Pregenerated sensors for TREM2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000023992Ensembl transcript IDs: ENSMUST00000024791.15, ENSMUST00000113237.4
Found 87 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | GATGTACACACCAGTATTCCTGCTCCCAGGATAGGTGGGCTTGAGGCAGAGGCGGGCTGGATTGACTCCTaGCTGGACTTAAGCTGTAGT | + |
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Preference number: 2 (lower is better) Translates to: DVHTSIPAPRIGGLEAEAGWIDS*LDLSCS Trigger: ACTACAGCTTAAGTCCAGCCAGGAGTCAATCCAGCC...CGCCTCTGCCTCAAGCCCACCTATCCTGGGAGCAGGAATACTGGTGTGTACATC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000024791.15 ENSMUST00000113237.4 |
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| 3UTR-3UTR CCA 90 bp | CATCCAGCTGTCTTCCCCACTCAACACAGATGTACACACCAGTATTCCTGCTCCGGCTGGATTGACTCCTaGCTGGACTTAAGCTGTAGT | + |
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Preference number: 2 (lower is better) Translates to: HPAVFPTQHRCTHQYSCSGWIDS*LDLSCS Trigger: ACTACAGCTTAAGTCCAGCCAGGAGTCAATCCAGCC...GGAGCAGGAATACTGGTGTGTACATCTGTGTTGAGTGGGGAAGACAGCTGGATG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000024791.15 ENSMUST00000113237.4 |
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| 3UTR-3UTR CCA 90 bp | TGTGGAGAATGTTTAATGTCCAAAGTGCAGAAGTTGACAGACAACCATCCAGCTAAACAGAAGTCTTGGTaGAGGAGGGGAGAGCATGCA | + |
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Preference number: 2 (lower is better) Translates to: CGECLMSKVQKLTDNHPAKQKSW*RRGEHA Trigger: TGCATGCTCTCCCCTCCTCCACCAAGACTTCTGTTT...AGCTGGATGGTTGTCTGTCAACTTCTGCACTTTGGACATTAAACATTCTCCACA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000024791.15 ENSMUST00000113237.4 |
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| 3UTR CCA 72 bp | CAGAAGTCTTGGTGGAGGAGGGGAGAGCATGCAGGCTaGATTGACTCCTGGCTGGACTTAAGCTGTAGTTCT | + |
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Preference number: 3 (lower is better) Translates to: QKSWWRRGEHAG*IDSWLDLSCSS Trigger: AGAACTACAGCTTAAGTCCAGCCAGGAGTCAATCCAGCCTGCATGCTCTCCCCTCCTCCACCAAGACTTCTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000024791.15 ENSMUST00000113237.4 |
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| CDS-3UTR CCA 90 bp | GTACACACCAGTATTCCTGCTCCCAGGATAGGTGGGCTTGAGGCAGAGGCGGCCGTGCTCACCACACGCTaGCATGGGCCCTCCTCACCC | + |
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Preference number: 4 (lower is better) Translates to: VHTSIPAPRIGGLEAEAAVLTTR*HGPSSP Trigger: GGGTGAGGAGGGCCCATGCCAGCGTGTGGTGAGCAC...GGCCGCCTCTGCCTCAAGCCCACCTATCCTGGGAGCAGGAATACTGGTGTGTAC 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000024791.15 ENSMUST00000113237.4 |
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| CDS-3UTR GCA 90 bp | GCAGGCTGGATTGACTCCTGGCTGGACTTAAGCTGTAGTTCTCCTCCCACTCAGGGTGTTCCCGGCTTCTaGCTGCCCCTGGCCACAGCC | + |
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Preference number: 4 (lower is better) Translates to: AGWIDSWLDLSCSSPPTQGVPGF*LPLATA Trigger: GGCTGTGGCCAGGGGCAGGCAGAAGCCGGGAACACC...CTGAGTGGGAGGAGAACTACAGCTTAAGTCCAGCCAGGAGTCAATCCAGCCTGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024791.15 |
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| CDS-3UTR CCA 90 bp | GATGTACACACCAGTATTCCTGCTCCCAGGATAGGTGGGCTTGAGGCAGAGGCGCACCACACGCTGGCATaGGCCCTCCTCACCCAGCTG | + |
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Preference number: 4 (lower is better) Translates to: DVHTSIPAPRIGGLEAEAHHTLA*ALLTQL Trigger: CAGCTGGGTGAGGAGGGCCCATGCCAGCGTGTGGTG...CGCCTCTGCCTCAAGCCCACCTATCCTGGGAGCAGGAATACTGGTGTGTACATC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000024791.15 ENSMUST00000113237.4 |
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| CDS-3UTR TCA 90 bp | AAGTCTTGGTGGAGGAGGGGAGAGCATGCAGGCTGGATTGACTCCTGGCTGGACACCCTCGAAACTCGATaGCTCCTCGGGGACCCAGAG | + |
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Preference number: 4 (lower is better) Translates to: KSWWRRGEHAGWIDSWLDTLETR*LLGDPE Trigger: CTCTGGGTCCCCGAGGAGTCATCGAGTTTCGAGGGT...GTCCAGCCAGGAGTCAATCCAGCCTGCATGCTCTCCCCTCCTCCACCAAGACTT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000024791.15 ENSMUST00000113237.4 |
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| CDS-3UTR GCA 90 bp | GGTGGGCTTGAGGCAGAGGCGGCCTCTGAAGCAAAAGTAGCAGAAACAGAAGTCCCCTCCTCACCCAGCTaGCGACACCAGGCCTTGCGT | + |
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Preference number: 4 (lower is better) Translates to: GGLEAEAASEAKVAETEVPSSPS*RHQALR Trigger: ACGCAAGGCCTGGTGTCGGCAGCTGGGTGAGGAGGG...GACTTCTGTTTCTGCTACTTTTGCTTCAGAGGCCGCCTCTGCCTCAAGCCCACC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000024791.15 ENSMUST00000113237.4 |
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| CDS-3UTR GCA 90 bp | AAGTCTTGGTGGAGGAGGGGAGAGCATGCAGGCTGGATTGACTCCTGGCTGGACGCCACACACCGTGTGTaGTCACCACACGCTGGCATG | + |
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Preference number: 4 (lower is better) Translates to: KSWWRRGEHAGWIDSWLDATHRV*SPHAGM Trigger: CATGCCAGCGTGTGGTGAGCACACACGGTGTGTGGC...GTCCAGCCAGGAGTCAATCCAGCCTGCATGCTCTCCCCTCCTCCACCAAGACTT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000024791.15 ENSMUST00000113237.4 |
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| CDS-3UTR CCA 90 bp | GAGGCGGCCTCTGAAGCAAAAGTAGCAGAAACAGAAGTCTTGGTGGAGGAGGGGGACACCCTCAAGGACTaGCCGGCCATGCCCTGCAGC | + |
