Pregenerated sensors for TREM1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000042265Ensembl transcript IDs: ENSMUST00000048782.7, ENSMUST00000113251.10
Found 90 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GGCCTCTCCCAGCAGACTGGAGATTATGCAGCTGTGAATACCCTGTaGTCAGCGATGCCACCCCAGGGTGGAGTTACACAGAGAGCCACG | + |
|
Preference number: 1 (lower is better) Translates to: GLSQQTGDYAAVNTL*SAMPPQGGVTQRAT Trigger: CGTGGCTCTCTGTGTAACTCCACCCTGGGGTGGCATCGCTGAGCACAGGGTATTCACAGCTGCATAATCTCCAGTCTGCTGGGAGAGGCC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000048782.7 ENSMUST00000113251.10 |
||
| 3UTR GCA 90 bp | CCTCCAAAGACGTGTCCCAGAGCACCAACCCAAAGTGGATTCCACTaGGGCCTCTCCCAGCAGACTGGAGATTATGCAGCTGTGAATACC | + |
|
Preference number: 1 (lower is better) Translates to: PPKTCPRAPTQSGFH*GLSQQTGDYAAVNT Trigger: GGTATTCACAGCTGCATAATCTCCAGTCTGCTGGGAGAGGCCGCAGTGGAATCCACTTTGGGTTGGTGCTCTGGGACACGTCTTTGGAGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000048782.7 ENSMUST00000113251.10 |
||
| 3UTR CCA 90 bp | CCTGTCTCAGTCCAGGCAAAAAGGCATTCAGCTAGCAGCAGAGTCTaGCTCCCCATCTCCCTGCCTCTGGAGCTCTTGAGTAAGGGAACT | + |
|
Preference number: 1 (lower is better) Translates to: PVSVQAKRHSASSRV*LPISLPLELLSKGT Trigger: AGTTCCCTTACTCAAGAGCTCCAGAGGCAGGGAGATGGGGAGCCAGACTCTGCTGCTAGCTGAATGCCTTTTTGCCTGGACTGAGACAGG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000048782.7 ENSMUST00000113251.10 |
||
| 3UTR TCA 90 bp | CTAGCAGCAGAGTCTGGCTCCCCATCTCCCTGCCTCTGGAGCTCTTaGGTAAGGGAACTCTCTAGATTTCATTCCTGCCAGGAGGTGATG | + |
|
Preference number: 1 (lower is better) Translates to: LAAESGSPSPCLWSS*VRELSRFHSCQEVM Trigger: CATCACCTCCTGGCAGGAATGAAATCTAGAGAGTTCCCTTACTCAAGAGCTCCAGAGGCAGGGAGATGGGGAGCCAGACTCTGCTGCTAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000048782.7 ENSMUST00000113251.10 |
||
| 3UTR TCA 90 bp | ACAGGAGGTGGAAGGGAAAGTCTCCCTGACAGGAAAGTGCTTTCCTaGTATAAGATACGTGGTTCAGCCACTCCTCGGCCTTCTGGGTGC | + |
|
Preference number: 1 (lower is better) Translates to: TGGGRESLPDRKVLS*YKIRGSATPRPSGC Trigger: GCACCCAGAAGGCCGAGGAGTGGCTGAACCACGTATCTTATATCAGGAAAGCACTTTCCTGTCAGGGAGACTTTCCCTTCCACCTCCTGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000048782.7 ENSMUST00000113251.10 |
||
| 3UTR GCA 90 bp | GATACTCCCACCTCAATTAACAGCGAAGGCAATACAGCACAGGCATaGCTGCAGGGGACAATTCATCAACTGAGGCTCTCCTCCAGGGTG | + |
|
Preference number: 1 (lower is better) Translates to: DTPTSINSEGNTAQA*LQGTIHQLRLSSRV Trigger: CACCCTGGAGGAGAGCCTCAGTTGATGAATTGTCCCCTGCAGGCATGCCTGTGCTGTATTGCCTTCGCTGTTAATTGAGGTGGGAGTATC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048782.7 |
||
| 3UTR GCA 90 bp | GTGTCTGACTCCCAGAAAGGAAGGCCCAGAGGTAGGAGGACAGGCTaGTTCATGAGCAAGGGCCCTGCTAAAATGACTAGAATTGTACCA | + |
|
Preference number: 1 (lower is better) Translates to: VSDSQKGRPRGRRTG*FMSKGPAKMTRIVP Trigger: TGGTACAATTCTAGTCATTTTAGCAGGGCCCTTGCTCATGAAGCAGCCTGTCCTCCTACCTCTGGGCCTTCCTTTCTGGGAGTCAGACAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000048782.7 ENSMUST00000113251.10 |
||
| 3UTR GCA 90 bp | GGATCTACCATCCTTTTCCCACCCAAAGAGGTGGAAACAAGCAAATaGCAGTGTGTCCTAGAGAAAGCACAGGAGCCACAGGGTACCCAG | + |
|
Preference number: 1 (lower is better) Translates to: GSTILFPPKEVETSK*QCVLEKAQEPQGTQ Trigger: CTGGGTACCCTGTGGCTCCTGTGCTTTCTCTAGGACACACTGGCATTTGCTTGTTTCCACCTCTTTGGGTGGGAAAAGGATGGTAGATCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000048782.7 ENSMUST00000113251.10 |
||
| 3UTR CCA 90 bp | ACAGTTGGGACCCAGTGTATGAAGTGGCACCAGCCATATACAGGGTaGATACTCCCACCTCAATTAACAGCGAAGGCAATACAGCACAGG | + |
|
Preference number: 1 (lower is better) Translates to: TVGTQCMKWHQPYTG*ILPPQLTAKAIQHR Trigger: CCTGTGCTGTATTGCCTTCGCTGTTAATTGAGGTGGGAGTATCCACCCTGTATATGGCTGGTGCCACTTCATACACTGGGTCCCAACTGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048782.7 |
||
| 3UTR GCA 90 bp | GTAAGGGAACTCTCTAGATTTCATTCCTGCCAGGAGGTGATGGCCTaGTACCCCTGTGGCCTTACTCTGATCACATACACTTTAACCCTC | + |
|
Preference number: 1 (lower is better) Translates to: VRELSRFHSCQEVMA*YPCGLTLITYTLTL Trigger: GAGGGTTAAAGTGTATGTGATCAGAGTAAGGCCACAGGGGTAGCAGGCCATCACCTCCTGGCAGGAATGAAATCTAGAGAGTTCCCTTAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000048782.7 ENSMUST00000113251.10 |
||
| 3UTR TCA 90 bp | CATGTCTTCTTGGTCCATGGTTGGGAGTGTTCAGAGGACTACAGATaGAGACAGAAATCTGAGTGTCTGACTCCCAGAAAGGAAGGCCCA | + |
|
