Pregenerated sensors for TRDV5 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000076873Ensembl transcript IDs: ENSMUST00000103685.3
Found 18 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | AGAATCCGCATTGTACGTGCAGAGCAGTGTTACTTCAGTGCCGCTTaGCACTGTCTGGTCAGTGGAGCTCTGGGTCAGCGTGATGCACAG | + |
|
Preference number: 5 (lower is better) Translates to: RIRIVRAEQCYFSAA*HCLVSGALGQRDAQ Trigger: CTGTGCATCACGCTGACCCAGAGCTCCACTGACCAGACAGTGGCAAGCGGCACTGAAGTAACACTGCTCTGCACGTACAATGCGGATTCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103685.3 |
||
| CDS CCA 90 bp | ATACCCCGAGGCACAGTAATAAGTAGCGCTGTCTTCAAGGCTCACTaGAGAGATCACCAGATGGAAGGTTCTGTTGGCCTTGCTGTGCTT | + |
|
Preference number: 5 (lower is better) Translates to: IPRGTVISSAVFKAH*RDHQMEGSVGLAVL Trigger: AAGCACAGCAAGGCCAACAGAACCTTCCATCTGGTGATCTCTCCAGTGAGCCTTGAAGACAGCGCTACTTATTACTGTGCCTCGGGGTAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103685.3 |
||
| CDS GCA 90 bp | TGCGATACCAAAATAAATCTGGGTTTGGAGAATCCGCATTGTACGTaGAGAGCAGTGTTACTTCAGTGCCGCTTGCCACTGTCTGGTCAG | + |
|
Preference number: 5 (lower is better) Translates to: CDTKINLGLENPHCT*RAVLLQCRLPLSGQ Trigger: CTGACCAGACAGTGGCAAGCGGCACTGAAGTAACACTGCTCTGCACGTACAATGCGGATTCTCCAAACCCAGATTTATTTTGGTATCGCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103685.3 |
||
| CDS GCA 90 bp | CAAGGCTCACTGGAGAGATCACCAGATGGAAGGTTCTGTTGGCCTTaGTGTGCTTCACAGAAAATCGACCTTGAACAAAATCTGCATCAT | + |
|
Preference number: 5 (lower is better) Translates to: QGSLERSPDGRFCWP*CASQKIDLEQNLHH Trigger: ATGATGCAGATTTTGTTCAAGGTCGATTTTCTGTGAAGCACAGCAAGGCCAACAGAACCTTCCATCTGGTGATCTCTCCAGTGAGCCTTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000103685.3 |
||
| CDS CCA 90 bp | TGTCTTCAAGGCTCACTGGAGAGATCACCAGATGGAAGGTTCTGTTaGCCTTGCTGTGCTTCACAGAAAATCGACCTTGAACAAAATCTG | + |
|
Preference number: 5 (lower is better) Translates to: CLQGSLERSPDGRFC*PCCASQKIDLEQNL Trigger: CAGATTTTGTTCAAGGTCGATTTTCTGTGAAGCACAGCAAGGCCAACAGAACCTTCCATCTGGTGATCTCTCCAGTGAGCCTTGAAGACA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000103685.3 |
||
| CDS GCA 90 bp | GTTGGCCTTGCTGTGCTTCACAGAAAATCGACCTTGAACAAAATCTaGATCATGGGAACTAGTGTCGTCCCTATAAAGGATGAACTGGAA | + |
|
Preference number: 5 (lower is better) Translates to: VGLAVLHRKSTLNKI*IMGTSVVPIKDELE Trigger: TTCCAGTTCATCCTTTATAGGGACGACACTAGTTCCCATGATGCAGATTTTGTTCAAGGTCGATTTTCTGTGAAGCACAGCAAGGCCAAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000103685.3 |
||
| CDS CCA 72 bp | CAGAGCAGTGTTACTTCAGTGCCGCTTGCCACTGTCTaGTCAGTGGAGCTCTGGGTCAGCGTGATGCACAGC | + |
|
Preference number: 6 (lower is better) Translates to: QSSVTSVPLATV*SVELWVSVMHS Trigger: GCTGTGCATCACGCTGACCCAGAGCTCCACTGACCAGACAGTGGCAAGCGGCACTGAAGTAACACTGCTCTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103685.3 |
||
| CDS CAA 72 bp | CATTGTACGTGCAGAGCAGTGTTACTTCAGTGCCGCTaGCCACTGTCTGGTCAGTGGAGCTCTGGGTCAGCG | + |
|
Preference number: 6 (lower is better) Translates to: HCTCRAVLLQCR*PLSGQWSSGSA Trigger: CGCTGACCCAGAGCTCCACTGACCAGACAGTGGCAAGCGGCACTGAAGTAACACTGCTCTGCACGTACAATG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103685.3 |
||
| CDS GCA 72 bp | AATCCGCATTGTACGTGCAGAGCAGTGTTACTTCAGTaGCGCTTGCCACTGTCTGGTCAGTGGAGCTCTGGG | + |
|