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Preference number: 4 (lower is better) Translates to: EAASEAKVAETEVLVEEGDTLKD*PAMPCS Trigger: GCTGCAGGGCATGGCCGGCCAGTCCTTGAGGGTGTC...CCCCTCCTCCACCAAGACTTCTGTTTCTGCTACTTTTGCTTCAGAGGCCGCCTC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000024791.15 ENSMUST00000113237.4 |
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| CDS-3UTR GCA 90 bp | TCCCCACTCAACACAGATGTACACACCAGTATTCCTGCTCCCAGGATAGGTGGGTGGCCGGCCATGCCCTaGAGCACCGTGGTGTTGAGG | + |
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Preference number: 4 (lower is better) Translates to: SPLNTDVHTSIPAPRIGGWPAMP*STVVLR Trigger: CCTCAACACCACGGTGCTGCAGGGCATGGCCGGCCA...CCCACCTATCCTGGGAGCAGGAATACTGGTGTGTACATCTGTGTTGAGTGGGGA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000024791.15 ENSMUST00000113237.4 |
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| CDS-3UTR GCA 90 bp | GCAGAGGCGGCCTCTGAAGCAAAAGTAGCAGAAACAGAAGTCTTGGTGGAGGAGAGGACTGGCCGGCCATaGCCTGCAGCACCGTGGTGT | + |
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Preference number: 4 (lower is better) Translates to: AEAASEAKVAETEVLVEERTGRP*PAAPWC Trigger: ACACCACGGTGCTGCAGGGCATGGCCGGCCAGTCCT...CTCCTCCACCAAGACTTCTGTTTCTGCTACTTTTGCTTCAGAGGCCGCCTCTGC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000024791.15 ENSMUST00000113237.4 |
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| CDS-3UTR GCA 90 bp | CATCCAGCTGTCTTCCCCACTCAACACAGATGTACACACCAGTATTCCTGCTCCGGTGTTCCCGGCTTCTaGCTGCCCCTGGCCACAGCC | + |
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Preference number: 4 (lower is better) Translates to: HPAVFPTQHRCTHQYSCSGVPGF*LPLATA Trigger: GGCTGTGGCCAGGGGCAGGCAGAAGCCGGGAACACC...GGAGCAGGAATACTGGTGTGTACATCTGTGTTGAGTGGGGAAGACAGCTGGATG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000024791.15 ENSMUST00000113237.4 |
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| CDS-3UTR CCA 90 bp | CCCAGGATAGGTGGGCTTGAGGCAGAGGCGGCCTCTGAAGCAAAAGTAGCAGAATGGTGCCCAGCATCTTaGCCACAGTCCAGCCCTCTG | + |
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Preference number: 4 (lower is better) Translates to: PRIGGLEAEAASEAKVAEWCPAS*PQSSPL Trigger: CAGAGGGCTGGACTGTGGCCAAGATGCTGGGCACCA...TTCTGCTACTTTTGCTTCAGAGGCCGCCTCTGCCTCAAGCCCACCTATCCTGGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000024791.15 ENSMUST00000113237.4 |
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| CDS-3UTR TCA 90 bp | CCAGCTGTCTTCCCCACTCAACACAGATGTACACACCAGTATTCCTGCTCCCAGCACAGTCCAGCCCTCTaGCCACAGGTGTTCCCGGCT | + |
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Preference number: 4 (lower is better) Translates to: PAVFPTQHRCTHQYSCSQHSPAL*PQVFPA Trigger: AGCCGGGAACACCTGTGGTCAGAGGGCTGGACTGTG...CTGGGAGCAGGAATACTGGTGTGTACATCTGTGTTGAGTGGGGAAGACAGCTGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000024791.15 ENSMUST00000113237.4 |
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| CDS-3UTR GCA 90 bp | TCCAGCTGTCTTCCCCACTCAACACAGATGTACACACCAGTATTCCTGCTCCCAAGGACTGGCCGGCCATaGCCTGCAGCACCGTGGTGT | + |
|
Preference number: 4 (lower is better) Translates to: SSCLPHSTQMYTPVFLLPRTGRP*PAAPWC Trigger: ACACCACGGTGCTGCAGGGCATGGCCGGCCAGTCCT...TGGGAGCAGGAATACTGGTGTGTACATCTGTGTTGAGTGGGGAAGACAGCTGGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000024791.15 ENSMUST00000113237.4 |
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| CDS-3UTR GCA 90 bp | GAGCATGCAGGCTGGATTGACTCCTGGCTGGACTTAAGCTGTAGTTCTCCTCCCGCCACACACCGTGTGTaGTCACCACACGCTGGCATG | + |
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Preference number: 4 (lower is better) Translates to: EHAGWIDSWLDLSCSSPPATHRV*SPHAGM Trigger: CATGCCAGCGTGTGGTGAGCACACACGGTGTGTGGC...GGGAGGAGAACTACAGCTTAAGTCCAGCCAGGAGTCAATCCAGCCTGCATGCTC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000024791.15 ENSMUST00000113237.4 |
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| CDS-3UTR GCA 90 bp | CACACCAGTATTCCTGCTCCCAGGATAGGTGGGCTTGAGGCAGAGGCGGCCTCTCTTGATTCCTGGAGGTaGTGTGTTCCACTTGGGCAC | + |
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Preference number: 4 (lower is better) Translates to: HTSIPAPRIGGLEAEAASLDSWR*CVPLGH Trigger: GTGCCCAAGTGGAACACAGCACCTCCAGGAATCAAG...AGAGGCCGCCTCTGCCTCAAGCCCACCTATCCTGGGAGCAGGAATACTGGTGTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024791.15 |
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| CDS-3UTR CCA 90 bp | TCCAGCTGTCTTCCCCACTCAACACAGATGTACACACCAGTATTCCTGCTCCCAGTGCTCACCACACGCTaGCATGGGCCCTCCTCACCC | + |
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Preference number: 4 (lower is better) Translates to: SSCLPHSTQMYTPVFLLPVLTTR*HGPSSP Trigger: GGGTGAGGAGGGCCCATGCCAGCGTGTGGTGAGCAC...TGGGAGCAGGAATACTGGTGTGTACATCTGTGTTGAGTGGGGAAGACAGCTGGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000024791.15 ENSMUST00000113237.4 |
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| CDS-3UTR TCA 90 bp | CCAGCTGTCTTCCCCACTCAACACAGATGTACACACCAGTATTCCTGCTCCCAGGGGTGTCATCTGCGATaGCTGTGCTCCCATTCCGCT | + |
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Preference number: 4 (lower is better) Translates to: PAVFPTQHRCTHQYSCSQGCHLR*LCSHSA Trigger: AGCGGAATGGGAGCACAGTCATCGCAGATGACACCC...CTGGGAGCAGGAATACTGGTGTGTACATCTGTGTTGAGTGGGGAAGACAGCTGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000024791.15 ENSMUST00000113237.4 |
