RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for TREH (Mus musculus)

Ensembl gene IDs: ENSMUSG00000032098

Ensembl transcript IDs: ENSMUST00000034609.11, ENSMUST00000071219.12, ENSMUST00000139389.8, ENSMUST00000150822.2

Found 138 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp ACGCGTTCAGATCAGCGGGTACCATTTTGCTGGTTCGGATGCTGCTaGGCAAATCAGGGTCTGGGCCTCCAACAAGCCAGCGTGAAGAGA +
Preference number: 1 (lower is better)
Translates to: TRSDQRVPFCWFGCC*ANQGLGLQQASVKR
Trigger: TCTCTTCACGCTGGCTTGTTGGAGGCCCAGACCCTGATTTGCTCAGCAGCATCCGAACCAGCAAAATGGTACCCGCTGATCTGAACGCGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000139389.8
3UTR CCA 90 bp TGTCACTGTAGCAGAAGACTGAGAAGAAGGGCAGCCACTAGGCAGTaGGGTCCCAGGGAAGCTAACTGGGTCCCTGAAGTCAACTGGTCA +
Preference number: 1 (lower is better)
Translates to: CHCSRRLRRRAATRQ*GPREANWVPEVNWS
Trigger: TGACCAGTTGACTTCAGGGACCCAGTTAGCTTCCCTGGGACCCCACTGCCTAGTGGCTGCCCTTCTTCTCAGTCTTCTGCTACAGTGACA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000139389.8
3UTR CCA 90 bp GGAGTGGGGGCTGGCTCCGTTGCAGGTAATATATGCGTCCACCGTTaGGGATATGTCCGTAGGTCTTCACCAGATCCAGAAAGTTTTGCA +
Preference number: 1 (lower is better)
Translates to: GVGAGSVAGNICVHR*GYVRRSSPDPESFA
Trigger: TGCAAAACTTTCTGGATCTGGTGAAGACCTACGGACATATCCCCAACGGTGGACGCATATATTACCTGCAACGGAGCCAGCCCCCACTCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000139389.8
3UTR CCA 90 bp CACTTCTTGGCTCAGAACACTGTGAAAATTACAGTCTTGACCTCTTaGTCACTTCTTGGCTCAGGACACTATGAGCAGGAAGGGGCGGGG +
Preference number: 1 (lower is better)
Translates to: HFLAQNTVKITVLTS*SLLGSGHYEQEGAG
Trigger: CCCCGCCCCTTCCTGCTCATAGTGTCCTGAGCCAAGAAGTGACCAAGAGGTCAAGACTGTAATTTTCACAGTGTTCTGAGCCAAGAAGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000034609.11
ENSMUST00000071219.12
ENSMUST00000139389.8
3UTR CCA 90 bp GGCATTGGGGAAGTCCCACTGCTGGCCTGTGTTACGAAGAGAGGTTaGGATTCCATATTGGTAGGTCAAGATCTTGCTGTCCTCCAAGTA +
Preference number: 1 (lower is better)
Translates to: GIGEVPLLACVTKRG*DSILVGQDLAVLQV
Trigger: TACTTGGAGGACAGCAAGATCTTGACCTACCAATATGGAATCCCAACCTCTCTTCGTAACACAGGCCAGCAGTGGGACTTCCCCAATGCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000139389.8
3UTR CCA 90 bp CAGGATTCAGTTTCCGCCCTCGTGAAAATTACAACCTTGACCTCTTaGTCACTTCTTGGCTCAGAACACTGTGAAAATTACAGTCTTGAC +
Preference number: 1 (lower is better)
Translates to: QDSVSALVKITTLTS*SLLGSEHCENYSLD
Trigger: GTCAAGACTGTAATTTTCACAGTGTTCTGAGCCAAGAAGTGACCAAGAGGTCAAGGTTGTAATTTTCACGAGGGCGGAAACTGAATCCTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000034609.11
ENSMUST00000071219.12
ENSMUST00000139389.8
3UTR CAA 90 bp TCCTCTGCTTGGCACAGGAACGCGTTCAGATCAGCGGGTACCATTTaGCTGGTTCGGATGCTGCTGAGCAAATCAGGGTCTGGGCCTCCA +
Preference number: 2 (lower is better)
Translates to: SSAWHRNAFRSAGTI*LVRMLLSKSGSGPP
Trigger: TGGAGGCCCAGACCCTGATTTGCTCAGCAGCATCCGAACCAGCAAAATGGTACCCGCTGATCTGAACGCGTTCCTGTGCCAAGCAGAGGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000139389.8
3UTR-3UTR CCA 90 bp TCAGCCCACAGAGTCTCTCGGTCCCCTTCTGGCACAGAGTTTGCCAATTCTGCGTTTCCTGTAGGACTCTaGCCTGGGTCCCCCATAAGG +
Preference number: 2 (lower is better)
Translates to: SAHRVSRSPSGTEFANSAFPVGL*PGSPIR
Trigger: CCTTATGGGGGACCCAGGCCAGAGTCCTACAGGAAA...CGCAGAATTGGCAAACTCTGTGCCAGAAGGGGACCGAGAGACTCTGTGGGCTGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000139389.8
3UTR-3UTR TCA 90 bp CACTGTAGCAGAAGACTGAGAAGAAGGGCAGCCACTAGGCAGTGGGGTCCCAGGATAGCTTTGTCCTCCTaGGACTACAGAGACAGTCCT +
Preference number: 2 (lower is better)
Translates to: HCSRRLRRRAATRQWGPRIALSS*DYRDSP
Trigger: AGGACTGTCTCTGTAGTCTCAGGAGGACAAAGCTAT...CCTGGGACCCCACTGCCTAGTGGCTGCCCTTCTTCTCAGTCTTCTGCTACAGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000139389.8
3UTR-3UTR TCA 90 bp ATTCTGCGTCTTTCCTGTAGGACTCTGGCCTGGGTCCCCCATAAGGGACATAGTCATATCGATCCATCATaGGAGTCAGGAGTGGGGGCT +
Preference number: 2 (lower is better)
Translates to: ILRLSCRTLAWVPHKGHSHIDPS*ESGVGA
Trigger: AGCCCCCACTCCTGACTCTCATGATGGATCGATATG...ACTATGTCCCTTATGGGGGACCCAGGCCAGAGTCCTACAGGAAAGACGCAGAAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000139389.8
3UTR-3UTR GCA 90 bp CCAGAAGCATCAGGGCCAATCCGTTTGTCCAGCCAAATCCTTCCTGAACTTCATCTAATGACCAGGTCCTaGAGTGGGGCCCAGGCATTG +
Preference number: 2 (lower is better)
Translates to: PEASGPIRLSSQILPELHLMTRS*SGAQAL
Trigger: CAATGCCTGGGCCCCACTGCAGGACCTGGTCATTAG...ATGAAGTTCAGGAAGGATTTGGCTGGACAAACGGATTGGCCCTGATGCTTCTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000139389.8
ENSMUST00000150822.2
3UTR CAA 90 bp TACATATCGATCCATCATGAGAGTCAGGAGTGGGGGCTGGCTCCGTaGCAGGTAATATATGCGTCCACCGTTGGGGATATGTCCGTAGGT +
Preference number: 2 (lower is better)
Translates to: YISIHHESQEWGLAP*QVIYASTVGDMSVG
Trigger: ACCTACGGACATATCCCCAACGGTGGACGCATATATTACCTGCAACGGAGCCAGCCCCCACTCCTGACTCTCATGATGGATCGATATGTA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000139389.8
3UTR CAA 90 bp AGGCATTGGGGAAGTCCCACTGCTGGCCTGTGTTACGAAGAGAGGTaGGGATTCCATATTGGTAGGTCAAGATCTTGCTGTCCTCCAAGT +
Preference number: 2 (lower is better)
Translates to: RHWGSPTAGLCYEER*GFHIGRSRSCCPPS
Trigger: ACTTGGAGGACAGCAAGATCTTGACCTACCAATATGGAATCCCAACCTCTCTTCGTAACACAGGCCAGCAGTGGGACTTCCCCAATGCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000139389.8
3UTR-3UTR CCA 90 bp CTGGTCACCATAGCGATCCAGAAGCATCAGGGCCAATCCGTTTGTCCAGCCAAAACAGTCTTGACCTCTTaGTCACTTCTTGGCTCAGGA +
Preference number: 2 (lower is better)
Translates to: LVTIAIQKHQGQSVCPAKTVLTS*SLLGSG
Trigger: TCCTGAGCCAAGAAGTGACCAAGAGGTCAAGACTGT...TTTGGCTGGACAAACGGATTGGCCCTGATGCTTCTGGATCGCTATGGTGACCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000139389.8
3UTR-3UTR CCA 90 bp TCAGGGCCAATCCGTTTGTCCAGCCAAATCCTTCCTGAACTTCATACTCCCCTCGTTTTGATCCAATTCTaGGCCAGCTGGAAAGCCACC +
Preference number: 2 (lower is better)
Translates to: SGPIRLSSQILPELHTPLVLIQF*ASWKAT
Trigger: GGTGGCTTTCCAGCTGGCCCAGAATTGGATCAAAAC...GAGGGGAGTATGAAGTTCAGGAAGGATTTGGCTGGACAAACGGATTGGCCCTGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000139389.8
ENSMUST00000150822.2
3UTR CAA 90 bp GTCCCACTGCTGGCCTGTGTTACGAAGAGAGGTTGGGATTCCATATaGGTAGGTCAAGATCTTGCTGTCCTCCAAGTACTTCAGAGCCTT +
Preference number: 2 (lower is better)
Translates to: VPLLACVTKRGWDSI*VGQDLAVLQVLQSL
Trigger: AAGGCTCTGAAGTACTTGGAGGACAGCAAGATCTTGACCTACCAATATGGAATCCCAACCTCTCTTCGTAACACAGGCCAGCAGTGGGAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000139389.8
3UTR-3UTR TCA 90 bp CCAGAAGCATCAGGGCCAATCCGTTTGTCCAGCCAAATCCTTCCTGAACTTCATCTTCTCAAACATCGCTaGCTTTTGGGAGTAGACTTT +
Preference number: 2 (lower is better)
Translates to: PEASGPIRLSSQILPELHLLKHR*LLGVDF
