Pregenerated sensors for TRBV30 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000076481

Ensembl transcript IDs: ENSMUST00000103282.3, ENSMUST00000191646.6

Found 6 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS TCA 90 bp	CACTTTGACAGATGTCCCTGTTTGGCTTTTGGTAGAGGAGGACACTaGATACAGAACCTTGGCTCCAAAGAAGTAGCAGGAATGTCCACA	+
Preference number: 5 (lower is better) Translates to: HFDRCPCLAFGRGGH*IQNLGSKEVAGMST Trigger: TGTGGACATTCCTGCTACTTCTTTGGAGCCAAGGTTCTGTATTCAGTGTCCTCCTCTACCAAAAGCCAAACAGGGACATCTGTCAAAGTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000191646.6
CDS TCA 90 bp	AAACATCGAAACAACTTGACTGTCAGCCACACACTGGATTTTCAGTaGAGTGCCACTTTGACAGATGTCCCTGTTTGGCTTTTGGTAGAG	+
Preference number: 5 (lower is better) Translates to: KHRNNLTVSHTLDFQ*SATLTDVPVWLLVE Trigger: CTCTACCAAAAGCCAAACAGGGACATCTGTCAAAGTGGCACTTCACTGAAAATCCAGTGTGTGGCTGACAGTCAAGTTGTTTCGATGTTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000103282.3 ENSMUST00000191646.6
CDS TCA 72 bp	AGATGTCCCTGTTTGGCTTTTGGTAGAGGAGGACACTaGATACAGCTTGGCTCCAAAGAAGTAGCAGGAATG	+
Preference number: 6 (lower is better) Translates to: RCPCLAFGRGGH*IQLGSKEVAGM Trigger: CATTCCTGCTACTTCTTTGGAGCCAAGCTGTATTCAGTGTCCTCCTCTACCAAAAGCCAAACAGGGACATCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103282.3
CDS GCA 72 bp	CTTGACTGTCAGCCACACACTGGATTTTCAGTGAAGTaGCACTTTGACAGATGTCCCTGTTTGGCTTTTGGT	+
Preference number: 6 (lower is better) Translates to: LDCQPHTGFSVK*HFDRCPCLAFG Trigger: ACCAAAAGCCAAACAGGGACATCTGTCAAAGTGGCACTTCACTGAAAATCCAGTGTGTGGCTGACAGTCAAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000103282.3 ENSMUST00000191646.6
CDS TCA 72 bp	AACAACTTGACTGTCAGCCACACACTGGATTTTCAGTaGAGTGCCACTTTGACAGATGTCCCTGTTTGGCTT	+
Preference number: 6 (lower is better) Translates to: NNLTVSHTLDFQ*SATLTDVPVWL Trigger: AAGCCAAACAGGGACATCTGTCAAAGTGGCACTTCACTGAAAATCCAGTGTGTGGCTGACAGTCAAGTTGTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000103282.3 ENSMUST00000191646.6
CDS TCA 72 bp	TCCTGGAACTGTTGGTACCAAAACATCGAAACAACTTaGCTGTCAGCCACACACTGGATTTTCAGTGAAGTG	+
Preference number: 6 (lower is better) Translates to: SWNCWYQNIETT*LSATHWIFSEV Trigger: CACTTCACTGAAAATCCAGTGTGTGGCTGACAGTCAAGTTGTTTCGATGTTTTGGTACCAACAGTTCCAGGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000103282.3 ENSMUST00000191646.6

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