTTGGTTTGGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000024792.8 ENSMUST00000224001.2 |
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| CDS-3UTR CCA 90 bp | GGTGATCCCAAGAGTAATAAATTAAAGTGTACTCTTATTTACTGGGTGGAGTTTGAGGTCACTAGTGGGTaGCAGCCTTCCTGCAAGAAC | + |
|
Preference number: 4 (lower is better) Translates to: GDPKSNKLKCTLIYWVEFEVTSG*QPSCKN Trigger: GTTCTTGCAGGAAGGCTGCCACCCACTAGTGACCTC...AAACTCCACCCAGTAAATAAGAGTACACTTTAATTTATTACTCTTGGGATCACC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000225849.2 |
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| CDS CCA 90 bp | CCAGGGACTGGTGGAAGAACCAACAGGGAGACCCTATGCAGGGTCTaGGGTCCTGCCGCTCCCTCCACCACACAACCATACTCCCCTGTG | + |
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Preference number: 5 (lower is better) Translates to: PGTGGRTNRETLCRV*GPAAPSTTQPYSPV Trigger: CACAGGGGAGTATGGTTGTGTGGTGGAGGGAGCGGCAGGACCCCAGACCCTGCATAGGGTCTCCCTGTTGGTTCTTCCACCAGTCCCTGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000024792.8 ENSMUST00000224001.2 ENSMUST00000225849.2 |
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| CDS TCA 90 bp | TGCACTAGAATGGATGACCCCACCGGTGCCTGTAGCACCTCGGGATaGCTGTCAGCTGAGCCTTGGCCTGCTAGTCCCAGGAGCAGCAGC | + |
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Preference number: 5 (lower is better) Translates to: CTRMDDPTGACSTSG*LSAEPWPASPRSSS Trigger: GCTGCTGCTCCTGGGACTAGCAGGCCAAGGCTCAGCTGACAGTCATCCCGAGGTGCTACAGGCACCGGTGGGGTCATCCATTCTAGTGCA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000024792.8 ENSMUST00000223956.2 ENSMUST00000224001.2 ENSMUST00000225849.2 |
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| CDS CCA 90 bp | TTTCTCGTCCTCTGCTTCCTCCCCCTCTCTTGGGCCAGGGACTGGTaGAAGAACCAACAGGGAGACCCTATGCAGGGTCTGGGGTCCTGC | + |
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Preference number: 5 (lower is better) Translates to: FLVLCFLPLSWARDW*KNQQGDPMQGLGSC Trigger: GCAGGACCCCAGACCCTGCATAGGGTCTCCCTGTTGGTTCTTCCACCAGTCCCTGGCCCAAGAGAGGGGGAGGAAGCAGAGGACGAGAAA 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000024792.8 ENSMUST00000224001.2 ENSMUST00000225849.2 |
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| CDS CCA 90 bp | GAGCTGGGGGTTCGCTTGATGGTGGATCAAGAGAGGAGCCATTCCTaGAACTCCAGTGCTCTGGGACGGGCCACAGACAACAAGCCTGTT | + |
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Preference number: 5 (lower is better) Translates to: ELGVRLMVDQERSHS*NSSALGRATDNKPV Trigger: AACAGGCTTGTTGTCTGTGGCCCGTCCCAGAGCACTGGAGTTCCAGGAATGGCTCCTCTCTTGATCCACCATCAAGCGAACCCCCAGCTC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000225849.2 |
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| CDS-3UTR CAA 90 bp | AAACCAAGATACCAGATTGGAGCCCTGAGTCACCAGGCGCTGACATACTCTGGGCTTCCTCCCCCTCTCTaGGGCCAGGGACTGGTGGAA | + |
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Preference number: 5 (lower is better) Translates to: KPRYQIGALSHQALTYSGLPPPL*GQGLVE Trigger: TTCCACCAGTCCCTGGCCCAAGAGAGGGGGAGGAAG...CCCAGAGTATGTCAGCGCCTGGTGACTCAGGGCTCCAATCTGGTATCTTGGTTT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000024792.8 ENSMUST00000224001.2 |