Trigger: AAAGTCTACTCCCAAAAGTCAGCGATGTTTGAGAAG...ATGAAGTTCAGGAAGGATTTGGCTGGACAAACGGATTGGCCCTGATGCTTCTGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000139389.8
ENSMUST00000150822.2
3UTR GCA 72 bp GAAGCTGACTTGGCCAAACCTCTAATGACCAGGTCCTaGAGTGGGGCCCAGGCATTGGGGAAGTCCCACTGC +
Preference number: 3 (lower is better)
Translates to: EADLAKPLMTRS*SGAQALGKSHC
Trigger: GCAGTGGGACTTCCCCAATGCCTGGGCCCCACTGCAGGACCTGGTCATTAGAGGTTTGGCCAAGTCAGCTTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000139389.8
ENSMUST00000150822.2
3UTR CCA 72 bp AGCAGAAGACTGAGAAGAAGGGCAGCCACTAGGCAGTaGGGTCCCAGGGAAGCTAACTGGGTCCCTGAAGTC +
Preference number: 3 (lower is better)
Translates to: SRRLRRRAATRQ*GPREANWVPEV
Trigger: GACTTCAGGGACCCAGTTAGCTTCCCTGGGACCCCACTGCCTAGTGGCTGCCCTTCTTCTCAGTCTTCTGCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139389.8
ENSMUST00000150822.2
3UTR TCA 72 bp GCTAGAAGGGAGGTAGAGCAAGGGTTTAATGAACCATaGGCTGGGGCCAGGGGAGAAAGCGCAGGCAGTGAG +
Preference number: 3 (lower is better)
Translates to: ARREVEQGFNEP*AGARGESAGSE
Trigger: CTCACTGCCTGCGCTTTCTCCCCTGGCCCCAGCTCATGGTTCATTAAACCCTTGCTCTACCTCCCTTCTAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000034609.11
ENSMUST00000071219.12
ENSMUST00000139389.8
3UTR TCA 72 bp GATCAGCGGGTACCATTTTGCTGGTTCGGATGCTGCTaGGCAAATCAGGGTCTGGGCCTCCAACAAGCCAGC +
Preference number: 3 (lower is better)
Translates to: DQRVPFCWFGCC*ANQGLGLQQAS
Trigger: GCTGGCTTGTTGGAGGCCCAGACCCTGATTTGCTCAGCAGCATCCGAACCAGCAAAATGGTACCCGCTGATC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000139389.8
3UTR CCA 72 bp TGCAGTGGGGCCCAGGCATTGGGGAAGTCCCACTGCTaGCCTGTGTTACGAAGAGAGGTTGGGATTCCATAT +
Preference number: 3 (lower is better)
Translates to: CSGAQALGKSHC*PVLRREVGIPY
Trigger: ATATGGAATCCCAACCTCTCTTCGTAACACAGGCCAGCAGTGGGACTTCCCCAATGCCTGGGCCCCACTGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000139389.8
3UTR-3UTR CAA 90 bp ATTCTGCGTCTTTCCTGTAGGACTCTGGCCTGGGTCCCCCATAAGGGACATAGTTGGGGGCTGGCTCCGTaGCAGGTAATATATGCGTCC +
Preference number: 3 (lower is better)
Translates to: ILRLSCRTLAWVPHKGHSWGLAP*QVIYAS
Trigger: GGACGCATATATTACCTGCAACGGAGCCAGCCCCCA...ACTATGTCCCTTATGGGGGACCCAGGCCAGAGTCCTACAGGAAAGACGCAGAAT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000139389.8
3UTR GCA 72 bp TCAGGAGTGGGGGCTGGCTCCGTTGCAGGTAATATATaGGTCCACCGTTGGGGATATGTCCGTAGGTCTTCA +
Preference number: 3 (lower is better)
Translates to: SGVGAGSVAGNI*VHRWGYVRRSS
Trigger: TGAAGACCTACGGACATATCCCCAACGGTGGACGCATATATTACCTGCAACGGAGCCAGCCCCCACTCCTGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000139389.8
3UTR GCA 72 bp CCACAGAGTCTCTCGGTCCCCTTCTGGCACAGAGTTTaGCAATTCTGCGTCTTTCCTGTAGGACTCTGGCCT +
Preference number: 3 (lower is better)
Translates to: PQSLSVPFWHRV*QFCVFPVGLWP
Trigger: AGGCCAGAGTCCTACAGGAAAGACGCAGAATTGGCAAACTCTGTGCCAGAAGGGGACCGAGAGACTCTGTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000139389.8
3UTR-3UTR CAA 90 bp GGGCCCAGGCATTGGGGAAGTCCCACTGCTGGCCTGTGTTACGAAGAGAGGTTGCAGATCCAGAAAGTTTaGCAGCATACCCTTCACTGT +
Preference number: 3 (lower is better)
Translates to: GPRHWGSPTAGLCYEERLQIQKV*QHTLHC
Trigger: ACAGTGAAGGGTATGCTGCAAAACTTTCTGGATCTG...CAACCTCTCTTCGTAACACAGGCCAGCAGTGGGACTTCCCCAATGCCTGGGCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000139389.8
3UTR TCA 72 bp ACCATGAGCTGGGGCCAGGGGAGAAAGCGCAGGCAGTaGGTCCATTCTTGTTCTTGTCACTGTAGCAGAAGA +
Preference number: 3 (lower is better)
Translates to: TMSWGQGRKRRQ*VHSCSCHCSRR
Trigger: TCTTCTGCTACAGTGACAAGAACAAGAATGGACTCACTGCCTGCGCTTTCTCCCCTGGCCCCAGCTCATGGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000139389.8
3UTR-3UTR CAA 90 bp AACCATGAGCTGGGGCCAGGGGAGAAAGCGCAGGCAGTGAGTCCATTCTTGTTCTACAACCTTGACCTCTaGGTCACTTCTTGGCTCAGA +
Preference number: 3 (lower is better)
Translates to: NHELGPGEKAQAVSPFLFYNLDL*VTSWLR
Trigger: TCTGAGCCAAGAAGTGACCAAGAGGTCAAGGTTGTA...GAACAAGAATGGACTCACTGCCTGCGCTTTCTCCCCTGGCCCCAGCTCATGGTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000034609.11
ENSMUST00000071219.12
ENSMUST00000139389.8
3UTR CCA 72 bp GAAGTCCCACTGCTGGCCTGTGTTACGAAGAGAGGTTaGGATTCCATATTGGTAGGTCAAGATCTTGCTGTC +
Preference number: 3 (lower is better)
Translates to: EVPLLACVTKRG*DSILVGQDLAV
Trigger: GACAGCAAGATCTTGACCTACCAATATGGAATCCCAACCTCTCTTCGTAACACAGGCCAGCAGTGGGACTTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000139389.8
3UTR CCA 72 bp GCTCAGAACACTGTGAAAATTACAGTCTTGACCTCTTaGTCACTTCTTGGCTCAGGACACTATGAGCAGGAA +
Preference number: 3 (lower is better)
Translates to: AQNTVKITVLTS*SLLGSGHYEQE
Trigger: TTCCTGCTCATAGTGTCCTGAGCCAAGAAGTGACCAAGAGGTCAAGACTGTAATTTTCACAGTGTTCTGAGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034609.11
ENSMUST00000071219.12
ENSMUST00000139389.8
3UTR TCA 72 bp TCCACCGTTGCTGATGTCATACTTCTCAAACATCGCTaGCTTTTGGGAGTAGACTTTGAAGTTGGTTTTGAT +
Preference number: 3 (lower is better)
Translates to: STVADVILLKHR*LLGVDFEVGFD
Trigger: ATCAAAACCAACTTCAAAGTCTACTCCCAAAAGTCAGCGATGTTTGAGAAGTATGACATCAGCAACGGTGGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000139389.8
ENSMUST00000150822.2
CDS-3UTR CCA 90 bp CTAACTGGGTCCCTGAAGTCAACTGGTCACCATAGCGATCCAGAAGCATCAGGGGGTGGCAGGGCCTCCTaGGACCTAAGTCCCAGCCCC +
Preference number: 4 (lower is better)
Translates to: LTGSLKSTGHHSDPEASGGGRAS*DLSPSP
Trigger: GGGGCTGGGACTTAGGTCCCAGGAGGCCCTGCCACC...CCCTGATGCTTCTGGATCGCTATGGTGACCAGTTGACTTCAGGGACCCAGTTAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000139389.8
CDS-3UTR CCA 90 bp AACCATGAGCTGGGGCCAGGGGAGAAAGCGCAGGCAGTGAGTCCATTCTTGTTCAGATCTCTCACAGGGTaGTGGCAGGGCCTCCTGGGA +
Preference number: 4 (lower is better)
Translates to: NHELGPGEKAQAVSPFLFRSLTG*WQGLLG
Trigger: TCCCAGGAGGCCCTGCCACCACCCTGTGAGAGATCT...GAACAAGAATGGACTCACTGCCTGCGCTTTCTCCCCTGGCCCCAGCTCATGGTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071219.12
CDS-3UTR CCA 90 bp AACCATGAGCTGGGGCCAGGGGAGAAAGCGCAGGCAGTGAGTCCATTCTTGTTCGGGATGCTGTGGTTGTaGACTGTGGCCAGCTCACTG +
Preference number: 4 (lower is better)
Translates to: NHELGPGEKAQAVSPFLFGMLWL*TVASSL
Trigger: CAGTGAGCTGGCCACAGTCCACAACCACAGCATCCC...GAACAAGAATGGACTCACTGCCTGCGCTTTCTCCCCTGGCCCCAGCTCATGGTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000034609.11
ENSMUST00000071219.12
ENSMUST00000139389.8
CDS-3UTR CCA 90 bp AACCATGAGCTGGGGCCAGGGGAGAAAGCGCAGGCAGTGAGTCCATTCTTGTTCTCCTTGGGGATGCTGTaGTTGTGGACTGTGGCCAGC +
Preference number: 4 (lower is better)
Translates to: NHELGPGEKAQAVSPFLFSLGML*LWTVAS
Trigger: GCTGGCCACAGTCCACAACCACAGCATCCCCAAGGA...GAACAAGAATGGACTCACTGCCTGCGCTTTCTCCCCTGGCCCCAGCTCATGGTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000034609.11
ENSMUST00000071219.12
ENSMUST00000139389.8
