Pregenerated sensors for TRBV31 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000076499

Ensembl transcript IDs: ENSMUST00000103300.3, ENSMUST00000193003.2

Found 10 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS TCA 90 bp	GAGGGTGCCTCCTGTGGCCTGCCAGTACCAGTAGAGGTTAGGGCTTaGTTTCCCCTTTATGGTACACCCCAGAGACAGTGGGCTGCCCAC	+
Preference number: 5 (lower is better) Translates to: EGASCGLPVPVEVRA*FPLYGTPQRQWAAH Trigger: GTGGGCAGCCCACTGTCTCTGGGGTGTACCATAAAGGGGAAATCAAGCCCTAACCTCTACTGGTACTGGCAGGCCACAGGAGGCACCCTC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000103300.3 ENSMUST00000193003.2
CDS CCA 90 bp	ACACCCCAGAGACAGTGGGCTGCCCACAGCCTTGATCTCGGCAACTaGCCATTGATGGATAGTCTGAGCACTAACCAAGAACATGCCCAG	+
Preference number: 5 (lower is better) Translates to: TPQRQWAAHSLDLGN*PLMDSLSTNQEHAQ Trigger: CTGGGCATGTTCTTGGTTAGTGCTCAGACTATCCATCAATGGCCAGTTGCCGAGATCAAGGCTGTGGGCAGCCCACTGTCTCTGGGGTGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103300.3
CDS CCA 90 bp	AAGCCAGAGTGGCTGAGAAGCAGCTTCTCCGTGCTTAGGATGAATTaGTCGTCCTTCGGCCTGGAAGCTGAGAGGTTCAGTTGCACCACC	+
Preference number: 5 (lower is better) Translates to: KPEWLRSSFSVLRMN*SSFGLEAERFSCTT Trigger: GGTGGTGCAACTGAACCTCTCAGCTTCCAGGCCGAAGGACGACCAATTCATCCTAAGCACGGAGAAGCTGCTTCTCAGCCACTCTGGCTT 56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000103300.3 ENSMUST00000193003.2
CDS CCA 90 bp	ACACCCCAGAGACAGTGGGCTGCCCACAGCCTTGATCTCGGCAACTaGCCATTGATGGATAGTCTGAGCACTAACACCCAAGAACATGCC	+
Preference number: 5 (lower is better) Translates to: TPQRQWAAHSLDLGN*PLMDSLSTNTQEHA Trigger: GGCATGTTCTTGGGTGTTAGTGCTCAGACTATCCATCAATGGCCAGTTGCCGAGATCAAGGCTGTGGGCAGCCCACTGTCTCTGGGGTGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000193003.2
CDS CAA 90 bp	CAGAGACAGTGGGCTGCCCACAGCCTTGATCTCGGCAACTGGCCATaGATGGATAGTCTGAGCACTAACACCCAAGAACATGCCCAGGAG	+
Preference number: 6 (lower is better) Translates to: QRQWAAHSLDLGNWP*MDSLSTNTQEHAQE Trigger: CTCCTGGGCATGTTCTTGGGTGTTAGTGCTCAGACTATCCATCAATGGCCAGTTGCCGAGATCAAGGCTGTGGGCAGCCCACTGTCTCTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000193003.2
CDS TCA 72 bp	TCCTGTGGCCTGCCAGTACCAGTAGAGGTTAGGGCTTaGTTTCCCCTTTATGGTACACCCCAGAGACAGTGG	+
Preference number: 6 (lower is better) Translates to: SCGLPVPVEVRA*FPLYGTPQRQW Trigger: CCACTGTCTCTGGGGTGTACCATAAAGGGGAAATCAAGCCCTAACCTCTACTGGTACTGGCAGGCCACAGGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000103300.3 ENSMUST00000193003.2
CDS CCA 72 bp	TGGCTGAGAAGCAGCTTCTCCGTGCTTAGGATGAATTaGTCGTCCTTCGGCCTGGAAGCTGAGAGGTTCAGT	+
Preference number: 6 (lower is better) Translates to: WLRSSFSVLRMN*SSFGLEAERFS Trigger: ACTGAACCTCTCAGCTTCCAGGCCGAAGGACGACCAATTCATCCTAAGCACGGAGAAGCTGCTTCTCAGCCA 54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000103300.3 ENSMUST00000193003.2
CDS CAA 72 bp	TGGGCTGCCCACAGCCTTGATCTCGGCAACTGGCCATaGATGGATAGTCTGAGCACTAACCAAGAACATGCC	+
Preference number: 6 (lower is better) Translates to: WAAHSLDLGNWP*MDSLSTNQEHA Trigger: GGCATGTTCTTGGTTAGTGCTCAGACTATCCATCAATGGCCAGTTGCCGAGATCAAGGCTGTGGGCAGCCCA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103300.3
CDS CAA 90 bp	CAGAGACAGTGGGCTGCCCACAGCCTTGATCTCGGCAACTGGCCATaGATGGATAGTCTGAGCACTAACCAAGAACATGCCCAGGAGAAA	+
Preference number: 6 (lower is better) Translates to: QRQWAAHSLDLGNWP*MDSLSTNQEHAQEK Trigger: TTTCTCCTGGGCATGTTCTTGGTTAGTGCTCAGACTATCCATCAATGGCCAGTTGCCGAGATCAAGGCTGTGGGCAGCCCACTGTCTCTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103300.3
CDS CAA 72 bp	TGGGCTGCCCACAGCCTTGATCTCGGCAACTGGCCATaGATGGATAGTCTGAGCACTAACACCCAAGAACAT	+
Preference number: 6 (lower is better) Translates to: WAAHSLDLGNWP*MDSLSTNTQEH Trigger: ATGTTCTTGGGTGTTAGTGCTCAGACTATCCATCAATGGCCAGTTGCCGAGATCAAGGCTGTGGGCAGCCCA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000193003.2

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