Pregenerated sensors for TRBV1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000076461

Ensembl transcript IDs: ENSMUST00000103262.3

Found 7 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS TCA 90 bp	CTCCGCAGAGTGAACAGCCACTGTAGTTGCTTTTGGAGATCCTGCTaGTACCAGCTCATCCAGGGATACTGGGAATTCTTCAAGATGCAG	+
Preference number: 5 (lower is better) Translates to: LRRVNSHCSCFWRSC*YQLIQGYWEFFKMQ Trigger: CTGCATCTTGAAGAATTCCCAGTATCCCTGGATGAGCTGGTATCAGCAGGATCTCCAAAAGCAACTACAGTGGCTGTTCACTCTGCGGAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103262.3
CDS GCA 72 bp	CAGTACAAGGTTCTGCCCTGGCTCATGTTGGCCACTTaGAGCCTCAGCTCCGTATCAGTGACCCGTGTGGCC	+
Preference number: 6 (lower is better) Translates to: QYKVLPWLMLAT*SLSSVSVTRVA Trigger: GGCCACACGGGTCACTGATACGGAGCTGAGGCTGCAAGTGGCCAACATGAGCCAGGGCAGAACCTTGTACTG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103262.3
CDS CAA 72 bp	GCAGTACAAGGTTCTGCCCTGGCTCATGTTGGCCACTaGCAGCCTCAGCTCCGTATCAGTGACCCGTGTGGC	+
Preference number: 6 (lower is better) Translates to: AVQGSALAHVGH*QPQLRISDPCG Trigger: GCCACACGGGTCACTGATACGGAGCTGAGGCTGCAAGTGGCCAACATGAGCCAGGGCAGAACCTTGTACTGC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103262.3
CDS CAA 72 bp	CTGCAGGTGCAGTACAAGGTTCTGCCCTGGCTCATGTaGGCCACTTGCAGCCTCAGCTCCGTATCAGTGACC	+
Preference number: 6 (lower is better) Translates to: LQVQYKVLPWLM*ATCSLSSVSVT Trigger: GGTCACTGATACGGAGCTGAGGCTGCAAGTGGCCAACATGAGCCAGGGCAGAACCTTGTACTGCACCTGCAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103262.3
CDS CCA 72 bp	GTTCACAGCTTGACCACGTGGTACCAGACGCCACCTTaGGTTTTGCTCCAGCAAAGTCACTGTGGGGTCTGT	+
Preference number: 6 (lower is better) Translates to: VHSLTTWYQTPP*VLLQQSHCGVC Trigger: ACAGACCCCACAGTGACTTTGCTGGAGCAAAACCCAAGGTGGCGTCTGGTACCACGTGGTCAAGCTGTGAAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000103262.3
CDS GCA 72 bp	ACCAGCTCATCCAGGGATACTGGGAATTCTTCAAGATaGAGCGTAGGTTCACAGCTTGACCACGTGGTACCA	+
Preference number: 6 (lower is better) Translates to: TSSSRDTGNSSR*SVGSQLDHVVP Trigger: TGGTACCACGTGGTCAAGCTGTGAACCTACGCTGCATCTTGAAGAATTCCCAGTATCCCTGGATGAGCTGGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103262.3
CDS TCA 72 bp	GTGAACAGCCACTGTAGTTGCTTTTGGAGATCCTGCTaGTACCAGCTCATCCAGGGATACTGGGAATTCTTC	+
Preference number: 6 (lower is better) Translates to: VNSHCSCFWRSC*YQLIQGYWEFF Trigger: GAAGAATTCCCAGTATCCCTGGATGAGCTGGTATCAGCAGGATCTCCAAAAGCAACTACAGTGGCTGTTCAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103262.3

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