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Pregenerated sensors for TRBV13-1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000076467

Ensembl transcript IDs: ENSMUST00000103268.3, ENSMUST00000194399.2

Found 10 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS CAA 72 bp GGGAGAAGCCAATTCCAGCAGGAGGAAGAAGTCTTCTaGCGTTGTTCTGGTGGCCTTGTACCCATCAGGGAC +
Preference number: 6 (lower is better)
Translates to: GRSQFQQEEEVF*RCSGGLVPIRD
Trigger: GTCCCTGATGGGTACAAGGCCACCAGAACAACGCAAGAAGACTTCTTCCTCCTGCTGGAATTGGCTTCTCCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103268.3
ENSMUST00000194399.2
CDS GCA 72 bp GGAGAAGCCAATTCCAGCAGGAGGAAGAAGTCTTCTTaGGTTGTTCTGGTGGCCTTGTACCCATCAGGGACA +
Preference number: 6 (lower is better)
Translates to: GEANSSRRKKSS*VVLVALYPSGT
Trigger: TGTCCCTGATGGGTACAAGGCCACCAGAACAACGCAAGAAGACTTCTTCCTCCTGCTGGAATTGGCTTCTCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103268.3
ENSMUST00000194399.2
CDS CAA 90 bp GTCTGGCGACAGCTCAATGTCACGTTTCCTCCTGTTACTGTCACCTaGTTTCTAGGGCTTTGGGTGACTGCAGCCTCCATGTTTGTACAC +
Preference number: 6 (lower is better)
Translates to: VWRQLNVTFPPVTVT*FLGLWVTAASMFVH
Trigger: GTGTACAAACATGGAGGCTGCAGTCACCCAAAGCCCTAGAAACAAGGTGACAGTAACAGGAGGAAACGTGACATTGAGCTGTCGCCAGAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000103268.3
CDS CAA 72 bp CAGCTCAATGTCACGTTTCCTCCTGTTACTGTCACCTaGTTTCTAGGGCTTTGGGTGACTGCAGCCTCCATG +
Preference number: 6 (lower is better)
Translates to: QLNVTFPPVTVT*FLGLWVTAASM
Trigger: CATGGAGGCTGCAGTCACCCAAAGCCCTAGAAACAAGGTGACAGTAACAGGAGGAAACGTGACATTGAGCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103268.3
ENSMUST00000194399.2
CDS CAA 90 bp GAGAGGGAGAAGCCAATTCCAGCAGGAGGAAGAAGTCTTCTTGCGTaGTTCTGGTGGCCTTGTACCCATCAGGGACATCTCCTATTTGAA +
Preference number: 6 (lower is better)
Translates to: EREKPIPAGGRSLLA*FWWPCTHQGHLLFE
Trigger: TTCAAATAGGAGATGTCCCTGATGGGTACAAGGCCACCAGAACAACGCAAGAAGACTTCTTCCTCCTGCTGGAATTGGCTTCTCCCTCTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103268.3
ENSMUST00000194399.2
CDS CAA 90 bp GTCTGGCGACAGCTCAATGTCACGTTTCCTCCTGTTACTGTCACCTaGTTTCTAGGGCTTTGGGTGACTGCAGCCTCCATGTGTTTTGTA +
Preference number: 6 (lower is better)
Translates to: VWRQLNVTFPPVTVT*FLGLWVTAASMCFV
Trigger: TACAAAACACATGGAGGCTGCAGTCACCCAAAGCCCTAGAAACAAGGTGACAGTAACAGGAGGAAACGTGACATTGAGCTGTCGCCAGAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000194399.2
CDS GCA 72 bp TGTTACTGTCACCTTGTTTCTAGGGCTTTGGGTGACTaGAGCCTCCATGTTTGTACACAGGAGGCTCAAGAC +
Preference number: 6 (lower is better)
Translates to: CYCHLVSRALGD*SLHVCTQEAQD
Trigger: GTCTTGAGCCTCCTGTGTACAAACATGGAGGCTGCAGTCACCCAAAGCCCTAGAAACAAGGTGACAGTAACA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000103268.3
CDS CCA 72 bp TTTCCTCCTGTTACTGTCACCTTGTTTCTAGGGCTTTaGGTGACTGCAGCCTCCATGTTTGTACACAGGAGG +
Preference number: 6 (lower is better)
Translates to: FPPVTVTLFLGL*VTAASMFVHRR
Trigger: CCTCCTGTGTACAAACATGGAGGCTGCAGTCACCCAAAGCCCTAGAAACAAGGTGACAGTAACAGGAGGAAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000103268.3
CDS CCA 72 bp TTTCCTCCTGTTACTGTCACCTTGTTTCTAGGGCTTTaGGTGACTGCAGCCTCCATGTGTTTTGTACACAGG +
Preference number: 6 (lower is better)
Translates to: FPPVTVTLFLGL*VTAASMCFVHR
Trigger: CCTGTGTACAAAACACATGGAGGCTGCAGTCACCCAAAGCCCTAGAAACAAGGTGACAGTAACAGGAGGAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000194399.2
CDS CAA 72 bp GTTTCCTCCTGTTACTGTCACCTTGTTTCTAGGGCTTaGGGTGACTGCAGCCTCCATGTGTTTTGTACACAG +
Preference number: 6 (lower is better)
Translates to: VSSCYCHLVSRA*GDCSLHVFCTQ
Trigger: CTGTGTACAAAACACATGGAGGCTGCAGTCACCCAAAGCCCTAGAAACAAGGTGACAGTAACAGGAGGAAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000194399.2