Preference number: 6 (lower is better) Translates to: NPHCTCRAVLLQ*RLPLSGQWSSG Trigger: CCCAGAGCTCCACTGACCAGACAGTGGCAAGCGGCACTGAAGTAACACTGCTCTGCACGTACAATGCGGATT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103685.3 |
||
| CDS CAA 90 bp | GGCCTTTTGCGATACCAAAATAAATCTGGGTTTGGAGAATCCGCATaGTACGTGCAGAGCAGTGTTACTTCAGTGCCGCTTGCCACTGTC | + |
|
Preference number: 6 (lower is better) Translates to: GLLRYQNKSGFGESA*YVQSSVTSVPLATV Trigger: GACAGTGGCAAGCGGCACTGAAGTAACACTGCTCTGCACGTACAATGCGGATTCTCCAAACCCAGATTTATTTTGGTATCGCAAAAGGCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000103685.3 |
||
| CDS CAA 90 bp | GGAAGGATCTGTCTGGCCTTTTGCGATACCAAAATAAATCTGGGTTaGGAGAATCCGCATTGTACGTGCAGAGCAGTGTTACTTCAGTGC | + |
|
Preference number: 6 (lower is better) Translates to: GRICLAFCDTKINLG*ENPHCTCRAVLLQC Trigger: GCACTGAAGTAACACTGCTCTGCACGTACAATGCGGATTCTCCAAACCCAGATTTATTTTGGTATCGCAAAAGGCCAGACAGATCCTTCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000103685.3 |
||
| CDS GCA 72 bp | AAAATAAATCTGGGTTTGGAGAATCCGCATTGTACGTaGAGAGCAGTGTTACTTCAGTGCCGCTTGCCACTG | + |
|
Preference number: 6 (lower is better) Translates to: KINLGLENPHCT*RAVLLQCRLPL Trigger: CAGTGGCAAGCGGCACTGAAGTAACACTGCTCTGCACGTACAATGCGGATTCTCCAAACCCAGATTTATTTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103685.3 |
||
| CDS GCA 72 bp | CTGGAGAGATCACCAGATGGAAGGTTCTGTTGGCCTTaGTGTGCTTCACAGAAAATCGACCTTGAACAAAAT | + |
|
Preference number: 6 (lower is better) Translates to: LERSPDGRFCWP*CASQKIDLEQN Trigger: ATTTTGTTCAAGGTCGATTTTCTGTGAAGCACAGCAAGGCCAACAGAACCTTCCATCTGGTGATCTCTCCAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000103685.3 |
||
| CDS CAA 72 bp | CGATACCAAAATAAATCTGGGTTTGGAGAATCCGCATaGTACGTGCAGAGCAGTGTTACTTCAGTGCCGCTT | + |
|
Preference number: 6 (lower is better) Translates to: RYQNKSGFGESA*YVQSSVTSVPL Trigger: AAGCGGCACTGAAGTAACACTGCTCTGCACGTACAATGCGGATTCTCCAAACCCAGATTTATTTTGGTATCG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103685.3 |
||
| CDS CAA 72 bp | TCTGTTGGCCTTGCTGTGCTTCACAGAAAATCGACCTaGAACAAAATCTGCATCATGGGAACTAGTGTCGTC | + |
|
Preference number: 6 (lower is better) Translates to: SVGLAVLHRKST*NKICIMGTSVV Trigger: GACGACACTAGTTCCCATGATGCAGATTTTGTTCAAGGTCGATTTTCTGTGAAGCACAGCAAGGCCAACAGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000103685.3 |
||
| CDS CAA 90 bp | ATGGAAGGTTCTGTTGGCCTTGCTGTGCTTCACAGAAAATCGACCTaGAACAAAATCTGCATCATGGGAACTAGTGTCGTCCCTATAAAG | + |
|
Preference number: 6 (lower is better) Translates to: MEGSVGLAVLHRKST*NKICIMGTSVVPIK Trigger: CTTTATAGGGACGACACTAGTTCCCATGATGCAGATTTTGTTCAAGGTCGATTTTCTGTGAAGCACAGCAAGGCCAACAGAACCTTCCAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000103685.3 |
||
| CDS CAA 72 bp | TGTCTGGCCTTTTGCGATACCAAAATAAATCTGGGTTaGGAGAATCCGCATTGTACGTGCAGAGCAGTGTTA | + |
|
Preference number: 6 (lower is better) Translates to: CLAFCDTKINLG*ENPHCTCRAVL Trigger: TAACACTGCTCTGCACGTACAATGCGGATTCTCCAAACCCAGATTTATTTTGGTATCGCAAAAGGCCAGACA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000103685.3 |
||
| CDS GCA 72 bp | GCTGTGCTTCACAGAAAATCGACCTTGAACAAAATCTaGATCATGGGAACTAGTGTCGTCCCTATAAAGGAT | + |
|
Preference number: 6 (lower is better) Translates to: AVLHRKSTLNKI*IMGTSVVPIKD Trigger: ATCCTTTATAGGGACGACACTAGTTCCCATGATGCAGATTTTGTTCAAGGTCGATTTTCTGTGAAGCACAGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000103685.3 |
||