Pregenerated sensors for TRBV29 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000076480Ensembl transcript IDs: ENSMUST00000103281.3
Found 5 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | TTTAGCAGAATCCAGAATCAGGGAGAAATGCTCCCGCTTCTTCCGTaGGACCCTGTATCCTTTAGGGATGTCTCCTTCGCTGTTACTATC | + |
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Preference number: 5 (lower is better) Translates to: FSRIQNQGEMLPLLP*DPVSFRDVSFAVTI Trigger: GATAGTAACAGCGAAGGAGACATCCCTAAAGGATACAGGGTCTCACGGAAGAAGCGGGAGCATTTCTCCCTGATTCTGGATTCTGCTAAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103281.3 |
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| CDS CCA 90 bp | AGCAAAACATTCTCTCCCATTCTTTTGATCAGGTATCTTGGCATCTaGGTTACTTTCATGTCCACAAGGCCTGTTCCTAGGAAACACAGC | + |
|
Preference number: 5 (lower is better) Translates to: SKTFSPILLIRYLGI*VTFMSTRPVPRKHS Trigger: GCTGTGTTTCCTAGGAACAGGCCTTGTGGACATGAAAGTAACCCAGATGCCAAGATACCTGATCAAAAGAATGGGAGAGAATGTTTTGCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000103281.3 |
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| CDS TCA 72 bp | ATCCAGAATCAGGGAGAAATGCTCCCGCTTCTTCCGTaGGACCCTGTATCCTTTAGGGATGTCTCCTTCGCT | + |
|
Preference number: 6 (lower is better) Translates to: IQNQGEMLPLLP*DPVSFRDVSFA Trigger: AGCGAAGGAGACATCCCTAAAGGATACAGGGTCTCACGGAAGAAGCGGGAGCATTTCTCCCTGATTCTGGAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103281.3 |
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| CDS CCA 72 bp | TTCTCTCCCATTCTTTTGATCAGGTATCTTGGCATCTaGGTTACTTTCATGTCCACAAGGCCTGTTCCTAGG | + |
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Preference number: 6 (lower is better) Translates to: FSPILLIRYLGI*VTFMSTRPVPR Trigger: CCTAGGAACAGGCCTTGTGGACATGAAAGTAACCCAGATGCCAAGATACCTGATCAAAAGAATGGGAGAGAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103281.3 |
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| CDS CCA 72 bp | CAAAACATTCTCTCCCATTCTTTTGATCAGGTATCTTaGCATCTGGGTTACTTTCATGTCCACAAGGCCTGT | + |
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Preference number: 6 (lower is better) Translates to: QNILSHSFDQVS*HLGYFHVHKAC Trigger: ACAGGCCTTGTGGACATGAAAGTAACCCAGATGCCAAGATACCTGATCAAAAGAATGGGAGAGAATGTTTTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000103281.3 |
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