RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for TRBV13-2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000076469

Ensembl transcript IDs: ENSMUST00000103270.4

Found 10 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS TCA 90 bp CACCTTGTTTCTTGGGCTTTGGGTGACTGCAGCCTCCATGTGTTTTaGACACAGGAGACTGGAGAGCACGAAGAAGAGCCTGGAGCCCAT +
Preference number: 5 (lower is better)
Translates to: HLVSWALGDCSLHVF*TQETGEHEEEPGAH
Trigger: ATGGGCTCCAGGCTCTTCTTCGTGCTCTCCAGTCTCCTGTGTTCAAAACACATGGAGGCTGCAGTCACCCAAAGCCCAAGAAACAAGGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000103270.4
CDS TCA 90 bp TCACCTTTCCTCCTGTTACTGCCACCTTGTTTCTTGGGCTTTGGGTaGCTGCAGCCTCCATGTGTTTTGAACACAGGAGACTGGAGAGCA +
Preference number: 5 (lower is better)
Translates to: SPFLLLLPPCFLGFG*LQPPCVLNTGDWRA
Trigger: TGCTCTCCAGTCTCCTGTGTTCAAAACACATGGAGGCTGCAGTCACCCAAAGCCCAAGAAACAAGGTGGCAGTAACAGGAGGAAAGGTGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000103270.4
CDS CCA 90 bp AATGTCACCTTTCCTCCTGTTACTGCCACCTTGTTTCTTGGGCTTTaGGTGACTGCAGCCTCCATGTGTTTTGAACACAGGAGACTGGAG +
Preference number: 5 (lower is better)
Translates to: NVTFPPVTATLFLGL*VTAASMCFEHRRLE
Trigger: CTCCAGTCTCCTGTGTTCAAAACACATGGAGGCTGCAGTCACCCAAAGCCCAAGAAACAAGGTGGCAGTAACAGGAGGAAAGGTGACATT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000103270.4
CDS GCA 90 bp GTTATTAGTCTGATTACAGCTCAATGTCACCTTTCCTCCTGTTACTaGCACCTTGTTTCTTGGGCTTTGGGTGACTGCAGCCTCCATGTG +
Preference number: 5 (lower is better)
Translates to: VISLITAQCHLSSCY*HLVSWALGDCSLHV
Trigger: CACATGGAGGCTGCAGTCACCCAAAGCCCAAGAAACAAGGTGGCAGTAACAGGAGGAAAGGTGACATTGAGCTGTAATCAGACTAATAAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000103270.4
CDS CAA 72 bp GGGGGTAGCCAACTCCAGAATGAGGGAGAAGTTCTCTaGGCTTGGTCTGGAGGCCTTGTATCCATCAGGGAT +
Preference number: 6 (lower is better)
Translates to: GGSQLQNEGEVL*AWSGGLVSIRD
Trigger: ATCCCTGATGGATACAAGGCCTCCAGACCAAGCCAAGAGAACTTCTCCCTCATTCTGGAGTTGGCTACCCCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000103270.4
CDS TCA 72 bp TCTTGGGCTTTGGGTGACTGCAGCCTCCATGTGTTTTaGACACAGGAGACTGGAGAGCACGAAGAAGAGCCT +
Preference number: 6 (lower is better)
Translates to: SWALGDCSLHVF*TQETGEHEEEP
Trigger: AGGCTCTTCTTCGTGCTCTCCAGTCTCCTGTGTTCAAAACACATGGAGGCTGCAGTCACCCAAAGCCCAAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000103270.4
CDS CAA 72 bp CAGCTCAATGTCACCTTTCCTCCTGTTACTGCCACCTaGTTTCTTGGGCTTTGGGTGACTGCAGCCTCCATG +
Preference number: 6 (lower is better)
Translates to: QLNVTFPPVTAT*FLGLWVTAASM
Trigger: CATGGAGGCTGCAGTCACCCAAAGCCCAAGAAACAAGGTGGCAGTAACAGGAGGAAAGGTGACATTGAGCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000103270.4
CDS TCA 72 bp CTCCTGTTACTGCCACCTTGTTTCTTGGGCTTTGGGTaGCTGCAGCCTCCATGTGTTTTGAACACAGGAGAC +
Preference number: 6 (lower is better)
Translates to: LLLLPPCFLGFG*LQPPCVLNTGD
Trigger: GTCTCCTGTGTTCAAAACACATGGAGGCTGCAGTCACCCAAAGCCCAAGAAACAAGGTGGCAGTAACAGGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000103270.4
CDS CCA 72 bp AGCCAACTCCAGAATGAGGGAGAAGTTCTCTTGGCTTaGTCTGGAGGCCTTGTATCCATCAGGGATATCTCC +
Preference number: 6 (lower is better)
Translates to: SQLQNEGEVLLA*SGGLVSIRDIS
Trigger: GGAGATATCCCTGATGGATACAAGGCCTCCAGACCAAGCCAAGAGAACTTCTCCCTCATTCTGGAGTTGGCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000103270.4
CDS CCA 72 bp TTTCCTCCTGTTACTGCCACCTTGTTTCTTGGGCTTTaGGTGACTGCAGCCTCCATGTGTTTTGAACACAGG +
Preference number: 6 (lower is better)
Translates to: FPPVTATLFLGL*VTAASMCFEHR
Trigger: CCTGTGTTCAAAACACATGGAGGCTGCAGTCACCCAAAGCCCAAGAAACAAGGTGGCAGTAACAGGAGGAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000103270.4