Preference number: 1 (lower is better) Translates to: HVFLVHGWECSEDYR*RQKSECLTPRKEGP Trigger: TGGGCCTTCCTTTCTGGGAGTCAGACACTCAGATTTCTGTCTTCATCTGTAGTCCTCTGAACACTCCCAACCATGGACCAAGAAGACATG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000048782.7 ENSMUST00000113251.10 |
||
| 3UTR CCA 90 bp | CTGCCTGCTTCTGATCAACTAGGCTTCCTTATTTTTATACACAGTTaGGACCCAGTGTATGAAGTGGCACCAGCCATATACAGGGTGGAT | + |
|
Preference number: 1 (lower is better) Translates to: LPASDQLGFLIFIHS*DPVYEVAPAIYRVD Trigger: ATCCACCCTGTATATGGCTGGTGCCACTTCATACACTGGGTCCCAACTGTGTATAAAAATAAGGAAGCCTAGTTGATCAGAAGCAGGCAG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000048782.7 |
||
| 3UTR TCA 90 bp | CTATCTCTTCCAGGTGTTTCCCAGGCAACAGCATCCAGCTTAACTTaGTTTCTCTCTCCCAGTTGCATTATTGTCAAGGTAGGATCATGT | + |
|
Preference number: 1 (lower is better) Translates to: LSLPGVSQATASSLT*FLSPSCIIVKVGSC Trigger: ACATGATCCTACCTTGACAATAATGCAACTGGGAGAGAGAAATCAAGTTAAGCTGGATGCTGTTGCCTGGGAAACACCTGGAAGAGATAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000048782.7 ENSMUST00000113251.10 |
||
| 3UTR GCA 90 bp | ATAAAATGCACACAGCATGTTGATGCCATCCATGTACTGATTCAATaGTACGGATACTATCTCTTCCAGGTGTTTCCCAGGCAACAGCAT | + |
|
Preference number: 1 (lower is better) Translates to: IKCTQHVDAIHVLIQ*YGYYLFQVFPRQQH Trigger: ATGCTGTTGCCTGGGAAACACCTGGAAGAGATAGTATCCGTAGCATTGAATCAGTACATGGATGGCATCAACATGCTGTGTGCATTTTAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000048782.7 ENSMUST00000113251.10 |
||
| 3UTR-3UTR CCA 90 bp | CAGGCCCCTTGCCTTAGTCCCCCAAGTGCTGGGATCACAGACATGTGTCATTGTGCTAGCAGCAGAGTCTaGCTCCCCATCTCCCTGCCT | + |
|
Preference number: 2 (lower is better) Translates to: QAPCLSPPSAGITDMCHCASSRV*LPISLP Trigger: AGGCAGGGAGATGGGGAGCCAGACTCTGCTGCTAGC...ACAATGACACATGTCTGTGATCCCAGCACTTGGGGGACTAAGGCAAGGGGCCTG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000048782.7 |
||
| 3UTR-3UTR TCA 90 bp | CCAACCCAAAGTGGATTCCACTGCGGCCTCTCCCAGCAGACTGGAGATTATGCAGGACAGGCTGCTTCATaGGCAAGGGCCCTGCTAAAA | + |
|
Preference number: 2 (lower is better) Translates to: PTQSGFHCGLSQQTGDYAGQAAS*ARALLK Trigger: TTTTAGCAGGGCCCTTGCTCATGAAGCAGCCTGTCC...TGCATAATCTCCAGTCTGCTGGGAGAGGCCGCAGTGGAATCCACTTTGGGTTGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000048782.7 ENSMUST00000113251.10 |
||
| 3UTR-3UTR CCA 90 bp | CCAACCCAAAGTGGATTCCACTGCGGCCTCTCCCAGCAGACTGGAGATTATGCAGTGAAGGAAGGTGAGTaGGAGGTAGACTCACACAGG | + |
|
Preference number: 2 (lower is better) Translates to: PTQSGFHCGLSQQTGDYAVKEGE*EVDSHR Trigger: CCTGTGTGAGTCTACCTCCCACTCACCTTCCTTCAC...TGCATAATCTCCAGTCTGCTGGGAGAGGCCGCAGTGGAATCCACTTTGGGTTGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000048782.7 ENSMUST00000113251.10 |
||
| 3UTR-3UTR CCA 90 bp | CAGGCAAAAAGGCATTCAGCTAGCAGCAGAGTCTGGCTCCCCATCTCCCTGCCTATGGCCAGAGTGTTCTaGGAATGGTTTCCCCTTTTC | + |
|
Preference number: 2 (lower is better) Translates to: QAKRHSASSRVWLPISLPMARVF*EWFPLF Trigger: GAAAAGGGGAAACCATTCCCAGAACACTCTGGCCAT...AGGCAGGGAGATGGGGAGCCAGACTCTGCTGCTAGCTGAATGCCTTTTTGCCTG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 2 transcripts: ENSMUST00000048782.7 ENSMUST00000113251.10 |
||
| 3UTR-3UTR TCA 90 bp | TGGTTCAGCCACTCCTCGGCCTTCTGGGTGCGATCAAGTGAGCTGGATGCTTTGAGGGCCCTGCTAAAATaGCTAGAATTGTACCATCCA | + |
|
Preference number: 2 (lower is better) Translates to: WFSHSSAFWVRSSELDALRALLK*LELYHP Trigger: TGGATGGTACAATTCTAGTCATTTTAGCAGGGCCCT...CAAAGCATCCAGCTCACTTGATCGCACCCAGAAGGCCGAGGAGTGGCTGAACCA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000048782.7 ENSMUST00000113251.10 |
||
| 3UTR-3UTR TCA 90 bp | CCTGTCTCAGTCCAGGCAAAAAGGCATTCAGCTAGCAGCAGAGTCTGGCTCCCCATGCACACAGCATGTTaGTGCCATCCATGTACTGAT | + |
|
Preference number: 2 (lower is better) Translates to: PVSVQAKRHSASSRVWLPMHTAC*CHPCTD Trigger: ATCAGTACATGGATGGCATCAACATGCTGTGTGCAT...GGGGAGCCAGACTCTGCTGCTAGCTGAATGCCTTTTTGCCTGGACTGAGACAGG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000048782.7 ENSMUST00000113251.10 |
||
| 3UTR-3UTR TCA 90 bp | TGGTTCAGCCACTCCTCGGCCTTCTGGGTGCGATCAAGTGAGCTGGATGCTTTGATGCACACAGCATGTTaGTGCCATCCATGTACTGAT | + |
|
Preference number: 2 (lower is better) Translates to: WFSHSSAFWVRSSELDALMHTAC*CHPCTD Trigger: ATCAGTACATGGATGGCATCAACATGCTGTGTGCAT...CAAAGCATCCAGCTCACTTGATCGCACCCAGAAGGCCGAGGAGTGGCTGAACCA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000048782.7 ENSMUST00000113251.10 |
||