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| CDS-3UTR TCA 90 bp | TCCCCACTCAACACAGATGTACACACCAGTATTCCTGCTCCCAGGATAGGTGGGGGGTGTCATCTGCGATaGCTGTGCTCCCATTCCGCT | + |
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Preference number: 4 (lower is better) Translates to: SPLNTDVHTSIPAPRIGGGCHLR*LCSHSA Trigger: AGCGGAATGGGAGCACAGTCATCGCAGATGACACCC...CCCACCTATCCTGGGAGCAGGAATACTGGTGTGTACATCTGTGTTGAGTGGGGA 56% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000024791.15 ENSMUST00000113237.4 |
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| CDS-3UTR TCA 90 bp | GTCCAAAGTGCAGAAGTTGACAGACAACCATCCAGCTGTCTTCCCCACTCAACACACAGTCCAGCCCTCTaGCCACAGGTGTTCCCGGCT | + |
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Preference number: 4 (lower is better) Translates to: VQSAEVDRQPSSCLPHSTHSPAL*PQVFPA Trigger: AGCCGGGAACACCTGTGGTCAGAGGGCTGGACTGTG...TGTTGAGTGGGGAAGACAGCTGGATGGTTGTCTGTCAACTTCTGCACTTTGGAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000024791.15 ENSMUST00000113237.4 |
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| CDS-3UTR TCA 90 bp | GAGGCAGAGGCGGCCTCTGAAGCAAAAGTAGCAGAAACAGAAGTCTTGGTGGAGTACCTCCGGGTCCAGTaGGGATCTGAAGTTGGTGCC | + |
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Preference number: 4 (lower is better) Translates to: EAEAASEAKVAETEVLVEYLRVQ*GSEVGA Trigger: GGCACCAACTTCAGATCCTCACTGGACCCGGAGGTA...CTCCACCAAGACTTCTGTTTCTGCTACTTTTGCTTCAGAGGCCGCCTCTGCCTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000024791.15 ENSMUST00000113237.4 |
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| CDS-3UTR GCA 90 bp | ATGTCCAAAGTGCAGAAGTTGACAGACAACCATCCAGCTGTCTTCCCCACTCAATGGCCGGCCATGCCCTaGAGCACCGTGGTGTTGAGG | + |
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Preference number: 4 (lower is better) Translates to: MSKVQKLTDNHPAVFPTQWPAMP*STVVLR Trigger: CCTCAACACCACGGTGCTGCAGGGCATGGCCGGCCA...TTGAGTGGGGAAGACAGCTGGATGGTTGTCTGTCAACTTCTGCACTTTGGACAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000024791.15 ENSMUST00000113237.4 |
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| CDS-3UTR GCA 90 bp | GAGCATGCAGGCTGGATTGACTCCTGGCTGGACTTAAGCTGTAGTTCTCCTCCCTCCACCAGTACTTTCTaGAGGACCTCAGCCTCTCGG | + |
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Preference number: 4 (lower is better) Translates to: EHAGWIDSWLDLSCSSPPSTSTF*RTSASR Trigger: CCGAGAGGCTGAGGTCCTGCAGAAAGTACTGGTGGA...GGGAGGAGAACTACAGCTTAAGTCCAGCCAGGAGTCAATCCAGCCTGCATGCTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000024791.15 ENSMUST00000113237.4 |
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| CDS-3UTR CCA 90 bp | ACCAGTATTCCTGCTCCCAGGATAGGTGGGCTTGAGGCAGAGGCGGCCTCTGAAAGATCTCCAGCATCTTaGTCATCTAGAGGGTCCTCC | + |
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Preference number: 4 (lower is better) Translates to: TSIPAPRIGGLEAEAASERSPAS*SSRGSS Trigger: GGAGGACCCTCTAGATGACCAAGATGCTGGAGATCT...TTCAGAGGCCGCCTCTGCCTCAAGCCCACCTATCCTGGGAGCAGGAATACTGGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000024791.15 ENSMUST00000113237.4 |
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| CDS-3UTR CCA 90 bp | GTACACACCAGTATTCCTGCTCCCAGGATAGGTGGGCTTGAGGCAGAGGCGGCCAGGTCTCTTGATTCCTaGAGGTGCTGTGTTCCACTT | + |
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Preference number: 4 (lower is better) Translates to: VHTSIPAPRIGGLEAEAARSLDS*RCCVPL Trigger: AAGTGGAACACAGCACCTCCAGGAATCAAGAGACCT...GGCCGCCTCTGCCTCAAGCCCACCTATCCTGGGAGCAGGAATACTGGTGTGTAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024791.15 |
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| CDS-3UTR CCA 90 bp | GTACACACCAGTATTCCTGCTCCCAGGATAGGTGGGCTTGAGGCAGAGGCGGCCAAGAATGGAGGTGGGTaGGAAGGAGGTCTCTTGATT | + |
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Preference number: 4 (lower is better) Translates to: VHTSIPAPRIGGLEAEAAKNGGG*EGGLLI Trigger: AATCAAGAGACCTCCTTCCCACCCACCTCCATTCTT...GGCCGCCTCTGCCTCAAGCCCACCTATCCTGGGAGCAGGAATACTGGTGTGTAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000024791.15 ENSMUST00000113237.4 |
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| CDS-3UTR CCA 90 bp | TTCCCCACTCAACACAGATGTACACACCAGTATTCCTGCTCCCAGGATAGGTGGTGGTGCCCAGCATCTTaGCCACAGTCCAGCCCTCTG | + |
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Preference number: 4 (lower is better) Translates to: FPTQHRCTHQYSCSQDRWWCPAS*PQSSPL Trigger: CAGAGGGCTGGACTGTGGCCAAGATGCTGGGCACCA...CCACCTATCCTGGGAGCAGGAATACTGGTGTGTACATCTGTGTTGAGTGGGGAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000024791.15 ENSMUST00000113237.4 |
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| CDS-3UTR TCA 90 bp | TCCCCACTCAACACAGATGTACACACCAGTATTCCTGCTCCCAGGATAGGTGGGCTTGGGACAGGGCTGTaGTCAGCAGCAGGAGAAACT | + |
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Preference number: 4 (lower is better) Translates to: SPLNTDVHTSIPAPRIGGLGTGL*SAAGET Trigger: AGTTTCTCCTGCTGCTGATCACAGCCCTGTCCCAAG...CCCACCTATCCTGGGAGCAGGAATACTGGTGTGTACATCTGTGTTGAGTGGGGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000024791.15 ENSMUST00000113237.4 |
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| CDS-3UTR TCA 90 bp | TCCCCACTCAACACAGATGTACACACCAGTATTCCTGCTCCCAGGATAGGTGGGGGGAAGGAGGTCTCTTaGTTCCTGGAGGTGCTGTGT | + |