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| CDS-3UTR CAA 90 bp | ACTGGGTGGAGTTTGACTGTTTGGTGGGTCCTGAACTGGCTCACAGGAGGCTATCTTCCTCCCCCTCTCTaGGGCCAGGGACTTGAGAGC | + |
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Preference number: 5 (lower is better) Translates to: TGWSLTVWWVLNWLTGGYLPPPL*GQGLES Trigger: GCTCTCAAGTCCCTGGCCCAAGAGAGGGGGAGGAAG...ATAGCCTCCTGTGAGCCAGTTCAGGACCCACCAAACAGTCAAACTCCACCCAGT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000223956.2 |
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| CDS GCA 90 bp | TCGCTTGATGGTGGATCAAGAGAGGAGCCATTCCTGGAACTCCAGTaGTCTGGGACGGGCCACAGACAACAAGCCTGTTCCCTTTCTTTC | + |
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Preference number: 5 (lower is better) Translates to: SLDGGSREEPFLELQ*SGTGHRQQACSLSF Trigger: GAAAGAAAGGGAACAGGCTTGTTGTCTGTGGCCCGTCCCAGAGCACTGGAGTTCCAGGAATGGCTCCTCTCTTGATCCACCATCAAGCGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000225849.2 |
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| CDS-3UTR CAA 90 bp | TTGACTGTTTGGTGGGTCCTGAACTGGCTCACAGGAGGCTATTTTACCTTTGTCCTTCCTCCCCCTCTCTaGGGCCAGGGACTGGTGGAA | + |
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Preference number: 5 (lower is better) Translates to: LTVWWVLNWLTGGYFTFVLPPPL*GQGLVE Trigger: TTCCACCAGTCCCTGGCCCAAGAGAGGGGGAGGAAG...GACAAAGGTAAAATAGCCTCCTGTGAGCCAGTTCAGGACCCACCAAACAGTCAA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000225849.2 |
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| CDS-3UTR CAA 90 bp | CTCCCTGACTGCACCAAACCAAGATACCAGATTGGAGCCCTGAGTCACCAGGCGGCATATGTCACAGACTaGGAGGACATCAGGACCTTA | + |
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Preference number: 5 (lower is better) Translates to: LPDCTKPRYQIGALSHQAAYVTD*EDIRTL Trigger: TAAGGTCCTGATGTCCTCCAAGTCTGTGACATATGC...CGCCTGGTGACTCAGGGCTCCAATCTGGTATCTTGGTTTGGTGCAGTCAGGGAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000024792.8 ENSMUST00000224001.2 |
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| CDS-3UTR CAA 90 bp | CCACTCCCTGACTGCACCAAACCAAGATACCAGATTGGAGCCCTGAGTCACCAGGAGGCTATTTTACCTTaGTCCCCTCCTGGGAAGACA | + |
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Preference number: 5 (lower is better) Translates to: PLPDCTKPRYQIGALSHQEAILP*SPPGKT Trigger: TGTCTTCCCAGGAGGGGACAAAGGTAAAATAGCCTC...CTGGTGACTCAGGGCTCCAATCTGGTATCTTGGTTTGGTGCAGTCAGGGAGTGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000024792.8 ENSMUST00000224001.2 |
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| CDS-3UTR CAA 90 bp | GGCTGCAGAGAATTCCCCAGGGGTGATCCCAAGAGTAATAAATTAAAGTGTACTGCATATGTCACAGACTaGGAGGACATCAGGACCTTA | + |
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Preference number: 5 (lower is better) Translates to: GCREFPRGDPKSNKLKCTAYVTD*EDIRTL Trigger: TAAGGTCCTGATGTCCTCCAAGTCTGTGACATATGC...AGTACACTTTAATTTATTACTCTTGGGATCACCCCTGGGGAATTCTCTGCAGCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000024792.8 ENSMUST00000224001.2 |