CDS-3UTR TCA 90 bp AACCATGAGCTGGGGCCAGGGGAGAAAGCGCAGGCAGTGAGTCCATTCTTGTTCAGCAACACTAGGGTCTaGGAAGCAGCCAGCCCAAAG +
Preference number: 4 (lower is better)
Translates to: NHELGPGEKAQAVSPFLFSNTRV*EAASPK
Trigger: CTTTGGGCTGGCTGCTTCTCAGACCCTAGTGTTGCT...GAACAAGAATGGACTCACTGCCTGCGCTTTCTCCCCTGGCCCCAGCTCATGGTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000034609.11
ENSMUST00000071219.12
CDS-3UTR GCA 90 bp AACCATGAGCTGGGGCCAGGGGAGAAAGCGCAGGCAGTGAGTCCATTCTTGTTCGCTGTTCCTTGGGGATaGTGTGGTTGTGGACTGTGG +
Preference number: 4 (lower is better)
Translates to: NHELGPGEKAQAVSPFLFAVPWG*CGCGLW
Trigger: CCACAGTCCACAACCACAGCATCCCCAAGGAACAGC...GAACAAGAATGGACTCACTGCCTGCGCTTTCTCCCCTGGCCCCAGCTCATGGTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000034609.11
ENSMUST00000071219.12
ENSMUST00000139389.8
CDS-3UTR CCA 90 bp CCACTGCTGGCCTGTGTTACGAAGAGAGGTTGGGATTCCATATTGGTAGGTCAACTGGCTCTCACAGGGTaGTGGCAGGGCCTCCTGGGA +
Preference number: 4 (lower is better)
Translates to: PLLACVTKRGWDSILVGQLALTG*WQGLLG
Trigger: TCCCAGGAGGCCCTGCCACCACCCTGTGAGAGCCAG...TTGACCTACCAATATGGAATCCCAACCTCTCTTCGTAACACAGGCCAGCAGTGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000139389.8
CDS-3UTR CCA 90 bp CCTCTGCTTGGCACAGGAACGCGTTCAGATCAGCGGGTACCATTTTGCTGGTTCGGGATGCTGTGGTTGTaGACTGTGGCCAGCTCACTG +
Preference number: 4 (lower is better)
Translates to: PLLGTGTRSDQRVPFCWFGMLWL*TVASSL
Trigger: CAGTGAGCTGGCCACAGTCCACAACCACAGCATCCC...GAACCAGCAAAATGGTACCCGCTGATCTGAACGCGTTCCTGTGCCAAGCAGAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000139389.8
3UTR CAA 72 bp CCCACAGAGTCTCTCGGTCCCCTTCTGGCACAGAGTTaGCCAATTCTGCGTCTTTCCTGTAGGACTCTGGCC +
Preference number: 4 (lower is better)
Translates to: PTESLGPLLAQS*PILRLSCRTLA
Trigger: GGCCAGAGTCCTACAGGAAAGACGCAGAATTGGCAAACTCTGTGCCAGAAGGGGACCGAGAGACTCTGTGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000139389.8
CDS-3UTR TCA 90 bp AACCATGAGCTGGGGCCAGGGGAGAAAGCGCAGGCAGTGAGTCCATTCTTGTTCCATATCGATCCATCATaGGAGTCAGGAGTGGGGGCT +
Preference number: 4 (lower is better)
Translates to: NHELGPGEKAQAVSPFLFHIDPS*ESGVGA
Trigger: AGCCCCCACTCCTGACTCTCATGATGGATCGATATG...GAACAAGAATGGACTCACTGCCTGCGCTTTCTCCCCTGGCCCCAGCTCATGGTT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000034609.11
ENSMUST00000071219.12
CDS-3UTR CCA 90 bp GGGAAGCTAACTGGGTCCCTGAAGTCAACTGGTCACCATAGCGATCCAGAAGCATCCTTGGGGATGCTGTaGTTGTGGACTGTGGCCAGC +
Preference number: 4 (lower is better)
Translates to: GKLTGSLKSTGHHSDPEASLGML*LWTVAS
Trigger: GCTGGCCACAGTCCACAACCACAGCATCCCCAAGGA...TGCTTCTGGATCGCTATGGTGACCAGTTGACTTCAGGGACCCAGTTAGCTTCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000139389.8
CDS-3UTR CCA 90 bp AACCATGAGCTGGGGCCAGGGGAGAAAGCGCAGGCAGTGAGTCCATTCTTGTTCCCTGAAGCTGTTCCTTaGGGATGCTGTGGTTGTGGA +
Preference number: 4 (lower is better)
Translates to: NHELGPGEKAQAVSPFLFPEAVP*GCCGCG
Trigger: TCCACAACCACAGCATCCCCAAGGAACAGCTTCAGG...GAACAAGAATGGACTCACTGCCTGCGCTTTCTCCCCTGGCCCCAGCTCATGGTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000034609.11
ENSMUST00000071219.12
ENSMUST00000139389.8
CDS-3UTR TCA 90 bp CTGGTCACCATAGCGATCCAGAAGCATCAGGGCCAATCCGTTTGTCCAGCCAAATCCAACAAGCCAGCGTaGAGAGAAGTCCCAGCCAGA +
Preference number: 4 (lower is better)
Translates to: LVTIAIQKHQGQSVCPAKSNKPA*REVPAR
Trigger: TCTGGCTGGGACTTCTCTTCACGCTGGCTTGTTGGA...TTTGGCTGGACAAACGGATTGGCCCTGATGCTTCTGGATCGCTATGGTGACCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000150822.2
3UTR CAA 72 bp ATCCATCATGAGAGTCAGGAGTGGGGGCTGGCTCCGTaGCAGGTAATATATGCGTCCACCGTTGGGGATATG +
Preference number: 4 (lower is better)
Translates to: IHHESQEWGLAP*QVIYASTVGDM
Trigger: CATATCCCCAACGGTGGACGCATATATTACCTGCAACGGAGCCAGCCCCCACTCCTGACTCTCATGATGGAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000139389.8
CDS-3UTR TCA 90 bp AACCATGAGCTGGGGCCAGGGGAGAAAGCGCAGGCAGTGAGTCCATTCTTGTTCTGGAGATGTGGCCAGTaGCATATCCACAAACTGCTT +
Preference number: 4 (lower is better)
Translates to: NHELGPGEKAQAVSPFLFWRCGQ*HIHKLL
Trigger: AAGCAGTTTGTGGATATGTCACTGGCCACATCTCCA...GAACAAGAATGGACTCACTGCCTGCGCTTTCTCCCCTGGCCCCAGCTCATGGTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000034609.11
ENSMUST00000071219.12
ENSMUST00000139389.8
CDS-3UTR CCA 90 bp CACTTCTTGGCTCAGAACACTGTGAAAATTACAGTCTTGACCTCTTGGTCACTTGGTGGCAGGGCCTCCTaGGACCTAAGTCCCAGCCCC +
Preference number: 4 (lower is better)
Translates to: HFLAQNTVKITVLTSWSLGGRAS*DLSPSP
Trigger: GGGGCTGGGACTTAGGTCCCAGGAGGCCCTGCCACC...AAGTGACCAAGAGGTCAAGACTGTAATTTTCACAGTGTTCTGAGCCAAGAAGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034609.11
ENSMUST00000071219.12
ENSMUST00000139389.8
CDS-3UTR CCA 90 bp TTGGCTCAGAACACTGTGAAAATTACAGTCTTGACCTCTTGGTCACTTCTTGGCCTGGCTCTCACAGGGTaGTGGCAGGGCCTCCTGGGA +
Preference number: 4 (lower is better)
Translates to: LAQNTVKITVLTSWSLLGLALTG*WQGLLG
Trigger: TCCCAGGAGGCCCTGCCACCACCCTGTGAGAGCCAG...GCCAAGAAGTGACCAAGAGGTCAAGACTGTAATTTTCACAGTGTTCTGAGCCAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034609.11
ENSMUST00000139389.8
CDS-3UTR CCA 90 bp ACTGGTCACCATAGCGATCCAGAAGCATCAGGGCCAATCCGTTTGTCCAGCCAACCTGAAGCTGTTCCTTaGGGATGCTGTGGTTGTGGA +
Preference number: 4 (lower is better)
Translates to: TGHHSDPEASGPIRLSSQPEAVP*GCCGCG
Trigger: TCCACAACCACAGCATCCCCAAGGAACAGCTTCAGG...TTGGCTGGACAAACGGATTGGCCCTGATGCTTCTGGATCGCTATGGTGACCAGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000139389.8
CDS-3UTR CCA 90 bp GCATCAGGGCCAATCCGTTTGTCCAGCCAAATCCTTCCTGAACTTCATACTCCCTGTAGGACTCTGGCCTaGGTCCCCCATAAGGGACAT +
Preference number: 4 (lower is better)
Translates to: ASGPIRLSSQILPELHTPCRTLA*VPHKGH
Trigger: ATGTCCCTTATGGGGGACCCAGGCCAGAGTCCTACA...GGGAGTATGAAGTTCAGGAAGGATTTGGCTGGACAAACGGATTGGCCCTGATGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000150822.2
CDS-3UTR CCA 90 bp TCAGGGCCAATCCGTTTGTCCAGCCAAATCCTTCCTGAACTTCATACTCCCCTCTTTCCTGTAGGACTCTaGCCTGGGTCCCCCATAAGG +
Preference number: 4 (lower is better)
Translates to: SGPIRLSSQILPELHTPLFPVGL*PGSPIR
Trigger: CCTTATGGGGGACCCAGGCCAGAGTCCTACAGGAAA...GAGGGGAGTATGAAGTTCAGGAAGGATTTGGCTGGACAAACGGATTGGCCCTGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000150822.2
CDS-3UTR TCA 90 bp AACCATGAGCTGGGGCCAGGGGAGAAAGCGCAGGCAGTGAGTCCATTCTTGTTCGATGTCCACCGTTGCTaGTGTCATACTTCTCAAACA +
Preference number: 4 (lower is better)
Translates to: NHELGPGEKAQAVSPFLFDVHRC*CHTSQT
Trigger: TGTTTGAGAAGTATGACATCAGCAACGGTGGACATC...GAACAAGAATGGACTCACTGCCTGCGCTTTCTCCCCTGGCCCCAGCTCATGGTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000034609.11
ENSMUST00000071219.12
CDS-3UTR GCA 90 bp CCAGAAGCATCAGGGCCAATCCGTTTGTCCAGCCAAATCCTTCCTGAACTTCATGCTGTTCCTTGGGGATaGTGTGGTTGTGGACTGTGG +
Preference number: 4 (lower is better)