| 3UTR-3UTR GCA 90 bp | ACCCAAAGAGGTGGAAACAAGCAAATGCCAGTGTGTCCTAGAGAAAGCACAGGACAGGAGGTGATGGCCTaGTACCCCTGTGGCCTTACT | + |
|
Preference number: 2 (lower is better) Translates to: TQRGGNKQMPVCPRESTGQEVMA*YPCGLT Trigger: AGTAAGGCCACAGGGGTAGCAGGCCATCACCTCCTG...TCCTGTGCTTTCTCTAGGACACACTGGCATTTGCTTGTTTCCACCTCTTTGGGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000048782.7 ENSMUST00000113251.10 |
||
| 3UTR-3UTR GCA 90 bp | CAGGAGGTGGAAGGGAAAGTCTCCCTGACAGGAAAGTGCTTTCCTGATATAAGACAGGAGGTGATGGCCTaGTACCCCTGTGGCCTTACT | + |
|
Preference number: 2 (lower is better) Translates to: QEVEGKVSLTGKCFPDIRQEVMA*YPCGLT Trigger: AGTAAGGCCACAGGGGTAGCAGGCCATCACCTCCTG...TCTTATATCAGGAAAGCACTTTCCTGTCAGGGAGACTTTCCCTTCCACCTCCTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000048782.7 ENSMUST00000113251.10 |
||
| 3UTR-3UTR CCA 90 bp | CAAAAAGGCATTCAGCTAGCAGCAGAGTCTGGCTCCCCATCTCCCTGCCTCTGGGACAGGGGGAAGCTCTaGAGTTTCTCTTTATTTCAG | + |
|
Preference number: 2 (lower is better) Translates to: QKGIQLAAESGSPSPCLWDRGKL*SFSLFQ Trigger: CTGAAATAAAGAGAAACTCCAGAGCTTCCCCCTGTC...CCAGAGGCAGGGAGATGGGGAGCCAGACTCTGCTGCTAGCTGAATGCCTTTTTG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000048782.7 ENSMUST00000113251.10 |
||
| 3UTR-3UTR TCA 90 bp | CCAACCCAAAGTGGATTCCACTGCGGCCTCTCCCAGCAGACTGGAGATTATGCAAGGGCCCTGCTAAAATaGCTAGAATTGTACCATCCA | + |
|
Preference number: 2 (lower is better) Translates to: PTQSGFHCGLSQQTGDYARALLK*LELYHP Trigger: TGGATGGTACAATTCTAGTCATTTTAGCAGGGCCCT...TGCATAATCTCCAGTCTGCTGGGAGAGGCCGCAGTGGAATCCACTTTGGGTTGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000048782.7 ENSMUST00000113251.10 |
||
| 3UTR-3UTR TCA 90 bp | GTGAATACCCTGTGCTCAGCGATGCCACCCCAGGGTGGAGTTACACAGAGAGCCAGGAAAGTGCTTTCCTaGTATAAGATACGTGGTTCA | + |
|
Preference number: 2 (lower is better) Translates to: VNTLCSAMPPQGGVTQRARKVLS*YKIRGS Trigger: TGAACCACGTATCTTATATCAGGAAAGCACTTTCCT...GGCTCTCTGTGTAACTCCACCCTGGGGTGGCATCGCTGAGCACAGGGTATTCAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000048782.7 ENSMUST00000113251.10 |
||
| 3UTR-3UTR TCA 90 bp | TACCATCCTTTTCCCACCCAAAGAGGTGGAAACAAGCAAATGCCAGTGTGTCCTAGAGGTGAAGGAAGGTaGGTGGGAGGTAGACTCACA | + |
|
Preference number: 2 (lower is better) Translates to: YHPFPTQRGGNKQMPVCPRGEGR*VGGRLT Trigger: TGTGAGTCTACCTCCCACTCACCTTCCTTCACCTCT...AGGACACACTGGCATTTGCTTGTTTCCACCTCTTTGGGTGGGAAAAGGATGGTA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000048782.7 ENSMUST00000113251.10 |
||
| 3UTR-3UTR TCA 90 bp | ACAGTGAACCGTCCTTATGTGACAGAAGCACACCTTAAGACCTGGGATCTTCACAGAGGTGAAGGAAGGTaGGTGGGAGGTAGACTCACA | + |
|
Preference number: 2 (lower is better) Translates to: TVNRPYVTEAHLKTWDLHRGEGR*VGGRLT Trigger: TGTGAGTCTACCTCCCACTCACCTTCCTTCACCTCT...GTGAAGATCCCAGGTCTTAAGGTGTGCTTCTGTCACATAAGGACGGTTCACTGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000048782.7 ENSMUST00000113251.10 |
||
| 3UTR-3UTR GCA 90 bp | CAGGCAAAAAGGCATTCAGCTAGCAGCAGAGTCTGGCTCCCCATCTCCCTGCCTTTTCTCTCTCCCAGTTaGATTATTGTCAAGGTAGGA | + |
|
Preference number: 2 (lower is better) Translates to: QAKRHSASSRVWLPISLPFLSPS*IIVKVG Trigger: TCCTACCTTGACAATAATGCAACTGGGAGAGAGAAA...AGGCAGGGAGATGGGGAGCCAGACTCTGCTGCTAGCTGAATGCCTTTTTGCCTG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000048782.7 ENSMUST00000113251.10 |
||
| 3UTR-3UTR GCA 90 bp | GAGCACCAACCCAAAGTGGATTCCACTGCGGCCTCTCCCAGCAGACTGGAGATTTTTCTCTCTCCCAGTTaGATTATTGTCAAGGTAGGA | + |
|
Preference number: 2 (lower is better) Translates to: EHQPKVDSTAASPSRLEIFLSPS*IIVKVG Trigger: TCCTACCTTGACAATAATGCAACTGGGAGAGAGAAA...AATCTCCAGTCTGCTGGGAGAGGCCGCAGTGGAATCCACTTTGGGTTGGTGCTC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000048782.7 ENSMUST00000113251.10 |
||
| 3UTR-3UTR CCA 90 bp | TACCATCCTTTTCCCACCCAAAGAGGTGGAAACAAGCAAATGCCAGTGTGTCCTGGCCTGCTACCCCTGTaGCCTTACTCTGATCACATA | + |
|
Preference number: 2 (lower is better) Translates to: YHPFPTQRGGNKQMPVCPGLLPL*PYSDHI Trigger: TATGTGATCAGAGTAAGGCCACAGGGGTAGCAGGCC...AGGACACACTGGCATTTGCTTGTTTCCACCTCTTTGGGTGGGAAAAGGATGGTA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000048782.7 ENSMUST00000113251.10 |
||
| 3UTR-3UTR CCA 90 bp | TACCATCCTTTTCCCACCCAAAGAGGTGGAAACAAGCAAATGCCAGTGTGTCCTGTGAAGGAAGGTGAGTaGGAGGTAGACTCACACAGG | + |
|
Preference number: 2 (lower is better) Translates to: YHPFPTQRGGNKQMPVCPVKEGE*EVDSHR Trigger: CCTGTGTGAGTCTACCTCCCACTCACCTTCCTTCAC...AGGACACACTGGCATTTGCTTGTTTCCACCTCTTTGGGTGGGAAAAGGATGGTA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000048782.7 ENSMUST00000113251.10 |
