Pregenerated sensors for TRBV13-3 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000076470

Ensembl transcript IDs: ENSMUST00000103271.2

Found 15 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS CCA 90 bp	ACAGCTCAATGTCACCTTTCCTCCTGTTACTGCCACCTTGCTTCTTaGACTTTGGGTGACTGCAGCCTCCATGTGTTTTGCACACAGGAG	+
Preference number: 5 (lower is better) Translates to: TAQCHLSSCYCHLAS*TLGDCSLHVFCTQE Trigger: CTCCTGTGTGCAAAACACATGGAGGCTGCAGTCACCCAAAGTCCAAGAAGCAAGGTGGCAGTAACAGGAGGAAAGGTGACATTGAGCTGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103271.2
CDS TCA 90 bp	TCACCTTTCCTCCTGTTACTGCCACCTTGCTTCTTGGACTTTGGGTaGCTGCAGCCTCCATGTGTTTTGCACACAGGAGAATCAAAACCA	+
Preference number: 5 (lower is better) Translates to: SPFLLLLPPCFLDFG*LQPPCVLHTGESKP Trigger: TGGTTTTGATTCTCCTGTGTGCAAAACACATGGAGGCTGCAGTCACCCAAAGTCCAAGAAGCAAGGTGGCAGTAACAGGAGGAAAGGTGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000103271.2
CDS GCA 90 bp	CTTTCCTCCTGTTACTGCCACCTTGCTTCTTGGACTTTGGGTGACTaGAGCCTCCATGTGTTTTGCACACAGGAGAATCAAAACCACAAA	+
Preference number: 5 (lower is better) Translates to: LSSCYCHLASWTLGD*SLHVFCTQENQNHK Trigger: TTTGTGGTTTTGATTCTCCTGTGTGCAAAACACATGGAGGCTGCAGTCACCCAAAGTCCAAGAAGCAAGGTGGCAGTAACAGGAGGAAAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000103271.2
CDS CCA 90 bp	AATGTCACCTTTCCTCCTGTTACTGCCACCTTGCTTCTTGGACTTTaGGTGACTGCAGCCTCCATGTGTTTTGCACACAGGAGAATCAAA	+
Preference number: 5 (lower is better) Translates to: NVTFPPVTATLLLGL*VTAASMCFAHRRIK Trigger: TTTGATTCTCCTGTGTGCAAAACACATGGAGGCTGCAGTCACCCAAAGTCCAAGAAGCAAGGTGGCAGTAACAGGAGGAAAGGTGACATT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103271.2
CDS GCA 72 bp	CTGGTGACAGCTCAATGTCACCTTTCCTCCTGTTACTaGCACCTTGCTTCTTGGACTTTGGGTGACTGCAGC	+
Preference number: 6 (lower is better) Translates to: LVTAQCHLSSCY*HLASWTLGDCS Trigger: GCTGCAGTCACCCAAAGTCCAAGAAGCAAGGTGGCAGTAACAGGAGGAAAGGTGACATTGAGCTGTCACCAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103271.2
CDS CAA 72 bp	CAGCTCAATGTCACCTTTCCTCCTGTTACTGCCACCTaGCTTCTTGGACTTTGGGTGACTGCAGCCTCCATG	+
Preference number: 6 (lower is better) Translates to: QLNVTFPPVTAT*LLGLWVTAASM Trigger: CATGGAGGCTGCAGTCACCCAAAGTCCAAGAAGCAAGGTGGCAGTAACAGGAGGAAAGGTGACATTGAGCTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103271.2
CDS CCA 72 bp	TTTCCTCCTGTTACTGCCACCTTGCTTCTTGGACTTTaGGTGACTGCAGCCTCCATGTGTTTTGCACACAGG	+
Preference number: 6 (lower is better) Translates to: FPPVTATLLLGL*VTAASMCFAHR Trigger: CCTGTGTGCAAAACACATGGAGGCTGCAGTCACCCAAAGTCCAAGAAGCAAGGTGGCAGTAACAGGAGGAAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103271.2