Translates to: PEASGPIRLSSQILPELHAVPWG*CGCGLW
Trigger: CCACAGTCCACAACCACAGCATCCCCAAGGAACAGC...ATGAAGTTCAGGAAGGATTTGGCTGGACAAACGGATTGGCCCTGATGCTTCTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000139389.8
CDS-3UTR GCA 90 bp AACCATGAGCTGGGGCCAGGGGAGAAAGCGCAGGCAGTGAGTCCATTCTTGTTCTTCTGGCACAGAGTTTaGCAATTCTGCGTCTTTCCT +
Preference number: 4 (lower is better)
Translates to: NHELGPGEKAQAVSPFLFFWHRV*QFCVFP
Trigger: AGGAAAGACGCAGAATTGGCAAACTCTGTGCCAGAA...GAACAAGAATGGACTCACTGCCTGCGCTTTCTCCCCTGGCCCCAGCTCATGGTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000034609.11
ENSMUST00000071219.12
CDS-3UTR CCA 90 bp CACTTCTTGGCTCAGAACACTGTGAAAATTACAGTCTTGACCTCTTGGTCACTTGTGGGGCCCAGGCATTaGGGAAGTCCCACTGCTGGC +
Preference number: 4 (lower is better)
Translates to: HFLAQNTVKITVLTSWSLVGPRH*GSPTAG
Trigger: GCCAGCAGTGGGACTTCCCCAATGCCTGGGCCCCAC...AAGTGACCAAGAGGTCAAGACTGTAATTTTCACAGTGTTCTGAGCCAAGAAGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000034609.11
ENSMUST00000071219.12
CDS-3UTR TCA 90 bp ATTCTGCGTCTTTCCTGTAGGACTCTGGCCTGGGTCCCCCATAAGGGACATAGTTGGAGATGTGGCCAGTaGCATATCCACAAACTGCTT +
Preference number: 4 (lower is better)
Translates to: ILRLSCRTLAWVPHKGHSWRCGQ*HIHKLL
Trigger: AAGCAGTTTGTGGATATGTCACTGGCCACATCTCCA...ACTATGTCCCTTATGGGGGACCCAGGCCAGAGTCCTACAGGAAAGACGCAGAAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000139389.8
CDS-3UTR TCA 90 bp AACCATGAGCTGGGGCCAGGGGAGAAAGCGCAGGCAGTGAGTCCATTCTTGTTCCTTCTCAAACATCGCTaGCTTTTGGGAGTAGACTTT +
Preference number: 4 (lower is better)
Translates to: NHELGPGEKAQAVSPFLFLLKHR*LLGVDF
Trigger: AAAGTCTACTCCCAAAAGTCAGCGATGTTTGAGAAG...GAACAAGAATGGACTCACTGCCTGCGCTTTCTCCCCTGGCCCCAGCTCATGGTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000034609.11
ENSMUST00000071219.12
CDS-3UTR CCA 90 bp TCAGGGCCAATCCGTTTGTCCAGCCAAATCCTTCCTGAACTTCATACTCCCCTCATCAGTTCCTCTGCTTaGCACAGGAACGCGTTCAGA +
Preference number: 4 (lower is better)
Translates to: SGPIRLSSQILPELHTPLISSSA*HRNAFR
Trigger: TCTGAACGCGTTCCTGTGCCAAGCAGAGGAACTGAT...GAGGGGAGTATGAAGTTCAGGAAGGATTTGGCTGGACAAACGGATTGGCCCTGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000150822.2
CDS-3UTR CCA 90 bp AACCATGAGCTGGGGCCAGGGGAGAAAGCGCAGGCAGTGAGTCCATTCTTGTTCGTTACGAAGAGAGGTTaGGATTCCATATTGGTAGGT +
Preference number: 4 (lower is better)
Translates to: NHELGPGEKAQAVSPFLFVTKRG*DSILVG
Trigger: ACCTACCAATATGGAATCCCAACCTCTCTTCGTAAC...GAACAAGAATGGACTCACTGCCTGCGCTTTCTCCCCTGGCCCCAGCTCATGGTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000034609.11
ENSMUST00000071219.12
CDS-3UTR CCA 90 bp TTGGCTCAGAACACTGTGAAAATTACAGTCTTGACCTCTTGGTCACTTCTTGGCGCAGCCACTAGGCAGTaGGGTCCCAGGGAAGCTAAC +
Preference number: 4 (lower is better)
Translates to: LAQNTVKITVLTSWSLLGAATRQ*GPREAN
Trigger: GTTAGCTTCCCTGGGACCCCACTGCCTAGTGGCTGC...GCCAAGAAGTGACCAAGAGGTCAAGACTGTAATTTTCACAGTGTTCTGAGCCAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034609.11
ENSMUST00000071219.12
3UTR CAA 72 bp CACCATAGCGATCCAGAAGCATCAGGGCCAATCCGTTaGTCCAGCCAAATCCTTCCTGAACTTCATACTCCC +
Preference number: 4 (lower is better)
Translates to: HHSDPEASGPIR*SSQILPELHTP
Trigger: GGGAGTATGAAGTTCAGGAAGGATTTGGCTGGACAAACGGATTGGCCCTGATGCTTCTGGATCGCTATGGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139389.8
ENSMUST00000150822.2
CDS-3UTR GCA 90 bp GGGAAGCTAACTGGGTCCCTGAAGTCAACTGGTCACCATAGCGATCCAGAAGCAAGAGTTTGCCAATTCTaGGTCTTTCCTGTAGGACTC +
Preference number: 4 (lower is better)
Translates to: GKLTGSLKSTGHHSDPEARVCQF*VFPVGL
Trigger: GAGTCCTACAGGAAAGACGCAGAATTGGCAAACTCT...TGCTTCTGGATCGCTATGGTGACCAGTTGACTTCAGGGACCCAGTTAGCTTCCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000150822.2
CDS-3UTR GCA 90 bp TTGGCTCAGAACACTGTGAAAATTACAGTCTTGACCTCTTGGTCACTTCTTGGCCTAATGACCAGGTCCTaGAGTGGGGCCCAGGCATTG +
Preference number: 4 (lower is better)
Translates to: LAQNTVKITVLTSWSLLGLMTRS*SGAQAL
Trigger: CAATGCCTGGGCCCCACTGCAGGACCTGGTCATTAG...GCCAAGAAGTGACCAAGAGGTCAAGACTGTAATTTTCACAGTGTTCTGAGCCAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000034609.11
ENSMUST00000071219.12
CDS-3UTR CCA 90 bp TTGGCTCAGAACACTGTGAAAATTACAGTCTTGACCTCTTGGTCACTTCTTGGCGGGATGCTGTGGTTGTaGACTGTGGCCAGCTCACTG +
Preference number: 4 (lower is better)
Translates to: LAQNTVKITVLTSWSLLGGMLWL*TVASSL
Trigger: CAGTGAGCTGGCCACAGTCCACAACCACAGCATCCC...GCCAAGAAGTGACCAAGAGGTCAAGACTGTAATTTTCACAGTGTTCTGAGCCAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034609.11
ENSMUST00000071219.12
ENSMUST00000139389.8
CDS-3UTR CCA 90 bp TTGGCTCAGAACACTGTGAAAATTACAGTCTTGACCTCTTGGTCACTTCTTGGCTCCTTGGGGATGCTGTaGTTGTGGACTGTGGCCAGC +
Preference number: 4 (lower is better)
Translates to: LAQNTVKITVLTSWSLLGSLGML*LWTVAS
Trigger: GCTGGCCACAGTCCACAACCACAGCATCCCCAAGGA...GCCAAGAAGTGACCAAGAGGTCAAGACTGTAATTTTCACAGTGTTCTGAGCCAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000034609.11
ENSMUST00000071219.12
ENSMUST00000139389.8
CDS-3UTR CCA 90 bp TTGGCTCAGAACACTGTGAAAATTACAGTCTTGACCTCTTGGTCACTTCTTGGCGCAGCCAGCCCAAAGTaGGGAGAGGTTGGAGGGATA +
Preference number: 4 (lower is better)
Translates to: LAQNTVKITVLTSWSLLGAASPK*GEVGGI
Trigger: TATCCCTCCAACCTCTCCCCACTTTGGGCTGGCTGC...GCCAAGAAGTGACCAAGAGGTCAAGACTGTAATTTTCACAGTGTTCTGAGCCAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034609.11
ENSMUST00000071219.12
3UTR CAA 72 bp GGAAGTCCCACTGCTGGCCTGTGTTACGAAGAGAGGTaGGGATTCCATATTGGTAGGTCAAGATCTTGCTGT +
Preference number: 4 (lower is better)
Translates to: GSPTAGLCYEER*GFHIGRSRSCC
Trigger: ACAGCAAGATCTTGACCTACCAATATGGAATCCCAACCTCTCTTCGTAACACAGGCCAGCAGTGGGACTTCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000139389.8
CDS-3UTR TCA 90 bp TTGGCTCAGAACACTGTGAAAATTACAGTCTTGACCTCTTGGTCACTTCTTGGCATCTTCTGCAGGAACTaGGGGCTGTCCTTCCAGTCC +
Preference number: 4 (lower is better)
Translates to: LAQNTVKITVLTSWSLLGIFCRN*GLSFQS
Trigger: GGACTGGAAGGACAGCCCTCAGTTCCTGCAGAAGAT...GCCAAGAAGTGACCAAGAGGTCAAGACTGTAATTTTCACAGTGTTCTGAGCCAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000034609.11
ENSMUST00000071219.12
ENSMUST00000139389.8
CDS-3UTR TCA 90 bp TTGGCTCAGAACACTGTGAAAATTACAGTCTTGACCTCTTGGTCACTTCTTGGCTCCAACAAGCCAGCGTaGAGAGAAGTCCCAGCCAGA +
Preference number: 4 (lower is better)
Translates to: LAQNTVKITVLTSWSLLGSNKPA*REVPAR
Trigger: TCTGGCTGGGACTTCTCTTCACGCTGGCTTGTTGGA...GCCAAGAAGTGACCAAGAGGTCAAGACTGTAATTTTCACAGTGTTCTGAGCCAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034609.11
ENSMUST00000071219.12
CDS-3UTR TCA 90 bp TTGGCTCAGAACACTGTGAAAATTACAGTCTTGACCTCTTGGTCACTTCTTGGCAGCAACACTAGGGTCTaGGAAGCAGCCAGCCCAAAG +
Preference number: 4 (lower is better)
Translates to: LAQNTVKITVLTSWSLLGSNTRV*EAASPK