||
| 3UTR-3UTR TCA 90 bp | GGTCTGCCTGCTTCTGATCAACTAGGCTTCCTTATTTTTATACACAGTTGGGACGGACAGGCTGCTTCATaGGCAAGGGCCCTGCTAAAA | + |
|
Preference number: 2 (lower is better) Translates to: GLPASDQLGFLIFIHSWDGQAAS*ARALLK Trigger: TTTTAGCAGGGCCCTTGCTCATGAAGCAGCCTGTCC...GTCCCAACTGTGTATAAAAATAAGGAAGCCTAGTTGATCAGAAGCAGGCAGACC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000048782.7 |
||
| 3UTR-3UTR TCA 90 bp | ACCCAAAGAGGTGGAAACAAGCAAATGCCAGTGTGTCCTAGAGAAAGCACAGGATGCCTCTGGAGCTCTTaGGTAAGGGAACTCTCTAGA | + |
|
Preference number: 2 (lower is better) Translates to: TQRGGNKQMPVCPRESTGCLWSS*VRELSR Trigger: TCTAGAGAGTTCCCTTACTCAAGAGCTCCAGAGGCA...TCCTGTGCTTTCTCTAGGACACACTGGCATTTGCTTGTTTCCACCTCTTTGGGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000048782.7 ENSMUST00000113251.10 |
||
| 3UTR-3UTR TCA 90 bp | CAGGAGGTGGAAGGGAAAGTCTCCCTGACAGGAAAGTGCTTTCCTGATATAAGAGCATCCAGCTTAACTTaGTTTCTCTCTCCCAGTTGC | + |
|
Preference number: 2 (lower is better) Translates to: QEVEGKVSLTGKCFPDIRASSLT*FLSPSC Trigger: GCAACTGGGAGAGAGAAATCAAGTTAAGCTGGATGC...TCTTATATCAGGAAAGCACTTTCCTGTCAGGGAGACTTTCCCTTCCACCTCCTG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000048782.7 ENSMUST00000113251.10 |
||
| 3UTR-3UTR CCA 90 bp | ACAGTGAACCGTCCTTATGTGACAGAAGCACACCTTAAGACCTGGGATCTTCACATGGCCAGAGTGTTCTaGGAATGGTTTCCCCTTTTC | + |
|
Preference number: 2 (lower is better) Translates to: TVNRPYVTEAHLKTWDLHMARVF*EWFPLF Trigger: GAAAAGGGGAAACCATTCCCAGAACACTCTGGCCAT...GTGAAGATCCCAGGTCTTAAGGTGTGCTTCTGTCACATAAGGACGGTTCACTGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000048782.7 ENSMUST00000113251.10 |
||
| 3UTR-3UTR CCA 90 bp | GGTCTGCCTGCTTCTGATCAACTAGGCTTCCTTATTTTTATACACAGTTGGGACGAGAACTGGCTGTCTTaGCTTTCCCAGTGCCGAGAT | + |
|
Preference number: 2 (lower is better) Translates to: GLPASDQLGFLIFIHSWDENWLS*LSQCRD Trigger: ATCTCGGCACTGGGAAAGCCAAGACAGCCAGTTCTC...GTCCCAACTGTGTATAAAAATAAGGAAGCCTAGTTGATCAGAAGCAGGCAGACC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000048782.7 |
||
| 3UTR-3UTR GCA 90 bp | GGTCTGCCTGCTTCTGATCAACTAGGCTTCCTTATTTTTATACACAGTTGGGACAATACAGCACAGGCATaGCTGCAGGGGACAATTCAT | + |
|
Preference number: 2 (lower is better) Translates to: GLPASDQLGFLIFIHSWDNTAQA*LQGTIH Trigger: ATGAATTGTCCCCTGCAGGCATGCCTGTGCTGTATT...GTCCCAACTGTGTATAAAAATAAGGAAGCCTAGTTGATCAGAAGCAGGCAGACC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000048782.7 |
||
| 3UTR-3UTR GCA 90 bp | ACAGTGAACCGTCCTTATGTGACAGAAGCACACCTTAAGACCTGGGATCTTCACAAGTCAATAATAAAATaGACACAGCATGTTGATGCC | + |
|
Preference number: 2 (lower is better) Translates to: TVNRPYVTEAHLKTWDLHKSIIK*TQHVDA Trigger: GGCATCAACATGCTGTGTGCATTTTATTATTGACTT...GTGAAGATCCCAGGTCTTAAGGTGTGCTTCTGTCACATAAGGACGGTTCACTGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000048782.7 ENSMUST00000113251.10 |
||
| 3UTR TCA 72 bp | GCGGCCTCTCCCAGCAGACTGGAGATTATGCAGCTGTaGATACCCTGTGCTCAGCGATGCCACCCCAGGGTG | + |
|
Preference number: 3 (lower is better) Translates to: AASPSRLEIMQL*IPCAQRCHPRV Trigger: CACCCTGGGGTGGCATCGCTGAGCACAGGGTATTCACAGCTGCATAATCTCCAGTCTGCTGGGAGAGGCCGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000048782.7 ENSMUST00000113251.10 |
||
| 3UTR GCA 72 bp | ATTCCACTGCGGCCTCTCCCAGCAGACTGGAGATTATaGAGCTGTGAATACCCTGTGCTCAGCGATGCCACC | + |
|
Preference number: 3 (lower is better) Translates to: IPLRPLPADWRL*SCEYPVLSDAT Trigger: GGTGGCATCGCTGAGCACAGGGTATTCACAGCTGCATAATCTCCAGTCTGCTGGGAGAGGCCGCAGTGGAAT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000048782.7 ENSMUST00000113251.10 |
||
| 3UTR GCA 72 bp | ACGTGTCCCAGAGCACCAACCCAAAGTGGATTCCACTaGGGCCTCTCCCAGCAGACTGGAGATTATGCAGCT | + |
|
Preference number: 3 (lower is better) Translates to: TCPRAPTQSGFH*GLSQQTGDYAA Trigger: AGCTGCATAATCTCCAGTCTGCTGGGAGAGGCCGCAGTGGAATCCACTTTGGGTTGGTGCTCTGGGACACGT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000048782.7 ENSMUST00000113251.10 |
||
| 3UTR CCA 72 bp | GTCCAGGCAAAAAGGCATTCAGCTAGCAGCAGAGTCTaGCTCCCCATCTCCCTGCCTCTGGAGCTCTTGAGT | + |
|
Preference number: 3 (lower is better) Translates to: VQAKRHSASSRV*LPISLPLELLS Trigger: ACTCAAGAGCTCCAGAGGCAGGGAGATGGGGAGCCAGACTCTGCTGCTAGCTGAATGCCTTTTTGCCTGGAC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000048782.7 ENSMUST00000113251.10 |
