Pregenerated sensors for TRBV12-2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000094525Ensembl transcript IDs: ENSMUST00000103269.3
Found 5 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CAA 72 bp | ATCTTGGAGACTGGACAACCCCAGAATTTGCTGAACTaGTTCCCAGGAGAAAGAGAGCAACCCAAGATAGCA | + |
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Preference number: 6 (lower is better) Translates to: ILETGQPQNLLN*FPGEREQPKIA Trigger: TGCTATCTTGGGTTGCTCTCTTTCTCCTGGGAACAAGTTCAGCAAATTCTGGGGTTGTCCAGTCTCCAAGAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103269.3 |
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| CDS TCA 72 bp | TATGTATCTTGGAGACTGGACAACCCCAGAATTTGCTaGACTTGTTCCCAGGAGAAAGAGAGCAACCCAAGA | + |
|
Preference number: 6 (lower is better) Translates to: YVSWRLDNPRIC*TCSQEKESNPR Trigger: TCTTGGGTTGCTCTCTTTCTCCTGGGAACAAGTTCAGCAAATTCTGGGGTTGTCCAGTCTCCAAGATACATA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103269.3 |
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| CDS CCA 72 bp | CTTTCTCCCTTTCCTTTGATTATGTATCTTGGAGACTaGACAACCCCAGAATTTGCTGAACTTGTTCCCAGG | + |
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Preference number: 6 (lower is better) Translates to: LSPFPLIMYLGD*TTPEFAELVPR Trigger: CCTGGGAACAAGTTCAGCAAATTCTGGGGTTGTCCAGTCTCCAAGATACATAATCAAAGGAAAGGGAGAAAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103269.3 |
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| CDS GCA 72 bp | CAGAGTGATAGTCATCAAACTGTTGGACTGAGAATCTaGTGGGCAGGTTTCCTTTATCTCTCTCCATTTTAT | + |
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Preference number: 6 (lower is better) Translates to: QSDSHQTVGLRI*WAGFLYLSPFY Trigger: ATAAAATGGAGAGAGATAAAGGAAACCTGCCCAGCAGATTCTCAGTCCAACAGTTTGATGACTATCACTCTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103269.3 |
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| CDS TCA 72 bp | GAATACATTTTAGAATGGACCTTTCTCCCTTTCCTTTaGTTATGTATCTTGGAGACTGGACAACCCCAGAAT | + |
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Preference number: 6 (lower is better) Translates to: EYILEWTFLPFL*LCILETGQPQN Trigger: ATTCTGGGGTTGTCCAGTCTCCAAGATACATAATCAAAGGAAAGGGAGAAAGGTCCATTCTAAAATGTATTC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000103269.3 |
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