Trigger: CTTTGGGCTGGCTGCTTCTCAGACCCTAGTGTTGCT...GCCAAGAAGTGACCAAGAGGTCAAGACTGTAATTTTCACAGTGTTCTGAGCCAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034609.11
ENSMUST00000071219.12
CDS-3UTR GCA 90 bp CACTTCTTGGCTCAGAACACTGTGAAAATTACAGTCTTGACCTCTTGGTCACTTCTAATGACCAGGTCCTaGAGTGGGGCCCAGGCATTG +
Preference number: 4 (lower is better)
Translates to: HFLAQNTVKITVLTSWSLLMTRS*SGAQAL
Trigger: CAATGCCTGGGCCCCACTGCAGGACCTGGTCATTAG...AAGTGACCAAGAGGTCAAGACTGTAATTTTCACAGTGTTCTGAGCCAAGAAGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000034609.11
ENSMUST00000071219.12
CDS-3UTR CCA 90 bp TTGGCTCAGAACACTGTGAAAATTACAGTCTTGACCTCTTGGTCACTTCTTGGCTGTAGGACTCTGGCCTaGGTCCCCCATAAGGGACAT +
Preference number: 4 (lower is better)
Translates to: LAQNTVKITVLTSWSLLGCRTLA*VPHKGH
Trigger: ATGTCCCTTATGGGGGACCCAGGCCAGAGTCCTACA...GCCAAGAAGTGACCAAGAGGTCAAGACTGTAATTTTCACAGTGTTCTGAGCCAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000034609.11
ENSMUST00000071219.12
CDS-3UTR CCA 90 bp TTGGCTCAGAACACTGTGAAAATTACAGTCTTGACCTCTTGGTCACTTCTTGGCTTTCCTGTAGGACTCTaGCCTGGGTCCCCCATAAGG +
Preference number: 4 (lower is better)
Translates to: LAQNTVKITVLTSWSLLGFPVGL*PGSPIR
Trigger: CCTTATGGGGGACCCAGGCCAGAGTCCTACAGGAAA...GCCAAGAAGTGACCAAGAGGTCAAGACTGTAATTTTCACAGTGTTCTGAGCCAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000034609.11
ENSMUST00000071219.12
CDS-3UTR CCA 90 bp TCACTTCTTGGCTCAGAACACTGTGAAAATTACAGTCTTGACCTCTTGGTCACTGCAGCCAGCCCAAAGTaGGGAGAGGTTGGAGGGATA +
Preference number: 4 (lower is better)
Translates to: SLLGSEHCENYSLDLLVTAASPK*GEVGGI
Trigger: TATCCCTCCAACCTCTCCCCACTTTGGGCTGGCTGC...AGTGACCAAGAGGTCAAGACTGTAATTTTCACAGTGTTCTGAGCCAAGAAGTGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034609.11
ENSMUST00000071219.12
CDS-3UTR TCA 90 bp TCACTTCTTGGCTCAGAACACTGTGAAAATTACAGTCTTGACCTCTTGGTCACTATCTTCTGCAGGAACTaGGGGCTGTCCTTCCAGTCC +
Preference number: 4 (lower is better)
Translates to: SLLGSEHCENYSLDLLVTIFCRN*GLSFQS
Trigger: GGACTGGAAGGACAGCCCTCAGTTCCTGCAGAAGAT...AGTGACCAAGAGGTCAAGACTGTAATTTTCACAGTGTTCTGAGCCAAGAAGTGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000034609.11
ENSMUST00000071219.12
ENSMUST00000139389.8
CDS-3UTR TCA 90 bp CAGAAGCATCAGGGCCAATCCGTTTGTCCAGCCAAATCCTTCCTGAACTTCATAATAGCTTTGTCCTCCTaGGACTACAGAGACAGTCCT +
Preference number: 4 (lower is better)
Translates to: QKHQGQSVCPAKSFLNFIIALSS*DYRDSP
Trigger: AGGACTGTCTCTGTAGTCTCAGGAGGACAAAGCTAT...TATGAAGTTCAGGAAGGATTTGGCTGGACAAACGGATTGGCCCTGATGCTTCTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000150822.2
CDS-3UTR TCA 90 bp CACTTCTTGGCTCAGAACACTGTGAAAATTACAGTCTTGACCTCTTGGTCACTTTCCAACAAGCCAGCGTaGAGAGAAGTCCCAGCCAGA +
Preference number: 4 (lower is better)
Translates to: HFLAQNTVKITVLTSWSLSNKPA*REVPAR
Trigger: TCTGGCTGGGACTTCTCTTCACGCTGGCTTGTTGGA...AAGTGACCAAGAGGTCAAGACTGTAATTTTCACAGTGTTCTGAGCCAAGAAGTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034609.11
ENSMUST00000071219.12
CDS-3UTR CCA 90 bp TCACTTCTTGGCTCAGAACACTGTGAAAATTACAGTCTTGACCTCTTGGTCACTTGTAGGACTCTGGCCTaGGTCCCCCATAAGGGACAT +
Preference number: 4 (lower is better)
Translates to: SLLGSEHCENYSLDLLVTCRTLA*VPHKGH
Trigger: ATGTCCCTTATGGGGGACCCAGGCCAGAGTCCTACA...AGTGACCAAGAGGTCAAGACTGTAATTTTCACAGTGTTCTGAGCCAAGAAGTGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000034609.11
ENSMUST00000071219.12
CDS-3UTR CCA 90 bp TCACTTCTTGGCTCAGAACACTGTGAAAATTACAGTCTTGACCTCTTGGTCACTTTTCCTGTAGGACTCTaGCCTGGGTCCCCCATAAGG +
Preference number: 4 (lower is better)
Translates to: SLLGSEHCENYSLDLLVTFPVGL*PGSPIR
Trigger: CCTTATGGGGGACCCAGGCCAGAGTCCTACAGGAAA...AGTGACCAAGAGGTCAAGACTGTAATTTTCACAGTGTTCTGAGCCAAGAAGTGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000034609.11
ENSMUST00000071219.12
CDS-3UTR TCA 90 bp TCACTTCTTGGCTCAGAACACTGTGAAAATTACAGTCTTGACCTCTTGGTCACTCATATCGATCCATCATaGGAGTCAGGAGTGGGGGCT +
Preference number: 4 (lower is better)
Translates to: SLLGSEHCENYSLDLLVTHIDPS*ESGVGA
Trigger: AGCCCCCACTCCTGACTCTCATGATGGATCGATATG...AGTGACCAAGAGGTCAAGACTGTAATTTTCACAGTGTTCTGAGCCAAGAAGTGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000034609.11
ENSMUST00000071219.12
CDS-3UTR GCA 90 bp CAGAAGCATCAGGGCCAATCCGTTTGTCCAGCCAAATCCTTCCTGAACTTCATATTCTGGCACAGAGTTTaGCAATTCTGCGTCTTTCCT +
Preference number: 4 (lower is better)
Translates to: QKHQGQSVCPAKSFLNFIFWHRV*QFCVFP
Trigger: AGGAAAGACGCAGAATTGGCAAACTCTGTGCCAGAA...TATGAAGTTCAGGAAGGATTTGGCTGGACAAACGGATTGGCCCTGATGCTTCTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000150822.2
CDS-3UTR CCA 90 bp CACTTCTTGGCTCAGAACACTGTGAAAATTACAGTCTTGACCTCTTGGTCACTTCCTGAAGCTGTTCCTTaGGGATGCTGTGGTTGTGGA +
Preference number: 4 (lower is better)
Translates to: HFLAQNTVKITVLTSWSLPEAVP*GCCGCG
Trigger: TCCACAACCACAGCATCCCCAAGGAACAGCTTCAGG...AAGTGACCAAGAGGTCAAGACTGTAATTTTCACAGTGTTCTGAGCCAAGAAGTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034609.11
ENSMUST00000071219.12
ENSMUST00000139389.8
CDS-3UTR CCA 90 bp TTGGCTCAGAACACTGTGAAAATTACAGTCTTGACCTCTTGGTCACTTCTTGGCGGTTCCTGTACTTTGTaGCCTCTGTGTCGTTCCCTA +
Preference number: 4 (lower is better)
Translates to: LAQNTVKITVLTSWSLLGGSCTL*PLCRSL
Trigger: TAGGGAACGACACAGAGGCCACAAAGTACAGGAACC...GCCAAGAAGTGACCAAGAGGTCAAGACTGTAATTTTCACAGTGTTCTGAGCCAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034609.11
ENSMUST00000071219.12
CDS-3UTR CCA 90 bp TTGGCTCAGAACACTGTGAAAATTACAGTCTTGACCTCTTGGTCACTTCTTGGCGTTTTGATCCAATTCTaGGCCAGCTGGAAAGCCACC +
Preference number: 4 (lower is better)
Translates to: LAQNTVKITVLTSWSLLGVLIQF*ASWKAT
Trigger: GGTGGCTTTCCAGCTGGCCCAGAATTGGATCAAAAC...GCCAAGAAGTGACCAAGAGGTCAAGACTGTAATTTTCACAGTGTTCTGAGCCAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000034609.11
ENSMUST00000071219.12
CDS-3UTR TCA 90 bp TTGGCTCAGAACACTGTGAAAATTACAGTCTTGACCTCTTGGTCACTTCTTGGCTGGAGATGTGGCCAGTaGCATATCCACAAACTGCTT +
Preference number: 4 (lower is better)
Translates to: LAQNTVKITVLTSWSLLGWRCGQ*HIHKLL
Trigger: AAGCAGTTTGTGGATATGTCACTGGCCACATCTCCA...GCCAAGAAGTGACCAAGAGGTCAAGACTGTAATTTTCACAGTGTTCTGAGCCAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034609.11
ENSMUST00000071219.12
ENSMUST00000139389.8
CDS-3UTR TCA 90 bp TTGGCTCAGAACACTGTGAAAATTACAGTCTTGACCTCTTGGTCACTTCTTGGCATAGCTTTGTCCTCCTaGGACTACAGAGACAGTCCT +
Preference number: 4 (lower is better)
Translates to: LAQNTVKITVLTSWSLLGIALSS*DYRDSP
Trigger: AGGACTGTCTCTGTAGTCTCAGGAGGACAAAGCTAT...GCCAAGAAGTGACCAAGAGGTCAAGACTGTAATTTTCACAGTGTTCTGAGCCAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034609.11
ENSMUST00000071219.12
CDS-3UTR TCA 90 bp CACTTCTTGGCTCAGAACACTGTGAAAATTACAGTCTTGACCTCTTGGTCACTTACTGTAGCAGAAGACTaGGAAGAAGGGCAGCCACTA +