||
| 3UTR CCA 72 bp | CCAAAGTGGATTCCACTGCGGCCTCTCCCAGCAGACTaGAGATTATGCAGCTGTGAATACCCTGTGCTCAGC | + |
|
Preference number: 3 (lower is better) Translates to: PKWIPLRPLPAD*RLCSCEYPVLS Trigger: GCTGAGCACAGGGTATTCACAGCTGCATAATCTCCAGTCTGCTGGGAGAGGCCGCAGTGGAATCCACTTTGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000048782.7 ENSMUST00000113251.10 |
||
| 3UTR TCA 72 bp | GTTCAGCCACTCCTCGGCCTTCTGGGTGCGATCAAGTaGGCTGGATGCTTTGTGGTGATGCGGTTTGATCTT | + |
|
Preference number: 3 (lower is better) Translates to: VQPLLGLLGAIK*AGCFVVMRFDL Trigger: AAGATCAAACCGCATCACCACAAAGCATCCAGCTCACTTGATCGCACCCAGAAGGCCGAGGAGTGGCTGAAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000048782.7 ENSMUST00000113251.10 |
||
| 3UTR GCA 72 bp | CAGTCAGGAAACAAACCTACTGAGATGAACAGCATCTaGACCAGCCCTCCAAAGACGTGTCCCAGAGCACCA | + |
|
Preference number: 3 (lower is better) Translates to: QSGNKPTEMNSI*TSPPKTCPRAP Trigger: TGGTGCTCTGGGACACGTCTTTGGAGGGCTGGTGCAGATGCTGTTCATCTCAGTAGGTTTGTTTCCTGACTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000048782.7 ENSMUST00000113251.10 |
||
| 3UTR GCA 72 bp | CTCTCTAGATTTCATTCCTGCCAGGAGGTGATGGCCTaGTACCCCTGTGGCCTTACTCTGATCACATACACT | + |
|
Preference number: 3 (lower is better) Translates to: LSRFHSCQEVMA*YPCGLTLITYT Trigger: AGTGTATGTGATCAGAGTAAGGCCACAGGGGTAGCAGGCCATCACCTCCTGGCAGGAATGAAATCTAGAGAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000048782.7 ENSMUST00000113251.10 |
||
| 3UTR GCA 72 bp | ACCTCAATTAACAGCGAAGGCAATACAGCACAGGCATaGCTGCAGGGGACAATTCATCAACTGAGGCTCTCC | + |
|
Preference number: 3 (lower is better) Translates to: TSINSEGNTAQA*LQGTIHQLRLS Trigger: GGAGAGCCTCAGTTGATGAATTGTCCCCTGCAGGCATGCCTGTGCTGTATTGCCTTCGCTGTTAATTGAGGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048782.7 |
||
| 3UTR CCA 72 bp | AACCGTCCTTATGTGACAGAAGCACACCTTAAGACCTaGGATCTTCACAGGAGGTGGAAGGGAAAGTCTCCC | + |
|
Preference number: 3 (lower is better) Translates to: NRPYVTEAHLKT*DLHRRWKGKSP Trigger: GGGAGACTTTCCCTTCCACCTCCTGTGAAGATCCCAGGTCTTAAGGTGTGCTTCTGTCACATAAGGACGGTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000048782.7 ENSMUST00000113251.10 |
||
| 3UTR-3UTR CAA 90 bp | CAGGCCCCTTGCCTTAGTCCCCCAAGTGCTGGGATCACAGACATGTGTCATTGTACTATAAACCCCTGCTaGATTCTTCAGTCAGGAAAC | + |
|
Preference number: 3 (lower is better) Translates to: QAPCLSPPSAGITDMCHCTINPC*ILQSGN Trigger: GTTTCCTGACTGAAGAATCAAGCAGGGGTTTATAGT...ACAATGACACATGTCTGTGATCCCAGCACTTGGGGGACTAAGGCAAGGGGCCTG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000048782.7 |
||
| 3UTR TCA 72 bp | AATGAGGAGAGTGGACAGGGTCAGCTGAGGATATCCTaGGCCTTAGACGTCACCGGTGATTACAGGTTCAAT | + |
|
Preference number: 3 (lower is better) Translates to: NEESGQGQLRIS*ALDVTGDYRFN Trigger: ATTGAACCTGTAATCACCGGTGACGTCTAAGGCTCAGGATATCCTCAGCTGACCCTGTCCACTCTCCTCATT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000048782.7 ENSMUST00000113251.10 |
||
| 3UTR TCA 72 bp | CCCCTGCTTGATTCTTCAGTCAGGAAACAAACCTACTaGGATGAACAGCATCTGCACCAGCCCTCCAAAGAC | + |
|
Preference number: 3 (lower is better) Translates to: PLLDSSVRKQTY*DEQHLHQPSKD Trigger: GTCTTTGGAGGGCTGGTGCAGATGCTGTTCATCTCAGTAGGTTTGTTTCCTGACTGAAGAATCAAGCAGGGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000048782.7 ENSMUST00000113251.10 |
||
| 3UTR GCA 72 bp | CAGGAGGTGGAAGGGAAAGTCTCCCTGACAGGAAAGTaGTTTCCTGATATAAGATACGTGGTTCAGCCACTC | + |
|
Preference number: 3 (lower is better) Translates to: QEVEGKVSLTGK*FPDIRYVVQPL Trigger: GAGTGGCTGAACCACGTATCTTATATCAGGAAAGCACTTTCCTGTCAGGGAGACTTTCCCTTCCACCTCCTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000048782.7 ENSMUST00000113251.10 |
||
| 3UTR-3UTR CAA 90 bp | GGTCTGCCTGCTTCTGATCAACTAGGCTTCCTTATTTTTATACACAGTTGGGACAGAGAACTGGCTGTCTaGGCTTTCCCAGTGCCGAGA | + |
|
Preference number: 3 (lower is better) Translates to: GLPASDQLGFLIFIHSWDRELAV*AFPVPR Trigger: TCTCGGCACTGGGAAAGCCAAGACAGCCAGTTCTCT...GTCCCAACTGTGTATAAAAATAAGGAAGCCTAGTTGATCAGAAGCAGGCAGACC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000048782.7 |
||
| 3UTR CCA 72 bp | ACCCAGTGTATGAAGTGGCACCAGCCATATACAGGGTaGATACTCCCACCTCAATTAACAGCGAAGGCAATA | + |
|
Preference number: 3 (lower is better) Translates to: TQCMKWHQPYTG*ILPPQLTAKAI Trigger: TATTGCCTTCGCTGTTAATTGAGGTGGGAGTATCCACCCTGTATATGGCTGGTGCCACTTCATACACTGGGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048782.7 |
