Pregenerated sensors for TRDV1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000076864

Ensembl transcript IDs: ENSMUST00000103676.9, ENSMUST00000187163.2

Found 9 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS TCA 90 bp	CTTGGATTGTCAGAGACTGAGGACTCTGATGCAACATTTGGGTGTTaGCCCAGGCAGCCTGAAATGTCAATAGCCAAGCAAGCACTTGAA	+
Preference number: 5 (lower is better) Translates to: LGLSETEDSDATFGC*PRQPEMSIAKQALE Trigger: TTCAAGTGCTTGCTTGGCTATTGACATTTCAGGCTGCCTGGGTCAACACCCAAATGTTGCATCAGAGTCCTCAGTCTCTGACAATCCAAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103676.9
CDS TCA 90 bp	CTTGGATTGTCAGAGACTGAGGACTCTGATGCAACATTTGGGTGTTaGAGGCAGCCTGAAATGTCAATAGCCAAGCAAGCACTTGAAGGC	+
Preference number: 5 (lower is better) Translates to: LGLSETEDSDATFGC*RQPEMSIAKQALEG Trigger: GCCTTCAAGTGCTTGCTTGGCTATTGACATTTCAGGCTGCCTTCAACACCCAAATGTTGCATCAGAGTCCTCAGTCTCTGACAATCCAAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000187163.2
CDS GCA 90 bp	TTTTCTCATCTCCTCCTTTCTGTAATGTCACCAAGGAGACGAGGCTaGCATCATCCCCCTGCCTATACCAGAGTAAGGCATATAAAGATG	+
Preference number: 5 (lower is better) Translates to: FSHLLLSVMSPRRRG*HHPPAYTRVRHIKM Trigger: CATCTTTATATGCCTTACTCTGGTATAGGCAGGGGGATGATGGCAGCCTCGTCTCCTTGGTGACATTACAGAAAGGAGGAGATGAGAAAA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000103676.9 ENSMUST00000187163.2
CDS TCA 72 bp	TCAGAGACTGAGGACTCTGATGCAACATTTGGGTGTTaGCCCAGGCAGCCTGAAATGTCAATAGCCAAGCAA	+
Preference number: 6 (lower is better) Translates to: SETEDSDATFGC*PRQPEMSIAKQ Trigger: TTGCTTGGCTATTGACATTTCAGGCTGCCTGGGTCAACACCCAAATGTTGCATCAGAGTCCTCAGTCTCTGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103676.9
CDS TCA 72 bp	TCAGAGACTGAGGACTCTGATGCAACATTTGGGTGTTaGAGGCAGCCTGAAATGTCAATAGCCAAGCAAGCA	+
Preference number: 6 (lower is better) Translates to: SETEDSDATFGC*RQPEMSIAKQA Trigger: TGCTTGCTTGGCTATTGACATTTCAGGCTGCCTTCAACACCCAAATGTTGCATCAGAGTCCTCAGTCTCTGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000187163.2
CDS CAA 72 bp	GTGGCTGGGCTGGGAGGCTTGGATCCACAGGGAACTTaGTTGCATTTTCTTATCCAGATTAGCGGTTATTTT	+
Preference number: 6 (lower is better) Translates to: VAGLGGLDPQGT*LHFLIQISGYF Trigger: AAAATAACCGCTAATCTGGATAAGAAAATGCAACAAAGTTCCCTGTGGATCCAAGCCTCCCAGCCCAGCCAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000103676.9 ENSMUST00000187163.2
CDS TCA 72 bp	AGGCATATAAAGATGTTGATAAATTGCAGCTCATGGTaGCTTCATCTCCTTCTTGGATTGTCAGAGACTGAG	+
Preference number: 6 (lower is better) Translates to: RHIKMLINCSSW*LHLLLGLSETE Trigger: CTCAGTCTCTGACAATCCAAGAAGGAGATGAAGTCACCATGAGCTGCAATTTATCAACATCTTTATATGCCT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000103676.9 ENSMUST00000187163.2
CDS CAA 90 bp	CACAGGGAACTTTGTTGCATTTTCTTATCCAGATTAGCGGTTATTTaGTCCTTACTTTTCTCATCTCCTCCTTTCTGTAATGTCACCAAG	+
Preference number: 6 (lower is better) Translates to: HRELCCIFLSRLAVI*SLLFSSPPFCNVTK Trigger: CTTGGTGACATTACAGAAAGGAGGAGATGAGAAAAGTAAGGACAAAATAACCGCTAATCTGGATAAGAAAATGCAACAAAGTTCCCTGTG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000103676.9 ENSMUST00000187163.2
CDS CAA 72 bp	CTTTGTTGCATTTTCTTATCCAGATTAGCGGTTATTTaGTCCTTACTTTTCTCATCTCCTCCTTTCTGTAAT	+
Preference number: 6 (lower is better) Translates to: LCCIFLSRLAVI*SLLFSSPPFCN Trigger: ATTACAGAAAGGAGGAGATGAGAAAAGTAAGGACAAAATAACCGCTAATCTGGATAAGAAAATGCAACAAAG 35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000103676.9 ENSMUST00000187163.2