Preference number: 4 (lower is better)
Translates to: HFLAQNTVKITVLTSWSLTVAED*EEGQPL
Trigger: TAGTGGCTGCCCTTCTTCTCAGTCTTCTGCTACAGT...AAGTGACCAAGAGGTCAAGACTGTAATTTTCACAGTGTTCTGAGCCAAGAAGTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034609.11
ENSMUST00000071219.12
CDS-3UTR CCA 90 bp CACTTCTTGGCTCAGAACACTGTGAAAATTACAGTCTTGACCTCTTGGTCACTTATCAGTTCCTCTGCTTaGCACAGGAACGCGTTCAGA +
Preference number: 4 (lower is better)
Translates to: HFLAQNTVKITVLTSWSLISSSA*HRNAFR
Trigger: TCTGAACGCGTTCCTGTGCCAAGCAGAGGAACTGAT...AAGTGACCAAGAGGTCAAGACTGTAATTTTCACAGTGTTCTGAGCCAAGAAGTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034609.11
ENSMUST00000071219.12
CDS-3UTR CCA 90 bp TCACTTCTTGGCTCAGAACACTGTGAAAATTACAGTCTTGACCTCTTGGTCACTATCAGTTCCTCTGCTTaGCACAGGAACGCGTTCAGA +
Preference number: 4 (lower is better)
Translates to: SLLGSEHCENYSLDLLVTISSSA*HRNAFR
Trigger: TCTGAACGCGTTCCTGTGCCAAGCAGAGGAACTGAT...AGTGACCAAGAGGTCAAGACTGTAATTTTCACAGTGTTCTGAGCCAAGAAGTGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034609.11
ENSMUST00000071219.12
CDS-3UTR CCA 90 bp TCACTTCTTGGCTCAGAACACTGTGAAAATTACAGTCTTGACCTCTTGGTCACTGGTTCCTGTACTTTGTaGCCTCTGTGTCGTTCCCTA +
Preference number: 4 (lower is better)
Translates to: SLLGSEHCENYSLDLLVTGSCTL*PLCRSL
Trigger: TAGGGAACGACACAGAGGCCACAAAGTACAGGAACC...AGTGACCAAGAGGTCAAGACTGTAATTTTCACAGTGTTCTGAGCCAAGAAGTGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034609.11
ENSMUST00000071219.12
CDS-3UTR CCA 90 bp CACTTCTTGGCTCAGAACACTGTGAAAATTACAGTCTTGACCTCTTGGTCACTTGTTTTGATCCAATTCTaGGCCAGCTGGAAAGCCACC +
Preference number: 4 (lower is better)
Translates to: HFLAQNTVKITVLTSWSLVLIQF*ASWKAT
Trigger: GGTGGCTTTCCAGCTGGCCCAGAATTGGATCAAAAC...AAGTGACCAAGAGGTCAAGACTGTAATTTTCACAGTGTTCTGAGCCAAGAAGTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000034609.11
ENSMUST00000071219.12
CDS-3UTR TCA 90 bp TCACTTCTTGGCTCAGAACACTGTGAAAATTACAGTCTTGACCTCTTGGTCACTCATACCCTTCACTGTTaGGGCCATCTCAGAAAGAAG +
Preference number: 4 (lower is better)
Translates to: SLLGSEHCENYSLDLLVTHTLHC*GHLRKK
Trigger: CTTCTTTCTGAGATGGCCTCAACAGTGAAGGGTATG...AGTGACCAAGAGGTCAAGACTGTAATTTTCACAGTGTTCTGAGCCAAGAAGTGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034609.11
ENSMUST00000071219.12
CDS-3UTR TCA 90 bp CACTTCTTGGCTCAGAACACTGTGAAAATTACAGTCTTGACCTCTTGGTCACTTCATACCCTTCACTGTTaGGGCCATCTCAGAAAGAAG +
Preference number: 4 (lower is better)
Translates to: HFLAQNTVKITVLTSWSLHTLHC*GHLRKK
Trigger: CTTCTTTCTGAGATGGCCTCAACAGTGAAGGGTATG...AAGTGACCAAGAGGTCAAGACTGTAATTTTCACAGTGTTCTGAGCCAAGAAGTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034609.11
ENSMUST00000071219.12
CDS-3UTR TCA 90 bp TCACTTCTTGGCTCAGAACACTGTGAAAATTACAGTCTTGACCTCTTGGTCACTATAGCTTTGTCCTCCTaGGACTACAGAGACAGTCCT +
Preference number: 4 (lower is better)
Translates to: SLLGSEHCENYSLDLLVTIALSS*DYRDSP
Trigger: AGGACTGTCTCTGTAGTCTCAGGAGGACAAAGCTAT...AGTGACCAAGAGGTCAAGACTGTAATTTTCACAGTGTTCTGAGCCAAGAAGTGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034609.11
ENSMUST00000071219.12
CDS-3UTR GCA 90 bp TTGGCTCAGAACACTGTGAAAATTACAGTCTTGACCTCTTGGTCACTTCTTGGCAGAGTTTGCCAATTCTaGGTCTTTCCTGTAGGACTC +
Preference number: 4 (lower is better)
Translates to: LAQNTVKITVLTSWSLLGRVCQF*VFPVGL
Trigger: GAGTCCTACAGGAAAGACGCAGAATTGGCAAACTCT...GCCAAGAAGTGACCAAGAGGTCAAGACTGTAATTTTCACAGTGTTCTGAGCCAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034609.11
ENSMUST00000071219.12
CDS-3UTR CCA 90 bp TCACTTCTTGGCTCAGAACACTGTGAAAATTACAGTCTTGACCTCTTGGTCACTAAAGTGGGGAGAGGTTaGAGGGATAAAACTCCAGGT +
Preference number: 4 (lower is better)
Translates to: SLLGSEHCENYSLDLLVTKVGRG*RDKTPG
Trigger: ACCTGGAGTTTTATCCCTCCAACCTCTCCCCACTTT...AGTGACCAAGAGGTCAAGACTGTAATTTTCACAGTGTTCTGAGCCAAGAAGTGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000034609.11
ENSMUST00000071219.12
CDS-3UTR CCA 90 bp CACTTCTTGGCTCAGAACACTGTGAAAATTACAGTCTTGACCTCTTGGTCACTTAAAGTGGGGAGAGGTTaGAGGGATAAAACTCCAGGT +
Preference number: 4 (lower is better)
Translates to: HFLAQNTVKITVLTSWSLKVGRG*RDKTPG
Trigger: ACCTGGAGTTTTATCCCTCCAACCTCTCCCCACTTT...AAGTGACCAAGAGGTCAAGACTGTAATTTTCACAGTGTTCTGAGCCAAGAAGTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000034609.11
ENSMUST00000071219.12
CDS-3UTR GCA 90 bp CACTTCTTGGCTCAGAACACTGTGAAAATTACAGTCTTGACCTCTTGGTCACTTGTAGCTGAGGACTTCTaGTTTCATCTTCTTTCCCAG +
Preference number: 4 (lower is better)
Translates to: HFLAQNTVKITVLTSWSLVAEDF*FHLLSQ
Trigger: CTGGGAAAGAAGATGAAAGCAGAAGTCCTCAGCTAC...AAGTGACCAAGAGGTCAAGACTGTAATTTTCACAGTGTTCTGAGCCAAGAAGTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034609.11
CDS-3UTR GCA 90 bp CACTTCTTGGCTCAGAACACTGTGAAAATTACAGTCTTGACCTCTTGGTCACTTTTCTGGCACAGAGTTTaGCAATTCTGCGTCTTTCCT +
Preference number: 4 (lower is better)
Translates to: HFLAQNTVKITVLTSWSLFWHRV*QFCVFP
Trigger: AGGAAAGACGCAGAATTGGCAAACTCTGTGCCAGAA...AAGTGACCAAGAGGTCAAGACTGTAATTTTCACAGTGTTCTGAGCCAAGAAGTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000034609.11
ENSMUST00000071219.12
CDS-3UTR CCA 90 bp TCACTTCTTGGCTCAGAACACTGTGAAAATTACAGTCTTGACCTCTTGGTCACTCTTCATCTGGAGATGTaGCCAGTGACATATCCACAA +
Preference number: 4 (lower is better)
Translates to: SLLGSEHCENYSLDLLVTLHLEM*PVTYPQ
Trigger: TTGTGGATATGTCACTGGCCACATCTCCAGATGAAG...AGTGACCAAGAGGTCAAGACTGTAATTTTCACAGTGTTCTGAGCCAAGAAGTGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034609.11
ENSMUST00000071219.12
ENSMUST00000139389.8
CDS-3UTR CCA 90 bp TTGGCTCAGAACACTGTGAAAATTACAGTCTTGACCTCTTGGTCACTTCTTGGCGTTACGAAGAGAGGTTaGGATTCCATATTGGTAGGT +
Preference number: 4 (lower is better)
Translates to: LAQNTVKITVLTSWSLLGVTKRG*DSILVG
Trigger: ACCTACCAATATGGAATCCCAACCTCTCTTCGTAAC...GCCAAGAAGTGACCAAGAGGTCAAGACTGTAATTTTCACAGTGTTCTGAGCCAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034609.11
ENSMUST00000071219.12
CDS-3UTR TCA 90 bp CACTTCTTGGCTCAGAACACTGTGAAAATTACAGTCTTGACCTCTTGGTCACTTCTTCTCAAACATCGCTaGCTTTTGGGAGTAGACTTT +
Preference number: 4 (lower is better)
Translates to: HFLAQNTVKITVLTSWSLLLKHR*LLGVDF
Trigger: AAAGTCTACTCCCAAAAGTCAGCGATGTTTGAGAAG...AAGTGACCAAGAGGTCAAGACTGTAATTTTCACAGTGTTCTGAGCCAAGAAGTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000034609.11
ENSMUST00000071219.12
CDS CCA 90 bp TTGGTGCAGGAGCTCTCCATGGCAGTAGATCTGGCTCTCACAGGGTaGTGGCAGGGCCTCCTGGGACCTAAGTCCCAGCCCCAGCAGAAG +
Preference number: 5 (lower is better)
Translates to: LVQELSMAVDLALTG*WQGLLGPKSQPQQK
Trigger: CTTCTGCTGGGGCTGGGACTTAGGTCCCAGGAGGCCCTGCCACCACCCTGTGAGAGCCAGATCTACTGCCATGGAGAGCTCCTGCACCAA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034609.11