||
| 3UTR-3UTR CAA 90 bp | ACCCAAAGAGGTGGAAACAAGCAAATGCCAGTGTGTCCTAGAGAAAGCACAGGAATTTCTCTCTCCCAGTaGCATTATTGTCAAGGTAGG | + |
|
Preference number: 3 (lower is better) Translates to: TQRGGNKQMPVCPRESTGISLSQ*HYCQGR Trigger: CCTACCTTGACAATAATGCAACTGGGAGAGAGAAAT...TCCTGTGCTTTCTCTAGGACACACTGGCATTTGCTTGTTTCCACCTCTTTGGGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000048782.7 ENSMUST00000113251.10 |
||
| 3UTR-3UTR CAA 90 bp | ACAGTGAACCGTCCTTATGTGACAGAAGCACACCTTAAGACCTGGGATCTTCACATTTCTCTCTCCCAGTaGCATTATTGTCAAGGTAGG | + |
|
Preference number: 3 (lower is better) Translates to: TVNRPYVTEAHLKTWDLHISLSQ*HYCQGR Trigger: CCTACCTTGACAATAATGCAACTGGGAGAGAGAAAT...GTGAAGATCCCAGGTCTTAAGGTGTGCTTCTGTCACATAAGGACGGTTCACTGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000048782.7 ENSMUST00000113251.10 |
||
| 3UTR TCA 72 bp | CCAGGTGTTTCCCAGGCAACAGCATCCAGCTTAACTTaGTTTCTCTCTCCCAGTTGCATTATTGTCAAGGTA | + |
|
Preference number: 3 (lower is better) Translates to: PGVSQATASSLT*FLSPSCIIVKV Trigger: TACCTTGACAATAATGCAACTGGGAGAGAGAAATCAAGTTAAGCTGGATGCTGTTGCCTGGGAAACACCTGG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000048782.7 ENSMUST00000113251.10 |
||
| 3UTR TCA 72 bp | TGGGAACCTTTCGATGAAGTTGATTCCAGCCACTGCTaGAGTAGAAGGAATGGATCTACCATCCTTTTCCCA | + |
|
Preference number: 3 (lower is better) Translates to: WEPFDEVDSSHC*SRRNGSTILFP Trigger: TGGGAAAAGGATGGTAGATCCATTCCTTCTACTTCAGCAGTGGCTGGAATCAACTTCATCGAAAGGTTCCCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000048782.7 ENSMUST00000113251.10 |
||
| 3UTR TCA 72 bp | CTTCCTTATTTTTATACACAGTTGGGACCCAGTGTATaGAGTGGCACCAGCCATATACAGGGTGGATACTCC | + |
|
Preference number: 3 (lower is better) Translates to: LPYFYTQLGPSV*SGTSHIQGGYS Trigger: GGAGTATCCACCCTGTATATGGCTGGTGCCACTTCATACACTGGGTCCCAACTGTGTATAAAAATAAGGAAG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000048782.7 |
||
| 3UTR GCA 72 bp | ACACAGCATGTTGATGCCATCCATGTACTGATTCAATaGTACGGATACTATCTCTTCCAGGTGTTTCCCAGG | + |
|
Preference number: 3 (lower is better) Translates to: TQHVDAIHVLIQ*YGYYLFQVFPR Trigger: CCTGGGAAACACCTGGAAGAGATAGTATCCGTAGCATTGAATCAGTACATGGATGGCATCAACATGCTGTGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000048782.7 ENSMUST00000113251.10 |
||
| 3UTR CCA 72 bp | TTCTTGACTCCCACAACAAGAGACAGGGGGAAGCTCTaGAGTTTCTCTTTATTTCAGGCCAACCCAACTATT | + |
|
Preference number: 3 (lower is better) Translates to: FLTPTTRDRGKL*SFSLFQANPTI Trigger: AATAGTTGGGTTGGCCTGAAATAAAGAGAAACTCCAGAGCTTCCCCCTGTCTCTTGTTGTGGGAGTCAAGAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000048782.7 ENSMUST00000113251.10 |
||
| 3UTR CCA 72 bp | ATTATTGTCAAGGTAGGATCATGTCTTCTTGGTCCATaGTTGGGAGTGTTCAGAGGACTACAGATGAAGACA | + |
|
Preference number: 3 (lower is better) Translates to: IIVKVGSCLLGP*LGVFRGLQMKT Trigger: TGTCTTCATCTGTAGTCCTCTGAACACTCCCAACCATGGACCAAGAAGACATGATCCTACCTTGACAATAAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000048782.7 ENSMUST00000113251.10 |
||
| 3UTR CCA 72 bp | TCTGATCAACTAGGCTTCCTTATTTTTATACACAGTTaGGACCCAGTGTATGAAGTGGCACCAGCCATATAC | + |
|
Preference number: 3 (lower is better) Translates to: SDQLGFLIFIHS*DPVYEVAPAIY Trigger: GTATATGGCTGGTGCCACTTCATACACTGGGTCCCAACTGTGTATAAAAATAAGGAAGCCTAGTTGATCAGA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000048782.7 |
||
| CDS-3UTR GCA 90 bp | CCTGTGCTCAGCGATGCCACCCCAGGGTGGAGTTACACAGAGAGCCACGTTCACCCGTCTGGTAGTCTCTaGCAAGCCTTCTGGCTGTTG | + |
|
Preference number: 4 (lower is better) Translates to: PVLSDATPGWSYTESHVHPSGSL*QAFWLL Trigger: CAACAGCCAGAAGGCTTGGCAGAGACTACCAGACGG...GTGAACGTGGCTCTCTGTGTAACTCCACCCTGGGGTGGCATCGCTGAGCACAGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048782.7 |
||
| CDS-3UTR CCA 90 bp | CAGGCCCCTTGCCTTAGTCCCCCAAGTGCTGGGATCACAGACATGTGTCATTGTACCAGGCGGACAGGATaGAAGAGCACAACAGGGTCA | + |
|
Preference number: 4 (lower is better) Translates to: QAPCLSPPSAGITDMCHCTRRTG*KSTTGS Trigger: TGACCCTGTTGTGCTCTTCCATCCTGTCCGCCTGGT...ACAATGACACATGTCTGTGATCCCAGCACTTGGGGGACTAAGGCAAGGGGCCTG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000048782.7 |
||
| CDS-3UTR TCA 90 bp | CAGGCAAAAAGGCATTCAGCTAGCAGCAGAGTCTGGCTCCCCATCTCCCTGCCTGGCAGCTTTGACTTCTaGGACAAAGAACACGCACAG | + |
|
Preference number: 4 (lower is better) Translates to: QAKRHSASSRVWLPISLPGSFDF*DKEHAQ Trigger: CTGTGCGTGTTCTTTGTCTCAGAAGTCAAAGCTGCC...AGGCAGGGAGATGGGGAGCCAGACTCTGCTGCTAGCTGAATGCCTTTTTGCCTG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000048782.7 |