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Preference number: 4 (lower is better) Translates to: SPLNTDVHTSIPAPRIGGGKEVS*FLEVLC Trigger: ACACAGCACCTCCAGGAATCAAGAGACCTCCTTCCC...CCCACCTATCCTGGGAGCAGGAATACTGGTGTGTACATCTGTGTTGAGTGGGGA 54% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000024791.15 |
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| CDS-3UTR GCA 90 bp | TTAATGTCCAAAGTGCAGAAGTTGACAGACAACCATCCAGCTGTCTTCCCCACTCCCTCCTCACCCAGCTaGCGACACCAGGCCTTGCGT | + |
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Preference number: 4 (lower is better) Translates to: LMSKVQKLTDNHPAVFPTPSSPS*RHQALR Trigger: ACGCAAGGCCTGGTGTCGGCAGCTGGGTGAGGAGGG...AGTGGGGAAGACAGCTGGATGGTTGTCTGTCAACTTCTGCACTTTGGACATTAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000024791.15 ENSMUST00000113237.4 |
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| CDS-3UTR GCA 90 bp | GGGCTTGAGGCAGAGGCGGCCTCTGAAGCAAAAGTAGCAGAAACAGAAGTCTTGTCCACCAGTACTTTCTaGAGGACCTCAGCCTCTCGG | + |
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Preference number: 4 (lower is better) Translates to: GLEAEAASEAKVAETEVLSTSTF*RTSASR Trigger: CCGAGAGGCTGAGGTCCTGCAGAAAGTACTGGTGGA...CAAGACTTCTGTTTCTGCTACTTTTGCTTCAGAGGCCGCCTCTGCCTCAAGCCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000024791.15 ENSMUST00000113237.4 |
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| CDS-3UTR GCA 90 bp | GGTGGGCTTGAGGCAGAGGCGGCCTCTGAAGCAAAAGTAGCAGAAACAGAAGTCCCAGAGGATGCTGGCTaGAAGAAACTTGCTCAGGAG | + |
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Preference number: 4 (lower is better) Translates to: GGLEAEAASEAKVAETEVPEDAG*KKLAQE Trigger: CTCCTGAGCAAGTTTCTTGCAGCCAGCATCCTCTGG...GACTTCTGTTTCTGCTACTTTTGCTTCAGAGGCCGCCTCTGCCTCAAGCCCACC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000024791.15 ENSMUST00000113237.4 |
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| CDS-3UTR GCA 90 bp | TCCCCACTCAACACAGATGTACACACCAGTATTCCTGCTCCCAGGATAGGTGGGCCACAGGATGAAACCTaGCTGGAGGTGCTGTGTTCC | + |
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Preference number: 4 (lower is better) Translates to: SPLNTDVHTSIPAPRIGGPQDET*LEVLCS Trigger: GGAACACAGCACCTCCAGGCAGGTTTCATCCTGTGG...CCCACCTATCCTGGGAGCAGGAATACTGGTGTGTACATCTGTGTTGAGTGGGGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000113237.4 |
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| CDS-3UTR CCA 90 bp | GAGCATGCAGGCTGGATTGACTCCTGGCTGGACTTAAGCTGTAGTTCTCCTCCCGTGCTGTGTTCCACTTaGGCACCCTCGAAACTCGAT | + |
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Preference number: 4 (lower is better) Translates to: EHAGWIDSWLDLSCSSPPVLCST*APSKLD Trigger: ATCGAGTTTCGAGGGTGCCCAAGTGGAACACAGCAC...GGGAGGAGAACTACAGCTTAAGTCCAGCCAGGAGTCAATCCAGCCTGCATGCTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000024791.15 ENSMUST00000113237.4 |
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| CDS-3UTR GCA 90 bp | CCATCCAGCTGTCTTCCCCACTCAACACAGATGTACACACCAGTATTCCTGCTCCCAGAGGATGCTGGCTaGAAGAAACTTGCTCAGGAG | + |
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Preference number: 4 (lower is better) Translates to: PSSCLPHSTQMYTPVFLLPEDAG*KKLAQE Trigger: CTCCTGAGCAAGTTTCTTGCAGCCAGCATCCTCTGG...GAGCAGGAATACTGGTGTGTACATCTGTGTTGAGTGGGGAAGACAGCTGGATGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000024791.15 ENSMUST00000113237.4 |
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| CDS-3UTR CCA 90 bp | CATCCAGCTGTCTTCCCCACTCAACACAGATGTACACACCAGTATTCCTGCTCCCAGCCCAGAGGATGCTaGCTGCAAGAAACTTGCTCA | + |
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Preference number: 4 (lower is better) Translates to: HPAVFPTQHRCTHQYSCSQPRGC*LQETCS Trigger: TGAGCAAGTTTCTTGCAGCCAGCATCCTCTGGGCTG...GGAGCAGGAATACTGGTGTGTACATCTGTGTTGAGTGGGGAAGACAGCTGGATG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000024791.15 ENSMUST00000113237.4 |
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| CDS-3UTR TCA 90 bp | ACAACCATCCAGCTGTCTTCCCCACTCAACACAGATGTACACACCAGTATTCCTCTTGGGACAGGGCTGTaGTCAGCAGCAGGAGAAACT | + |
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Preference number: 4 (lower is better) Translates to: TTIQLSSPLNTDVHTSIPLGTGL*SAAGET Trigger: AGTTTCTCCTGCTGCTGATCACAGCCCTGTCCCAAG...AGGAATACTGGTGTGTACATCTGTGTTGAGTGGGGAAGACAGCTGGATGGTTGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000024791.15 ENSMUST00000113237.4 |
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| CDS-3UTR TCA 90 bp | ACAACCATCCAGCTGTCTTCCCCACTCAACACAGATGTACACACCAGTATTCCTGGTCCAGTGAGGATCTaGAGTTGGTGCCCAGCATCT | + |
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Preference number: 4 (lower is better) Translates to: TTIQLSSPLNTDVHTSIPGPVRI*SWCPAS Trigger: AGATGCTGGGCACCAACTTCAGATCCTCACTGGACC...AGGAATACTGGTGTGTACATCTGTGTTGAGTGGGGAAGACAGCTGGATGGTTGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000024791.15 ENSMUST00000113237.4 |
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| CDS-3UTR TCA 90 bp | ATGTCCAAAGTGCAGAAGTTGACAGACAACCATCCAGCTGTCTTCCCCACTCAAGGTCCAGTGAGGATCTaGAGTTGGTGCCCAGCATCT | + |
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Preference number: 4 (lower is better) Translates to: MSKVQKLTDNHPAVFPTQGPVRI*SWCPAS Trigger: AGATGCTGGGCACCAACTTCAGATCCTCACTGGACC...TTGAGTGGGGAAGACAGCTGGATGGTTGTCTGTCAACTTCTGCACTTTGGACAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000024791.15 ENSMUST00000113237.4 |