ENSMUST00000139389.8
CDS CCA 90 bp CTTGGTGCAGGAGCTCTCCATGGCAGTAGATCTCTCACAGGGTGGTaGCAGGGCCTCCTGGGACCTAAGTCCCAGCCCCAGCAGAAGCAG +
Preference number: 5 (lower is better)
Translates to: LGAGALHGSRSLTGW*QGLLGPKSQPQQKQ
Trigger: CTGCTTCTGCTGGGGCTGGGACTTAGGTCCCAGGAGGCCCTGCCACCACCCTGTGAGAGATCTACTGCCATGGAGAGCTCCTGCACCAAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071219.12
CDS CCA 90 bp GAACTTGGTGCAGGAGCTCTCCATGGCAGTAGATCTCTCACAGGGTaGTGGCAGGGCCTCCTGGGACCTAAGTCCCAGCCCCAGCAGAAG +
Preference number: 5 (lower is better)
Translates to: ELGAGALHGSRSLTG*WQGLLGPKSQPQQK
Trigger: CTTCTGCTGGGGCTGGGACTTAGGTCCCAGGAGGCCCTGCCACCACCCTGTGAGAGATCTACTGCCATGGAGAGCTCCTGCACCAAGTTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071219.12
CDS-3UTR CAA 90 bp AACCATGAGCTGGGGCCAGGGGAGAAAGCGCAGGCAGTGAGTCCATTCTTGTTCGACTCAGCCCCAGCCTaGAGCTCAGCCCACAGAGTC +
Preference number: 5 (lower is better)
Translates to: NHELGPGEKAQAVSPFLFDSAPA*SSAHRV
Trigger: GACTCTGTGGGCTGAGCTCAAGGCTGGGGCTGAGTC...GAACAAGAATGGACTCACTGCCTGCGCTTTCTCCCCTGGCCCCAGCTCATGGTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000034609.11
ENSMUST00000071219.12
CDS-3UTR CAA 90 bp AACCATGAGCTGGGGCCAGGGGAGAAAGCGCAGGCAGTGAGTCCATTCTTGTTCCTGGGCCATCTGAACTaGGTGCAGGAGCTCTCCATG +
Preference number: 5 (lower is better)
Translates to: NHELGPGEKAQAVSPFLFLGHLN*VQELSM
Trigger: CATGGAGAGCTCCTGCACCAAGTTCAGATGGCCCAG...GAACAAGAATGGACTCACTGCCTGCGCTTTCTCCCCTGGCCCCAGCTCATGGTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000034609.11
ENSMUST00000071219.12
ENSMUST00000139389.8
CDS-3UTR CAA 90 bp CTGGTCACCATAGCGATCCAGAAGCATCAGGGCCAATCCGTTTGTCCAGCCAAAGACTCAGCCCCAGCCTaGAGCTCAGCCCACAGAGTC +
Preference number: 5 (lower is better)
Translates to: LVTIAIQKHQGQSVCPAKDSAPA*SSAHRV
Trigger: GACTCTGTGGGCTGAGCTCAAGGCTGGGGCTGAGTC...TTTGGCTGGACAAACGGATTGGCCCTGATGCTTCTGGATCGCTATGGTGACCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000150822.2
CDS-3UTR CAA 90 bp GGAAGTCCCACTGCTGGCCTGTGTTACGAAGAGAGGTTGGGATTCCATATTGGTCTGGGCCATCTGAACTaGGTGCAGGAGCTCTCCATG +
Preference number: 5 (lower is better)
Translates to: GSPTAGLCYEERLGFHIGLGHLN*VQELSM
Trigger: CATGGAGAGCTCCTGCACCAAGTTCAGATGGCCCAG...ACCAATATGGAATCCCAACCTCTCTTCGTAACACAGGCCAGCAGTGGGACTTCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000139389.8
CDS-3UTR CAA 90 bp AACCATGAGCTGGGGCCAGGGGAGAAAGCGCAGGCAGTGAGTCCATTCTTGTTCAAACTGCTTGTCATCTaGGTAGAGCTGGGCCATCTG +
Preference number: 5 (lower is better)
Translates to: NHELGPGEKAQAVSPFLFKLLVI*VELGHL
Trigger: CAGATGGCCCAGCTCTACCAAGATGACAAGCAGTTT...GAACAAGAATGGACTCACTGCCTGCGCTTTCTCCCCTGGCCCCAGCTCATGGTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000034609.11
ENSMUST00000071219.12
ENSMUST00000139389.8
CDS-3UTR CAA 90 bp CCACTGCTGGCCTGTGTTACGAAGAGAGGTTGGGATTCCATATTGGTAGGTCAATTGGGGATGCTGTGGTaGTGGACTGTGGCCAGCTCA +
Preference number: 5 (lower is better)
Translates to: PLLACVTKRGWDSILVGQLGMLW*WTVASS
Trigger: TGAGCTGGCCACAGTCCACAACCACAGCATCCCCAA...TTGACCTACCAATATGGAATCCCAACCTCTCTTCGTAACACAGGCCAGCAGTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000139389.8
CDS-3UTR CAA 90 bp TCAGGGCCAATCCGTTTGTCCAGCCAAATCCTTCCTGAACTTCATACTCCCCTCTCAGCGGGTACCATTTaGCTGGTTCGGATGCTGCTG +
Preference number: 5 (lower is better)
Translates to: SGPIRLSSQILPELHTPLSAGTI*LVRMLL
Trigger: CAGCAGCATCCGAACCAGCAAAATGGTACCCGCTGA...GAGGGGAGTATGAAGTTCAGGAAGGATTTGGCTGGACAAACGGATTGGCCCTGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000150822.2
CDS-3UTR CAA 90 bp GCATCAGGGCCAATCCGTTTGTCCAGCCAAATCCTTCCTGAACTTCATACTCCCCATCAGTTCCTCTGCTaGGCACAGGAACGCGTTCAG +
Preference number: 5 (lower is better)
Translates to: ASGPIRLSSQILPELHTPHQFLC*AQERVQ
Trigger: CTGAACGCGTTCCTGTGCCAAGCAGAGGAACTGATG...GGGAGTATGAAGTTCAGGAAGGATTTGGCTGGACAAACGGATTGGCCCTGATGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000150822.2
CDS-3UTR CAA 90 bp TTGGCTCAGAACACTGTGAAAATTACAGTCTTGACCTCTTGGTCACTTCTTGGCGACTCAGCCCCAGCCTaGAGCTCAGCCCACAGAGTC +
Preference number: 5 (lower is better)
Translates to: LAQNTVKITVLTSWSLLGDSAPA*SSAHRV
Trigger: GACTCTGTGGGCTGAGCTCAAGGCTGGGGCTGAGTC...GCCAAGAAGTGACCAAGAGGTCAAGACTGTAATTTTCACAGTGTTCTGAGCCAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000034609.11
ENSMUST00000071219.12
CDS-3UTR CAA 90 bp TTGGCTCAGAACACTGTGAAAATTACAGTCTTGACCTCTTGGTCACTTCTTGGCCTGGGCCATCTGAACTaGGTGCAGGAGCTCTCCATG +
Preference number: 5 (lower is better)
Translates to: LAQNTVKITVLTSWSLLGLGHLN*VQELSM
Trigger: CATGGAGAGCTCCTGCACCAAGTTCAGATGGCCCAG...GCCAAGAAGTGACCAAGAGGTCAAGACTGTAATTTTCACAGTGTTCTGAGCCAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034609.11
ENSMUST00000071219.12
ENSMUST00000139389.8
CDS-3UTR CAA 90 bp CACTTCTTGGCTCAGAACACTGTGAAAATTACAGTCTTGACCTCTTGGTCACTTTTGGGGATGCTGTGGTaGTGGACTGTGGCCAGCTCA +
Preference number: 5 (lower is better)
Translates to: HFLAQNTVKITVLTSWSLLGMLW*WTVASS
Trigger: TGAGCTGGCCACAGTCCACAACCACAGCATCCCCAA...AAGTGACCAAGAGGTCAAGACTGTAATTTTCACAGTGTTCTGAGCCAAGAAGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000034609.11
ENSMUST00000071219.12
ENSMUST00000139389.8
CDS-3UTR CAA 90 bp TCACTTCTTGGCTCAGAACACTGTGAAAATTACAGTCTTGACCTCTTGGTCACTTTGGGGATGCTGTGGTaGTGGACTGTGGCCAGCTCA +
Preference number: 5 (lower is better)
Translates to: SLLGSEHCENYSLDLLVTLGMLW*WTVASS
Trigger: TGAGCTGGCCACAGTCCACAACCACAGCATCCCCAA...AGTGACCAAGAGGTCAAGACTGTAATTTTCACAGTGTTCTGAGCCAAGAAGTGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000034609.11
ENSMUST00000071219.12
ENSMUST00000139389.8
CDS-3UTR CAA 90 bp TCACTTCTTGGCTCAGAACACTGTGAAAATTACAGTCTTGACCTCTTGGTCACTTGGGGGCTGGCTCCGTaGCAGGTAATATATGCGTCC +
Preference number: 5 (lower is better)
Translates to: SLLGSEHCENYSLDLLVTWGLAP*QVIYAS
Trigger: GGACGCATATATTACCTGCAACGGAGCCAGCCCCCA...AGTGACCAAGAGGTCAAGACTGTAATTTTCACAGTGTTCTGAGCCAAGAAGTGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000034609.11
ENSMUST00000071219.12
CDS-3UTR CAA 90 bp TTGGCTCAGAACACTGTGAAAATTACAGTCTTGACCTCTTGGTCACTTCTTGGCTCAGCGGGTACCATTTaGCTGGTTCGGATGCTGCTG +
Preference number: 5 (lower is better)
Translates to: LAQNTVKITVLTSWSLLGSAGTI*LVRMLL
Trigger: CAGCAGCATCCGAACCAGCAAAATGGTACCCGCTGA...GCCAAGAAGTGACCAAGAGGTCAAGACTGTAATTTTCACAGTGTTCTGAGCCAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034609.11
ENSMUST00000071219.12
CDS-3UTR CAA 90 bp TCACTTCTTGGCTCAGAACACTGTGAAAATTACAGTCTTGACCTCTTGGTCACTTCAGCGGGTACCATTTaGCTGGTTCGGATGCTGCTG +
Preference number: 5 (lower is better)
Translates to: SLLGSEHCENYSLDLLVTSAGTI*LVRMLL
Trigger: CAGCAGCATCCGAACCAGCAAAATGGTACCCGCTGA...AGTGACCAAGAGGTCAAGACTGTAATTTTCACAGTGTTCTGAGCCAAGAAGTGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034609.11