||
| CDS-3UTR TCA 90 bp | CCTGTGCTCAGCGATGCCACCCCAGGGTGGAGTTACACAGAGAGCCACGTTCACGAACAATGGCAGCTTTaGCTTCTGAGACAAAGAACA | + |
|
Preference number: 4 (lower is better) Translates to: PVLSDATPGWSYTESHVHEQWQL*LLRQRT Trigger: TGTTCTTTGTCTCAGAAGTCAAAGCTGCCATTGTTC...GTGAACGTGGCTCTCTGTGTAACTCCACCCTGGGGTGGCATCGCTGAGCACAGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048782.7 |
||
| CDS-3UTR TCA 90 bp | CCCCTTGCCTTAGTCCCCCAAGTGCTGGGATCACAGACATGTGTCATTGTTCCAGGTCATGTTTCAGGGTaGACTTCCCCATGTGGACTT | + |
|
Preference number: 4 (lower is better) Translates to: PLALVPQVLGSQTCVIVPGHVSG*TSPCGL Trigger: AAGTCCACATGGGGAAGTTCACCCTGAAACATGACC...TGGAACAATGACACATGTCTGTGATCCCAGCACTTGGGGGACTAAGGCAAGGGG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000048782.7 |
||
| CDS-3UTR TCA 90 bp | CAAAAAGGCATTCAGCTAGCAGCAGAGTCTGGCTCCCCATCTCCCTGCCTCTGGAGTTGTGTCACTGGGTaGGTATTTTGTGGTAATAAG | + |
|
Preference number: 4 (lower is better) Translates to: QKGIQLAAESGSPSPCLWSCVTG*VFCGNK Trigger: CTTATTACCACAAAATACTCACCCAGTGACACAACT...CCAGAGGCAGGGAGATGGGGAGCCAGACTCTGCTGCTAGCTGAATGCCTTTTTG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000048782.7 ENSMUST00000113251.10 |
||
| CDS-3UTR TCA 90 bp | CAGGCCCCTTGCCTTAGTCCCCCAAGTGCTGGGATCACAGACATGTGTCATTGTAAGTCCACAGATGACTaGAATAGTAACACTGGATGT | + |
|
Preference number: 4 (lower is better) Translates to: QAPCLSPPSAGITDMCHCKSTDD*NSNTGC Trigger: ACATCCAGTGTTACTATTTCAGTCATCTGTGGACTT...ACAATGACACATGTCTGTGATCCCAGCACTTGGGGGACTAAGGCAAGGGGCCTG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000048782.7 |
||
| CDS-3UTR TCA 90 bp | ACGTCACCGGTGATTACAGGTTCAATTCATGTCATAGCTCCTCCTCAGCCCCACAGTTGTGTCACTGGGTaGGTATTTTGTGGTAATAAG | + |
|
Preference number: 4 (lower is better) Translates to: TSPVITGSIHVIAPPQPHSCVTG*VFCGNK Trigger: CTTATTACCACAAAATACTCACCCAGTGACACAACT...GTGGGGCTGAGGAGGAGCTATGACATGAATTGAACCTGTAATCACCGGTGACGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000048782.7 ENSMUST00000113251.10 |
||
| 3UTR CAA 72 bp | TCCAGGTGTTTCCCAGGCAACAGCATCCAGCTTAACTaGATTTCTCTCTCCCAGTTGCATTATTGTCAAGGT | + |
|
Preference number: 4 (lower is better) Translates to: SRCFPGNSIQLN*ISLSQLHYCQG Trigger: ACCTTGACAATAATGCAACTGGGAGAGAGAAATCAAGTTAAGCTGGATGCTGTTGCCTGGGAAACACCTGGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000048782.7 ENSMUST00000113251.10 |
||
| 3UTR CAA 72 bp | GTGATGCGGTTTGATCTTGGGAACCTTTCGATGAAGTaGATTCCAGCCACTGCTGAAGTAGAAGGAATGGAT | + |
|
Preference number: 4 (lower is better) Translates to: VMRFDLGNLSMK*IPATAEVEGMD Trigger: ATCCATTCCTTCTACTTCAGCAGTGGCTGGAATCAACTTCATCGAAAGGTTCCCAAGATCAAACCGCATCAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000048782.7 ENSMUST00000113251.10 |
||
| CDS-3UTR TCA 90 bp | ACCCAACTATTTAGGGGGAATGGCCAGAGTGTTCTGGGAATGGTTTCCCCTTTTAAGTCCACAGATGACTaGAATAGTAACACTGGATGT | + |
|
Preference number: 4 (lower is better) Translates to: TQLFRGNGQSVLGMVSPFKSTDD*NSNTGC Trigger: ACATCCAGTGTTACTATTTCAGTCATCTGTGGACTT...AAAAGGGGAAACCATTCCCAGAACACTCTGGCCATTCCCCCTAAATAGTTGGGT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000048782.7 ENSMUST00000113251.10 |
||
| CDS-3UTR CCA 90 bp | AAATGCACACAGCATGTTGATGCCATCCATGTACTGATTCAATGCTACGGATACGTGAACTTCCCCATGTaGACTTCACTGGGTCTTGTA | + |
|
Preference number: 4 (lower is better) Translates to: KCTQHVDAIHVLIQCYGYVNFPM*TSLGLV Trigger: TACAAGACCCAGTGAAGTCCACATGGGGAAGTTCAC...GTATCCGTAGCATTGAATCAGTACATGGATGGCATCAACATGCTGTGTGCATTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048782.7 |
||
| 3UTR CAA 72 bp | AACAACAACAACAACAACACAGGTCACAGTCCCTTATaGTGGAGAAGTCGAGGCAGGAACTTAAGCACTAGT | + |
|
Preference number: 4 (lower is better) Translates to: NNNNNNTGHSPL*WRSRGRNLSTS Trigger: ACTAGTGCTTAAGTTCCTGCCTCGACTTCTCCACAATAAGGGACTGTGACCTGTGTTGTTGTTGTTGTTGTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048782.7 |
||
| 3UTR CAA 72 bp | GGCTCTCCTCCAGGGTGGTTTCTGGACTACTGCAAATaGAATAACCTAAGAAATATGACAGTTATCATACAA | + |
|
Preference number: 4 (lower is better) Translates to: GSPPGWFLDYCK*NNLRNMTVIIQ Trigger: TTGTATGATAACTGTCATATTTCTTAGGTTATTCAATTTGCAGTAGTCCAGAAACCACCCTGGAGGAGAGCC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048782.7 |
||
| CDS GCA 90 bp | TGTGTGACCACCAGGGTCAAGGGTTCCTTCCCGTCTGGTAGTCTCTaGCAAGCCTTCTGGCTGTTGGCATACTTCATGATGTTGAAGGGA | + |