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| CDS-3UTR GCA 90 bp | TGGAGAATGTTTAATGTCCAAAGTGCAGAAGTTGACAGACAACCATCCAGCTGTGCCGACACCAGGCCTTaGGTCTCCCCCAGTGCTTCA | + |
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Preference number: 4 (lower is better) Translates to: WRMFNVQSAEVDRQPSSCADTRP*VSPSAS Trigger: TGAAGCACTGGGGGAGACGCAAGGCCTGGTGTCGGC...ACAGCTGGATGGTTGTCTGTCAACTTCTGCACTTTGGACATTAAACATTCTCCA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000024791.15 ENSMUST00000113237.4 |
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| CDS-3UTR CCA 90 bp | GAGGCAGAGGCGGCCTCTGAAGCAAAAGTAGCAGAAACAGAAGTCTTGGTGGAGGGTCTCTTGATTCCTTaGAAAGAGGAGGAAGGTGGT | + |
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Preference number: 4 (lower is better) Translates to: EAEAASEAKVAETEVLVEGLLIP*KEEEGG Trigger: ACCACCTTCCTCCTCTTTCCAAGGAATCAAGAGACC...CTCCACCAAGACTTCTGTTTCTGCTACTTTTGCTTCAGAGGCCGCCTCTGCCTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000113237.4 |
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| CDS-3UTR CCA 90 bp | TTAATGTCCAAAGTGCAGAAGTTGACAGACAACCATCCAGCTGTCTTCCCCACTGTGCTGTGTTCCACTTaGGCACCCTCGAAACTCGAT | + |
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Preference number: 4 (lower is better) Translates to: LMSKVQKLTDNHPAVFPTVLCST*APSKLD Trigger: ATCGAGTTTCGAGGGTGCCCAAGTGGAACACAGCAC...AGTGGGGAAGACAGCTGGATGGTTGTCTGTCAACTTCTGCACTTTGGACATTAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000024791.15 ENSMUST00000113237.4 |
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| CDS-3UTR CCA 90 bp | TCCAAAGTGCAGAAGTTGACAGACAACCATCCAGCTGTCTTCCCCACTCAACACAAGAATGGAGGTGGGTaGGAAGGAGGTCTCTTGATT | + |
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Preference number: 4 (lower is better) Translates to: SKVQKLTDNHPAVFPTQHKNGGG*EGGLLI Trigger: AATCAAGAGACCTCCTTCCCACCCACCTCCATTCTT...GTGTTGAGTGGGGAAGACAGCTGGATGGTTGTCTGTCAACTTCTGCACTTTGGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000024791.15 ENSMUST00000113237.4 |
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| CDS-3UTR CCA 90 bp | TTAATGTCCAAAGTGCAGAAGTTGACAGACAACCATCCAGCTGTCTTCCCCACTCAGCCCAGAGGATGCTaGCTGCAAGAAACTTGCTCA | + |
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Preference number: 4 (lower is better) Translates to: LMSKVQKLTDNHPAVFPTQPRGC*LQETCS Trigger: TGAGCAAGTTTCTTGCAGCCAGCATCCTCTGGGCTG...AGTGGGGAAGACAGCTGGATGGTTGTCTGTCAACTTCTGCACTTTGGACATTAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000024791.15 ENSMUST00000113237.4 |
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| CDS-3UTR CCA 90 bp | ATGTCCAAAGTGCAGAAGTTGACAGACAACCATCCAGCTGTCTTCCCCACTCAAAGGATGAAACCTGCCTaGAGGTGCTGTGTTCCACTT | + |
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Preference number: 4 (lower is better) Translates to: MSKVQKLTDNHPAVFPTQRMKPA*RCCVPL Trigger: AAGTGGAACACAGCACCTCCAGGCAGGTTTCATCCT...TTGAGTGGGGAAGACAGCTGGATGGTTGTCTGTCAACTTCTGCACTTTGGACAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000113237.4 |
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| 3UTR CAA 72 bp | GTGTGTGGAGAATGTTTAATGTCCAAAGTGCAGAAGTaGACAGACAACCATCCAGCTGTCTTCCCCACTCAA | + |
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Preference number: 4 (lower is better) Translates to: VCGECLMSKVQK*TDNHPAVFPTQ Trigger: TTGAGTGGGGAAGACAGCTGGATGGTTGTCTGTCAACTTCTGCACTTTGGACATTAAACATTCTCCACACAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000024791.15 ENSMUST00000113237.4 |
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| CDS GCA 90 bp | CCGTGTGTGCTCACCACACGCTGGCATGGGCCCTCCTCACCCAGCTaGCGACACCAGGCCTTGCGTCTCCCCCAGTGCTTCAAGGCGTCA | + |
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Preference number: 5 (lower is better) Translates to: PCVLTTRWHGPSSPS*RHQALRLPQCFKAS Trigger: TGACGCCTTGAAGCACTGGGGGAGACGCAAGGCCTGGTGTCGGCAGCTGGGTGAGGAGGGCCCATGCCAGCGTGTGGTGAGCACACACGG 67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000024791.15 ENSMUST00000113237.4 |
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| CDS TCA 90 bp | GGATCTGAAGTTGGTGCCCAGCATCTTGGCCACAGTCCAGCCCTCTaGCCACAGGTGTTCCCGGCTTCTGCCTGCCCCTGGCCACAGCCC | + |
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Preference number: 5 (lower is better) Translates to: GSEVGAQHLGHSPAL*PQVFPASACPWPQP Trigger: GGGCTGTGGCCAGGGGCAGGCAGAAGCCGGGAACACCTGTGGTCAGAGGGCTGGACTGTGGCCAAGATGCTGGGCACCAACTTCAGATCC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000024791.15 ENSMUST00000113237.4 |
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| CDS GCA 90 bp | CACGCTGGCATGGGCCCTCCTCACCCAGCTGCCGACACCAGGCCTTaGGTCTCCCCCAGTGCTTCAAGGCGTCATAAGTACATGACACCC | + |
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Preference number: 5 (lower is better) Translates to: HAGMGPPHPAADTRP*VSPSASRRHKYMTP Trigger: GGGTGTCATGTACTTATGACGCCTTGAAGCACTGGGGGAGACGCAAGGCCTGGTGTCGGCAGCTGGGTGAGGAGGGCCCATGCCAGCGTG 63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000024791.15 ENSMUST00000113237.4 |
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| CDS TCA 90 bp | CCAGGCCTTGCGTCTCCCCCAGTGCTTCAAGGCGTCATAAGTACATaGCACCCTCAAGGACTGGCCGGCCATGCCCTGCAGCACCGTGGT | + |
