Pregenerated sensors for TRBV20 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000076476

Ensembl transcript IDs: ENSMUST00000103277.2

Found 6 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS GCA 90 bp	TTCAAATGTCTTTTGAGGCGATTGACGATACCAAGCTACAGAAGTTaGCTGAAAACCCACAGCTTGACACTCCATCCTCATGGAAGTTCC	+
Preference number: 5 (lower is better) Translates to: FKCLLRRLTIPSYRS*LKTHSLTLHPHGSS Trigger: GGAACTTCCATGAGGATGGAGTGTCAAGCTGTGGGTTTTCAGGCAACTTCTGTAGCTTGGTATCGTCAATCGCCTCAAAAGACATTTGAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000103277.2
CDS GCA 72 bp	CTTTTGAGGCGATTGACGATACCAAGCTACAGAAGTTaGCTGAAAACCCACAGCTTGACACTCCATCCTCAT	+
Preference number: 6 (lower is better) Translates to: LLRRLTIPSYRS*LKTHSLTLHPH Trigger: ATGAGGATGGAGTGTCAAGCTGTGGGTTTTCAGGCAACTTCTGTAGCTTGGTATCGTCAATCGCCTCAAAAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000103277.2
CDS CAA 72 bp	TCTTTTGAGGCGATTGACGATACCAAGCTACAGAAGTaGCCTGAAAACCCACAGCTTGACACTCCATCCTCA	+
Preference number: 6 (lower is better) Translates to: SFEAIDDTKLQK*PENPQLDTPSS Trigger: TGAGGATGGAGTGTCAAGCTGTGGGTTTTCAGGCAACTTCTGTAGCTTGGTATCGTCAATCGCCTCAAAAGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000103277.2
CDS CAA 90 bp	GTTCAAATGTCTTTTGAGGCGATTGACGATACCAAGCTACAGAAGTaGCCTGAAAACCCACAGCTTGACACTCCATCCTCATGGAAGTTC	+
Preference number: 6 (lower is better) Translates to: VQMSFEAIDDTKLQK*PENPQLDTPSSWKF Trigger: GAACTTCCATGAGGATGGAGTGTCAAGCTGTGGGTTTTCAGGCAACTTCTGTAGCTTGGTATCGTCAATCGCCTCAAAAGACATTTGAAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000103277.2
CDS CAA 72 bp	AGAAAGTGCTATCAGTTCAAATGTCTTTTGAGGCGATaGACGATACCAAGCTACAGAAGTTGCCTGAAAACC	+
Preference number: 6 (lower is better) Translates to: RKCYQFKCLLRR*TIPSYRSCLKT Trigger: GGTTTTCAGGCAACTTCTGTAGCTTGGTATCGTCAATCGCCTCAAAAGACATTTGAACTGATAGCACTTTCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000103277.2
CDS CAA 72 bp	GTTCACAGTAGAAAGTGCTATCAGTTCAAATGTCTTTaGAGGCGATTGACGATACCAAGCTACAGAAGTTGC	+
Preference number: 6 (lower is better) Translates to: VHSRKCYQFKCL*RRLTIPSYRSC Trigger: GCAACTTCTGTAGCTTGGTATCGTCAATCGCCTCAAAAGACATTTGAACTGATAGCACTTTCTACTGTGAAC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103277.2

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