ENSMUST00000071219.12
CDS-3UTR CAA 90 bp CACTTCTTGGCTCAGAACACTGTGAAAATTACAGTCTTGACCTCTTGGTCACTTCATCAGTTCCTCTGCTaGGCACAGGAACGCGTTCAG +
Preference number: 5 (lower is better)
Translates to: HFLAQNTVKITVLTSWSLHQFLC*AQERVQ
Trigger: CTGAACGCGTTCCTGTGCCAAGCAGAGGAACTGATG...AAGTGACCAAGAGGTCAAGACTGTAATTTTCACAGTGTTCTGAGCCAAGAAGTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034609.11
ENSMUST00000071219.12
CDS-3UTR CAA 90 bp TTGGCTCAGAACACTGTGAAAATTACAGTCTTGACCTCTTGGTCACTTCTTGGCTCAGGGCCAATCCGTTaGTCCAGCCAAATCCTTCCT +
Preference number: 5 (lower is better)
Translates to: LAQNTVKITVLTSWSLLGSGPIR*SSQILP
Trigger: AGGAAGGATTTGGCTGGACAAACGGATTGGCCCTGA...GCCAAGAAGTGACCAAGAGGTCAAGACTGTAATTTTCACAGTGTTCTGAGCCAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034609.11
ENSMUST00000071219.12
CDS-3UTR CAA 90 bp TTGGCTCAGAACACTGTGAAAATTACAGTCTTGACCTCTTGGTCACTTCTTGGCAAACTGCTTGTCATCTaGGTAGAGCTGGGCCATCTG +
Preference number: 5 (lower is better)
Translates to: LAQNTVKITVLTSWSLLGKLLVI*VELGHL
Trigger: CAGATGGCCCAGCTCTACCAAGATGACAAGCAGTTT...GCCAAGAAGTGACCAAGAGGTCAAGACTGTAATTTTCACAGTGTTCTGAGCCAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034609.11
ENSMUST00000071219.12
ENSMUST00000139389.8
CDS-3UTR CAA 90 bp TCACTTCTTGGCTCAGAACACTGTGAAAATTACAGTCTTGACCTCTTGGTCACTTCAGGGCCAATCCGTTaGTCCAGCCAAATCCTTCCT +
Preference number: 5 (lower is better)
Translates to: SLLGSEHCENYSLDLLVTSGPIR*SSQILP
Trigger: AGGAAGGATTTGGCTGGACAAACGGATTGGCCCTGA...AGTGACCAAGAGGTCAAGACTGTAATTTTCACAGTGTTCTGAGCCAAGAAGTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034609.11
ENSMUST00000071219.12
CDS-3UTR CAA 90 bp TCACTTCTTGGCTCAGAACACTGTGAAAATTACAGTCTTGACCTCTTGGTCACTCCTGGATGTCCACCGTaGCTGATGTCATACTTCTCA +
Preference number: 5 (lower is better)
Translates to: SLLGSEHCENYSLDLLVTPGCPP*LMSYFS
Trigger: TGAGAAGTATGACATCAGCAACGGTGGACATCCAGG...AGTGACCAAGAGGTCAAGACTGTAATTTTCACAGTGTTCTGAGCCAAGAAGTGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034609.11
ENSMUST00000071219.12
CDS-3UTR CAA 90 bp TTGGCTCAGAACACTGTGAAAATTACAGTCTTGACCTCTTGGTCACTTCTTGGCCAGATCCAGAAAGTTTaGCAGCATACCCTTCACTGT +
Preference number: 5 (lower is better)
Translates to: LAQNTVKITVLTSWSLLGQIQKV*QHTLHC
Trigger: ACAGTGAAGGGTATGCTGCAAAACTTTCTGGATCTG...GCCAAGAAGTGACCAAGAGGTCAAGACTGTAATTTTCACAGTGTTCTGAGCCAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034609.11
ENSMUST00000071219.12
CDS-3UTR CAA 90 bp TCACTTCTTGGCTCAGAACACTGTGAAAATTACAGTCTTGACCTCTTGGTCACTCAGATCCAGAAAGTTTaGCAGCATACCCTTCACTGT +
Preference number: 5 (lower is better)
Translates to: SLLGSEHCENYSLDLLVTQIQKV*QHTLHC
Trigger: ACAGTGAAGGGTATGCTGCAAAACTTTCTGGATCTG...AGTGACCAAGAGGTCAAGACTGTAATTTTCACAGTGTTCTGAGCCAAGAAGTGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034609.11
ENSMUST00000071219.12
CDS CCA 72 bp GAGCTCTCCATGGCAGTAGATCTGGCTCTCACAGGGTaGTGGCAGGGCCTCCTGGGACCTAAGTCCCAGCCC +
Preference number: 6 (lower is better)
Translates to: ELSMAVDLALTG*WQGLLGPKSQP
Trigger: GGGCTGGGACTTAGGTCCCAGGAGGCCCTGCCACCACCCTGTGAGAGCCAGATCTACTGCCATGGAGAGCTC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034609.11
ENSMUST00000139389.8
CDS CCA 72 bp GGAGCTCTCCATGGCAGTAGATCTCTCACAGGGTGGTaGCAGGGCCTCCTGGGACCTAAGTCCCAGCCCCAG +
Preference number: 6 (lower is better)
Translates to: GALHGSRSLTGW*QGLLGPKSQPQ
Trigger: CTGGGGCTGGGACTTAGGTCCCAGGAGGCCCTGCCACCACCCTGTGAGAGATCTACTGCCATGGAGAGCTCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071219.12
CDS CCA 72 bp GCAGGAGCTCTCCATGGCAGTAGATCTCTCACAGGGTaGTGGCAGGGCCTCCTGGGACCTAAGTCCCAGCCC +
Preference number: 6 (lower is better)
Translates to: AGALHGSRSLTG*WQGLLGPKSQP
Trigger: GGGCTGGGACTTAGGTCCCAGGAGGCCCTGCCACCACCCTGTGAGAGATCTACTGCCATGGAGAGCTCCTGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071219.12
CDS TCA 72 bp TGGGGATGCTGTGGTTGTGGACTGTGGCCAGCTCACTaGACTTCTGCAGGACTTCATCTGGAGATGTGGCCA +
Preference number: 6 (lower is better)
Translates to: WGCCGCGLWPAH*TSAGLHLEMWP
Trigger: TGGCCACATCTCCAGATGAAGTCCTGCAGAAGTTCAGTGAGCTGGCCACAGTCCACAACCACAGCATCCCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034609.11
ENSMUST00000071219.12
ENSMUST00000139389.8
CDS CAA 72 bp CTGCTTGTCATCTTGGTAGAGCTGGGCCATCTGAACTaGGTGCAGGAGCTCTCCATGGCAGTAGATCTGGCT +
Preference number: 6 (lower is better)
Translates to: LLVILVELGHLN*VQELSMAVDLA
Trigger: AGCCAGATCTACTGCCATGGAGAGCTCCTGCACCAAGTTCAGATGGCCCAGCTCTACCAAGATGACAAGCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034609.11
ENSMUST00000139389.8
CDS CAA 90 bp ATCCACAAACTGCTTGTCATCTTGGTAGAGCTGGGCCATCTGAACTaGGTGCAGGAGCTCTCCATGGCAGTAGATCTGGCTCTCACAGGG +
Preference number: 6 (lower is better)
Translates to: IHKLLVILVELGHLN*VQELSMAVDLALTG
Trigger: CCCTGTGAGAGCCAGATCTACTGCCATGGAGAGCTCCTGCACCAAGTTCAGATGGCCCAGCTCTACCAAGATGACAAGCAGTTTGTGGAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034609.11
ENSMUST00000139389.8
CDS CAA 72 bp CTGCTTGTCATCTTGGTAGAGCTGGGCCATCTGAACTaGGTGCAGGAGCTCTCCATGGCAGTAGATCTCTCA +
Preference number: 6 (lower is better)
Translates to: LLVILVELGHLN*VQELSMAVDLS
Trigger: TGAGAGATCTACTGCCATGGAGAGCTCCTGCACCAAGTTCAGATGGCCCAGCTCTACCAAGATGACAAGCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071219.12
CDS CAA 90 bp ATCCACAAACTGCTTGTCATCTTGGTAGAGCTGGGCCATCTGAACTaGGTGCAGGAGCTCTCCATGGCAGTAGATCTCTCACAGGGTGGT +
Preference number: 6 (lower is better)
Translates to: IHKLLVILVELGHLN*VQELSMAVDLSQGG
Trigger: ACCACCCTGTGAGAGATCTACTGCCATGGAGAGCTCCTGCACCAAGTTCAGATGGCCCAGCTCTACCAAGATGACAAGCAGTTTGTGGAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071219.12
CDS TCA 72 bp GCTTTGAGTAGATTAGGGAGGACCTCTCGGGGTAGCTaGGGACTTCTGCTTTCATCTTCTTTCCCAGCTTTT +
Preference number: 6 (lower is better)
Translates to: ALSRLGRTSRGS*GLLLSSSFPAF
Trigger: AAAAGCTGGGAAAGAAGATGAAAGCAGAAGTCCTCAGCTACCCCGAGAGGTCCTCCCTAATCTACTCAAAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034609.11
CDS TCA 72 bp CAGATCCAGAAAGTTTTGCAGCATACCCTTCACTGTTaGGGCCATCTCAGAAAGAAGCAGGCCTTCCATCAC +
Preference number: 6 (lower is better)
Translates to: QIQKVLQHTLHC*GHLRKKQAFHH
Trigger: GTGATGGAAGGCCTGCTTCTTTCTGAGATGGCCTCAACAGTGAAGGGTATGCTGCAAAACTTTCTGGATCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034609.11
ENSMUST00000071219.12
CDS TCA 72 bp GAACTTCTGCAGGACTTCATCTGGAGATGTGGCCAGTaGCATATCCACAAACTGCTTGTCATCTTGGTAGAG +
Preference number: 6 (lower is better)
Translates to: ELLQDFIWRCGQ*HIHKLLVILVE
Trigger: CTCTACCAAGATGACAAGCAGTTTGTGGATATGTCACTGGCCACATCTCCAGATGAAGTCCTGCAGAAGTTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000034609.11
ENSMUST00000071219.12
ENSMUST00000139389.8