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Preference number: 5 (lower is better) Translates to: PGLASPPVLQGVIST*HPQGLAGHALQHRG Trigger: ACCACGGTGCTGCAGGGCATGGCCGGCCAGTCCTTGAGGGTGTCATGTACTTATGACGCCTTGAAGCACTGGGGGAGACGCAAGGCCTGG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000024791.15 ENSMUST00000113237.4 |
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| CDS GCA 90 bp | GCCTGCCCCTGGCCACAGCCCAGAGGATGCTGGCTGCAAGAAACTTaGTCAGGAGAACGCAGGCCAGGAGGAGAAGAATGGAGGTGGGTG | + |
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Preference number: 5 (lower is better) Translates to: ACPWPQPRGCWLQET*SGERRPGGEEWRWV Trigger: CACCCACCTCCATTCTTCTCCTCCTGGCCTGCGTTCTCCTGAGCAAGTTTCTTGCAGCCAGCATCCTCTGGGCTGTGGCCAGGGGCAGGC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000024791.15 ENSMUST00000113237.4 |
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| CDS CCA 90 bp | AAGGACTGGCCGGCCATGCCCTGCAGCACCGTGGTGTTGAGGGCTTaGGACAGGGCTGTGATCAGCAGCAGGAGAAACTGGTGGAGAGGT | + |
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Preference number: 5 (lower is better) Translates to: KDWPAMPCSTVVLRA*DRAVISSRRNWWRG Trigger: ACCTCTCCACCAGTTTCTCCTGCTGCTGATCACAGCCCTGTCCCAAGCCCTCAACACCACGGTGCTGCAGGGCATGGCCGGCCAGTCCTT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000024791.15 ENSMUST00000113237.4 |
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| CDS-3UTR CAA 90 bp | AAGTCTTGGTGGAGGAGGGGAGAGCATGCAGGCTGGATTGACTCCTGGCTGGACTGCAGCACCGTGGTGTaGAGGGCTTGGGACAGGGCT | + |
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Preference number: 5 (lower is better) Translates to: KSWWRRGEHAGWIDSWLDCSTVV*RAWDRA Trigger: AGCCCTGTCCCAAGCCCTCAACACCACGGTGCTGCA...GTCCAGCCAGGAGTCAATCCAGCCTGCATGCTCTCCCCTCCTCCACCAAGACTT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000024791.15 ENSMUST00000113237.4 |
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| CDS CCA 90 bp | GGTGACCCACAGGATGAAACCTGCCTGGAGGTGCTGTGTTCCACTTaGGCACCCTCGAAACTCGATGACTCCTCGGGGACCCAGAGATCT | + |
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Preference number: 5 (lower is better) Translates to: GDPQDETCLEVLCST*APSKLDDSSGTQRS Trigger: AGATCTCTGGGTCCCCGAGGAGTCATCGAGTTTCGAGGGTGCCCAAGTGGAACACAGCACCTCCAGGCAGGTTTCATCCTGTGGGTCACC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000113237.4 |
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| CDS-3UTR CAA 90 bp | AAGTCTTGGTGGAGGAGGGGAGAGCATGCAGGCTGGATTGACTCCTGGCTGGACGGTGCTGTGTTCCACTaGGGCACCCTCGAAACTCGA | + |
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Preference number: 5 (lower is better) Translates to: KSWWRRGEHAGWIDSWLDGAVFH*GTLETR Trigger: TCGAGTTTCGAGGGTGCCCAAGTGGAACACAGCACC...GTCCAGCCAGGAGTCAATCCAGCCTGCATGCTCTCCCCTCCTCCACCAAGACTT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000024791.15 ENSMUST00000113237.4 |
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| CDS-3UTR CAA 90 bp | GATGTACACACCAGTATTCCTGCTCCCAGGATAGGTGGGCTTGAGGCAGAGGCGTTGGTGCCCAGCATCTaGGCCACAGTCCAGCCCTCT | + |
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Preference number: 5 (lower is better) Translates to: DVHTSIPAPRIGGLEAEALVPSI*ATVQPS Trigger: AGAGGGCTGGACTGTGGCCAAGATGCTGGGCACCAA...CGCCTCTGCCTCAAGCCCACCTATCCTGGGAGCAGGAATACTGGTGTGTACATC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000024791.15 ENSMUST00000113237.4 |
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| CDS-3UTR CAA 90 bp | CCAGCTGTCTTCCCCACTCAACACAGATGTACACACCAGTATTCCTGCTCCCAGTGCAGCACCGTGGTGTaGAGGGCTTGGGACAGGGCT | + |
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Preference number: 5 (lower is better) Translates to: PAVFPTQHRCTHQYSCSQCSTVV*RAWDRA Trigger: AGCCCTGTCCCAAGCCCTCAACACCACGGTGCTGCA...CTGGGAGCAGGAATACTGGTGTGTACATCTGTGTTGAGTGGGGAAGACAGCTGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000024791.15 ENSMUST00000113237.4 |
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| CDS CCA 90 bp | GAGGAAGGTGGTAGGCTAGAGGTGACCCACAGGATGAAACCTGCCTaGAGGTGCTGTGTTCCACTTGGGCACCCTCGAAACTCGATGACT | + |
|
Preference number: 5 (lower is better) Translates to: EEGGRLEVTHRMKPA*RCCVPLGHPRNSMT Trigger: AGTCATCGAGTTTCGAGGGTGCCCAAGTGGAACACAGCACCTCCAGGCAGGTTTCATCCTGTGGGTCACCTCTAGCCTACCACCTTCCTC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000113237.4 |
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| CDS-3UTR CAA 90 bp | GAGGCAGAGGCGGCCTCTGAAGCAAAAGTAGCAGAAACAGAAGTCTTGGTGGAGCGTGGTGTTGAGGGCTaGGGACAGGGCTGTGATCAG | + |
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Preference number: 5 (lower is better) Translates to: EAEAASEAKVAETEVLVERGVEG*GQGCDQ Trigger: CTGATCACAGCCCTGTCCCAAGCCCTCAACACCACG...CTCCACCAAGACTTCTGTTTCTGCTACTTTTGCTTCAGAGGCCGCCTCTGCCTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000024791.15 ENSMUST00000113237.4 |
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| CDS-3UTR CAA 90 bp | GCAGAGGCGGCCTCTGAAGCAAAAGTAGCAGAAACAGAAGTCTTGGTGGAGGAGCGTGGTGTTGAGGGCTaGGGACAGGGCTGTGATCAG | + |
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Preference number: 5 (lower is better) Translates to: AEAASEAKVAETEVLVEERGVEG*GQGCDQ Trigger: CTGATCACAGCCCTGTCCCAAGCCCTCAACACCACG...CTCCTCCACCAAGACTTCTGTTTCTGCTACTTTTGCTTCAGAGGCCGCCTCTGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000024791.15 ENSMUST00000113237.4 |