|
Preference number: 5 (lower is better) Translates to: CVTTRVKGSFPSGSL*QAFWLLAYFMMLKG Trigger: TCCCTTCAACATCATGAAGTATGCCAACAGCCAGAAGGCTTGGCAGAGACTACCAGACGGGAAGGAACCCTTGACCCTGGTGGTCACACA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048782.7 |
||
| CDS-3UTR CAA 90 bp | CAGGCAAAAAGGCATTCAGCTAGCAGCAGAGTCTGGCTCCCCATCTCCCTGCCTATGAAAACCAGGCTCTaGCTGAGAAGTCCACAGATG | + |
|
Preference number: 5 (lower is better) Translates to: QAKRHSASSRVWLPISLPMKTRL*LRSPQM Trigger: CATCTGTGGACTTCTCAGCAAGAGCCTGGTTTTCAT...AGGCAGGGAGATGGGGAGCCAGACTCTGCTGCTAGCTGAATGCCTTTTTGCCTG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000048782.7 ENSMUST00000113251.10 |
||
| CDS CCA 90 bp | AGGGTCAAGGGTTCCTTCCCGTCTGGTAGTCTCTGCCAAGCCTTCTaGCTGTTGGCATACTTCATGATGTTGAAGGGACACTTCACTGTC | + |
|
Preference number: 5 (lower is better) Translates to: RVKGSFPSGSLCQAF*LLAYFMMLKGHFTV Trigger: GACAGTGAAGTGTCCCTTCAACATCATGAAGTATGCCAACAGCCAGAAGGCTTGGCAGAGACTACCAGACGGGAAGGAACCCTTGACCCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048782.7 |
||
| CDS TCA 90 bp | CTCTGTCAGCCTTGTAATAGGAATGATGACAGGAGTGAACACATCTaGAGAACCCTTGGTCACCACCAGGCGGACAGGATGGAAGAGCAC | + |
|
Preference number: 5 (lower is better) Translates to: LCQPCNRNDDRSEHI*RTLGHHQADRMEEH Trigger: GTGCTCTTCCATCCTGTCCGCCTGGTGGTGACCAAGGGTTCTTCAGATGTGTTCACTCCTGTCATCATTCCTATTACAAGGCTGACAGAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048782.7 |
||
| CDS-3UTR CAA 90 bp | CAGGCAAAAAGGCATTCAGCTAGCAGCAGAGTCTGGCTCCCCATCTCCCTGCCTAGAACAATGGCAGCTTaGACTTCTGAGACAAAGAAC | + |
|
Preference number: 5 (lower is better) Translates to: QAKRHSASSRVWLPISLPRTMAA*TSETKN Trigger: GTTCTTTGTCTCAGAAGTCAAAGCTGCCATTGTTCT...AGGCAGGGAGATGGGGAGCCAGACTCTGCTGCTAGCTGAATGCCTTTTTGCCTG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000048782.7 |
||
| CDS-3UTR CAA 90 bp | CCCCTTGCCTTAGTCCCCCAAGTGCTGGGATCACAGACATGTGTCATTGTTCCAATGAAAACCAGGCTCTaGCTGAGAAGTCCACAGATG | + |
|
Preference number: 5 (lower is better) Translates to: PLALVPQVLGSQTCVIVPMKTRL*LRSPQM Trigger: CATCTGTGGACTTCTCAGCAAGAGCCTGGTTTTCAT...TGGAACAATGACACATGTCTGTGATCCCAGCACTTGGGGGACTAAGGCAAGGGG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000048782.7 |
||
| CDS CAA 90 bp | AAGGGTTCCTTCCCGTCTGGTAGTCTCTGCCAAGCCTTCTGGCTGTaGGCATACTTCATGATGTTGAAGGGACACTTCACTGTCAAAGTC | + |
|
Preference number: 6 (lower is better) Translates to: KGSFPSGSLCQAFWL*AYFMMLKGHFTVKV Trigger: GACTTTGACAGTGAAGTGTCCCTTCAACATCATGAAGTATGCCAACAGCCAGAAGGCTTGGCAGAGACTACCAGACGGGAAGGAACCCTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048782.7 |
||
| CDS CAA 90 bp | CTTGTAATAGGAATGATGACAGGAGTGAACACATCTGAAGAACCCTaGGTCACCACCAGGCGGACAGGATGGAAGAGCACAACAGGGTCA | + |
|
Preference number: 6 (lower is better) Translates to: LVIGMMTGVNTSEEP*VTTRRTGWKSTTGS Trigger: TGACCCTGTTGTGCTCTTCCATCCTGTCCGCCTGGTGGTGACCAAGGGTTCTTCAGATGTGTTCACTCCTGTCATCATTCCTATTACAAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048782.7 |
||
| CDS TCA 72 bp | CCTTGTAATAGGAATGATGACAGGAGTGAACACATCTaGAGAACCCTTGGTCACCACCAGGCGGACAGGATG | + |
|
Preference number: 6 (lower is better) Translates to: PCNRNDDRSEHI*RTLGHHQADRM Trigger: CATCCTGTCCGCCTGGTGGTGACCAAGGGTTCTTCAGATGTGTTCACTCCTGTCATCATTCCTATTACAAGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048782.7 |
||
| CDS CAA 72 bp | TTCCCGTCTGGTAGTCTCTGCCAAGCCTTCTGGCTGTaGGCATACTTCATGATGTTGAAGGGACACTTCACT | + |
|
Preference number: 6 (lower is better) Translates to: FPSGSLCQAFWL*AYFMMLKGHFT Trigger: AGTGAAGTGTCCCTTCAACATCATGAAGTATGCCAACAGCCAGAAGGCTTGGCAGAGACTACCAGACGGGAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048782.7 |
||
| CDS CAA 72 bp | AGGTCATACCTTTCTTCCTCTAGAACAATGGCAGCTTaGACTTCTGAGACAAAGAACACGCACAGCAGTCCC | + |
|
Preference number: 6 (lower is better) Translates to: RSYLSSSRTMAA*TSETKNTHSSP Trigger: GGGACTGCTGTGCGTGTTCTTTGTCTCAGAAGTCAAAGCTGCCATTGTTCTAGAGGAAGAAAGGTATGACCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048782.7 |
||
| CDS CAA 72 bp | TTTGTGACAATGAATAAGATGATGAAAACCAGGCTCTaGCTGAGAAGTCCACAGATGACTGAAATAGTAACA | + |
|
Preference number: 6 (lower is better) Translates to: FVTMNKMMKTRL*LRSPQMTEIVT Trigger: TGTTACTATTTCAGTCATCTGTGGACTTCTCAGCAAGAGCCTGGTTTTCATCATCTTATTCATTGTCACAAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000048782.7 ENSMUST00000113251.10 |
||