CDS CCA 72 bp	TGTCACCTTTCCTCCTGTTACTGCCACCTTGCTTCTTaGACTTTGGGTGACTGCAGCCTCCATGTGTTTTGC	+
Preference number: 6 (lower is better) Translates to: CHLSSCYCHLAS*TLGDCSLHVFC Trigger: GCAAAACACATGGAGGCTGCAGTCACCCAAAGTCCAAGAAGCAAGGTGGCAGTAACAGGAGGAAAGGTGACA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103271.2
CDS CCA 72 bp	AGCCAACTCCAGAATGAGAGAGAAATTCTCTTGGCTTaGTCTGGAGGCCTTGTACCCATCAGGGATATCTCC	+
Preference number: 6 (lower is better) Translates to: SQLQNEREILLA*SGGLVPIRDIS Trigger: GGAGATATCCCTGATGGGTACAAGGCCTCCAGACCAAGCCAAGAGAATTTCTCTCTCATTCTGGAGTTGGCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103271.2
CDS CCA 72 bp	AGGGAAGCCAACTCCAGAATGAGAGAGAAATTCTCTTaGCTTGGTCTGGAGGCCTTGTACCCATCAGGGATA	+
Preference number: 6 (lower is better) Translates to: REANSRMREKFS*LGLEALYPSGI Trigger: TATCCCTGATGGGTACAAGGCCTCCAGACCAAGCCAAGAGAATTTCTCTCTCATTCTGGAGTTGGCTTCCCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103271.2
CDS CAA 72 bp	ATGAGAGAGAAATTCTCTTGGCTTGGTCTGGAGGCCTaGTACCCATCAGGGATATCTCCTTTCTCCGTGCTG	+
Preference number: 6 (lower is better) Translates to: MREKFSWLGLEA*YPSGISPFSVL Trigger: CAGCACGGAGAAAGGAGATATCCCTGATGGGTACAAGGCCTCCAGACCAAGCCAAGAGAATTTCTCTCTCAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103271.2
CDS CAA 72 bp	AAGGGAAGCCAACTCCAGAATGAGAGAGAAATTCTCTaGGCTTGGTCTGGAGGCCTTGTACCCATCAGGGAT	+
Preference number: 6 (lower is better) Translates to: KGSQLQNEREIL*AWSGGLVPIRD Trigger: ATCCCTGATGGGTACAAGGCCTCCAGACCAAGCCAAGAGAATTTCTCTCTCATTCTGGAGTTGGCTTCCCTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103271.2
CDS CAA 90 bp	CAATGTCACCTTTCCTCCTGTTACTGCCACCTTGCTTCTTGGACTTaGGGTGACTGCAGCCTCCATGTGTTTTGCACACAGGAGAATCAA	+
Preference number: 6 (lower is better) Translates to: QCHLSSCYCHLASWT*GDCSLHVFCTQENQ Trigger: TTGATTCTCCTGTGTGCAAAACACATGGAGGCTGCAGTCACCCAAAGTCCAAGAAGCAAGGTGGCAGTAACAGGAGGAAAGGTGACATTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103271.2
CDS TCA 72 bp	ATACAGCTGTCTGAGAAAGGGAAGCCAACTCCAGAATaGGAGAGAAATTCTCTTGGCTTGGTCTGGAGGCCT	+
Preference number: 6 (lower is better) Translates to: IQLSEKGKPTPE*ERNSLGLVWRP Trigger: AGGCCTCCAGACCAAGCCAAGAGAATTTCTCTCTCATTCTGGAGTTGGCTTCCCTTTCTCAGACAGCTGTAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103271.2
CDS GCA 72 bp	TGTTACTGCCACCTTGCTTCTTGGACTTTGGGTGACTaGAGCCTCCATGTGTTTTGCACACAGGAGAATCAA	+
Preference number: 6 (lower is better) Translates to: CYCHLASWTLGD*SLHVFCTQENQ Trigger: TTGATTCTCCTGTGTGCAAAACACATGGAGGCTGCAGTCACCCAAAGTCCAAGAAGCAAGGTGGCAGTAACA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103271.2