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| CDS GCA 90 bp | GAGGTTCTTCAGAGTGATGGTGACGGTTCCAGCAAGGGTGTCATCTaGGATGACTGTGCTCCCATTCCGCTTCTTCAGGAAGGCCAGCAG | + |
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Preference number: 5 (lower is better) Translates to: EVLQSDGDGSSKGVI*DDCAPIPLLQEGQQ Trigger: CTGCTGGCCTTCCTGAAGAAGCGGAATGGGAGCACAGTCATCGCAGATGACACCCTTGCTGGAACCGTCACCATCACTCTGAAGAACCTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000024791.15 ENSMUST00000113237.4 |
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| CDS CCA 90 bp | TCGAAACTCGATGACTCCTCGGGGACCCAGAGATCTCCAGCATCTTaGTCATCTAGAGGGTCCTCCAGCACCTCCACCAGTACTTTCTGC | + |
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Preference number: 5 (lower is better) Translates to: SKLDDSSGTQRSPAS*SSRGSSSTSTSTFC Trigger: GCAGAAAGTACTGGTGGAGGTGCTGGAGGACCCTCTAGATGACCAAGATGCTGGAGATCTCTGGGTCCCCGAGGAGTCATCGAGTTTCGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000024791.15 ENSMUST00000113237.4 |
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| CDS-3UTR CAA 90 bp | CAGCTGTCTTCCCCACTCAACACAGATGTACACACCAGTATTCCTGCTCCCAGGCTGGCTGCAAGAAACTaGCTCAGGAGAACGCAGGCC | + |
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Preference number: 5 (lower is better) Translates to: QLSSPLNTDVHTSIPAPRLAARN*LRRTQA Trigger: GGCCTGCGTTCTCCTGAGCAAGTTTCTTGCAGCCAG...CCTGGGAGCAGGAATACTGGTGTGTACATCTGTGTTGAGTGGGGAAGACAGCTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000024791.15 ENSMUST00000113237.4 |
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| CDS-3UTR CAA 90 bp | TTCCCCACTCAACACAGATGTACACACCAGTATTCCTGCTCCCAGGATAGGTGGCTGGCTGCAAGAAACTaGCTCAGGAGAACGCAGGCC | + |
|
Preference number: 5 (lower is better) Translates to: FPTQHRCTHQYSCSQDRWLAARN*LRRTQA Trigger: GGCCTGCGTTCTCCTGAGCAAGTTTCTTGCAGCCAG...CCACCTATCCTGGGAGCAGGAATACTGGTGTGTACATCTGTGTTGAGTGGGGAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000024791.15 ENSMUST00000113237.4 |
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| CDS-3UTR CAA 90 bp | ATGTCCAAAGTGCAGAAGTTGACAGACAACCATCCAGCTGTCTTCCCCACTCAATTGGTGCCCAGCATCTaGGCCACAGTCCAGCCCTCT | + |
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Preference number: 5 (lower is better) Translates to: MSKVQKLTDNHPAVFPTQLVPSI*ATVQPS Trigger: AGAGGGCTGGACTGTGGCCAAGATGCTGGGCACCAA...TTGAGTGGGGAAGACAGCTGGATGGTTGTCTGTCAACTTCTGCACTTTGGACAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000024791.15 ENSMUST00000113237.4 |
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| CDS-3UTR CAA 90 bp | ATGTCCAAAGTGCAGAAGTTGACAGACAACCATCCAGCTGTCTTCCCCACTCAAAGGTCTCTTGATTCCTaGGAAAGAGGAGGAAGGTGG | + |
|
Preference number: 5 (lower is better) Translates to: MSKVQKLTDNHPAVFPTQRSLDS*ERGGRW Trigger: CCACCTTCCTCCTCTTTCCAAGGAATCAAGAGACCT...TTGAGTGGGGAAGACAGCTGGATGGTTGTCTGTCAACTTCTGCACTTTGGACAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000113237.4 |
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| CDS GCA 72 bp | CTCACCACACGCTGGCATGGGCCCTCCTCACCCAGCTaGCGACACCAGGCCTTGCGTCTCCCCCAGTGCTTC | + |
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Preference number: 6 (lower is better) Translates to: LTTRWHGPSSPS*RHQALRLPQCF Trigger: GAAGCACTGGGGGAGACGCAAGGCCTGGTGTCGGCAGCTGGGTGAGGAGGGCCCATGCCAGCGTGTGGTGAG 68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000024791.15 ENSMUST00000113237.4 |
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| CDS TCA 72 bp | GTTGGTGCCCAGCATCTTGGCCACAGTCCAGCCCTCTaGCCACAGGTGTTCCCGGCTTCTGCCTGCCCCTGG | + |
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Preference number: 6 (lower is better) Translates to: VGAQHLGHSPAL*PQVFPASACPW Trigger: CCAGGGGCAGGCAGAAGCCGGGAACACCTGTGGTCAGAGGGCTGGACTGTGGCCAAGATGCTGGGCACCAAC 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000024791.15 ENSMUST00000113237.4 |
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| CDS CAA 72 bp | AAGGACTGGCCGGCCATGCCCTGCAGCACCGTGGTGTaGAGGGCTTGGGACAGGGCTGTGATCAGCAGCAGG | + |
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Preference number: 6 (lower is better) Translates to: KDWPAMPCSTVV*RAWDRAVISSR Trigger: CCTGCTGCTGATCACAGCCCTGTCCCAAGCCCTCAACACCACGGTGCTGCAGGGCATGGCCGGCCAGTCCTT 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000024791.15 ENSMUST00000113237.4 |
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| CDS GCA 72 bp | GTACATGACACCCTCAAGGACTGGCCGGCCATGCCCTaGAGCACCGTGGTGTTGAGGGCTTGGGACAGGGCT | + |
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Preference number: 6 (lower is better) Translates to: VHDTLKDWPAMP*STVVLRAWDRA Trigger: AGCCCTGTCCCAAGCCCTCAACACCACGGTGCTGCAGGGCATGGCCGGCCAGTCCTTGAGGGTGTCATGTAC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000024791.15 ENSMUST00000113237.4 |
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| CDS CCA 72 bp | CCGGCCATGCCCTGCAGCACCGTGGTGTTGAGGGCTTaGGACAGGGCTGTGATCAGCAGCAGGAGAAACTGG | + |
|
Preference number: 6 (lower is better) Translates to: PAMPCSTVVLRA*DRAVISSRRNW Trigger: CCAGTTTCTCCTGCTGCTGATCACAGCCCTGTCCCAAGCCCTCAACACCACGGTGCTGCAGGGCATGGCCGG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000024791.15 ENSMUST00000113237.4 |
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| CDS CAA 90 bp | CAAGGACTGGCCGGCCATGCCCTGCAGCACCGTGGTGTTGAGGGCTaGGGACAGGGCTGTGATCAGCAGCAGGAGAAACTGGTGGAGAGG | + |
