Pregenerated sensors for TRDV2-2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000076866

Ensembl transcript IDs: ENSMUST00000103678.4

Found 5 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS GCA 90 bp	CCTGCACAGACTTTTTCTTCTGAGGCTGAGACACTGTCTGAGCCATaGTGGCTTCAAGAGAAGTGGAAAGGAAGAGCACCCACAGGAAGA	+
Preference number: 5 (lower is better) Translates to: PAQTFSSEAETLSEP*WLQEKWKGRAPTGR Trigger: TCTTCCTGTGGGTGCTCTTCCTTTCCACTTCTCTTGAAGCCAGCATGGCTCAGACAGTGTCTCAGCCTCAGAAGAAAAAGTCTGTGCAGG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000103678.4
CDS CCA 90 bp	GCACAGACTTTTTCTTCTGAGGCTGAGACACTGTCTGAGCCATGCTaGCTTCAAGAGAAGTGGAAAGGAAGAGCACCCACAGGAAGAACG	+
Preference number: 5 (lower is better) Translates to: AQTFSSEAETLSEPC*LQEKWKGRAPTGRT Trigger: CGTTCTTCCTGTGGGTGCTCTTCCTTTCCACTTCTCTTGAAGCCAGCATGGCTCAGACAGTGTCTCAGCCTCAGAAGAAAAAGTCTGTGC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000103678.4
CDS CCA 72 bp	GAGACACTGTCTGAGCCATGCTGGCTTCAAGAGAAGTaGAAAGGAAGAGCACCCACAGGAAGAACGGCCGTA	+
Preference number: 6 (lower is better) Translates to: ETLSEPCWLQEK*KGRAPTGRTAV Trigger: TACGGCCGTTCTTCCTGTGGGTGCTCTTCCTTTCCACTTCTCTTGAAGCCAGCATGGCTCAGACAGTGTCTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103678.4
CDS GCA 72 bp	ACTTTTTCTTCTGAGGCTGAGACACTGTCTGAGCCATaGTGGCTTCAAGAGAAGTGGAAAGGAAGAGCACCC	+
Preference number: 6 (lower is better) Translates to: TFSSEAETLSEP*WLQEKWKGRAP Trigger: GGGTGCTCTTCCTTTCCACTTCTCTTGAAGCCAGCATGGCTCAGACAGTGTCTCAGCCTCAGAAGAAAAAGT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000103678.4
CDS CCA 72 bp	TTTTCTTCTGAGGCTGAGACACTGTCTGAGCCATGCTaGCTTCAAGAGAAGTGGAAAGGAAGAGCACCCACA	+
Preference number: 6 (lower is better) Translates to: FSSEAETLSEPC*LQEKWKGRAPT Trigger: TGTGGGTGCTCTTCCTTTCCACTTCTCTTGAAGCCAGCATGGCTCAGACAGTGTCTCAGCCTCAGAAGAAAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103678.4

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