Pregenerated sensors for TRBV17 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000076474

Ensembl transcript IDs: ENSMUST00000103275.4

Found 6 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS GCA 90 bp	CTTGTATCTTGGGTTCTGCTTAACCGTAGTATCCACAAAAGTGGCTaGAAGAAGACAGAAGATCACACAGCAAAGAAGTCTAGGATCCAT	+
Preference number: 5 (lower is better) Translates to: LVSWVLLNRSIHKSG*KKTEDHTAKKSRIH Trigger: ATGGATCCTAGACTTCTTTGCTGTGTGATCTTCTGTCTTCTTGCAGCCACTTTTGTGGATACTACGGTTAAGCAGAACCCAAGATACAAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103275.4
CDS GCA 90 bp	AAATTCACTGGTTTTCCAACTCTTGCAAGCTTGTATCTTGGGTTCTaGTTAACCGTAGTATCCACAAAAGTGGCTGCAAGAAGACAGAAG	+
Preference number: 5 (lower is better) Translates to: KFTGFPTLASLYLGF*LTVVSTKVAARRQK Trigger: CTTCTGTCTTCTTGCAGCCACTTTTGTGGATACTACGGTTAAGCAGAACCCAAGATACAAGCTTGCAAGAGTTGGAAAACCAGTGAATTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000103275.4
CDS GCA 72 bp	TGGGTTCTGCTTAACCGTAGTATCCACAAAAGTGGCTaGAAGAAGACAGAAGATCACACAGCAAAGAAGTCT	+
Preference number: 6 (lower is better) Translates to: WVLLNRSIHKSG*KKTEDHTAKKS Trigger: AGACTTCTTTGCTGTGTGATCTTCTGTCTTCTTGCAGCCACTTTTGTGGATACTACGGTTAAGCAGAACCCA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103275.4
CDS CCA 72 bp	ATTCACTGGTTTTCCAACTCTTGCAAGCTTGTATCTTaGGTTCTGCTTAACCGTAGTATCCACAAAAGTGGC	+
Preference number: 6 (lower is better) Translates to: IHWFSNSCKLVS*VLLNRSIHKSG Trigger: GCCACTTTTGTGGATACTACGGTTAAGCAGAACCCAAGATACAAGCTTGCAAGAGTTGGAAAACCAGTGAAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000103275.4
CDS CAA 72 bp	CAGATCAAATTCACTGGTTTTCCAACTCTTGCAAGCTaGTATCTTGGGTTCTGCTTAACCGTAGTATCCACA	+
Preference number: 6 (lower is better) Translates to: QIKFTGFPTLAS*YLGFCLTVVST Trigger: TGTGGATACTACGGTTAAGCAGAACCCAAGATACAAGCTTGCAAGAGTTGGAAAACCAGTGAATTTGATCTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103275.4
CDS CCA 72 bp	ATCATGATTCATAGTCTGAGAACAGATCAAATTCACTaGTTTTCCAACTCTTGCAAGCTTGTATCTTGGGTT	+
Preference number: 6 (lower is better) Translates to: IMIHSLRTDQIH*FSNSCKLVSWV Trigger: AACCCAAGATACAAGCTTGCAAGAGTTGGAAAACCAGTGAATTTGATCTGTTCTCAGACTATGAATCATGAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103275.4

---

If you would like us to post a table for your organism of interest, or have questions, please reach out to eerik at stanford dot edu or xjgao at stanford.edu