Pregenerated sensors for TRBC2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000076498Ensembl transcript IDs: ENSMUST00000103299.3
Found 12 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 72 bp | AGAGTCAAGGTGTCAACGAGGAAGGATGGATATCCATaGAGGAAGAAGAGACAAGTTCTTAGGAACAGGAAT | + |
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Preference number: 3 (lower is better) Translates to: RVKVSTRKDGYP*RKKRQVLRNRN Trigger: ATTCCTGTTCCTAAGAACTTGTCTCTTCTTCCTCCATGGATATCCATCCTTCCTCGTTGACACCTTGACTCT 44% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103299.3 |
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| CDS-3UTR TCA 90 bp | TCAACGAGGAAGGATGGATATCCATGGAGGAAGAAGAGACAAGTTCTTAGGAACGATAGGATGCTGAAGTaGTTCCACAGTCTGCTCGGC | + |
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Preference number: 4 (lower is better) Translates to: STRKDGYPWRKKRQVLRNDRMLK*FHSLLG Trigger: GCCGAGCAGACTGTGGAATCACTTCAGCATCCTATC...GTTCCTAAGAACTTGTCTCTTCTTCCTCCATGGATATCCATCCTTCCTCGTTGA 48% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103299.3 |
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| CDS-3UTR GCA 90 bp | TTTCAGAGTCAAGGTGTCAACGAGGAAGGATGGATATCCATGGAGGAAGAAGAGTGGTTTCGAGGATTGTaGCAGAAGGTAGCAGAGACC | + |
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Preference number: 4 (lower is better) Translates to: FQSQGVNEEGWISMEEEEWFRGL*QKVAET Trigger: GGTCTCTGCTACCTTCTGGCACAATCCTCGAAACCA...CTCTTCTTCCTCCATGGATATCCATCCTTCCTCGTTGACACCTTGACTCTGAAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103299.3 |
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| CDS-3UTR GCA 90 bp | TTTCAGAGTCAAGGTGTCAACGAGGAAGGATGGATATCCATGGAGGAAGAAGAGGGCAGTAGCTATAATTaGTCTCCTTGTAGGCCTGAG | + |
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Preference number: 4 (lower is better) Translates to: FQSQGVNEEGWISMEEEEGSSYN*SPCRPE Trigger: CTCAGGCCTACAAGGAGAGCAATTATAGCTACTGCC...CTCTTCTTCCTCCATGGATATCCATCCTTCCTCGTTGACACCTTGACTCTGAAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103299.3 |
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| CDS-3UTR CCA 90 bp | AGAAGGTGCAGGAAAATCTATGGCCAGGGTGAAGAACGGCTCAGGATGCATAAACAAACAAGGAGACCTTaGGTGGAGTCACATTTCTCA | + |
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Preference number: 4 (lower is better) Translates to: RRCRKIYGQGEERLRMHKQTRRP*VESHFS Trigger: TGAGAAATGTGACTCCACCCAAGGTCTCCTTGTTTG...TTTATGCATCCTGAGCCGTTCTTCACCCTGGCCATAGATTTTCCTGCACCTTCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103299.3 |
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| CDS-3UTR CCA 90 bp | CAACGAGGAAGGATGGATATCCATGGAGGAAGAAGAGACAAGTTCTTAGGAACACAAGGAGACCTTGGGTaGAGTCACATTTCTCAGATC | + |
|
Preference number: 4 (lower is better) Translates to: QRGRMDIHGGRRDKFLGTQGDLG*SHISQI Trigger: GATCTGAGAAATGTGACTCCACCCAAGGTCTCCTTG...TGTTCCTAAGAACTTGTCTCTTCTTCCTCCATGGATATCCATCCTTCCTCGTTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103299.3 |
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| CDS-3UTR CAA 90 bp | CAACGAGGAAGGATGGATATCCATGGAGGAAGAAGAGACAAGTTCTTAGGAACATTCTGTGTGACAGGTTaGGGTGAGCCCTCTGGCCAC | + |
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Preference number: 5 (lower is better) Translates to: QRGRMDIHGGRRDKFLGTFCVTG*GEPSGH Trigger: GTGGCCAGAGGGCTCACCCAAACCTGTCACACAGAA...TGTTCCTAAGAACTTGTCTCTTCTTCCTCCATGGATATCCATCCTTCCTCGTTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103299.3 |
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| CDS-3UTR CAA 90 bp | TCAACGAGGAAGGATGGATATCCATGGAGGAAGAAGAGACAAGTTCTTAGGAACTTGCAATCTCTGCTTTaGATGGCTCAAACAAGGAGA | + |
|
Preference number: 5 (lower is better) Translates to: STRKDGYPWRKKRQVLRNLQSLL*MAQTRR Trigger: TCTCCTTGTTTGAGCCATCAAAAGCAGAGATTGCAA...GTTCCTAAGAACTTGTCTCTTCTTCCTCCATGGATATCCATCCTTCCTCGTTGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103299.3 |
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| CDS-3UTR CAA 90 bp | GGAAGGATGGATATCCATGGAGGAAGAAGAGACAAGTTCTTAGGAACAGGAATTAGGGTAGCCTTTTGTTaGTTTGCAATCTCTGCTTTT | + |
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Preference number: 5 (lower is better) Translates to: GRMDIHGGRRDKFLGTGIRVAFC*FAISAF Trigger: AAAAGCAGAGATTGCAAACAAACAAAAGGCTACCCT...AATTCCTGTTCCTAAGAACTTGTCTCTTCTTCCTCCATGGATATCCATCCTTCC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103299.3 |
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| CDS CAA 90 bp | GCACTGATGTTCTGTGTGACAGGTTTGGGTGAGCCCTCTGGCCACTaGTCCTCCTCTGAAAGCCCATGGAACTGCACTTGGCAGCGGAAG | + |
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Preference number: 6 (lower is better) Translates to: ALMFCVTGLGEPSGH*SSSESPWNCTWQRK Trigger: CTTCCGCTGCCAAGTGCAGTTCCATGGGCTTTCAGAGGAGGACAAGTGGCCAGAGGGCTCACCCAAACCTGTCACACAGAACATCAGTGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103299.3 |
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| CDS TCA 72 bp | TTGCAGACAGAACCCCCTGATGATAGGATGCTGAAGTaGTTCCACAGTCTGCTCGGCCCCAGGCCTCTGCAC | + |
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Preference number: 6 (lower is better) Translates to: LQTEPPDDRMLK*FHSLLGPRPLH Trigger: GTGCAGAGGCCTGGGGCCGAGCAGACTGTGGAATCACTTCAGCATCCTATCATCAGGGGGTTCTGTCTGCAA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000103299.3 |
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| CDS CAA 72 bp | TTCTGTGTGACAGGTTTGGGTGAGCCCTCTGGCCACTaGTCCTCCTCTGAAAGCCCATGGAACTGCACTTGG | + |
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Preference number: 6 (lower is better) Translates to: FCVTGLGEPSGH*SSSESPWNCTW Trigger: CCAAGTGCAGTTCCATGGGCTTTCAGAGGAGGACAAGTGGCCAGAGGGCTCACCCAAACCTGTCACACAGAA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103299.3 |
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