|
Preference number: 6 (lower is better) Translates to: QGLAGHALQHRGVEG*GQGCDQQQEKLVER Trigger: CCTCTCCACCAGTTTCTCCTGCTGCTGATCACAGCCCTGTCCCAAGCCCTCAACACCACGGTGCTGCAGGGCATGGCCGGCCAGTCCTTG 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000024791.15 ENSMUST00000113237.4 |
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| CDS GCA 72 bp | ATGGGCCCTCCTCACCCAGCTGCCGACACCAGGCCTTaGGTCTCCCCCAGTGCTTCAAGGCGTCATAAGTAC | + |
|
Preference number: 6 (lower is better) Translates to: MGPPHPAADTRP*VSPSASRRHKY Trigger: GTACTTATGACGCCTTGAAGCACTGGGGGAGACGCAAGGCCTGGTGTCGGCAGCTGGGTGAGGAGGGCCCAT 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000024791.15 ENSMUST00000113237.4 |
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| CDS CAA 90 bp | TCGGCCTCGGAGACTCTGACACTGGTAGAGGCCCGCGTCACCGGCTaGGAGGTTCTTCAGAGTGATGGTGACGGTTCCAGCAAGGGTGTC | + |
|
Preference number: 6 (lower is better) Translates to: SASETLTLVEARVTG*EVLQSDGDGSSKGV Trigger: GACACCCTTGCTGGAACCGTCACCATCACTCTGAAGAACCTCCAAGCCGGTGACGCGGGCCTCTACCAGTGTCAGAGTCTCCGAGGCCGA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000024791.15 ENSMUST00000113237.4 |
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| CDS CAA 90 bp | TGCCTGCCCCTGGCCACAGCCCAGAGGATGCTGGCTGCAAGAAACTaGCTCAGGAGAACGCAGGCCAGGAGGAGAAGAATGGAGGTGGGT | + |
|
Preference number: 6 (lower is better) Translates to: CLPLATAQRMLAARN*LRRTQARRRRMEVG Trigger: ACCCACCTCCATTCTTCTCCTCCTGGCCTGCGTTCTCCTGAGCAAGTTTCTTGCAGCCAGCATCCTCTGGGCTGTGGCCAGGGGCAGGCA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000024791.15 ENSMUST00000113237.4 |
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| CDS CAA 90 bp | CGTACCTCCGGGTCCAGTGAGGATCTGAAGTTGGTGCCCAGCATCTaGGCCACAGTCCAGCCCTCTGACCACAGGTGTTCCCGGCTTCTG | + |
|
Preference number: 6 (lower is better) Translates to: RTSGSSEDLKLVPSI*ATVQPSDHRCSRLL Trigger: CAGAAGCCGGGAACACCTGTGGTCAGAGGGCTGGACTGTGGCCAAGATGCTGGGCACCAACTTCAGATCCTCACTGGACCCGGAGGTACG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000024791.15 ENSMUST00000113237.4 |
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| CDS TCA 72 bp | GCGTCTCCCCCAGTGCTTCAAGGCGTCATAAGTACATaGCACCCTCAAGGACTGGCCGGCCATGCCCTGCAG | + |
|
Preference number: 6 (lower is better) Translates to: ASPPVLQGVIST*HPQGLAGHALQ Trigger: CTGCAGGGCATGGCCGGCCAGTCCTTGAGGGTGTCATGTACTTATGACGCCTTGAAGCACTGGGGGAGACGC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000024791.15 ENSMUST00000113237.4 |
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| CDS CCA 72 bp | CAGGATGAAACCTGCCTGGAGGTGCTGTGTTCCACTTaGGCACCCTCGAAACTCGATGACTCCTCGGGGACC | + |
|
Preference number: 6 (lower is better) Translates to: QDETCLEVLCST*APSKLDDSSGT Trigger: GGTCCCCGAGGAGTCATCGAGTTTCGAGGGTGCCCAAGTGGAACACAGCACCTCCAGGCAGGTTTCATCCTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000113237.4 |
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| CDS CAA 72 bp | GAGACTCTGACACTGGTAGAGGCCCGCGTCACCGGCTaGGAGGTTCTTCAGAGTGATGGTGACGGTTCCAGC | + |
|
Preference number: 6 (lower is better) Translates to: ETLTLVEARVTG*EVLQSDGDGSS Trigger: GCTGGAACCGTCACCATCACTCTGAAGAACCTCCAAGCCGGTGACGCGGGCCTCTACCAGTGTCAGAGTCTC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000024791.15 ENSMUST00000113237.4 |
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| CDS CCA 72 bp | GGTAGGCTAGAGGTGACCCACAGGATGAAACCTGCCTaGAGGTGCTGTGTTCCACTTGGGCACCCTCGAAAC | + |
|
Preference number: 6 (lower is better) Translates to: GRLEVTHRMKPA*RCCVPLGHPRN Trigger: GTTTCGAGGGTGCCCAAGTGGAACACAGCACCTCCAGGCAGGTTTCATCCTGTGGGTCACCTCTAGCCTACC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000113237.4 |
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| CDS TCA 72 bp | GAATTCTCTCACGTACCTCCGGGTCCAGTGAGGATCTaGAGTTGGTGCCCAGCATCTTGGCCACAGTCCAGC | + |
|
Preference number: 6 (lower is better) Translates to: EFSHVPPGPVRI*SWCPASWPQSS Trigger: GCTGGACTGTGGCCAAGATGCTGGGCACCAACTTCAGATCCTCACTGGACCCGGAGGTACGTGAGAGAATTC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000113237.4 |
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| CDS GCA 72 bp | AGGTGGGTGGGAAGGAGGTCTCTTGATTCCTGGAGGTaGTGTGTTCCACTTGGGCACCCTCGAAACTCGATG | + |
|
Preference number: 6 (lower is better) Translates to: RWVGRRSLDSWR*CVPLGHPRNSM Trigger: CATCGAGTTTCGAGGGTGCCCAAGTGGAACACAGCACCTCCAGGAATCAAGAGACCTCCTTCCCACCCACCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024791.15 |
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| CDS CCA 72 bp | GAATGGAGGTGGGTGGGAAGGAGGTCTCTTGATTCCTaGAGGTGCTGTGTTCCACTTGGGCACCCTCGAAAC | + |
|
Preference number: 6 (lower is better) Translates to: EWRWVGRRSLDS*RCCVPLGHPRN Trigger: GTTTCGAGGGTGCCCAAGTGGAACACAGCACCTCCAGGAATCAAGAGACCTCCTTCCCACCCACCTCCATTC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024791.15 |
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| CDS GCA 72 bp | CAGAGTGATGGTGACGGTTCCAGCAAGGGTGTCATCTaGGATGACTGTGCTCCCATTCCGCTTCTTCAGGAA | + |
|
Preference number: 6 (lower is better) Translates to: QSDGDGSSKGVI*DDCAPIPLLQE Trigger: TTCCTGAAGAAGCGGAATGGGAGCACAGTCATCGCAGATGACACCCTTGCTGGAACCGTCACCATCACTCTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000024791.15 ENSMUST00000113237.4 |
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