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| CDS GCA 72 bp | CCAGGGACTGGTGGAAGAACCAACAGGGAGACCCTATaGAGGGTCTGGGGTCCTGCCGCTCCCTCCACCACA | + |
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Preference number: 6 (lower is better) Translates to: PGTGGRTNRETL*RVWGPAAPSTT Trigger: TGTGGTGGAGGGAGCGGCAGGACCCCAGACCCTGCATAGGGTCTCCCTGTTGGTTCTTCCACCAGTCCCTGG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000024792.8 ENSMUST00000224001.2 ENSMUST00000225849.2 |
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| CDS TCA 72 bp | GGTGGCAGCCTTCCTGCAAGAACTGGCACCACACCTTaGGAGCCCTCACATCCTGGAGCCGGTAGTGGCACT | + |
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Preference number: 6 (lower is better) Translates to: GGSLPARTGTTP*EPSHPGAGSGT Trigger: AGTGCCACTACCGGCTCCAGGATGTGAGGGCTCTCAAGGTGTGGTGCCAGTTCTTGCAGGAAGGCTGCCACC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000024792.8 ENSMUST00000224001.2 ENSMUST00000225849.2 |
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| CDS TCA 72 bp | CACCCCAGATCAGGGGGATACTGTTCTCACGCCGTCTaGACTCGTGAGGACCAGCACTCGCGGAAGGGTCCA | + |
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Preference number: 6 (lower is better) Translates to: HPRSGGYCSHAV*TREDQHSRKGP Trigger: TGGACCCTTCCGCGAGTGCTGGTCCTCACGAGTTCAGACGGCGTGAGAACAGTATCCCCCTGATCTGGGGTG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000024792.8 ENSMUST00000225849.2 |
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| CDS GCA 72 bp | AACCAACAGGGAGACCCTATGCAGGGTCTGGGGTCCTaGCGCTCCCTCCACCACACAACCATACTCCCCTGT | + |
|
Preference number: 6 (lower is better) Translates to: NQQGDPMQGLGS*RSLHHTTILPC Trigger: ACAGGGGAGTATGGTTGTGTGGTGGAGGGAGCGGCAGGACCCCAGACCCTGCATAGGGTCTCCCTGTTGGTT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000024792.8 ENSMUST00000224001.2 ENSMUST00000225849.2 |
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| CDS CCA 72 bp | GGTGGAAGAACCAACAGGGAGACCCTATGCAGGGTCTaGGGTCCTGCCGCTCCCTCCACCACACAACCATAC | + |
|
Preference number: 6 (lower is better) Translates to: GGRTNRETLCRV*GPAAPSTTQPY Trigger: GTATGGTTGTGTGGTGGAGGGAGCGGCAGGACCCCAGACCCTGCATAGGGTCTCCCTGTTGGTTCTTCCACC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000024792.8 ENSMUST00000224001.2 ENSMUST00000225849.2 |
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| CDS GCA 72 bp | GGTGGATCAAGAGAGGAGCCATTCCTGGAACTCCAGTaGTCTGGGACGGGCCACAGACAACAAGCCTGTTCC | + |
|
Preference number: 6 (lower is better) Translates to: GGSREEPFLELQ*SGTGHRQQACS Trigger: GGAACAGGCTTGTTGTCTGTGGCCCGTCCCAGAGCACTGGAGTTCCAGGAATGGCTCCTCTCTTGATCCACC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000225849.2 |
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| CDS CCA 72 bp | ATCAAGAGAGGAGCCATTCCTGGAACTCCAGTGCTCTaGGACGGGCCACAGACAACAAGCCTGTTCCCTTTC | + |
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Preference number: 6 (lower is better) Translates to: IKRGAIPGTPVL*DGPQTTSLFPF Trigger: GAAAGGGAACAGGCTTGTTGTCTGTGGCCCGTCCCAGAGCACTGGAGTTCCAGGAATGGCTCCTCTCTTGAT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000225849.2 |
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